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Homologs of STY4821 gene of NC_003198_P10

451

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) STY4821
( NP_458899.1 )

integrase

NC_003198
(Salmonella enterica CT18)

0.0

100

2) t4518
( NP_808103.1 )

integrase

NC_004631
(Salmonella enterica Ty2)

0.0

100

3) TY21A_22985
( YP_007928753.1 )

integrase

NC_021176
(Salmonella enterica Ty21a)

0.0

100

4) ENC_43890
( YP_007847599.1 )

Integrase

NC_021046
(Enterobacter cloacae NCTC 9394)

0.0

5) SEEB0189_19950
( YP_008310270.1 )

integrase

NC_021844
(Salmonella enterica CFSAN000189)

0.0

6) ETAE_3092
( YP_003297134.1 )

integrase

NC_013508
(Edwardsiella tarda EIB202)

0.0

7) ECO26_5435
( YP_003232308.1 )

integrase

NC_013361
(Escherichia coli 11368)

0.0

8) KPHS_05400
( YP_005224840.1 )

putative P4-type integrase

NC_016845
(Klebsiella pneumoniae HS11286)

0.0

9) N559_4601
( YP_008427480.1 )

P4-type integrase

NC_022082
(Klebsiella pneumoniae JM45)

0.0

10) SSPA3984
( YP_002144818.1 )

integrase

NC_011147
(Salmonella enterica AKU12601)

0.0

11) int
( YP_153333.1 )

integrase

NC_006511
(Salmonella enterica ATCC 9150)

0.0

12) SNSL254_A4836
( YP_002043726.1 )

integrase

NC_011080
(Salmonella enterica SL254)

0.0

13) SN31241_8570
( YP_008358775.1 )

Integrase

NC_021902
(Salmonella enterica USMARC-S3124.1)

0.0

14) ECOK1_4788
( YP_006103840.1 )

site-specific recombinase, phage integrase family

NC_017628
(Escherichia coli IHE3034)

0.0

15) intA_4
( YP_008574436.1 )

Prophage CP4-57 integrase

NC_022370
(Escherichia coli PMV-1)

0.0

16) SBO_4174
( YP_410429.1 )

P4-type integrase

NC_007613
(Shigella boydii Sb227)

0.0

17) EbC_39600
( YP_003743338.1 )

integrase

NC_014306
(Erwinia billingiae Eb661)

3e-164

18) Dda3937_01301
( YP_003881181.1 )

Integrase

NC_014500
(Dickeya dadantii 3937)

7e-164

19) Dd703_3554
( YP_002989134.1 )

integrase family protein

NC_012880
(Dickeya dadantii Ech703)

2e-162

20) PCC21_004050
( YP_006645061.1 )

integrase

NC_018525
(Pectobacterium carotovorum PCC21)

2e-161

21) Dd1591_3717
( YP_003005999.1 )

integrase family protein

NC_012912
(Dickeya zeae Ech1591)

5e-161

22) PAU_03981
( YP_003042810.1 )

p4 integrase-like protein

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

3e-152

23) intB
( YP_003714347.1 )

integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

2e-150

24) intB
( YP_003713602.1 )

integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

2e-150

25) intB
( YP_003469249.1 )

KpLE2 phage-like element; P4-like integrase

NC_013892
(Xenorhabdus bovienii SS-2004)

8e-149

26) intB
( YP_003712791.1 )

KpLE2 phage-like element; P4-like integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

2e-148

27) intB
( YP_003468561.1 )

prophage like-integrase

NC_013892
(Xenorhabdus bovienii SS-2004)

4e-146

28) SeAg_B4773
( YP_002149406.2 )

integrase

NC_011149
(Salmonella enterica SL483)

3e-142

29) SG1638
( YP_455318.1 )

phage integrase

NC_007712
(Sodalis glossinidius morsitans)

2e-137

30) plu4460
( NP_931626.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

4e-136

31) Ser39006_0951
( YP_008521333.1 )

protein of unknown function DUF4102

NC_022268
(Serratia sp. ATCC 39006)

2e-123

32) D782_3965
( YP_007342049.1 )

Integrase

NC_020063
(Enterobacteriaceae bacterium FGI 57)

7e-121

33) i14_4873a
( YP_006156926.1 )

prophage P4 integrase

NC_017652
(Escherichia coli clone D i14)

3e-120

34) i02_4873a
( YP_006152007.1 )

prophage P4 integrase

NC_017651
(Escherichia coli clone D i2)

3e-120

35) EcSMS35_4753
( YP_001746674.1 )

phage integrase family site specific recombinase

NC_010498
(Escherichia coli SMS-3-5)

4e-120

36) APECO78_02320
( YP_007379647.1 )

phage integrase family site specific recombinase

NC_020163
(Escherichia coli APEC O78)

1e-119

37) CE10_5017
( YP_006146968.1 )

phage integrase family site specific recombinase

NC_017646
(Escherichia coli CE10)

1e-119

38) ECP_4521
( YP_672358.1 )

prophage P4 integrase

NC_008253
(Escherichia coli 536)

2e-119

39) ECABU_c48360
( YP_006108746.1 )

prophage P4 integrase

NC_017631
(Escherichia coli ABU 83972)

2e-119

40) UM146_21610
( YP_006113162.1 )

prophage P4 integrase

NC_017632
(Escherichia coli UM146)

2e-119

41) intB
( YP_543812.1 )

prophage P4 integrase

NC_007946
(Escherichia coli UTI89)

3e-119

42) H650_18245
( YP_008109403.1 )

integrase

NC_021500
(Enterobacter sp. R4-368)

3e-119

43) EKO11_4021
( YP_005279654.1 )

integrase family protein

NC_016902
(Escherichia coli KO11FL)

5e-119

44) KO11_23100
( YP_006166928.1 )

site-specific recombinase, phage integrase family protein

NC_017660
(Escherichia coli KO11FL)

5e-119

45) LY180_22530
( YP_008567507.1 )

integrase

NC_022364
(Escherichia coli LY180)

5e-119

46) ECW_m4652
( YP_006127166.1 )

putative P4-type integrase

NC_017635
(Escherichia coli W)

5e-119

47) WFL_22655
( YP_006175953.1 )

site-specific recombinase, phage integrase family protein

NC_017664
(Escherichia coli W)

5e-119

48) CFSAN001992_11535
( YP_007472047.1 )

phage integrase family site-specific recombinase

NC_020307
(Salmonella enterica CFSAN001992)

7e-119

49) EC042_4741
( YP_006098991.1 )

integrase

NC_017626
(Escherichia coli 042)

9e-119

50) ECA2879
( YP_050970.1 )

integrase

NC_004547
(Pectobacterium atrosepticum SCRI1043)

1e-118

51) Entcl_3878
( YP_003943402.1 )

integrase family protein

NC_014618
(Enterobacter cloacae SCF1)

5e-118

52) CFSAN002050_22445
( YP_008262355.1 )

integrase

NC_021818
(Salmonella enterica CFSAN002050)

5e-118

53) S70_06120
( YP_006215787.1 )

