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Homologs of ycjj gene of NC_006905_P3

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SE451236_12760
( YP_008265578.1 )

amino acid permease

NC_021820
(Salmonella enterica 08-1736)

1e-178

100

2) orf48
( YP_005237247.1 )

putative amino acid permease

NC_016856
(Salmonella enterica 14028S)

1e-178

100

3) UMN798_1437
( YP_005396779.1 )

amino acid permease

NC_017046
(Salmonella enterica 798)

1e-178

100

4) CFSAN001921_10250
( YP_008255423.1 )

amino acid permease

NC_021814
(Salmonella enterica CFSAN001921)

1e-178

100

5) STMMW_13841
( YP_005232438.1 )

putative amino acid permease

NC_016854
(Salmonella enterica D23580)

1e-178

100

6) orf48
( NP_460344.1 )

amino acid permease

NC_003197
(Salmonella enterica LT2)

1e-178

100

7) orf48
( YP_002243766.1 )

amino acid permease

NC_011294
(Salmonella enterica P125109)

1e-178

100

8) SPC_2350
( YP_002637908.1 )

amino acid permease

NC_012125
(Salmonella enterica RKS4594)

1e-178

100

9) ycjj
( YP_216387.1 )

amino acid permease

NC_006905
(Salmonella enterica SC-B67)

1e-178

100

10) SPAB_01949
( YP_001588172.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

1e-178

100

11) SL1344_1313
( YP_005181223.1 )

putative amino acid permease

NC_016810
(Salmonella enterica SL1344)

1e-178

100

12) SeAg_B1792
( YP_002146660.1 )

amino acid transporter

NC_011149
(Salmonella enterica SL483)

1e-178

100

13) STM474_1384
( YP_005242279.1 )

putative amino acid permease

NC_016857
(Salmonella enterica ST4/74)

1e-178

100

14) STMDT12_C13950
( YP_005247091.1 )

amino acid transporter

NC_016860
(Salmonella enterica T000240)

1e-178

100

15) STU288_03215
( YP_007901748.1 )

amino acid permease

NC_021151
(Salmonella enterica U288)

1e-178

100

16) STMUK_1345
( YP_005251883.1 )

putative amino acid permease

NC_016863
(Salmonella enterica UK-1)

1e-178

100

17) SEEB0189_12640
( YP_008308843.1 )

amino acid permease

NC_021844
(Salmonella enterica CFSAN000189)

1e-178

18) CFSAN002050_13290
( YP_008260569.1 )

amino acid permease

NC_021818
(Salmonella enterica CFSAN002050)

1e-178

19) SeSA_A1476
( YP_002114394.1 )

amino acid transporter

NC_011094
(Salmonella enterica CVM19633)

2e-178

20) SBOV13771
( YP_008505245.1 )

amino acid transporter

NC_022241
(Salmonella enterica 3114)

2e-178

21) SeD_A1963
( YP_002215748.1 )

amino acid transporter

NC_011205
(Salmonella enterica CT_02021853)

2e-178

22) SNSL254_A1492
( YP_002040634.1 )

amino acid transporter

NC_011080
(Salmonella enterica SL254)

3e-178

23) SN31241_24510
( YP_008360367.1 )

Amino acid transporter

NC_021902
(Salmonella enterica USMARC-S3124.1)

3e-178

24) SEEH1578_16130
( YP_008247285.1 )

Y+L amino acid transporter 2

NC_021810
(Salmonella enterica 41578)

4e-178

25) SU5_01996
( YP_006087630.1 )

putative amino acid permease

NC_017623
(Salmonella enterica B182)

4e-178

26) CFSAN002069_02105
( YP_008249281.1 )

amino acid permease

NC_021812
(Salmonella enterica CFSAN002069)

4e-178

27) SeHA_C1513
( YP_002045385.1 )

amino acid transporter

NC_011083
(Salmonella enterica SL476)

4e-178

28) CFSAN001992_04700
( YP_007470698.1 )

amino acid permease

NC_020307
(Salmonella enterica CFSAN001992)

5e-178

29) orf48
( YP_002226703.1 )

amino acid permease

NC_011274
(Salmonella enterica 287/91)

6e-178

30) SBG_1218
( YP_004730088.1 )

amino acid permease

NC_015761
(Salmonella bongori NCTC 12419)

1e-177

31) SSPA1370
( YP_002142209.1 )

amino acid permease

NC_011147
(Salmonella enterica AKU12601)

6e-178

32) SPA1474
( YP_150723.1 )

amino acid permease

NC_006511
(Salmonella enterica ATCC 9150)

6e-178

33) SPUCDC_1196
( YP_008480871.1 )

putative amino acid permease

NC_022221
(Salmonella enterica CDC1983-67)

6e-177

34) STY1743
( NP_456146.1 )

putative amino acid permease

NC_003198
(Salmonella enterica CT18)

6e-177

35) STBHUCCB_13380
( YP_005216898.1 )

Amino acid transporter

NC_016832
(Salmonella enterica P-stx-12)

6e-177

36) SPUL_1196
( YP_005212409.1 )

putative amino acid permease

NC_016831
(Salmonella enterica RKS5078)

6e-177

37) I137_05510
( YP_008380614.1 )

amino acid permease

NC_021984
(Salmonella enterica S06004)

6e-177

38) t1247
( NP_805052.1 )

amino acid permease

NC_004631
(Salmonella enterica Ty2)

6e-177

39) TY21A_06340
( YP_007925574.1 )

putative amino acid permease

NC_021176
(Salmonella enterica Ty21a)

6e-177

40) XCC2819
( NP_638167.1 )

amino acid transporter

NC_003902
(Xanthomonas campestris ATCC 33913)

4e-70

41) Sros_2324
( YP_003338047.1 )

transporter

NC_013595
(Streptosporangium roseum DSM 43021)

2e-68

42) BN6_35750
( YP_007037744.1 )

putative transporter

NC_019673
(Saccharothrix espanaensis DSM 44229)

1e-66

43) Bcoa_0710
( YP_004858710.1 )

amino acid permease

NC_016023
(Bacillus coagulans 36D1)

1e-65

44) Micau_2542
( YP_003835657.1 )

amino acid permease-associated protein

NC_014391
(Micromonospora aurantiaca ATCC 27029)

4e-65

45) Sare_1963
( YP_001536839.1 )

amino acid permease-associated protein

NC_009953
(Salinispora arenicola CNS-205)

6e-65

46) XCV3136
( YP_364867.1 )

amino acid-polyamine-organocation superfamily protein

NC_007508
(Xanthomonas campestris 85-10)

8e-65

47) ML5_5983
( YP_004085582.1 )

amino acid permease-associated protein

NC_014815
(Micromonospora sp. L5)

2e-64

48) XAC2989
( NP_643298.1 )

amino acid transporter

NC_003919
(Xanthomonas axonopodis 306)

3e-64

49) XAC29_15205
( YP_007637427.1 )

amino acid transporter

NC_020800
(Xanthomonas axonopodis Xac29-1)

3e-64

50) potE
( YP_007651241.1 )

Amino acid transporter

NC_020815
(Xanthomonas citri Aw12879)

3e-64

51) XCR_3192
( YP_005638173.1 )

amino acid transporter

NC_017271
(Xanthomonas campestris 756C)

5e-64

52) XC_1293
( YP_242382.1 )

amino acid transporter

NC_007086
(Xanthomonas campestris 8004)

1e-63

53) XOC_1421
( YP_005627770.1 )

amino acid transporter

NC_017267
(Xanthomonas oryzae BLS256)

3e-63

54) XACM_2923
( YP_004852474.1 )

amino acid transporter

NC_016010
(Xanthomonas axonopodis F1)

5e-63

55) XOO_1166
( YP_450195.1 )

amino acid transporter

NC_007705
(Xanthomonas oryzae MAFF 311018)

5e-63

56) PXO_02208
( YP_001915062.1 )

amino acid transporter

NC_010717
(Xanthomonas oryzae PXO99A)

5e-63

57) xccb100_1341
( YP_001902747.1 )

Amino acid-polyamine-organocation superfamily protein

NC_010688
(Xanthomonas campestris B100)

1e-62

58) XOO1267
( YP_199906.1 )

amino acid transporter

NC_006834
(Xanthomonas oryzae KACC10331)

2e-62

59) KSE_06100
( YP_004902408.1 )

putative amino acid transporter

NC_016109
(Kitasatospora setae KM-6054)

5e-62

60) MODMU_1810
( YP_006365738.1 )

transporter

NC_017955
(Modestobacter marinus BC501)

2e-61

61) Micau_1767
( YP_003834896.1 )

amino acid permease-associated protein

NC_014391
(Micromonospora aurantiaca ATCC 27029)

7e-60

62) JDM1_2341
( YP_003063925.1 )

amino acid transport protein

NC_012984
(Lactobacillus plantarum JDM1)

9e-58

63) lp_2920
( YP_004890510.1 )

proline-containing amino acid or peptide transport protein

NC_004567
(Lactobacillus plantarum WCFS1)

9e-58

64) Thexy_0991
( YP_004470697.1 )

amino acid permease

NC_015555
(Thermoanaerobacterium xylanolyticum LX-11)

2e-55

65) Tsac_2261
( YP_006392864.1 )

amino acid permease

NC_017992
(Thermoanaerobacterium saccharolyticum JW/SL-YS485)

2e-54

66) Aaci_2164
( YP_003185562.1 )

amino acid permease

NC_013205
(Alicyclobacillus acidocaldarius DSM 446)

2e-54

67) TC41_2287
( YP_005518708.1 )

amino acid permease

NC_017167
(Alicyclobacillus acidocaldarius Tc-4-1)

1e-51

68) L083_4715
( YP_007952705.1 )

transporter

NC_021191
(Actinoplanes sp. N902-109)

1e-48

69) Krad_0553
( YP_001360306.1 )

amino acid permease-associated protein

NC_009664
(Kineococcus radiotolerans SRS30216)

3e-36

• Sequence Alignments

1) SE451236_12760 in NC_021820


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 447/447 (100%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

2) SeAg_B1792 in NC_011149


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 447/447 (100%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

3) ycjj in NC_006905


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 447/447 (100%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

4) orf48 in NC_011294


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 447/447 (100%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

5) SPAB_01949 in NC_010102


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 447/447 (100%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

6) SPC_2350 in NC_012125


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 447/447 (100%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

7) orf48 in NC_016856


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 447/447 (100%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

8) UMN798_1437 in NC_017046


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 447/447 (100%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

9) STMMW_13841 in NC_016854


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 447/447 (100%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

10) orf48 in NC_003197


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 447/447 (100%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

11) SL1344_1313 in NC_016810


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 447/447 (100%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

12) STM474_1384 in NC_016857


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 447/447 (100%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

13) STMDT12_C13950 in NC_016860


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 447/447 (100%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

14) STU288_03215 in NC_021151


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 447/447 (100%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

15) STMUK_1345 in NC_016863


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 447/447 (100%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