Prophage integrase

NC_017731
(Providencia stuartii MRSN 2154)

6e-118

54) EKO11_4043
( YP_005279675.1 )

integrase family protein

NC_016902
(Escherichia coli KO11FL)

7e-118

55) KO11_22995
( YP_006166907.1 )

hypothetical protein

NC_017660
(Escherichia coli KO11FL)

7e-118

56) LY180_22420
( YP_008567485.1 )

integrase

NC_022364
(Escherichia coli LY180)

7e-118

57) WFL_22550
( YP_006175932.1 )

hypothetical protein

NC_017664
(Escherichia coli W)

7e-118

58) S70_13465
( YP_006217222.1 )

Prophage integrase

NC_017731
(Providencia stuartii MRSN 2154)

7e-118

59) SARI_03312
( YP_001572286.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

8e-118

60) A225_0566
( YP_006496338.1 )

integrase

NC_018106
(Klebsiella oxytoca E718)

1e-117

61) ECABU_c32560
( YP_006107255.1 )

site-specific recombinase

NC_017631
(Escherichia coli ABU 83972)

2e-117

62) int
( YP_859807.1 )

Int ( P4-type integrase)

NC_008563
(Escherichia coli APEC O1)

2e-117

63) CE10_3417
( YP_006145430.1 )

integrase

NC_017646
(Escherichia coli CE10)

2e-117

64) i14_3273
( YP_006155358.1 )

prophage P4 integrase

NC_017652
(Escherichia coli clone D i14)

2e-117

65) i02_3273
( YP_006150439.1 )

prophage P4 integrase

NC_017651
(Escherichia coli clone D i2)

2e-117

66) int
( YP_006141472.1 )

Integrase

NC_017644
(Escherichia coli NA114)

2e-117

67) ECS88_4720
( YP_002394207.1 )

integrase

NC_011742
(Escherichia coli S88)

2e-117

68) SbBS512_E4814
( YP_001882951.1 )

site-specific recombinase, phage integrase family protein

NC_010658
(Shigella boydii CDC 3083-94)

4e-117

69) ETAC_14745
( YP_007630430.1 )

Prophage integrase

NC_020796
(Edwardsiella tarda C07-087)

6e-117

70) EcolC_0747
( YP_001723746.1 )

integrase family protein

NC_010468
(Escherichia coli ATCC 8739)

7e-117

71) EcolC_3878
( YP_001726809.1 )

integrase family protein

NC_010468
(Escherichia coli ATCC 8739)

1e-116

72) ECED1_3430
( YP_002399303.1 )

integrase

NC_011745
(Escherichia coli ED1a)

1e-116

73) ECUMN_3322
( YP_002414004.1 )

integrase

NC_011751
(Escherichia coli UMN026)

2e-116

74) intB
( YP_004950346.1 )

prophage P4 integrase

NC_016514
(Enterobacter cloacae EcWSU1)

2e-116

75) ROD_50201
( YP_003368377.1 )

integrase

NC_013716
(Citrobacter rodentium ICC168)

2e-116

76) ECO26_4069
( YP_003230994.1 )

integrase

NC_013361
(Escherichia coli 11368)

2e-116

77) c3556
( NP_755431.1 )

prophage P4 integrase

NC_004431
(Escherichia coli CFT073)

2e-116

78) c5216
( NP_757064.1 )

prophage P4 integrase

NC_004431
(Escherichia coli CFT073)

2e-116

79) EC042_4610
( YP_006098876.1 )

integrase

NC_017626
(Escherichia coli 042)

3e-116

80) O3M_04655
( YP_006768605.1 )

Prophage integrase

NC_018650
(Escherichia coli 2009EL-2050)

3e-116

81) O3O_21040
( YP_006782711.1 )

Prophage integrase

NC_018661
(Escherichia coli 2009EL-2071)

3e-116

82) O3K_04610
( YP_006777642.1 )

Prophage integrase

NC_018658
(Escherichia coli 2011C-3493)

3e-116

83) int
( YP_002404232.1 )

Prophage integrase

NC_011748
(Escherichia coli 55989)

3e-116

84) int
( YP_002409310.1 )

Prophage integrase

NC_011750
(Escherichia coli IAI39)

3e-116

85) UMNK88_3667
( YP_006135366.1 )

phage integrase

NC_017641
(Escherichia coli UMNK88)

3e-116

86) EcE24377A_3314
( YP_001464322.1 )

site-specific recombinase, phage integrase

NC_009801
(Escherichia coli E24377A)

3e-116

87) PAGR_g3659
( YP_005994368.1 )

integrase

NC_017554
(Pantoea ananatis PA13)

4e-116

88) int
( YP_002400684.1 )

Prophage integrase

NC_011745
(Escherichia coli ED1a)

4e-116

89) CFSAN002050_05850
( YP_008259116.1 )

integrase

NC_021818
(Salmonella enterica CFSAN002050)

5e-116

90) APECO1_3534
( YP_854214.1 )

P4-like integrase

NC_008563
(Escherichia coli APEC O1)

5e-116

91) CE10_4872
( YP_006146828.1 )

Prophage integrase

NC_017646
(Escherichia coli CE10)

5e-116

92) int
( YP_002392871.1 )

Prophage integrase

NC_011742
(Escherichia coli S88)

5e-116

93) EAM_3037
( YP_003540101.1 )

integrase

NC_013971
(Erwinia amylovora ATCC 49946)

6e-116

94) intB
( YP_003529741.1 )

integrase

NC_013961
(Erwinia amylovora CFBP1430)

6e-116

95) ECO55CA74_24440
( YP_006161977.1 )

Prophage integrase

NC_017656
(Escherichia coli RM12579)

6e-116

96) EC042_3174
( YP_006097466.1 )

integrase

NC_017626
(Escherichia coli 042)

6e-116

97) Dd586_0394
( YP_003331995.1 )

integrase family protein

NC_013592
(Dickeya dadantii Ech586)

1e-115

98) YpsIP31758_0809
( YP_001399793.1 )

phage integrase family site specific recombinase

NC_009708
(Yersinia pseudotuberculosis IP 31758)

1e-115

99) ECO111_5079
( YP_003237359.1 )

putative integrase

NC_013364
(Escherichia coli 11128)

7e-116

100) ECO26_5300
( YP_003232178.1 )

integrase

NC_013361
(Escherichia coli 11368)

7e-116

101) ECO103_3550
( YP_003223418.1 )

integrase

NC_013353
(Escherichia coli 12009)

7e-116

102) ECO103_4929
( YP_003224745.1 )

integrase

NC_013353
(Escherichia coli 12009)

7e-116

103) ECP_2962
( YP_670846.1 )

P4-type integrase

NC_008253
(Escherichia coli 536)

7e-116

104) E2348C_3220
( YP_002330696.1 )

integrase

NC_011601
(Escherichia coli E2348/69)

7e-116

105) ETAF_2789
( YP_005700383.1 )

Integrase

NC_017309
(Edwardsiella tarda FL6-60)

2e-115

106) ECENHK_02620
( YP_006577041.1 )

phage integrase family site-specific recombinase

NC_018405
(Enterobacter cloacae ENHKU01)

2e-115

107) Ser39006_3432
( YP_008523814.1 )

integrase family protein

NC_022268
(Serratia sp. ATCC 39006)

2e-115

108) intB
( YP_003501106.1 )

Site-specific recombinase, phage integrase family protein

NC_013941
(Escherichia coli CB9615)

4e-115

109) ECH74115_4272
( YP_002272448.1 )

site-specific recombinase, phage integrase family protein

NC_011353
(Escherichia coli EC4115)

4e-115

110) Z4313
( NP_289539.1 )

pathogenicity island integrase

NC_002655
(Escherichia coli EDL933)

4e-115

111) ECO55CA74_17295
( YP_006160577.1 )

Site-specific recombinase, phage integrase family protein

NC_017656
(Escherichia coli RM12579)

4e-115

112) ECs3843
( NP_311870.1 )

integrase

NC_002695
(Escherichia coli Sakai)

4e-115

113) ECSP_3940
( YP_003079757.1 )

pathogenicity island integrase

NC_013008
(Escherichia coli TW14359)

4e-115

114) CDCO157_3594
( YP_006314460.1 )

integrase

NC_017906
(Escherichia coli Xuzhou21)

4e-115

115) Ent638_0463
( YP_001175202.1 )

phage integrase family protein

NC_009436
(Enterobacter sp. 638)

5e-115

116) EBL_c34780
( YP_006321045.1 )

prophage P4 integrase

NC_017910
(Escherichia blattae DSM 4481)

5e-115

117) YPK_3676
( YP_001722396.1 )

integrase family protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

6e-115

118) H650_18115
( YP_008109377.1 )

integrase

NC_021500
(Enterobacter sp. R4-368)

6e-115

119) int
( YP_002410463.1 )

Prophage integrase

NC_011750
(Escherichia coli IAI39)

6e-115

120) A1122_08715
( YP_005521414.1 )

integrase

NC_017168
(Yersinia pestis A1122)

1e-114

121) YpAngola_A4051
( YP_001608341.1 )

phage integrase family site specific recombinase

NC_010159
(Yersinia pestis Angola)

1e-114

122) YPA_2939
( YP_652846.1 )

integrase

NC_008150
(Yersinia pestis Antiqua)

1e-114

123) intB
( YP_002348329.1 )

integrase

NC_003143
(Yersinia pestis CO92)

1e-114

124) intB
( YP_005506227.1 )

integrase

NC_017154
(Yersinia pestis D106004)

1e-114

125) intB
( YP_005510085.1 )

integrase

NC_017160
(Yersinia pestis D182038)

1e-114

126) YPN_0651
( YP_646583.1 )

integrase

NC_008149
(Yersinia pestis Nepal516)

1e-114

127) intB
( YP_003569204.1 )

integrase

NC_014029
(Yersinia pestis Z176003)

1e-114

128) intB
( NP_992037.1 )

integrase

NC_005810
(Yersinia pestis 91001)

2e-114

129) intB
( NP_668085.1 )

integrase

NC_004088
(Yersinia pestis KIM)

2e-114

130) EAE_09085
( YP_004592016.1 )

prothage integrase

NC_015663
(Enterobacter aerogenes KCTC 2190)

2e-114

131) ECO103_5061
( YP_003224874.1 )

integrase

NC_013353
(Escherichia coli 12009)

3e-114

132) ECO111_3718
( YP_003236059.1 )

putative integrase

NC_013364
(Escherichia coli 11128)

3e-114

133) int
( YP_002389727.1 )

Prophage integrase

NC_011741
(Escherichia coli IAI1)

5e-114

134) YPDSF_3248
( YP_001164578.1 )

integrase

NC_009381
(Yersinia pestis Pestoides F)

6e-114

135) KPN2242_01530
( YP_005952795.1 )

site-specific recombinase, phage integrase family protein

NC_017540
(Klebsiella pneumoniae KCTC 2242)

1e-113

136) W5S_1543
( YP_006282507.1 )

Prophage P4 integrase

NC_017845
(Pectobacterium sp. SCC3193)

8e-114

137) Pecwa_1669
( YP_003259066.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

9e-114

138) intB
( YP_005625501.1 )

integrase

NC_017265
(Yersinia pestis Harbin 35)

2e-113

139) A464_4477
( YP_008325069.1 )

Integrase

NC_021870
(Salmonella bongori N268-08)

8e-113

140) CKO_03532
( YP_001455048.1 )

hypothetical protein

NC_009792
(Citrobacter koseri ATCC BAA-895)

7e-113

141) intB
( YP_002405686.1 )

integrase; KpLE2 phage-like element

NC_011748
(Escherichia coli 55989)

8e-113

142) KOX_09480
( YP_005017861.1 )

phage integrase family protein

NC_016612
(Klebsiella oxytoca KCTC 1686)

2e-112

143) SPC_4619
( YP_002640109.1 )

integrase

NC_012125
(Salmonella enterica RKS4594)

2e-112

144) EcDH1_3727
( YP_006093621.1 )

integrase family protein

NC_017625
(Escherichia coli DH1)

3e-112

145) intB
( YP_006131525.1 )

site-specific recombinase

NC_017638
(Escherichia coli DH1)

3e-112

146) intB
( YP_002400869.1 )

putative integrase; KpLE2 phage-like element

NC_011745
(Escherichia coli ED1a)

3e-112

147) intB
( YP_001733029.1 )

KpLE2 phage-like element; integrase

NC_010473
(Escherichia coli K-12)

3e-112

148) intB
( YP_492408.1 )

integrase

NC_007779
(Escherichia coli K-12)

3e-112

149) intB
( YP_002415396.1 )

putative integrase; KpLE2 phage-like element

NC_011751
(Escherichia coli UMN026)

3e-112

150) ETEC_4611
( YP_006118149.1 )

putative phage integrase

NC_017633
(Escherichia coli ETEC H10407)

4e-112

151) intB
( YP_002410602.1 )

putative integrase; KpLE2 phage-like element

NC_011750
(Escherichia coli IAI39)

4e-112

152) intB
( YP_003001820.1 )

intB

NC_012892
(Escherichia coli BL21(DE3))

4e-112

153) intB
( YP_003056695.1 )

integrase

NC_012971
(Escherichia coli BL21(DE3))

4e-112

154) ECBD_3766
( YP_003037938.1 )

integrase

NC_012947
(Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG)

4e-112

155) intB
( YP_006171360.1 )

Prophage P4 integrase (Int(P4))

NC_017663
(Escherichia coli P12b)

4e-112

156) intB
( YP_003047305.1 )

putative integrase

NC_012967
(Escherichia coli REL606)

4e-112

157) Dda3937_03406
( YP_003881783.1 )

Integrase

NC_014500
(Dickeya dadantii 3937)

1e-111

158) SARI_03082
( YP_001572064.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

1e-111

159) Rahaq_1192
( YP_004211942.1 )

integrase family protein

NC_015061
(Rahnella sp. Y9602)