16) CFSAN001921_10250 in NC_021814


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 447/447 (100%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

17) SEEB0189_12640 in NC_021844


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2338),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 446/447 (99%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMMLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLM+LDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

18) CFSAN002050_13290 in NC_021818


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 446/447 (99%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFADGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFA+GNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

19) SeSA_A1476 in NC_011094


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  619 bits (2337),  Expect = 2e-178, Method: Compositional matrix adjust.
 Identities = 445/447 (99%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMMLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLM+LDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFNSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FF+SQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

20) SBOV13771 in NC_022241


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  618 bits (2336),  Expect = 2e-178, Method: Compositional matrix adjust.
 Identities = 444/447 (99%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMMLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLM+LDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFTHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIF+HVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAIMCYRKAHNQNIAIDLEGKKLLD  447
            IGIAI+CYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

21) SeD_A1963 in NC_011205


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  618 bits (2336),  Expect = 2e-178, Method: Compositional matrix adjust.
 Identities = 445/447 (99%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYALVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLY+LVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVSLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVV+LCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

22) SNSL254_A1492 in NC_011080


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  618 bits (2334),  Expect = 3e-178, Method: Compositional matrix adjust.
 Identities = 446/447 (99%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISAIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVIS+IMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

23) SN31241_24510 in NC_021902


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  618 bits (2334),  Expect = 3e-178, Method: Compositional matrix adjust.
 Identities = 446/447 (99%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISAIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVIS+IMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

24) SEEH1578_16130 in NC_021810


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  617 bits (2331),  Expect = 4e-178, Method: Compositional matrix adjust.
 Identities = 445/447 (99%), Positives = 446/447 (99%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMMQDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLM+ DSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

25) SU5_01996 in NC_017623


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  617 bits (2331),  Expect = 4e-178, Method: Compositional matrix adjust.
 Identities = 445/447 (99%), Positives = 446/447 (99%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMMQDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLM+ DSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

26) CFSAN002069_02105 in NC_021812


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  617 bits (2331),  Expect = 4e-178, Method: Compositional matrix adjust.
 Identities = 445/447 (99%), Positives = 446/447 (99%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMMQDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLM+ DSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

27) SeHA_C1513 in NC_011083


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  617 bits (2331),  Expect = 4e-178, Method: Compositional matrix adjust.
 Identities = 445/447 (99%), Positives = 446/447 (99%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMMQDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLM+ DSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

28) CFSAN001992_04700 in NC_020307


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  617 bits (2331),  Expect = 5e-178, Method: Compositional matrix adjust.
 Identities = 444/447 (99%), Positives = 447/447 (100%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagICINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAG+CINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLLMLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRL++LDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

29) orf48 in NC_011274


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  617 bits (2330),  Expect = 6e-178, Method: Compositional matrix adjust.
 Identities = 445/447 (99%), Positives = 446/447 (99%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFAAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFF+AYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVVGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNV GIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

30) SBG_1218 in NC_015761


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  616 bits (2327),  Expect = 1e-177, Method: Compositional matrix adjust.
 Identities = 432/447 (97%), Positives = 446/447 (99%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAIGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPA+GFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGINYLGIQQTAKFDKLLVFIQLGVLAIFVLLIVRLIMTDSSQITLSFRP  180
            VWPLIYVAIGTG+NYLGIQQTAKFDKLLVFIQLG+LAIFVLLIVRL++ DSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGHAVSKatllalilatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGG+AVSKATLLAL+LATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVERFAEGNATNEAFFTIAGNIGGMWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNV+RFAEGNATNEAFFTIAGN+GG+WLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRLKAQRRIFAHIISPVMGMIVIGYVCLNMNIHALILGISWSA  420
            ALFAFFVVNLCVFILFNFR+KAQRRIFAH+ISP+MGMIVIGYVCLNMNIHALILGISW+A
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

31) SSPA1370 in NC_011147


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  616 bits (2329),  Expect = 6e-178, Method: Compositional matrix adjust.
 Identities = 444/447 (99%), Positives = 446/447 (99%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMMQDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLM+ DSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPNYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTP+YAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

32) SPA1474 in NC_006511


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  616 bits (2329),  Expect = 6e-178, Method: Compositional matrix adjust.
 Identities = 444/447 (99%), Positives = 446/447 (99%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMMQDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLM+ DSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPNYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTP+YAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

33) SPUCDC_1196 in NC_022221


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  613 bits (2317),  Expect = 6e-177, Method: Compositional matrix adjust.
 Identities = 444/447 (99%), Positives = 444/447 (99%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVVGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNV GIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAVLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKTESISTLVNFG  360
            VSRVLFSMGRDRMLPA LAHVHTTRKTPDYAILFTGGVTLLLSYLFSGK ESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

34) SPUL_1196 in NC_016831


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  613 bits (2317),  Expect = 6e-177, Method: Compositional matrix adjust.
 Identities = 444/447 (99%), Positives = 444/447 (99%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVVGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNV GIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAVLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKTESISTLVNFG  360
            VSRVLFSMGRDRMLPA LAHVHTTRKTPDYAILFTGGVTLLLSYLFSGK ESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

35) I137_05510 in NC_021984


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  613 bits (2317),  Expect = 6e-177, Method: Compositional matrix adjust.
 Identities = 444/447 (99%), Positives = 445/447 (99%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVVGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNV GIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSIGRDRMLPAVLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFS+GRDRMLPA LAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447
            IGIAILCYRKAHNQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

36) STY1743 in NC_003198


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  613 bits (2317),  Expect = 6e-177, Method: Compositional matrix adjust.
 Identities = 443/447 (99%), Positives = 445/447 (99%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIIRLMMQDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLI+RLM+ DSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAYNQNIAIDLEGKKLLD  447
            IGIAILCYRKA NQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

37) STBHUCCB_13380 in NC_016832


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  613 bits (2317),  Expect = 6e-177, Method: Compositional matrix adjust.
 Identities = 443/447 (99%), Positives = 445/447 (99%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIIRLMMQDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLI+RLM+ DSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAYNQNIAIDLEGKKLLD  447
            IGIAILCYRKA NQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

38) TY21A_06340 in NC_021176


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  613 bits (2317),  Expect = 6e-177, Method: Compositional matrix adjust.
 Identities = 443/447 (99%), Positives = 445/447 (99%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIIRLMMQDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLI+RLM+ DSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAYNQNIAIDLEGKKLLD  447
            IGIAILCYRKA NQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

39) t1247 in NC_004631


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  613 bits (2317),  Expect = 6e-177, Method: Compositional matrix adjust.
 Identities = 443/447 (99%), Positives = 445/447 (99%), Gaps = 0/447 (0%)

Query  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60
            MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST
Sbjct  1    MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYST  60

Query  61   LSQHIsssgsayayagVCINPAVGFLTGWILLLDYLLFPTlvavlggvavHAILPQIPVW  120
            LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW
Sbjct  61   LSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVW  120

Query  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIIRLMMQDSSQITLSFRP  180
            VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLI+RLM+ DSSQITLSFRP
Sbjct  121  VWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRP  180

Query  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRavskatllalvlatvlfii  240
            FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII
Sbjct  181  FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFII  240

Query  241  vvafaafatGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300
            VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA
Sbjct  241  VVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA  300

Query  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360
            VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG
Sbjct  301  VSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFG  360

Query  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420
            ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  421  IGIAILCYRKAYNQNIAIDLEGKKLLD  447
            IGIAILCYRKA NQNIAIDLEGKKLLD
Sbjct  421  IGIAILCYRKAHNQNIAIDLEGKKLLD  447

40) XCC2819 in NC_003902


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  259 bits (966),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 185/426 (44%), Positives = 313/426 (74%), Gaps = 4/426 (0%)

Query  24   RQLSLKDLLIYGLVFMVPTAPFSIFGGVFDISAGMVPLTYLVGFVAMLFTALSYQQMSQA  83
            ++LSL DL++YGLVFMVP AP S++G V+++S GMV+L Y++G +AM+FTA SY  +SQ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  84   FPVAGSVYAYVGRGLSGGMGFLAGWAILLDYLLVPTLIYVVGANAMHNVLPQVPQPAWIA  143
            ++ +GS YAY G  ++ ++GFL+GW +LLDYLL PTL+ V+G+ A+H +LPQ+P   W  
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  144  FFVVLNTVVNLRGIETTARANRFFLYAQlivlalfvvlatlaIQRGVNGAQWTLRPFYNP  203
            ++V + T VN  GI+ TA+ ++++++ QL +LA+FV+L    +  + +    ++RPF+++
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  204  QAFSPQLIFSALSVAVVSFLGFDAISTLSEEARGGNrvvgratllalvlvaglfvlQTWL  263
            Q F+P LI +A+SVA ++FLGFDAISTLSEE+ GG R V++ATLLALVL + LF++   +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  264  AALLQPHLQRYPSAQASNDAFFEIGRLIAGPWMQIVIALTVAISAAIANSLVAQAATSRL  323
            AA+   +++R++ ++A+N+AFF I+  ++G W+++ +++ VA+  A++N + AQ+A SR+
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRV  304

Query  324  LFAMARDRQLPAFLRYIHPRTGVPQRAILLVAALSMVLGEVFVGQIALLSSLCNVGALTA  383
            LF+M+RDR LPAFL  +H     P+ AIL+ ++++++L+ +F G+I  +S+L N GAL A
Sbjct  305  LFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFA  364

Query  384  F--VLLHVAVLWHFRAHGRKVL--HGVVPVIGIVILAYVLINADLHAQLGGSAWMVVGLA  439
            F  V L V +L +FR  +++ +  H + P++G+++++YV +N ++HA + G +W  +G+A
Sbjct  365  FFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAAIGIA  424

Query  440  VLAFLK  445
            +L + K
Sbjct  425  ILCYRK  430

41) Sros_2324 in NC_013595


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  253 bits (944),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 168/411 (41%), Positives = 290/411 (71%), Gaps = 6/411 (1%)

Query  18   RSLSFTDLLVYGLIFMVPIAPFGIFGGVFQASGGMVALAYVIGMVAMAFTALSYAQMAKA  77
            + LS+TDL++YGL+FMVPIAP +++G V++ S GMVAL Y+IG +AM FTA SY+ +++ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  78   FPMAGSVYTYAGRGITGTVGFLAGWVILLDYVLVPALLYLIASAAMTAILPVIPIWGWLI  137
            ++ +GS Y+YAG  I  +VGFL+GW++LLDY+L P+L+ ++++ A+ AILP IP+W W +
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  138  VFVILNTVVNYAGIQMTARITKIMLIGELIVLAIFLVIGLGALAMGKAQAG-ALTPLFDS  196
            ++V + T VNY GIQ TA++ K++++ +L +LAIF+++ +  + ++ +Q   ++ P+FDS
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  197  GTFSWPLVFGAVSVAVLSFLGFDGISMLAEESKADSRKIGKSMVAALGLAGALFIVQTWV  256
              F+  L+  A+SVA L+FLGFD+IS L+EES +++R ++K+ + AL LA  LFI+    
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  257  GALLTPNRAELLAKGDPEGTAFYDMAEFAGGHWLSVLTAVATAIAWGFANSLVAQAATSR  316
            +A ++    + +A G++   AF+ +A   GG WL V  ++  A+  + +N + AQ+A SR
Sbjct  245  AA-FATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSR  303