1e-111

160) plu4477
( NP_931643.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

2e-111

161) YpsIP31758_3540
( YP_001402494.1 )

phage integrase family site specific recombinase

NC_009708
(Yersinia pseudotuberculosis IP 31758)

2e-111

162) Dd586_0881
( YP_003332472.1 )

integrase family protein

NC_013592
(Dickeya dadantii Ech586)

2e-111

163) intB
( YP_410419.1 )

prophage P4 integrase

NC_007613
(Shigella boydii Sb227)

6e-111

164) O3M_22875
( YP_006772189.1 )

Prophage integrase

NC_018650
(Escherichia coli 2009EL-2050)

6e-111

165) O3K_22970
( YP_006781250.1 )

Prophage integrase

NC_018658
(Escherichia coli 2011C-3493)

6e-111

166) int
( YP_002405550.1 )

Prophage integrase

NC_011748
(Escherichia coli 55989)

6e-111

167) SFxv_3245
( YP_005728584.1 )

Site-specific recombinase, phage integrase family protein

NC_017328
(Shigella flexneri 2002017)

6e-111

168) S4822
( NP_838459.1 )

P4-type integrase

NC_004741
(Shigella flexneri 2457T)

6e-111

169) SF2964
( NP_708738.1 )

P4-type integrase

NC_004337
(Shigella flexneri 301)

6e-111

170) intB
( YP_002153152.1 )

prophage integrase

NC_010554
(Proteus mirabilis HI4320)

3e-110

171) PC1_0871
( YP_003016457.1 )

integrase family protein

NC_012917
(Pectobacterium carotovorum PC1)

3e-110

172) MU9_135
( YP_007503554.1 )

prophage integrase

NC_020418
(Morganella morganii KT)

6e-110

173) Dd1591_3702
( YP_003005986.1 )

integrase family protein

NC_012912
(Dickeya zeae Ech1591)

1e-109

174) A79E_4509
( YP_006638268.1 )

integrase

NC_018522
(Klebsiella pneumoniae 1084)

1e-109

175) int
( YP_002917504.1 )

integrase

NC_012731
(Klebsiella pneumoniae NTUH-K2044)

1e-109

176) ETEC_3157
( YP_006116702.1 )

phage integrase

NC_017633
(Escherichia coli ETEC H10407)

6e-110

177) intB
( YP_005802313.1 )

protein intB

NC_017390
(Erwinia pyrifoliae DSM 12163)

7e-110

178) EpC_14570
( YP_002648472.1 )

phage integrase family protein

NC_012214
(Erwinia pyrifoliae Ep1/96)

7e-110

179) Ent638_2887
( YP_001177603.1 )

phage integrase family protein

NC_009436
(Enterobacter sp. 638)

7e-110

180) KPK_4978
( YP_002240755.1 )

phage integrase family site-specific recombinase

NC_011283
(Klebsiella pneumoniae 342)

9e-110

181) SFV_4227
( YP_691515.1 )

P4-type integrase

NC_008258
(Shigella flexneri 8401)

2e-109

182) Pecwa_0718
( YP_003258145.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

2e-109

183) ETEC_4481
( YP_006118020.1 )

KpLE2 phage-like element; predicted integrase

NC_017633
(Escherichia coli ETEC H10407)

3e-109

184) SFxv_4606
( YP_005729812.1 )

putative P4-type integrase

NC_017328
(Shigella flexneri 2002017)

9e-109

185) S4839
( NP_839619.1 )

P4-type integrase

NC_004741
(Shigella flexneri 2457T)

9e-109

186) SF4224
( NP_709936.2 )

P4-type integrase

NC_004337
(Shigella flexneri 301)

9e-109

187) Dd703_3541
( YP_002989121.1 )

integrase family protein

NC_012880
(Dickeya dadantii Ech703)

2e-108

188) MU9_117
( YP_007503536.1 )

prophage integrase

NC_020418
(Morganella morganii KT)

9e-108

189) Y11_15011
( YP_006005000.1 )

integrase

NC_017564
(Yersinia enterocolitica Y11)

2e-107

190) Pecwa_0447
( YP_003257894.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

3e-106

191) Dd586_2635
( YP_003334184.1 )

integrase family protein

NC_013592
(Dickeya dadantii Ech586)

8e-106

192) W5S_0459
( YP_006281457.1 )

P4-like integrase

NC_017845
(Pectobacterium sp. SCC3193)

2e-105

193) Dd703_3034
( YP_002988630.1 )

integrase family protein

NC_012880
(Dickeya dadantii Ech703)

3e-104

194) int
( NP_458759.1 )

bacteriophage integrase

NC_003198
(Salmonella enterica CT18)

5e-104

195) STBHUCCB_46270
( YP_005220043.1 )

Bacteriophage integrase

NC_016832
(Salmonella enterica P-stx-12)

5e-104

196) int
( NP_807963.1 )

bacteriophage integrase

NC_004631
(Salmonella enterica Ty2)

5e-104

197) TY21A_22260
( YP_007928610.1 )

bacteriophage integrase

NC_021176
(Salmonella enterica Ty21a)

1e-103

198) Dda3937_00080
( YP_003883684.1 )

Integrase

NC_014500
(Dickeya dadantii 3937)

3e-103

199) PC1_0858
( YP_003016445.1 )

integrase family protein

NC_012917
(Pectobacterium carotovorum PC1)

1e-102

200) Pecwa_3419
( YP_003260764.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

3e-102

201) Dd586_1478
( YP_003333051.1 )

integrase family protein

NC_013592
(Dickeya dadantii Ech586)

7e-102

202) M621_16100
( YP_008160007.1 )

integrase

NC_021659
(Serratia plymuthica S13)

6e-101

203) STBHUCCB_9400
( YP_005216516.1 )

CP4-like integrase

NC_016832
(Salmonella enterica P-stx-12)

1e-100

204) t05065
( YP_006892430.1 )

hypothetical protein

NC_004631
(Salmonella enterica Ty2)

1e-100

205) TY21A_04490
( YP_007925220.1 )

Prophage integrase

NC_021176
(Salmonella enterica Ty21a)

1e-100

206) KOX_24355
( YP_005020825.1 )

integrase family protein

NC_016612
(Klebsiella oxytoca KCTC 1686)

9e-101

207) Dd1591_1514
( YP_003003849.1 )

integrase family protein

NC_012912
(Dickeya zeae Ech1591)

2e-100

208) W5S_1636
( YP_006282600.1 )

P4-like integrase

NC_017845
(Pectobacterium sp. SCC3193)

2e-100

209) int
( YP_004730693.1 )

bacteriophage integrase

NC_015761
(Salmonella bongori NCTC 12419)

2e-100

210) CFSAN002050_16945
( YP_008261284.1 )

integrase

NC_021818
(Salmonella enterica CFSAN002050)

2e-100

211) int
( YP_002398227.1 )

Prophage integrase

NC_011745
(Escherichia coli ED1a)

2e-100

212) Pecwa_1693
( YP_003259087.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

6e-100

213) CKO_00953
( YP_001452539.1 )

hypothetical protein

NC_009792
(Citrobacter koseri ATCC BAA-895)

6e-100

214) A79E_1743
( YP_006635553.1 )

integrase

NC_018522
(Klebsiella pneumoniae 1084)

6e-100

215) KPR_3398
( YP_007992374.1 )

hypothetical protein

NC_021232
(Klebsiella pneumoniae SB3432)

6e-100

216) Rahaq2_2006
( YP_005200009.1 )

Integrase

NC_016818
(Rahnella aquatilis CIP 78.65)

7e-100

217) ST548_p7750
( YP_007386848.1 )

Integrase

NC_020181
(Enterobacter aerogenes EA1509E)

7e-100

218) A79E_1796
( YP_006635603.1 )

integrase

NC_018522
(Klebsiella pneumoniae 1084)

1e-99

219) int
( YP_002398182.1 )

integrase

NC_011745
(Escherichia coli ED1a)

2e-99

220) W5S_0472
( YP_006281470.1 )

P4-like integrase

NC_017845
(Pectobacterium sp. SCC3193)

6e-99

221) SPAB_01138
( YP_001587388.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

6e-99

222) A79E_1748
( YP_006635556.1 )

integrase

NC_018522
(Klebsiella pneumoniae 1084)

6e-99

223) int
( YP_001338304.1 )

putative phage integrase

NC_009648
(Klebsiella pneumoniae subsp. pneumoniae MGH 78578)

8e-99

224) intB
( YP_050980.1 )

integrase

NC_004547
(Pectobacterium atrosepticum SCRI1043)

2e-98

225) intB
( YP_049780.1 )

phage integrase

NC_004547
(Pectobacterium atrosepticum SCRI1043)

3e-98

226) Pecwa_1586
( YP_003258984.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

3e-98

227) Pecwa_1766
( YP_003259159.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

6e-98

228) Dda3937_02713
( YP_003881328.1 )

Integrase

NC_014500
(Dickeya dadantii 3937)

2e-97

229) Dd703_2459
( YP_002988063.1 )

integrase family protein

NC_012880
(Dickeya dadantii Ech703)

2e-97

230) ECO111_2624
( YP_003235033.1 )

putative integrase

NC_013364
(Escherichia coli 11128)

2e-97

231) W5S_1599
( YP_006282563.1 )

Prophage P4 integrase

NC_017845
(Pectobacterium sp. SCC3193)

3e-97

232) SG1996
( YP_002226930.1 )

phage integrase

NC_011274
(Salmonella enterica 287/91)

3e-97

233) SPUCDC_0925
( YP_008480613.1 )

phage integrase

NC_022221
(Salmonella enterica CDC1983-67)

5e-97

234) SEN1970
( YP_002244067.1 )

phage integrase

NC_011294
(Salmonella enterica P125109)

5e-97

235) SPUL_0925
( YP_005212155.1 )

phage integrase

NC_016831
(Salmonella enterica RKS5078)

5e-97

236) int
( YP_002381990.1 )

phage integrase

NC_011740
(Escherichia fergusonii ATCC 35469)

6e-97

237) I137_04205
( YP_008380372.1 )

integrase

NC_021984
(Salmonella enterica S06004)

6e-97

238) SeD_A2305
( YP_002216062.1 )

integrase

NC_011205
(Salmonella enterica CT_02021853)

8e-97

239) Dd703_3412
( YP_002988996.1 )

integrase family protein

NC_012880
(Dickeya dadantii Ech703)

9e-97

240) Dd1591_3537
( YP_003005827.1 )

integrase family protein

NC_012912
(Dickeya zeae Ech1591)

1e-96

241) ECNA114_2039
( YP_006139140.1 )

prophage P4 integrase

NC_017644
(Escherichia coli NA114)

1e-96

242) KPN2242_15195
( YP_005955494.1 )

integrase

NC_017540
(Klebsiella pneumoniae KCTC 2242)

1e-96

243) SBO_1221
( YP_407678.1 )

P4-type integrase

NC_007613
(Shigella boydii Sb227)

2e-96

244) SeAg_B2068
( YP_002146918.1 )

integrase

NC_011149
(Salmonella enterica SL483)

3e-96

245) CE10_2255
( YP_006144319.1 )

integrase

NC_017646
(Escherichia coli CE10)

3e-96

246) int
( YP_002407094.1 )

integrase

NC_011750
(Escherichia coli IAI39)

3e-96

247) NRG857_09860
( YP_006120327.1 )

integrase

NC_017634
(Escherichia coli NRG 857C)

3e-96

248) int
( YP_002920242.1 )

integrase

NC_012731
(Klebsiella pneumoniae NTUH-K2044)

3e-96

249) PPS_0628
( YP_004700093.1 )

phage integrase family protein

NC_015733
(Pseudomonas putida S16)

4e-96

250) E2348C_2119
( YP_002329631.1 )

integrase

NC_011601
(Escherichia coli E2348/69)

4e-96

251) int
( YP_002412985.1 )

integrase

NC_011751
(Escherichia coli UMN026)

4e-96

252) KPHS_34600
( YP_005227760.1 )

integrase

NC_016845
(Klebsiella pneumoniae HS11286)

4e-96

253) CKO_00917
( YP_001452503.1 )

hypothetical protein

NC_009792
(Citrobacter koseri ATCC BAA-895)

4e-96

254) ST548_p7779
( YP_007386819.1 )

Integrase

NC_020181
(Enterobacter aerogenes EA1509E)

4e-96

255) A79E_1712
( YP_006635522.1 )

integrase

NC_018522
(Klebsiella pneumoniae 1084)

4e-96

256) ROD_20671
( YP_003365620.1 )

integrase

NC_013716
(Citrobacter rodentium ICC168)

5e-96

257) KPK_1842
( YP_002237686.1 )

integrase

NC_011283
(Klebsiella pneumoniae 342)

5e-96

258) Entas_3110
( YP_004829618.1 )

integrase family protein

NC_015968
(Enterobacter asburiae LF7a)

6e-96

259) YpAngola_A2104
( YP_001606561.1 )

phage integrase family site specific recombinase

NC_010159
(Yersinia pestis Angola)

9e-96

260) KPK_1811
( YP_002237656.1 )

integrase

NC_011283
(Klebsiella pneumoniae 342)

1e-95

261) int2
( NP_993013.1 )

integrase

NC_005810
(Yersinia pestis 91001)

1e-95

262) YPA_1295
( YP_651207.1 )

integrase

NC_008150
(Yersinia pestis Antiqua)

1e-95

263) int
( YP_002346908.1 )

integrase

NC_003143
(Yersinia pestis CO92)

1e-95

264) int
( YP_005504895.1 )

integrase

NC_017154
(Yersinia pestis D106004)

1e-95

265) int
( YP_005508939.1 )

integrase

NC_017160
(Yersinia pestis D182038)

1e-95

266) y2393
( NP_669700.1 )

prophage integrase

NC_004088
(Yersinia pestis KIM)