Query  317  LLYAMARDRQLPAFLAKVHPRHKVPVNATLLVAVISLAVGLYLTTREDGIPLISSLVNFG  376
            +L++M+RDR LPAFLA VH  +K P  A L+ + ++L ++  ++ + ++   IS+LVNFG
Sbjct  304  VLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIES---ISTLVNFG  360

Query  377  AMTAFLALHVSVVVHYVIRRRSRDW-WRHLIAPVIGFAILIYVVINANIAA  426
            A+ AF+ +++ V + + +R +++ +   H+I+P++G  ++ YV +N NI A
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHA  411

42) BN6_35750 in NC_019673


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  247 bits (923),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 175/418 (42%), Positives = 299/418 (72%), Gaps = 6/418 (1%)

Query  18   RSLGFKDLLVYGLIFMVPIAPFGIFGSVFQGSGGMVALAYAIGMLAMLFTAGSYAQMSKA  77
            + L++ DL++YGL+FMVPIAP +++G V++ S GMVAL Y IG +AM+FTA SY+ +S+ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  78   FPIAGSVYTYAGRGIGAPVGFLAGWMILLDYVLVPGLLYLIAGVAMNSLVPAVPVWLWLI  137
            ++ +GS Y+YAG  I ++VGFL+GW++LLDY+L P L+ +++GVA+++++P +PVW+W +
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  138  AFVLLNTAVNYLGIEMTAKVNRVMLVAQLIILAIF-LVVGVVALTQGKGRGFSFDPLFNS  196
             +V + T+VNYLGI+ TAK +++++  QL ILAIF L++  + L ++    +SF P+F+S
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  197  ATFSWPLVFGAVSIAVLSFLGFDGISTLAEENRDSARAIGRSMVAALVVTGLLFITQTWV  256
              F+  L+  A+S+A L+FLGFD+ISTL+EE+ +++RA++++ + ALV++ +LFI     
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  257  ASLLVEDPDGLIANGDAGGTAFYDAARSAGGGWlavltaaatavSWGFANSLVAQAATSR  316
            A++   + D + A+G+A   AF+  A + GG WL V  +   A   + +N + AQ+A SR
Sbjct  245  AAFATGNVDRF-AEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSR  303

Query  317  LLFAMARDRQLPKFLAKIHPTRRIPVNATllvagvslllglYMQSREDGITLLSSLVNFG  376
            +LF+M+RDR LP FLA +H TR+ P  A L+ +GV+LLL+    ++ ++I   S+LVNFG
Sbjct  304  VLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESI---STLVNFG  360

Query  377  AMTAFLVLHVSVVAHYVIRRRSRDW-WKHLIAPVIGFGILAYVVINAKVAAQTVGFVW  433
            A+ AF+V+++ V   + +R +++ +   H+I+P++G  +++YV +N ++ A  +G+ W
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISW  418

43) Bcoa_0710 in NC_016023


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  243 bits (908),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 179/437 (41%), Positives = 311/437 (72%), Gaps = 4/437 (0%)

Query  21   RSLSFWDLLIYGMVFMVPIAPFGIYGSVAQGSNGMVALTYLIGMVGMIFTAFSYARMSEA  80
            + LS+ DL++YG+VFMVPIAP ++YG V + S+GMVAL Y+IG ++M+FTA+SY+ +S+ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  81   FPIAGSVYSYAQRGINDSVGFIAGWLILLDYIFVPALLYLVSASALHDIVPQIPIVVWAV  140
            ++ +GS Y+YA   IN +VGF++GW++LLDY++ P+L+ ++++ A+H I+PQIP+ VW++
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  141  LFIAINTVINVRGIEFTAKANKiivilelivlaiflavGVTAIIKGINGADFTMKPLYDH  200
            +++AI T +N  GI+ TAK +K++V+++L +LAIF+ + V  ++ + +   ++ +P++D 
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  201  SHFSMNVVMGAVSIAVLSFLGFDGISTLAEETKDGSKSIGKACVYSLLAVGALFIIQTWV  260
              F+  ++  A+S+A L+FLGFD+ISTL+EE+ +G+++++KA + +L+    LFII    
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  261  AALIWPDYHAF---KNPDTAFYQIAEIAGGTWLKVLTIVATAFSWGIANALVAQAAISRI  317
            AA+   + + F   +  + AF+ IA   GG WLKV   +  AF  +++N + AQ+A+SR+
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRV  304

Query  318  LYSMARDRKLPGFLAKVHPKFQTPYLSTLLIAVVSVIVTAFFSSQIGKLSSVVNFGALSS  377
            L+SM+RDR LP+FLA VH   +TP  + L+ + V+++++ +FS++I  +S++VNFGAL +
Sbjct  305  LFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFA  364

Query  378  FLFLHLSVMNYF-LRKKKSKNYVAHLLMPLIGFAVIGYVWINLDPLSKKLGFIWLAIGIV  436
            F+ ++L V   F +R K  +   AH++ P++G  VIGYV +N++  +  LG+ W AIGI 
Sbjct  365  FFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAAIGIA  424

Query  437  YLIVLKLFKKDTALNLE  453
             L   K  +++ A++LE
Sbjct  425  ILCYRKAHNQNIAIDLE  441

44) Micau_2542 in NC_014391


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  242 bits (903),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 282/411 (69%), Gaps = 7/411 (1%)

Query  18   RQLRFRDLLAYGLVYMVPIAPMAIFGSVYTGSGGMVALAYAIGVVALVFTAFSYAQMVKA  77
            ++L + DL+ YGLV+MVPIAP++++G VY  S GMVAL Y IG +A+ FTA+SY+ + + 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  78   FPMSGSVYNYAGRGISPPVGFLAGWVILLDYVLVPGLLYLVASVAMHSTVPAVPVWLWLL  137
            ++ SGS Y YAG  I+P+VGFL+GW++LLDY+L P L+ ++++VA+H+ +P +PVW+W L
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  138  GFVAVNTVVNSVGIRMTAVVTRVMLVGELIVLALFLVVAGW--ALATGTGRFSWDAFYNA  195
             +VA+ T VN +GI+ TA   ++++  +L +LA+F+++  +   L ++   +S  +F+++
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  196  DTFTWSLVAGAVSIAVLSFLGFDGISMLAEETRDGARQIGRAMaavlvlagvlFIAQTWL  255
            + FT +L+A A+S+A L+FLGFD+IS L+EE+ +G+R +++A    LVLA VLFI    +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  256  AAMLVPNPGGLLAEGDVHGTAFYDAAAVAGGSWLATVCAVATAIAWGLPNSMVAQVATSR  315
            AA +     + +AEG+    AF+  A+  GG WL    ++  A+  ++ N + AQ A SR
Sbjct  245  AA-FATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSR  303

Query  316  LLYAMARDRQLPAFLAKVSVRRSVPINATLLTGVVSLALGLYMATRSDGITLLSSLINFG  375
            +L++M+RDR LPAFLA V   R  P  A L+TG V+L L+   + + ++I   S+L+NFG
Sbjct  304  VLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESI---STLVNFG  360

Query  376  AMVAFlvlhvsvvvhhlIRRRSGNW-FAHLLMPAAGFVILAYVVVNANIAA  425
            A+ AF+V+++ V +   +R ++  + FAH++ P  G ++++YV +N NI A
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHA  411

45) Sare_1963 in NC_009953


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  241 bits (900),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 169/411 (42%), Positives = 288/411 (71%), Gaps = 7/411 (1%)

Query  18   RQLRFRDLLAYGLVYMVPIAPMAIFGSVYAGSGGMVALAYVIGVVALVFTAFSYAQMVRA  77
            ++L + DL+ YGLV+MVPIAP++++G VY  S GMVAL Y+IG +A+ FTA+SY+ + + 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  78   FPMSGSVYNYAGRGISPPVGFLAGWVILLDYVLVPGLLYLVASVAMHATVPVVPVWLWLI  137
            ++ SGS Y YAG  I+P+VGFL+GW++LLDY+L P L+ ++++VA+HA +P +PVW+W +
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  138  GFVAVNTIVNSVGIRMTAMVTRVMLVGELIVLAIFLAVAGW--ALASGRGRFSWEAFYNA  195
             +VA+ T VN +GI+ TA   ++++  +L +LAIF+ +  +   L S++  +S  +F+++
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  196  NTFTWSLVAGAVSIAVLSFLGFDGISMLAEEAKGGSRQIGRAMaavlvlagvlFIAQTWL  255
            + FT +L+A A+S+A L+FLGFD+IS L+EE+ GG+R +++A    LVLA VLFI    +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  256  AAMLVAEPASLRGDGDPDGTAFYEAAAVAGGGWLATLCAVATAIAWGLPNSMVAQVATSR  315
            AA   ++   + ++G++   AF+  A+  GG WL    ++  A+  ++ N + AQ A SR
Sbjct  245  AAFATGNVDRF-AEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSR  303

Query  316  LLYAMARDRQLPAFLAKVSVRRSVPINATLLTGAVSLVLGLSMAARADGITLLSSLINFG  375
            +L++M+RDR LPAFLA V   R  P  A L+TG+V+L+L+   +++ ++I   S+L+NFG
Sbjct  304  VLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESI---STLVNFG  360

Query  376  AMVAFlvlhvsvivhhlirrrSRNW-WAHLVMPAVGFAILSYVVVNADIAA  425
            A+ AF+V+++ V++   +R +++ +  AH++ P +G  +++YV +N +I A
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHA  411

46) XCV3136 in NC_007508


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  241 bits (899),  Expect = 8e-65, Method: Compositional matrix adjust.
 Identities = 185/443 (42%), Positives = 321/443 (73%), Gaps = 6/443 (1%)

Query  24   RQLTLKDLLIYGLVCMVPTAPFSIFGGVFDISAGMVPLTYLVGFVAMLFTALSYQQMSQA  83
            ++L+L DL++YGLV MVP AP S++G V+++S GMV+L Y++G +AM+FTA SY  +SQ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  84   FPVAGSVYAYVGRGLSSGMGFLAGWAIlldyllvptllyvvGANAMQTVLPAIPQPAWIG  143
            ++ +GS YAY G  +++++GFL+GW +LLDYLL PTL+ V+G+ A++++LP IP   W  
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  144  FFVVLNTVVNLRGIETTARANRffllaqllvlavfvvlatlaIQRGVNGAHWSWRPLYNP  203
            ++V + T VN  GI+ TA+ ++++++ QL +LA+FV+L    +  + +    S RP++++
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  204  QAFSPQLIFSALSVAVVSFLGFDAISTMSEEARGGNRVVGRATLLALLIVAGLFILQTWL  263
            Q F+P LI +A+SVA ++FLGFDAIST+SEE+ GG R V++ATLLAL++ + LFI+   +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  264  AALLQPTLQRYPSAQASNDAFFEIGRLIAGPWLQIVIALTVAISAAIANSLVAQAATSRL  323
            AA+    ++R++ ++A+N+AFF I+  ++G WL++ +++ VA+  A++N + AQ+A SR+
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRV  304

Query  324  LFAMARDRQLPGFLRYIHPRTGVPQRAILLVAGLSLVLGEVFVGQIALLSSLCNVGALTA  383
            LF+M+RDR LP+FL  +H     P+ AIL+ +G++L+L+ +F G+I  +S+L N GAL A
Sbjct  305  LFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFA  364

Query  384  FVLLHIAV--LWHFRTHG-RRVL-HGVVPLIGIVILAYVLLNADLHAQLGGAAWMAVGLT  439
            F ++++ V  L +FR  + RR++ H + P++G+++++YV LN ++HA + G +W A+G++
Sbjct  365  FFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAAIGIA  424

Query  440  VLAFLKLSGR--STELRASDALE  460
            +L + K   +  + +L +   L+
Sbjct  425  ILCYRKAHNQNIAIDLEGKKLLD  447

47) ML5_5983 in NC_014815


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  239 bits (893),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 176/439 (41%), Positives = 300/439 (69%), Gaps = 9/439 (2%)

Query  18   RHLRFRDLVAYGLVYMVPIAPMAIFGSVYAGSGGMvalayavgvvalvFTAFSYAQMVKA  77
            + L + DLV YGLV+MVPIAP++++G VY  S GMVAL Y +G +A+ FTA+SY+ + + 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  78   FPMSGSVYNYAGRGISAPVGFLAGWVILLDYVLVPGLLYLVASVAMHATVPAVPVWLWLL  137
            ++ SGS Y YAG  I+++VGFL+GW++LLDY+L P L+ ++++VA+HA +P +PVW+W L
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  138  GFVAVNTVVNSVGIRMTAMVTRVMLVGELIVLAVFLAVAGW--ALASGRGRFSWDAFYNA  195
             +VA+ T VN +GI+ TA   ++++  +L +LA+F+ +  +   L S++  +S  +F+++
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  196  DTFTWSVVAGAVSIAVLSFLGFDGISMLAEETRGGSRQIGRAMAAVLILAGVLFIAQTWL  255
            + FT +++A A+S+A L+FLGFD+IS L+EE+ GG+R +++A    L+LA VLFI    +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  256  AAMLVPDPGVLLAQGDPNGTAFYDAATVAGGGWLATLCAVATAIAWGLPNSMVAQVATSR  315
            AA    + +  +A+G++   AF+  A   GG WL    ++  A+  ++ N + AQ A SR
Sbjct  245  AAFATGNVDR-FAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSR  303

Query  316  LLYAMARDRQLPAFLARVSVRRNVPINATLLTGAVSLALGLYMATRADGITLLSSLINFG  375
            +L++M+RDR LPAFLA+V   R+ P  A L+TG+V+L L+   + + ++I   S+L+NFG
Sbjct  304  VLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESI---STLVNFG  360

Query  376  AMVAFlvlhvsvvvhhlIRRRSGNW-WAHLVMPGIGFAILAYVVVNANIAAQRLGLAWLA  434
            A+ AF+V+++ V +   +R ++  +  AH++ P +G  +++YV +N NI A  LG++W A
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  435  LGVVILAGLYATGRRPSLS  453
            +G+ IL   Y  ++  +++
Sbjct  421  IGIAILC--YRKAHNQNIA  437

48) XAC2989 in NC_003919


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  239 bits (891),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 182/433 (43%), Positives = 316/433 (73%), Gaps = 4/433 (0%)

Query  24   RQLTLKDLLIYGLVCMVPTAPFSIFGGVFDISAGMVPLTYLVGFVAMLFTALSYQQMSQA  83
            ++L+L DL++YGLV MVP AP S++G V+++S GMV+L Y++G +AM+FTA SY  +SQ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  84   FPVAGSVYAYVGRGLSSGMGFLAGWAIlldyllvptllyvvGANAMHTVLPAVPQPAWIA  143
            ++ +GS YAY G  +++++GFL+GW +LLDYLL PTL+ V+G+ A+H++LP +P   W  
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  144  FFVVLNTVVNLRGIETTARANRffllaqllvlavfvvlatlaIQRGVNGAHWSWRPLYNP  203
            ++V + T VN  GI+ TA+ ++++++ QL +LA+FV+L    +  + +    S RP++++
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  204  QAFSPQLIFSALSVAVVSFLGFDAISTMSEEARGGNRVVGRATLLALLIVAGLFVLQTWL  263
            Q F+P LI +A+SVA ++FLGFDAIST+SEE+ GG R V++ATLLAL++ + LF++   +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  264  AALLQPTLQRYPSAQASNDAFFEIGRLIAGPWLQIVIALTVAISAAIANSLVAQAATSRL  323
            AA+    ++R++ ++A+N+AFF I+  ++G WL++ +++ VA+  A++N + AQ+A SR+
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRV  304

Query  324  LFAMARDRQLPGFLRYIHPRTGVPQRAILLVAGLSLVLGEVFVGQIALLSSLCNVGALTA  383
            LF+M+RDR LP+FL  +H     P+ AIL+ +G++L+L+ +F G+I  +S+L N GAL A
Sbjct  305  LFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFA  364

Query  384  FVLLHIAV--LWHFRTQG-RHVL-HGAVPLIGIVILAYVLLNADLHAQLGGAAWMAVGLA  439
            F ++++ V  L +FR ++ R+++ H   P++G+++++YV LN ++HA + G +W A+G+A
Sbjct  365  FFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAAIGIA  424

Query  440  VLAFLKLSGRSTE  452
            +L + K   ++  
Sbjct  425  ILCYRKAHNQNIA  437

49) XAC29_15205 in NC_020800


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  239 bits (891),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 182/433 (43%), Positives = 316/433 (73%), Gaps = 4/433 (0%)

Query  24   RQLTLKDLLIYGLVCMVPTAPFSIFGGVFDISAGMVPLTYLVGFVAMLFTALSYQQMSQA  83
            ++L+L DL++YGLV MVP AP S++G V+++S GMV+L Y++G +AM+FTA SY  +SQ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  84   FPVAGSVYAYVGRGLSSGMGFLAGWAIlldyllvptllyvvGANAMHTVLPAVPQPAWIA  143
            ++ +GS YAY G  +++++GFL+GW +LLDYLL PTL+ V+G+ A+H++LP +P   W  
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  144  FFVVLNTVVNLRGIETTARANRffllaqllvlavfvvlatlaIQRGVNGAHWSWRPLYNP  203
            ++V + T VN  GI+ TA+ ++++++ QL +LA+FV+L    +  + +    S RP++++
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  204  QAFSPQLIFSALSVAVVSFLGFDAISTMSEEARGGNRVVGRATLLALLIVAGLFVLQTWL  263
            Q F+P LI +A+SVA ++FLGFDAIST+SEE+ GG R V++ATLLAL++ + LF++   +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  264  AALLQPTLQRYPSAQASNDAFFEIGRLIAGPWLQIVIALTVAISAAIANSLVAQAATSRL  323
            AA+    ++R++ ++A+N+AFF I+  ++G WL++ +++ VA+  A++N + AQ+A SR+
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRV  304

Query  324  LFAMARDRQLPGFLRYIHPRTGVPQRAILLVAGLSLVLGEVFVGQIALLSSLCNVGALTA  383
            LF+M+RDR LP+FL  +H     P+ AIL+ +G++L+L+ +F G+I  +S+L N GAL A
Sbjct  305  LFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFA  364

Query  384  FVLLHIAV--LWHFRTQG-RHVL-HGAVPLIGIVILAYVLLNADLHAQLGGAAWMAVGLA  439
            F ++++ V  L +FR ++ R+++ H   P++G+++++YV LN ++HA + G +W A+G+A
Sbjct  365  FFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAAIGIA  424

Query  440  VLAFLKLSGRSTE  452
            +L + K   ++  
Sbjct  425  ILCYRKAHNQNIA  437

50) potE in NC_020815


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  239 bits (891),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 182/433 (43%), Positives = 316/433 (73%), Gaps = 4/433 (0%)

Query  24   RQLTLKDLLIYGLVCMVPTAPFSIFGGVFDISAGMVPLTYLVGFVAMLFTALSYQQMSQA  83
            ++L+L DL++YGLV MVP AP S++G V+++S GMV+L Y++G +AM+FTA SY  +SQ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  84   FPVAGSVYAYVGRGLSSGMGFLAGWAIlldyllvptllyvvGANAMHTVLPAVPQPAWIA  143
            ++ +GS YAY G  +++++GFL+GW +LLDYLL PTL+ V+G+ A+H++LP +P   W  
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  144  FFVVLNTVVNLRGIETTARANRffllaqllvlavfvvlatlaIQRGVNGAHWSWRPLYNP  203
            ++V + T VN  GI+ TA+ ++++++ QL +LA+FV+L    +  + +    S RP++++
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  204  QAFSPQLIFSALSVAVVSFLGFDAISTMSEEARGGNRVVGRATLLALLIVAGLFVLQTWL  263
            Q F+P LI +A+SVA ++FLGFDAIST+SEE+ GG R V++ATLLAL++ + LF++   +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  264  AALLQPTLQRYPSAQASNDAFFEIGRLIAGPWLQIVIALTVAISAAIANSLVAQAATSRL  323
            AA+    ++R++ ++A+N+AFF I+  ++G WL++ +++ VA+  A++N + AQ+A SR+
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRV  304

Query  324  LFAMARDRQLPGFLRYIHPRTGVPQRAILLVAGLSLVLGEVFVGQIALLSSLCNVGALTA  383
            LF+M+RDR LP+FL  +H     P+ AIL+ +G++L+L+ +F G+I  +S+L N GAL A
Sbjct  305  LFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFA  364

Query  384  FVLLHIAV--LWHFRTQG-RHVL-HGAVPLIGIVILAYVLLNADLHAQLGGAAWMAVGLA  439
            F ++++ V  L +FR ++ R+++ H   P++G+++++YV LN ++HA + G +W A+G+A
Sbjct  365  FFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAAIGIA  424

Query  440  VLAFLKLSGRSTE  452
            +L + K   ++  
Sbjct  425  ILCYRKAHNQNIA  437

51) XCR_3192 in NC_017271


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  238 bits (889),  Expect = 5e-64, Method: Compositional matrix adjust.
 Identities = 186/426 (44%), Positives = 315/426 (74%), Gaps = 4/426 (0%)