1e-95

267) YPDSF_1208
( YP_001162577.1 )

integrase

NC_009381
(Yersinia pestis Pestoides F)

1e-95

268) PC1_0501
( YP_003016092.1 )

integrase family protein

NC_012917
(Pectobacterium carotovorum PC1)

2e-95

269) intB
( YP_008115659.1 )

putative prophage P4 integrase

NC_021505
(Pseudomonas putida NBRC 14164)

2e-95

270) Rahaq2_2650
( YP_005200640.1 )

Integrase

NC_016818
(Rahnella aquatilis CIP 78.65)

5e-95

271) SbBS512_E0979
( YP_001879655.1 )

site-specific recombinase, phage integrase family protein

NC_010658
(Shigella boydii CDC 3083-94)

1e-94

272) O3M_09700
( YP_006769591.1 )

integrase

NC_018650
(Escherichia coli 2009EL-2050)

1e-94

273) O3O_15890
( YP_006783716.1 )

integrase

NC_018661
(Escherichia coli 2009EL-2071)

1e-94

274) O3K_09735
( YP_006778644.1 )

integrase

NC_018658
(Escherichia coli 2011C-3493)

1e-94

275) int
( YP_002403247.1 )

integrase

NC_011748
(Escherichia coli 55989)

1e-94

276) ECABU_c49370
( YP_006108845.1 )

prophage P4 integrase

NC_017631
(Escherichia coli ABU 83972)

2e-94

277) W5S_1679
( YP_006282643.1 )

Prophage P4 integrase

NC_017845
(Pectobacterium sp. SCC3193)

3e-94

278) Rahaq2_1748
( YP_005199761.1 )

Integrase

NC_016818
(Rahnella aquatilis CIP 78.65)

4e-94

279) c5371
( NP_757219.1 )

prophage P4 integrase

NC_004431
(Escherichia coli CFT073)

5e-94

280) i14_4891
( YP_006156950.1 )

prophage P4 integrase

NC_017652
(Escherichia coli clone D i14)

5e-94

281) i02_4891
( YP_006152031.1 )

prophage P4 integrase

NC_017651
(Escherichia coli clone D i2)

5e-94

282) intB
( YP_008111337.1 )

putative prophage P4 integrase

NC_021505
(Pseudomonas putida NBRC 14164)

1e-93

283) PputW619_4935
( YP_001751780.1 )

integrase family protein

NC_010501
(Pseudomonas putida W619)

1e-93

284) LHK_01737
( YP_002795731.1 )

CP4 integrase protein

NC_012559
(Laribacter hongkongensis HLHK9)

8e-94

285) SBOV45841
( YP_008508356.1 )

hypothetical protein

NC_022241
(Salmonella enterica 3114)

2e-93

286) Pfl01_3064
( YP_348793.1 )

Phage integrase

NC_007492
(Pseudomonas fluorescens Pf0-1)

1e-92

287) Pecwa_1727
( YP_003259121.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

1e-92

288) ECP_1962
( YP_669862.1 )

bacteriophage integrase

NC_008253
(Escherichia coli 536)

2e-92

289) ECABU_c22620
( YP_006106313.1 )

P4-like integrase

NC_017631
(Escherichia coli ABU 83972)

2e-92

290) c2449
( NP_754341.1 )

prophage P4 integrase

NC_004431
(Escherichia coli CFT073)

2e-92

291) i14_2259
( YP_006154368.1 )

prophage P4 integrase

NC_017652
(Escherichia coli clone D i14)

2e-92

292) i02_2259
( YP_006149449.1 )

prophage P4 integrase

NC_017651
(Escherichia coli clone D i2)

2e-92

293) ECOK1_2168
( YP_006101333.1 )

integrase/recombinase, phage integrase family

NC_017628
(Escherichia coli IHE3034)

2e-92

294) intA_3
( YP_008571925.1 )

Prophage CP4-57 integrase

NC_022370
(Escherichia coli PMV-1)

2e-92

295) UM146_07190
( YP_006110343.1 )

bacteriophage integrase

NC_017632
(Escherichia coli UM146)

2e-92

296) UTI89_C2204
( YP_541203.1 )

prophage P4 integrase

NC_007946
(Escherichia coli UTI89)

2e-92

297) L483_01150
( YP_008092085.1 )

integrase

NC_021491
(Pseudomonas putida H8234)

2e-92

298) KPK_1799
( YP_002237646.1 )

integrase

NC_011283
(Klebsiella pneumoniae 342)

2e-90

299) Q7S_09690
( YP_005401739.1 )

integrase family protein

NC_017047
(Rahnella aquatilis HX2)

3e-88

300) BJAB0715_03144
( YP_008218292.1 )

Integrase

NC_021733
(Acinetobacter baumannii BJAB0715)

2e-84

301) ETA_03770
( YP_001906331.1 )

P4-type integrase

NC_010694
(Erwinia tasmaniensis Et1/99)

3e-83

302) SSON53_18230
( YP_005458150.1 )

P4-type integrase

NC_016822
(Shigella sonnei 53G)

2e-81

303) SbBS512_E4662
( YP_001882825.1 )

site-specific recombinase, phage integrase family protein

NC_010658
(Shigella boydii CDC 3083-94)

2e-81

304) SBO_4322
( YP_410566.1 )

P4-type integrase

NC_007613
(Shigella boydii Sb227)

2e-81

305) EC042_2207
( YP_006096513.1 )

integrase

NC_017626
(Escherichia coli 042)

6e-81

306) ETEC_2075
( YP_006115641.1 )

integrase

NC_017633
(Escherichia coli ETEC H10407)

8e-81

307) PSF113_0326
( YP_005205757.1 )

integrase

NC_016830
(Pseudomonas fluorescens F113)

2e-80

308) ECABU_c22350
( YP_006106291.1 )

site-specific recombinase

NC_017631
(Escherichia coli ABU 83972)

5e-80

309) LF82_294
( YP_002556846.1 )

Prophage P4 integrase

NC_011993
(Escherichia coli LF82)

5e-80

310) intB
( NP_900321.1 )

prophage CP4-like integrase

NC_005085
(Chromobacterium violaceum ATCC 12472)

6e-80

311) ECP_1936
( YP_669837.1 )

P4-like integrase

NC_008253
(Escherichia coli 536)

6e-79

312) c2418
( NP_754310.1 )

prophage P4 integrase

NC_004431
(Escherichia coli CFT073)

6e-79

313) i14_2235
( YP_006154344.1 )

prophage P4 integrase

NC_017652
(Escherichia coli clone D i14)

6e-79

314) i02_2235
( YP_006149425.1 )

prophage P4 integrase

NC_017651
(Escherichia coli clone D i2)

6e-79

315) ECSF_1824
( YP_003349814.1 )

phage integrase

NC_013654
(Escherichia coli SE15)

9e-79

316) ETAF_0751
( YP_005698365.1 )

Integrase

NC_017309
(Edwardsiella tarda FL6-60)

6e-78

317) ECSE_0264
( YP_002291539.1 )

putative phage integrase

NC_011415
(Escherichia coli SE11)