Query  24   RQLSLKDLLIYGLVFMVPTAPFSIFGGVFDISAGMVPLTYLVGFVAMLFTALSYQQMSQA  83
            ++LSL DL++YGLVFMVP AP S++G V+++S GMV+L Y++G +AM+FTA SY  +SQ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  84   FPVAGSVYAYVGRGLSGGMGFLAGWAIlldyllvptllyvvGANAMHNVLPQVPQPAWIA  143
            ++ +GS YAY G  ++ ++GFL+GW +LLDYLL PTL+ V+G+ A+H +LPQ+P   W  
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  144  FFVVLNTVVNLRGIETTARANRVFLYAQlivlalfvvlatlaIQRGVNGAQWTLRPFYNP  203
            ++V + T VN  GI+ TA+ ++++++ QL +LA+FV+L    +  + +    ++RPF+++
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  204  QAFSPQLIFSALSVAVVSFLGFDAISTLSEETRGGNrvvgratllalvlvaglfvlQTWL  263
            Q F+P LI +A+SVA ++FLGFDAISTLSEE+ GG R V++ATLLALVL + LF++   +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  264  AALLQPHLQRYPNAQASNDAFFEIGRLIAGPWMQIVIALTVAISAAIANSLVAQAATSRL  323
            AA+   +++R+++++A+N+AFF I+  ++G W+++ +++ VA+  A++N + AQ+A SR+
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRV  304

Query  324  LFAMARDRQLPAFLRYIHPRTGVPQRAILLVAALSMVLGEVFVGQIALLSSLCNVGALTA  383
            LF+M+RDR LPAFL  +H     P+ AIL+ ++++++L+ +F G+I  +S+L N GAL A
Sbjct  305  LFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFA  364

Query  384  F--VLLHVAVLWHFRAHG-RKVL-HGVVPVIGIVILAYVLINADLHAQLGGSAWMVVGLA  439
            F  V L V +L +FR  + R+++ H + P++G+++++YV +N ++HA + G +W  +G+A
Sbjct  365  FFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAAIGIA  424

Query  440  VLAFLK  445
            +L + K
Sbjct  425  ILCYRK  430

52) XC_1293 in NC_007086


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 186/426 (44%), Positives = 314/426 (74%), Gaps = 4/426 (0%)

Query  24   RQLSLKDLLIYGLVFMVPTAPFSIFGGVFDISAGMVPLTYLVGFVAMLFTALSYQQMSQA  83
            ++LSL DL++YGLVFMVP AP S++G V+++S GMV+L Y++G +AM+FTA SY  +SQ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  84   FPVAGSVYAYVGRGLSGGMGFLAGWAIlldyllvptllyvvGANAMHNVLPQVPQPAWIA  143
            ++ +GS YAY G  ++ ++GFL+GW +LLDYLL PTL+ V+G+ A+H +LPQ+P   W  
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  144  FFVVLNTVVNLRGIETTARANRFFLYAQlivlalfvvlatlaIQRGVNGAQWTLRPFYNP  203
            ++V + T VN  GI+ TA+ ++++++ QL +LA+FV+L    +  + +    ++RPF+++
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  204  QAFSPQLIFSALSVAVVSFLGFDAISTLSEETRGGNrvvgratllalvlvaglfvlQTWL  263
            Q F+P LI +A+SVA ++FLGFDAISTLSEE+ GG R V++ATLLALVL + LF++   +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  264  AALLQPHLQRYPSAQASNDAFFEIGRLIAGPWMQIVIALTVAISAAIANSLVAQAATSRL  323
            AA+   +++R++ ++A+N+AFF I+  ++G W+++ +++ VA+  A++N + AQ+A SR+
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRV  304

Query  324  LFAMARDRQLPAFLRYIHPRTGVPQRAILLVAALSMVLGEVFVGQIALLSSLCNVGALTA  383
            LF+M+RDR LPAFL  +H     P+ AIL+ ++++++L+ +F G+I  +S+L N GAL A
Sbjct  305  LFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFA  364

Query  384  F--VLLHVAVLWHFRAHG-RKVL-HGVVPVIGIVILAYVLINADLHAQLGGSAWMVVGLA  439
            F  V L V +L +FR  + R+++ H + P++G+++++YV +N ++HA + G +W  +G+A
Sbjct  365  FFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAAIGIA  424

Query  440  VLAFLK  445
            +L + K
Sbjct  425  ILCYRK  430

53) XOC_1421 in NC_017267


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  235 bits (878),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 181/433 (42%), Positives = 315/433 (73%), Gaps = 4/433 (0%)

Query  24   RQLTLKDLLIYGLVSMVPTAPFSIFGGVFDISAGMVPLTYLVGFMAMLFTALSYQQMSQA  83
            ++L+L DL++YGLV MVP AP S++G V+++S GMV+L Y++G +AM+FTA SY  +SQ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  84   FPVAGSVYAYVGRGLNSGMGFLAGWAIlldyllvptllyvvGANAMYNVVPAVPQPVWIG  143
            ++ +GS YAY G  +N+++GFL+GW +LLDYLL PTL+ V+G+ A+  ++P +P  VW  
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  144  FFVVLNTVVNLRGIETTARANRffllgqllvlavfvvlatlaIQRGVNGAHWSWRPIYDP  203
            ++V + T VN  GI+ TA+ ++++++ QL +LA+FV+L    +  + +    S RP++D+
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  204  QAFSPHVIFSALSVAVVSFLGFDAISTLSEEARGGNRVVGRATLLALLIVAGVFVLQTWL  263
            Q F+P +I +A+SVA ++FLGFDAISTLSEE+ GG R V++ATLLAL++ + +F++   +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  264  AALLQPTLQRYPSAQASNDAFFEIGRLIAGPWLQIVIALTVAISAAIANSLVAQAATSRL  323
            AA+    ++R++ ++A+N+AFF I+  ++G WL++ +++ VA+  A++N + AQ+A SR+
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRV  304

Query  324  LFAMARDRQLPAFLRYIHPRTGVPQRAILLVAGLSIVLGEVFVGQIALLSSLCNVGALTA  383
            LF+M+RDR LPAFL  +H     P+ AIL+ +G++++L+ +F G+I  +S+L N GAL A
Sbjct  305  LFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFA  364

Query  384  FVLLHIAV--LWHFRAQG-RRVL-HGLAPLIGIVILAYVLLNADTHAQLGGTAWMVVGLT  439
            F ++++ V  L +FR ++ RR++ H ++P++G+++++YV LN + HA + G +W  +G++
Sbjct  365  FFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAAIGIA  424

Query  440  VLAFLKLSGRSTE  452
            +L + K   ++  
Sbjct  425  ILCYRKAHNQNIA  437

54) XACM_2923 in NC_016010


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  235 bits (876),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 184/443 (42%), Positives = 319/443 (73%), Gaps = 6/443 (1%)

Query  24   RQLTLKDLLIYGLVCMVPTAPFSIFGGVFDISAGMVPLTYLVGFVAMLFTALSYQQMSQA  83
            ++L+L DL++YGLV MVP AP S++G V+++S GMV+L Y++G +AM+FTA SY  +SQ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  84   FPVAGSVYAYVGRGLSSGMGFLAGWAIlldyllvptllyvvGANAMQTVLPAIPQPAWIG  143
            ++ +GS YAY G  +++++GFL+GW +LLDYLL PTL+ V+G+ A++++LP IP   W  
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  144  FFVVLNTVVNLRGIETTARANRffllaqllvlavfvvlatlaIQRGVNGAHWSWRPLYNP  203
            ++V + T VN  GI+ TA+ ++++++ QL +LA+FV+L    +  + +    S RP++++
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  204  QAFSPQLIFSALSVAVVSFLGFDAISTMSEEARGGNRVVGRATLLALLIVAGLFILQTWL  263
            Q F+P LI +A+SVA ++FLGFDAIST+SEE+ GG R V++ATLLAL++ + LFI+   +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  264  AALLQPTLQCYPSPQASNDAFFEIGRLIAGPWLQIVIALTVAISAAIANSLVAQAATSRL  323
            AA+    ++ ++  +A+N+AFF I+  ++G WL++ +++ VA+  A++N + AQ+A SR+
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRV  304

Query  324  LFAMARDRQLPGFLRYIHPRTGVPQRAILLVAGLSLVLGEVFVGQIALLSSLCNVGALTA  383
            LF+M+RDR LP+FL  +H     P+ AIL+ +G++L+L+ +F G+I  +S+L N GAL A
Sbjct  305  LFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFA  364

Query  384  FVLLHIAV--LWHFRTHG-RRVL-HGMVPLIGIVILAYVLLNADLHAQLGGAAWMAVGLT  439
            F ++++ V  L +FR  + RR++ H + P++G+++++YV LN ++HA + G +W A+G++
Sbjct  365  FFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAAIGIA  424

Query  440  VLAFLKLSGR--STELRASDALE  460
            +L + K   +  + +L +   L+
Sbjct  425  ILCYRKAHNQNIAIDLEGKKLLD  447

55) XOO_1166 in NC_007705


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  235 bits (876),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 179/433 (42%), Positives = 314/433 (73%), Gaps = 4/433 (0%)

Query  24   RQLTLKDLLIYGLVSMVPTAPFSIFGGVFDISAGMVPLTYLVGFVAMLFTALSYQQMSQA  83
            ++L+L DL++YGLV MVP AP S++G V+++S GMV+L Y++G +AM+FTA SY  +SQ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  84   FPVAGSVYAYVGRGLNSGMGFLAGWAIlldyllvptllyvvGANAMYNVVPAVPQPAWIG  143
            ++ +GS YAY G  +N+++GFL+GW +LLDYLL PTL+ V+G+ A+  ++P +P   W  
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  144  FFVVLNTVVNLRGIETTARANRffllgqlvvlavflvlatlaIQRGVNGAHWSWRPIYDP  203
            ++V + T VN  GI+ TA+ ++++++ QL +LA+F++L    +  + +    S RP++D+
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  204  QAFSPHVIFSALSVAVVSFLGFDAISTLSEEARGGNRVVGRATLLALLIVAGVFVLQTWL  263
            Q F+P +I +A+SVA ++FLGFDAISTLSEE+ GG R V++ATLLAL++ + +F++   +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  264  AALLQPTLQRYPSAQASNDAFFEIGRLIAGPWLQIVIALTVAISAAIANSLVAQAATSRL  323
            AA+    ++R++ ++A+N+AFF I+  ++G WL++ +++ VA+  A++N + AQ+A SR+
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRV  304

Query  324  LFAMARDRQLPAFLRYIHPRTAVPQRAILLVAGLSIVLGEVFVGQIALLSSLCNVGALTA  383
            LF+M+RDR LPAFL  +H     P+ AIL+ +G++++L+ +F G+I  +S+L N GAL A
Sbjct  305  LFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFA  364