1e-77

318) A225_4904
( YP_006500577.1 )

phage integrase

NC_018106
(Klebsiella oxytoca E718)

1e-77

319) EcHS_A0329
( YP_001457101.1 )

site-specific recombinase, phage integrase

NC_009800
(Escherichia coli HS)

2e-77

320) KOX_02335
( YP_005016447.1 )

Integrase

NC_016612
(Klebsiella oxytoca KCTC 1686)

2e-76

321) SEEB0189_04710
( YP_008307295.1 )

integrase

NC_021844
(Salmonella enterica CFSAN000189)

3e-76

322) int
( YP_001908356.1 )

Prophage integrase

NC_010694
(Erwinia tasmaniensis Et1/99)

3e-76

323) O3M_00580
( YP_006767801.1 )

hypothetical protein

NC_018650
(Escherichia coli 2009EL-2050)

1e-75

324) O3O_25120
( YP_006781906.1 )

hypothetical protein

NC_018661
(Escherichia coli 2009EL-2071)

1e-75

325) O3K_00550
( YP_006776846.1 )

hypothetical protein

NC_018658
(Escherichia coli 2011C-3493)

1e-75

326) int
( YP_002383909.1 )

Integrase

NC_011740
(Escherichia fergusonii ATCC 35469)

1e-75

327) EcSMS35_0299
( YP_001742404.1 )

phage integrase family site specific recombinase

NC_010498
(Escherichia coli SMS-3-5)

6e-76

328) ybl160
( YP_003001213.1 )

ybl160

NC_012892
(Escherichia coli BL21(DE3))

9e-76

329) ECD_03516
( YP_003056085.1 )

hypothetical protein

NC_012971
(Escherichia coli BL21(DE3))

9e-76

330) CE10_4227
( YP_006146216.1 )

putative prophage integrase

NC_017646
(Escherichia coli CE10)

9e-76

331) intC
( NP_756353.1 )

prophage integrase

NC_004431
(Escherichia coli CFT073)

9e-76

332) ECBD_0066
( YP_003034330.1 )

integrase

NC_012947
(Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG)

9e-76

333) ECIAI39_4188
( YP_002410064.1 )

putative prophage integrase

NC_011750
(Escherichia coli IAI39)

9e-76

334) ECB_03516
( YP_003046695.1 )

Int

NC_012967
(Escherichia coli REL606)

9e-76

335) KPK_4426
( YP_002240225.1 )

phage integrase family site-specific recombinase

NC_011283
(Klebsiella pneumoniae 342)

1e-75

336) SSON_3744
( YP_312525.1 )

integrase

NC_007384
(Shigella sonnei Ss046)

2e-75

337) PAGR_g2495
( YP_005993222.1 )

site-specific recombinase, phage integrase family

NC_017554
(Pantoea ananatis PA13)

2e-75

338) APECO1_1051
( YP_853069.1 )

phage integrase

NC_008563
(Escherichia coli APEC O1)

3e-75

339) intA_2
( YP_008571903.1 )

Prophage CP4-57 integrase

NC_022370
(Escherichia coli PMV-1)

3e-75

340) UM146_07320
( YP_006110367.1 )

putative phage integrase

NC_017632
(Escherichia coli UM146)

3e-75

341) UTI89_C2177
( YP_541179.1 )

integrase

NC_007946
(Escherichia coli UTI89)

3e-75

342) intC
( YP_691185.1 )

integrase

NC_008258
(Shigella flexneri 8401)

3e-75

343) EAE_02780
( YP_004590770.1 )

Integrase

NC_015663
(Enterobacter aerogenes KCTC 2190)

4e-75

344) ECABU_c41260
( YP_006108090.1 )

putative phage integrase

NC_017631
(Escherichia coli ABU 83972)

4e-75

345) intC
( YP_006156223.1 )

putative prophage integrase

NC_017652
(Escherichia coli clone D i14)

4e-75

346) intC
( YP_006151304.1 )

putative prophage integrase

NC_017651
(Escherichia coli clone D i2)

4e-75

347) ETEC_3899
( YP_006117440.1 )

integrase

NC_017633
(Escherichia coli ETEC H10407)

4e-75

348) ETAC_13020
( YP_007630085.1 )

Prophage integrase

NC_020796
(Edwardsiella tarda C07-087)

6e-75

349) SFxv_4026
( YP_005729297.1 )

Sai integrase

NC_017328
(Shigella flexneri 2002017)

1e-74

350) S4835
( NP_839238.1 )

integrase

NC_004741
(Shigella flexneri 2457T)

1e-74

351) SF3698
( NP_709437.1 )

integrase

NC_004337
(Shigella flexneri 301)

1e-74

352) Q7A_2891
( YP_006297314.1 )

integrase

NC_017857
(Methylophaga sp. JAM1)

2e-74

353) UMNK88_5213
( YP_006136842.1 )

phage integrase

NC_017641
(Escherichia coli UMNK88)

3e-74

354) NAL212_1009
( YP_004294089.1 )

integrase family protein

NC_015222
(Nitrosomonas sp. AL212)

6e-74

355) PAU_01003
( YP_003039840.1 )

putative phage integrase

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

8e-74

356) YE4117
( YP_001008254.1 )

putative phage integrase

NC_008800
(Yersinia enterocolitica 8081)

1e-73

357) intL
( NP_290239.1 )

integrase for prophage 933L and the LEE pathogenicity island

NC_002655
(Escherichia coli EDL933)

1e-73

358) ECO55CA74_21080
( YP_006161321.1 )

putative integrase for prophage 933L and the LEE pathogenicity island

NC_017656
(Escherichia coli RM12579)

1e-73

359) ECs4534
( NP_312561.1 )

integrase

NC_002695
(Escherichia coli Sakai)

1e-73

360) intL
( YP_003080451.1 )

integrase for prophage 933L and the LEE pathogenicity island

NC_013008
(Escherichia coli TW14359)

1e-73

361) CDCO157_4272
( YP_006315138.1 )

putative integrase

NC_017906
(Escherichia coli Xuzhou21)

1e-73

362) int4
( NP_994857.1 )

integrase

NC_005810
(Yersinia pestis 91001)

9e-74

363) A1122_00590
( YP_005519823.1 )

integrase

NC_017168
(Yersinia pestis A1122)

9e-74

364) YpAngola_A3853
( YP_001608158.1 )

phage integrase family site specific recombinase

NC_010159
(Yersinia pestis Angola)

9e-74

365) int
( YP_002345935.1 )

integrase

NC_003143
(Yersinia pestis CO92)

9e-74

366) int
( YP_005504005.1 )

integrase

NC_017154
(Yersinia pestis D106004)

9e-74

367) int
( YP_005507871.1 )

integrase

NC_017160
(Yersinia pestis D182038)

9e-74

368) YPC_0922
( YP_005622895.1 )

integrase

NC_017265
(Yersinia pestis Harbin 35)

9e-74

369) y3271
( NP_670570.1 )

integrase

NC_004088
(Yersinia pestis KIM)