Query  384  FVLLHIAV--LWHFRAQG-RRVL-HGLAPLIGIVILAYVLLNADTHAQLGGTAWMVVGLT  439
            F ++++ V  L +FR ++ RR++ H ++P++G+++++YV LN + HA + G +W  +G++
Sbjct  365  FFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAAIGIA  424

Query  440  VLAFLKLSGRSTE  452
            +L + K   ++  
Sbjct  425  ILCYRKAHNQNIA  437

56) PXO_02208 in NC_010717


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  235 bits (876),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 179/433 (42%), Positives = 314/433 (73%), Gaps = 4/433 (0%)

Query  24   RQLTLKDLLIYGLVSMVPTAPFSIFGGVFDISAGMVPLTYLVGFVAMLFTALSYQQMSQA  83
            ++L+L DL++YGLV MVP AP S++G V+++S GMV+L Y++G +AM+FTA SY  +SQ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  84   FPVAGSVYAYVGRGLNSGMGFLAGWAIlldyllvptllyvvGANAMYNVVPAVPQPAWIG  143
            ++ +GS YAY G  +N+++GFL+GW +LLDYLL PTL+ V+G+ A+  ++P +P   W  
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  144  FFVVLNTVVNLRGIETTARANRffllgqlvvlavflvlatlaIQRGVNGAHWSWRPIYDP  203
            ++V + T VN  GI+ TA+ ++++++ QL +LA+F++L    +  + +    S RP++D+
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  204  QAFSPHVIFSALSVAVVSFLGFDAISTLSEEARGGNRVVGRATLLALLIVAGVFVLQTWL  263
            Q F+P +I +A+SVA ++FLGFDAISTLSEE+ GG R V++ATLLAL++ + +F++   +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  264  AALLQPTLQRYPSAQASNDAFFEIGRLIAGPWLQIVIALTVAISAAIANSLVAQAATSRL  323
            AA+    ++R++ ++A+N+AFF I+  ++G WL++ +++ VA+  A++N + AQ+A SR+
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRV  304

Query  324  LFAMARDRQLPAFLRYIHPRTAVPQRAILLVAGLSIVLGEVFVGQIALLSSLCNVGALTA  383
            LF+M+RDR LPAFL  +H     P+ AIL+ +G++++L+ +F G+I  +S+L N GAL A
Sbjct  305  LFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFA  364

Query  384  FVLLHIAV--LWHFRAQG-RRVL-HGLAPLIGIVILAYVLLNADTHAQLGGTAWMVVGLT  439
            F ++++ V  L +FR ++ RR++ H ++P++G+++++YV LN + HA + G +W  +G++
Sbjct  365  FFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAAIGIA  424

Query  440  VLAFLKLSGRSTE  452
            +L + K   ++  
Sbjct  425  ILCYRKAHNQNIA  437

57) xccb100_1341 in NC_010688


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  234 bits (872),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 185/426 (44%), Positives = 313/426 (74%), Gaps = 4/426 (0%)

Query  92   RQLSLKDLLIYGLVFMVPTAPFSIFGGVFDISAGMVPLTYLVGFVAMLFTALSYQQMSQA  151
            ++LSL DL++YGLVFMVP AP S++G V+++S GMV+L Y++G +AM+FTA SY  +SQ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  152  FPVAGSVYAYVGRGLSGGMGFLAGWAIlldyllvptllyvvGANAMHNVLPQVPQPAWIA  211
            ++ +GS YAY G  ++ ++GFL+GW +LLDYLL PTL+ V+G+ A+H +LPQ+P   W  
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  212  FFVVLNTVVNLRGIETTARANRFFLYAQlivlalfvvlatlaIQRGVNGAQWTLRPFYNP  271
            ++V + T VN  GI+ TA+ ++++++ QL +LA+FV+L    +  + +    ++RPF+++
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  272  QAFSPQLIFSALSVAVVSFLGFDAISTLSEEARGGNrvvgratllalvlvaglfvlQTWL  331
            Q F+P LI +A+SVA ++FLGFDAISTLSEE+ GG R V++ATLLALVL + LF++   +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  332  AALLQPQLQRYPSAQASNDAFFEIGRLIAGPWMQIVIALTVAISAAIANSLVAQAATSRL  391
            AA+   +++R++ ++A+N+AFF I+  ++G W+++ +++ VA+  A++N + AQ+A SR+
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRV  304

Query  392  LFAMARDRQLPAFLRYIHPRTGVPQRAILLVAALSMVLGEVFVGQIALLSSLCNVGALTA  451
            LF+M+RDR LPAFL  +H     P+ AIL+ ++++++L+ +F G+I  +S+L N GAL A
Sbjct  305  LFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFA  364

Query  452  F--VLLHVAVLWHFRAHGRKVL--HGLVPVIGIVILAYVLINADLHAQLGGSAWMVVGLA  507
            F  V L V +L +FR  +++ +  H + P++G+++++YV +N ++HA + G +W  +G+A
Sbjct  365  FFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAAIGIA  424

Query  508  VLAFLK  513
            +L + K
Sbjct  425  ILCYRK  430

58) XOO1267 in NC_006834


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  233 bits (870),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 179/433 (42%), Positives = 314/433 (73%), Gaps = 4/433 (0%)

Query  64   RQLTLKDLLIYGLVSMVPTAPFSIFGGVFDISAGMVPLTYLVGFVAMLFTALSYQQMSQA  123
            ++L+L DL++YGLV MVP AP S++G V+++S GMV+L Y++G +AM+FTA SY  +SQ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  124  FPVAGSVYAYVGRGLNSGMGFLAGWAIlldyllvptllyvvGANAMYNVVPAVPQPAWIG  183
            ++ +GS YAY G  +N+++GFL+GW +LLDYLL PTL+ V+G+ A+  ++P +P   W  
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  184  FFVVLNTVVNLRGIETTARANRffllgqlvvlavflvlatlaIQRGVNGAHWSWRPIYDP  243
            ++V + T VN  GI+ TA+ ++++++ QL +LA+F++L    +  + +    S RP++D+
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  244  QAFSPHVIFSALSVAVVSFLGFDAISTLSEEARGGNRVVGRATLLALLIVAGVFVLQTWL  303
            Q F+P +I +A+SVA ++FLGFDAISTLSEE+ GG R V++ATLLAL++ + +F++   +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  304  AALLQPTLQRYPSAQASNDAFFEIGRLIAGPWLQIVIALTVAISAAIANSLVAQAATSRL  363
            AA+    ++R++ ++A+N+AFF I+  ++G WL++ +++ VA+  A++N + AQ+A SR+
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRV  304

Query  364  LFAMARDRQLPAFLRYIHPRTAVPQRAILLVAGLSIVLGEVFVGQIALLSSLCNVGALTA  423
            LF+M+RDR LPAFL  +H     P+ AIL+ +G++++L+ +F G+I  +S+L N GAL A
Sbjct  305  LFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFA  364

Query  424  FVLLHIAV--LWHFRAQG-RRVL-HGLAPLIGIVILAYVLLNADTHAQLGGTAWMVVGLT  479
            F ++++ V  L +FR ++ RR++ H ++P++G+++++YV LN + HA + G +W  +G++
Sbjct  365  FFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAAIGIA  424

Query  480  VLAFLKLSGRSTE  492
            +L + K   ++  
Sbjct  425  ILCYRKAHNQNIA  437

59) KSE_06100 in NC_016109


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  232 bits (864),  Expect = 5e-62, Method: Compositional matrix adjust.
 Identities = 174/427 (41%), Positives = 307/427 (72%), Gaps = 6/427 (1%)

Query  21   RSLTFTDLLVYGLVFMVPIAPFGIFGSVFQGSGGMVALAYVLGMVAMMFTALSYAQMSRA  80
            + L++TDL++YGLVFMVPIAP +++G V++ S GMVAL Y++G +AM FTA SY+ +S+ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  81   FPMAGSVYTYAGRGIGAPVGFLSGWMILLDYVLVPSLLYLIAGVAMNSLVASVPVWLWVV  140
            ++ +GS Y+YAG  I ++VGFL+GW++LLDY+L P+L+ +++GVA++++++ +PVW+W +
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  141  GFVLLNTAVNYLGIETTAKVNKavlvgelvvlalfvvvgvvalaggKGR-GFDFTPLYNG  199
             +V + T+VNYLGI+ TAK +K ++  +L +LA+FV++ V  +  + ++  + F P++++
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  200  HTFSWSLVFGAVSIAVLSFLGFDGISTLSEENRDSAKAIGRSMVAALLLAGTLFIVQTWI  259
            + F+ +L+  A+S+A L+FLGFD+ISTLSEE+ ++++A++++ + AL+LA  LFI+   +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  260  ASLLVADPDALVADGDPDGTAFYDaartaaggwlatltaaatavawgfaNSLVAQAATSR  319
            A++  ++ D + A+G++   AF+  A   +G WL    +   A   + +N + AQ+A SR
Sbjct  245  AAFATGNVDRF-AEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSR  303

Query  320  LLFAMARDRQLPSFLAKVHPTRRVPVNATLLTAGVSLALGLYMTSRADGITLLSSLVNFG  379
            +LF+M+RDR LP+FLA VH TR+ P  A L+T+GV+L L+   +++ ++I   S+LVNFG
Sbjct  304  VLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESI---STLVNFG  360

Query  380  ALSTFlvlhvavvvhylvRKRS-RDYWRHLVAPVLGFAILAYVVVNANIAAQRLGFVWVL  438
            AL +F+V+++ V + +  R ++ R    H+++P++G  +++YV +N NI A  LG+ W  
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  439  VGALVLT  445
            +G  +L 
Sbjct  421  IGIAILC  427

60) MODMU_1810 in NC_017955


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  229 bits (855),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 175/411 (43%), Positives = 296/411 (73%), Gaps = 5/411 (1%)

Query  12   RSLSFTDLLVYGLVFMVPIAPFGIFGSVFQASGGMIALAYAVGGLAMAFTAASYSQMSRA  71
            + LS+TDL++YGLVFMVPIAP +++G V++ S GM+AL Y +G++AM FTA SYS +S+ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  72   FPMAGSVYTYAGRGIAQPVGFLAGWMILLDYVLVPGLLYLIAAVAMNAIVSGIPVWVWLV  131
            ++ +GS Y+YAG  I  +VGFL+GW++LLDY+L P L+ ++++VA++AI++ IPVWVW +
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  132  GFVVLNTVVNYLGIEFTARVNRIMLIGELIVLAVFLLIGVIALARGEGNGLGALTPIYNS  191
             +V + T VNYLGI+ TA+ ++++++ +L +LA+F+L+ V  +  + ++   ++ P+++S
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  192  DTFSLSLVFGAVSIAVLSFLGFDGISTLAEENRDSARSIGKSMIAALALAGTLFIVQTWI  251
            + F+ +L+  A+S+A L+FLGFD+ISTL+EE+ +++R+++K+ + AL LA  LFI+   +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  252  AALLVPNPDTLISEGDAGGTAFYDAAEAASGHWLYVVTAVATAIAWGFANSLVAQAATSR  311
            AA+   N D + +EG+A   AF+  A   +G WL V  ++  A+  + +N + AQ+A SR
Sbjct  245  AAFATGNVDRF-AEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSR  303

Query  312  LLFAMARDRQLPSFLAKVHPTRRVPvnatllvaavslvlGIYMSQRDDGITLLSTLVNFG  371
            +LF+M+RDR LP+FLA VH TR+ P  A L+ ++V+L+L+   S + ++I   STLVNFG
Sbjct  304  VLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESI---STLVNFG  360

Query  372  ALSaflvlhvavvvhfvvRQKSRDW-WRHLAVPVIGFAILFYVVINAKVAA  421
            AL AF+V+++ V + F  R K++ +   H+  P++G  ++ YV +N ++ A
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHA  411

61) Micau_1767 in NC_014391


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  224 bits (836),  Expect = 7e-60, Method: Compositional matrix adjust.
 Identities = 176/439 (41%), Positives = 301/439 (69%), Gaps = 9/439 (2%)

Query  18   RRLRFRDLVAYGLVYMVPIAPMAIFGSVYAGSGGMvalayavgvvalvFTAFSYAQMVKA  77
            ++L + DLV YGLV+MVPIAP++++G VY  S GMVAL Y +G +A+ FTA+SY+ + + 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  78   FPMSGSVYNYAGRGISAPVGFLAGWVILLDYVLVPGLLYLVASVAMHATVPAVPVWLWLL  137
            ++ SGS Y YAG  I+++VGFL+GW++LLDY+L P L+ ++++VA+HA +P +PVW+W L
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  138  GFVAVNTVVNSVGIRMTAMVTRVMLVGELIVLAVFLGVACW--ALASGRGRFSWDAFYDA  195
             +VA+ T VN +GI+ TA   ++++  +L +LA+F+ +  +   L S++  +S  +F+D+
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  196  DTFTWSVVAGAVSIAVLSFLGFDGISMLAEEAKGGSRQIGRAMATVLVLAGVLFIAQTWL  255
            + FT +++A A+S+A L+FLGFD+IS L+EE+ GG+R +++A    LVLA VLFI    +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  256  AAMLVPDPGVLLAQGDPNgtafygaaavagggWLATLCAVATAIAWGLPNSMVAQVATSR  315
            AA    + +  +A+G++   AF+  A+  GG WL    ++  A+  ++ N + AQ A SR
Sbjct  245  AAFATGNVDR-FAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSR  303

Query  316  LLYAMARDRQLPSFLAKVSVRRNVPINATLLTGAVSLALGLYMATRADGITLLSSLINFG  375
            +L++M+RDR LP+FLA V   R+ P  A L+TG+V+L L+   + + ++I   S+L+NFG
Sbjct  304  VLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESI---STLVNFG  360

Query  376  AMVAFlvlhvsvvvhhlIRRRSGNW-WAHLVMPGIGFAILAYVVVNANIAAQRLGLAWLA  434
            A+ AF+V+++ V +   +R ++  +  AH++ P +G  +++YV +N NI A  LG++W A
Sbjct  361  ALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAA  420

Query  435  LGMVVLAGLYLSGRRPSLS  453
            +G+ +L   Y  ++  +++
Sbjct  421  IGIAILC--YRKAHNQNIA  437

62) JDM1_2341 in NC_012984


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  217 bits (809),  Expect = 9e-58, Method: Compositional matrix adjust.
 Identities = 155/380 (41%), Positives = 269/380 (71%), Gaps = 6/380 (1%)

Query  25   RTLSVKDLVIYGLIFMVPIAPMGIYGAVISVSQGMIALTYAIGMLAMFFTALSYGQMSQA  84
            + LS+ DLV+YGL+FMVPIAP+++YG V ++S+GM+AL Y IG +AMFFTA SY+ +SQ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  85   FPVAGSVYAYAKLGINKSIGFLSGWMIILDYIFVPALLYIIAANSLKSLLPTIPTWLWLV  144
            ++ +GS YAYA + IN ++GFL+GW+++LDY++ P+L+ ++++ ++ ++LP IP W+W +
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  145  GFIAINTLINVGGIAFTAIANRIFLIGELIVLAFFIIL-GSYGLMRGIGNGFTLKPFYDA  203
             ++AI T +N  GI  TA  ++++++ +L +LA+F++L     L+ +    ++++PF+D+
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  204  SHFNLNFVMTATSVAVLSFLGFDGISTLAEETTGGNQAVGKGILWSLLIVGALFIIQTYL  263
              F   ++ TA SVA L+FLGFD+ISTL+EE+ GG +AV+K+ L +L++   LFII   +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  264  AALIVPNWHSFND---LNTAFYVVAGKVGGPFLT-DLTTIATILSWGFANALAAQAAISR  319
            AA+   N + F +    N AF+ +AG+VGG  L   ++ I +++  + +N ++AQ+A+SR
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVC-AVGNIITAQTAVSR  303

Query  320  ILFGMARDHNLPHVLARVHPRFKTPYMSTLLVAIISLLVGLTFMNDSGTLSEIVNCGALT  379
            +LF+M+RD+ LP  LA+VH   KTP  + L+ + ++LL++  F     ++S +VN GAL 
Sbjct  304  VLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALF  363

Query  380  AFLVIHIAVINHFFIKQHSH  399
            AF+V+++ V+  F ++  ++
Sbjct  364  AFFVVNLCVFILFNFRMKAQ  383

63) lp_2920 in NC_004567


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  217 bits (809),  Expect = 9e-58, Method: Compositional matrix adjust.
 Identities = 155/380 (41%), Positives = 269/380 (71%), Gaps = 6/380 (1%)

Query  25   RTLSVKDLVIYGLIFMVPIAPMGIYGAVISVSQGMIALTYAIGMLAMFFTALSYGQMSQA  84
            + LS+ DLV+YGL+FMVPIAP+++YG V ++S+GM+AL Y IG +AMFFTA SY+ +SQ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  85   FPVAGSVYAYAKLGINKSIGFLSGWMIILDYIFVPALLYIIAANSLKSLLPTIPTWLWLV  144
            ++ +GS YAYA + IN ++GFL+GW+++LDY++ P+L+ ++++ ++ ++LP IP W+W +
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  145  GFIAINTLINVGGIAFTAIANRIFLIGELIVLAFFIIL-GSYGLMRGIGNGFTLKPFYDA  203
             ++AI T +N  GI  TA  ++++++ +L +LA+F++L     L+ +    ++++PF+D+
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  204  SHFNLNFVMTATSVAVLSFLGFDGISTLAEETTGGNQAVGKGILWSLLIVGALFIIQTYL  263
              F   ++ TA SVA L+FLGFD+ISTL+EE+ GG +AV+K+ L +L++   LFII   +
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  264  AALIVPNWHSFND---LNTAFYVVAGKVGGPFLT-DLTTIATILSWGFANALAAQAAISR  319
            AA+   N + F +    N AF+ +AG+VGG  L   ++ I +++  + +N ++AQ+A+SR
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVC-AVGNIITAQTAVSR  303

Query  320  ILFGMARDHNLPHVLARVHPRFKTPYMSTLLVAIISLLVGLTFMNDSGTLSEIVNCGALT  379
            +LF+M+RD+ LP  LA+VH   KTP  + L+ + ++LL++  F     ++S +VN GAL 
Sbjct  304  VLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALF  363

Query  380  AFLVIHIAVINHFFIKQHSH  399
            AF+V+++ V+  F ++  ++
Sbjct  364  AFFVVNLCVFILFNFRMKAQ  383

64) Thexy_0991 in NC_015555


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  210 bits (781),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 177/414 (43%), Positives = 304/414 (74%), Gaps = 5/414 (1%)

Query  20   RALSVWDLIIYGLIFMVPIAPFGIYGFVADISKGMVALAYLIGIIGMIFTAFSYASMSEA  79
            + LS+ DL++YGL+FMVPIAP ++YG V ++S GMVAL Y+IG I+M+FTA+SY+++S+ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  80   FPIAGSVYSYATNGLNKIIGFFTGWailldyllvpallyvvsaaalssiFPAIPIVAWAL  139
            ++ +GS Y+YA   +N  +GF+TGW +LLDYLL P+L+ V+++ A+ +I+P IP+  W+L
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  140  AFiiintiiniLGIEFTAKFNRivlilelivlalfvvvGIVAISKGIGGAQFSFKAFYDP  199
             ++ I T +N LGI+ TAKF++++++++L +LA+FV++ +  +  + +   +SF++F+D+
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  200  QNFSLSLVMSAVSIAVLSFLGFDGISTLAEETVGGKKTVGRATVlallfagilfilQTWV  259
            Q F+ +L+ +A+S+A L+FLGFD+ISTL+EE+ GG ++V++AT+LAL++A +LFI+    
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  260  ASMIWPDYKSFSD---LNTAFYDVAKRAGGTWLMLTTSLATAFAWGIANSLAAQAAVSRV  316
            A+    +   F++    N AF+ +A   GG WL ++ S+  AF  +++N ++AQ+AVSRV
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRV  304

Query  317  LFSMARDKNLPSFLSKVHPKYKTPYIATISIAVLSAILVIIYSNRIADLTSVINFGALTS  376
            LFSM+RD+ LP+FL+ VH   KTP  A +  + ++ +L  ++S +I  +++++NFGAL +
Sbjct  305  LFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFA  364

Query  377  FLVLHITVIV--HFIKNKSLNIWKHIVSPVLGFLVIFYVWINLNNHAKILGASW  428
            F+V+++ V++  +F  +    I  H++SP++G +VI YV +N+N HA ILG SW
Sbjct  365  FFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISW  418

65) Tsac_2261 in NC_017992


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  206 bits (767),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 183/414 (45%), Positives = 306/414 (74%), Gaps = 5/414 (1%)

Query  20   RALSVWDLIIYGLIFMVPIAPFGIYGFVADISKGMVALAYLIGIIGMIFTAFSYASMSEA  79
            + LS+ DL++YGL+FMVPIAP ++YG V ++S GMVAL Y+IG I+M+FTA+SY+++S+ 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  80   FPIAGSVYSYATNGLNKVIGFFTGWailldyllvpallyvvsaaalssiFPVIPVVVWAl  139
            ++ +GS Y+YA   +N  +GF+TGW +LLDYLL P+L+ V+++ A+ +I+P IPV VW+L
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  140  ifiiintiinilgiEFTAKFNKivlilelivlalfivvGIVAISQGVGGAQFSFKAFYDP  199
            I++ I T +N LGI+ TAKF+K++++++L +LA+F+++ +  +  + +   +SF++F+D+
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  200  QNFSLGLVMSAVSIAVLSFLGFDGISTLAEETVGGKKTVGRATVlallfagalfilQTWV  259
            Q F+ GL+ +A+S+A L+FLGFD+ISTL+EE+ GG ++V++AT+LAL++A  LFI+    
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAF  244

Query  260  ASMIWPDYKSFSD---LNTAFYDVAKRAGGTWLMLTTSLSTAFAWGIANSLAAQAAVSRV  316
            A+    +   F++    N AF+ +A   GG WL ++ S+  AF  +++N ++AQ+AVSRV
Sbjct  245  AAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRV  304

Query  317  LFSMARDKNLPSFLSKVHPKYKTPYIATIFMAVLSAVLVIIYSNKIADLTSVINFGALTS  376
            LFSM+RD+ LP+FL+ VH   KTP  A +F + ++ +L  ++S KI  +++++NFGAL +
Sbjct  305  LFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFA  364

Query  377  FLVLHITVIV--HFIKNKSLNIWKHIVSPVLGFLVIFYVWINLNNHAKILGASW  428
            F+V+++ V++  +F  +    I  H++SP++G +VI YV +N+N HA ILG SW
Sbjct  365  FFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISW  418

66) Aaci_2164 in NC_013205


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  206 bits (767),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 177/424 (42%), Positives = 293/424 (70%), Gaps = 9/424 (2%)

Query  20   RSLRLRDLIVYGMIFMVPIAPMAIYGYVAQQSFGMVPLVYIIGIVAMVFTALSYKQMSAK  79
            + L L DL++YG++FMVPIAP+++YG V + S GMV+LVYIIG +AM FTA SY  +S  
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  80   FPIAGSVYSYVQRGLNPHVGFVAGWMILADYLLAPSLLYAFSAGWLHGLVPSVPtlvwll  139
            ++ +GS Y+Y    +NP VGF++GW++L DYLL P+L+  +++  +H+++P +P  VW L
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  140  ffvlfntvvnvlGITLQARTNFILLAIELVCLLIFLIASVRFVFALGHGAGHLSFNPFYQ  199
            ++V + T VN LGI   A+ + +L+ I+L  L IF++  VR+++ L+ +   LSF PF++
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLML-LDSSQITLSFRPFFD  183

Query  200  PSHFNLKFIENAASIAVLSFLGFDAISTLAEETERPEKTVGNATIASLVIIGLLFVL---  256
            +  F   +I  A S+A L+FLGFDAISTL+EE+E   ++V++AT+ +LV+  +LF++   
Sbjct  184  SQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVA  243

Query  257  -QTYVAALVHPNYADLNPNMAFFQIAKEAGGTFLYILLIIVNAVASGIANALAAQSAISR  315
              ++ ++ V+    +   N AFF IA + GG  L + + I+ A   +++N ++AQ+A+SR
Sbjct  244  FAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSR  303

Query  316  ILYSMGRDNLLPFSKFFSHVSPRFQTPVNATllvavisllvaslvPQ--ETITTLVNFGA  373
            +L+SMGRD +LP   F++HV    +TP  A L+ + ++LL++ L +   E+I+TLVNFGA
Sbjct  304  VLFSMGRDRMLP--AFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGA  361

Query  374  LTAFLMLNATVFVYFSIRQRGFRHVFKYLLFPLCGFVVIGYVWLGFDRTTFIFGLSWMAL  433
            L AF+++N  VF+ F++R ++ R++F  ++ P+ G +VIGYV L  +  ++I+G+SW A+
Sbjct  362  LFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAAI  421

Query  434  GILI  437
            GI I
Sbjct  422  GIAI  425

67) TC41_2287 in NC_017167


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  197 bits (733),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 177/424 (42%), Positives = 294/424 (70%), Gaps = 9/424 (2%)

Query  20   RSLHLRDLIVYGMIFMVPIAPMAIYGYVAQQSFGMVPLVYIIGIVAMVFTALSYKQMSAQ  79
            + L L DL++YG++FMVPIAP+++YG V + S GMV+LVYIIG +AM FTA SY  +S +
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  80   FPIAGSVYSYVQRGLNPHVGFVAGWMILADYLLAPSLLYAFSAGWLHGLVPSVPtfvwll  139
            ++ +GS Y+Y    +NP VGF++GW++L DYLL P+L+  +++  +H+++P +P  VW L
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  140  ffvlfntvvnvlGITLQAKTNFILLAIELVCLLIFLIASVRFVFVLGHGAGHLSFQPFDQ  199
            ++V + T VN LGI   AK + +L+ I+L  L IF++  VR++ +L+ +   LSF+PF +
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLM-LLDSSQITLSFRPFFD  183

Query  200  PGHFNLKFIENAASIAVLSFLGFDAISTLAEETERPEKTVGNATIASLVIIGLLFVV---  256
            +  F   +I  A S+A L+FLGFDAISTL+EE+E   ++V++AT+ +LV+  +LF++   
Sbjct  184  SQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVA  243

Query  257  -QTYMAALVHPNYADLNPNMAFFQIAKEAGGTFlyvvlllvnavaSGIANALAAQSAISR  315
              ++ ++ V+    +   N AFF IA + GG  L V + ++ A   +++N ++AQ+A+SR
Sbjct  244  FAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSR  303

Query  316  ILYSMGRDNLLPFSKFFSRVSPRFQTPVNATllvavisllvaslvPQ--ETITTLVNFGA  373
            +L+SMGRD +LP   F+++V    +TP  A L+ + ++LL++ L +   E+I+TLVNFGA
Sbjct  304  VLFSMGRDRMLP--AFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGA  361

Query  374  LTAFLMLNATVFVYFSIRQRGFRHVFRYLLFPLCGFVVIGYVWLGFDRTTFIFGLSWMAL  433
            L AF+++N  VF+ F++R ++ R++F  ++ P+ G +VIGYV L  +  ++I+G+SW A+
Sbjct  362  LFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALILGISWAAI  421

Query  434  GILI  437
            GI I
Sbjct  422  GIAI  425

68) L083_4715 in NC_021191


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  187 bits (695),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 147/365 (41%), Positives = 258/365 (71%), Gaps = 5/365 (1%)

Query  62   RLLGFADLLIYGLIFMVPIAPFGIFGSVFAGSGGMVALAYAVGMVAMMFTALSYAQMVRA  121
            + L+++DL++YGL+FMVPIAP +++G V+  S GMVAL Y +G +AM FTA SY+ + + 
Sbjct  5    KKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQH  64

Query  122  FPMAGSVYSYAGRGIAPPVGFLAGWVILLDYVLVPGLLYLVASVAMHSLVPAVPVWLWLT  181
            ++ +GS Y+YAG  I P+VGFL+GW++LLDY+L P L+ ++++VA+H+++P +PVW+W  
Sbjct  65   ISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPL  124

Query  182  GFVVLNTAVNYLGIETTARVNRVMLVAELVVLAIFLVVGIGALARGKGD-GFELRPFFDP  240
             +V + T+VNYLGI+ TA+ +++++  +L +LAIF+++ +  +  + ++  + +RPFFD+
Sbjct  125  IYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDSSQITLSFRPFFDS  184

Query  241  DTFSWPvvlgavsvavlsFLGFDGISMLAEESREDTRRIGRTMVAALLLAGVLFIVQTWV  300
            + F+  ++  A+SVA L+FLGFD+IS L+EES  + R ++++ + AL+LA VLFI+    
Sbjct  185  QWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVV-A  243

Query  301  AALLVPDPAGLLADGDPEGTAFYDaartagggwlagltalataiawgFANSLVAQAATSR  360
             A +  +  + +A+G++   AF+  A   GG WL    ++  A+  + +N + AQ+A SR
Sbjct  244  FAAFATGNVDRFAEGNATNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSR  303

Query  361  LLYAMARDGQMPRFLARINPRHRVPanatllvaavslalglamaaRDDGISLLSTLVNFG  420
            +L++M+RD  +P FLA+++  ++ P  A L+ ++V+L L+   +++ ++I   STLVNFG
Sbjct  304  VLFSMGRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESI---STLVNFG  360

Query  421  AMTAF  425
            A+ AF
Sbjct  361  ALFAF  365

69) Krad_0553 in NC_009664


> NC_006905_P3|2|G2|62179970|YP_216387.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|1815..3158|ycjj|SC1400|amino 
acid permease
Length=447

 Score =  146 bits (538),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 164/405 (41%), Positives = 286/405 (71%), Gaps = 6/405 (1%)

Query  25   DLLVYGLVFMVPIAPWAIFGTVYDSAGGMVPLVYLIGLVAMLFTALAYGQMAKAFPLAGS  84
            DL++YGLVFMVPIAP +++G VY+ + GMV+LVY+IG +AM+FTA +Y+ +++ ++ +GS
Sbjct  11   DLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAYSYSTLSQHISSSGS  70

Query  85   VFSYVGRGVHPALGFLAGWVMlldylliptllYVFAAESMVGIFPGSPRWVWALVFVAVN  144
             ++Y G  ++PA+GFL+GW++LLDYLL+PTL+ V+++ ++ +I+P  P WVW+L++VA+ 
Sbjct  71   AYAYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPVWVWPLIYVAIG  130

Query  145  TVVNLLGISSLKLANRvflaveivfvaafvviaatalNGGTIPGAEWGATPFWDSSQVSG  204
            T VN LGI      +++++ +++ ++A FV++    +  ++ +    +  PF DS   + 
Sbjct  131  TGVNYLGIQQTAKFDKLLVFIQLGILAIFVLLIVRLMLLDS-SQITLSFRPFFDSQWFTP  189

Query  205  PliaaalsiavlsflGFDGISTLAEETTGRRNPAGRAMLIALFVVASLFVVQTWLASLLA  264
             LIA+A+S+A L+FLGFD+ISTL+EE+ G   + ++A L+AL + + LF++   +A++ +
Sbjct  190  GLIATAISVAALNFLGFDAISTLSEESEGGGRAVSKATLLALVLATVLFIIVVAFAAFAT  249

Query  265  AGRDSFGEA-AAGNAFFDLVEAASSPGW-KTaflvvnvvavgianamaaqaaTSRLLFSM  322
            +  D F+E+ A+ +AFF  + +  +  W K AF ++     +++N ++AQ+A SR+LFSM
Sbjct  250  GNVDRFAEGNATNEAFFT-IAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTAVSRVLFSM  308

Query  323  SRDRQLPAFLSRI-SGRQVPvaailvvtaltlvlvlffvGQIALISSLVNFGALFGFCll  381
            +RDR LPAFL+++ + R+ P  AIL   ++TL+L  +F G+I  IS+LVNFGALF+F ++
Sbjct  309  GRDRMLPAFLAHVHTTRKTPDYAILFTGGVTLLLSYLFSGKIESISTLVNFGALFAFFVV  368

Query  382  hvsvvvhhlvRGRS-RNLLLHLVCPVLGFLIIGYVLLNAGAPAQI  425
            ++ V +    R ++ R ++ H++ P++G ++IGYV LN    A I
Sbjct  369  NLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIHALI  413