9e-74

370) YPN_3086
( YP_649013.1 )

integrase

NC_008149
(Yersinia pestis Nepal516)

9e-74

371) int
( YP_003567008.1 )

integrase

NC_014029
(Yersinia pestis Z176003)

9e-74

372) Pat9b_1012
( YP_004114892.1 )

integrase family protein

NC_014837
(Pantoea sp. At-9b)

2e-73

373) YPDSF_0629
( YP_001162011.1 )

integrase

NC_009381
(Yersinia pestis Pestoides F)

2e-73

374) YpsIP31758_0884
( YP_001399868.1 )

phage integrase family site specific recombinase

NC_009708
(Yersinia pseudotuberculosis IP 31758)

2e-73

375) int
( YP_071664.1 )

phage integrase

NC_006155
(Yersinia pseudotuberculosis IP 32953)

2e-73

376) YPTS_3293
( YP_001873705.1 )

integrase family protein

NC_010634
(Yersinia pseudotuberculosis PB1/+)

2e-73

377) YPK_0925
( YP_001719679.1 )

integrase family protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

2e-73

378) intB
( YP_001143574.1 )

phage integrase

NC_009348
(Aeromonas salmonicida A449)

4e-73

379) intL
( YP_003501848.1 )

CP4-like integrase

NC_013941
(Escherichia coli CB9615)

4e-73

380) ECH74115_5032
( YP_002273139.1 )

integrase

NC_011353
(Escherichia coli EC4115)

4e-73

381) int
( YP_003713510.1 )

integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

7e-73

382) ECP_3765
( YP_671637.1 )

phage integrase

NC_008253
(Escherichia coli 536)

1e-72

383) Dda3937_00938
( YP_003884289.1 )

Integrase

NC_014500
(Dickeya dadantii 3937)

3e-72

384) ETEC_0316
( YP_006113905.1 )

prophage integrase

NC_017633
(Escherichia coli ETEC H10407)

1e-71

385) O3K_20180
( YP_006780702.1 )

prophage CPS-53 integrase

NC_018658
(Escherichia coli 2011C-3493)

7e-72

386) EC55989_0268
( YP_002401394.1 )

prophage CPS-53 integrase

NC_011748
(Escherichia coli 55989)

7e-72

387) AHML_14825
( YP_008044080.1 )

phage integrase

NC_021290
(Aeromonas hydrophila ML09-119)

1e-71

388) ECABU_c03450
( YP_006104480.1 )

DNA integration/recombination/invertion protein

NC_017631
(Escherichia coli ABU 83972)

3e-71

389) SYN_01916
( YP_461774.1 )

DNA integration/recombination/inversion protein

NC_007759
(Syntrophus aciditrophicus SB)

6e-71

390) SeSA_A0666
( YP_002113632.1 )

integrase

NC_011094
(Salmonella enterica CVM19633)

1e-70

391) intS
( YP_004950715.1 )

prophage CPS-53 integrase

NC_016514
(Enterobacter cloacae EcWSU1)

1e-70

392) A11S_1005
( YP_007642445.1 )

phage integrase

NC_020812
(Micavibrio aeruginosavorus EPB)

2e-70

393) A3UG_04555
( YP_006476358.1 )

prophage CPS-53 integrase

NC_018079
(Enterobacter cloacae SDM)

4e-70

394) ESA_03025
( YP_001439090.1 )

hypothetical protein

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

5e-70

395) ECL_01076
( YP_003611586.1 )

hypothetical protein

NC_014121
(Enterobacter cloacae ATCC 13047)

1e-69

396) SeSA_A0374
( YP_002113350.1 )

site-specific recombinase, phage integrase family protein

NC_011094
(Salmonella enterica CVM19633)

2e-69

397) KN400_0440
( YP_006889485.1 )

integrase, bacteriophage P4-type

NC_017454
(Geobacter sulfurreducens KN400)

3e-69

398) EAE_06555
( YP_004591514.1 )

hypothetical protein

NC_015663
(Enterobacter aerogenes KCTC 2190)

1e-68

399) Selin_1494
( YP_004112783.1 )

integrase family protein

NC_014836
(Desulfurispirillum indicum S5)

1e-68

400) W5S_3565
( YP_006284507.1 )

Putative prophage CPS-53 integrase, CPS-53 (KpLE1) prophage

NC_017845
(Pectobacterium sp. SCC3193)

3e-68

401) W5S_1285
( YP_006282258.1 )

Putative prophage CPS-53 integrase, CPS-53 (KpLE1) prophage

NC_017845
(Pectobacterium sp. SCC3193)

8e-68

402) SEEH1578_01295
( YP_008244336.1 )

Phage integrase, Phage P4-associated protein

NC_021810
(Salmonella enterica 41578)

3e-67

403) SU5_03538
( YP_006089141.1 )

Phage integrase, Phage P4-associated

NC_017623
(Salmonella enterica B182)

3e-67

404) CFSAN002069_16980
( YP_008252158.1 )

integrase

NC_021812
(Salmonella enterica CFSAN002069)

3e-67

405) SeHA_C3266
( YP_002047021.1 )

site-specific recombinase, phage integrase family

NC_011083
(Salmonella enterica SL476)

3e-67

406) EKO11_0064
( YP_005275792.1 )

integrase family protein

NC_016902
(Escherichia coli KO11FL)

4e-67

407) KO11_04405
( YP_006163219.1 )

hypothetical protein

NC_017660
(Escherichia coli KO11FL)

4e-67

408) LY180_18845
( YP_008566814.1 )

integrase

NC_022364
(Escherichia coli LY180)

4e-67

409) ECW_m3936
( YP_006126516.1 )

putative integrase

NC_017635
(Escherichia coli W)

4e-67

410) WFL_19235
( YP_006175275.1 )

hypothetical protein

NC_017664
(Escherichia coli W)

4e-67

411) MADE_1010570
( YP_004427250.1 )

integrase

NC_011138
(Alteromonas macleodii Deep ecotype)

5e-67

412) P12B_c3788
( YP_006170775.1 )

Sai integrase-like protein

NC_017663
(Escherichia coli P12b)

1e-66

413) Dd586_3778
( YP_003335314.1 )

integrase family protein

NC_013592
(Dickeya dadantii Ech586)

1e-66

414) AMBLS11_09695
( YP_006824971.1 )

prophage CP4-like integrase

NC_018692
(Alteromonas macleodii Black Sea 11)

1e-66

415) SSON53_21650
( YP_005458822.1 )

hypothetical protein

NC_016822
(Shigella sonnei 53G)

1e-66

416) Mpe_A1087
( YP_001020283.1 )

prophage CP4-like integrase

NC_008825
(Methylibium petroleiphilum PM1)

2e-66

417) EAE_24695
( YP_004595111.1 )

putative integrase

NC_015663
(Enterobacter aerogenes KCTC 2190)

2e-66

418) Fraau_1988
( YP_005378057.1 )

Integrase

NC_017033
(Frateuria aurantia DSM 6220)

2e-66

419) amb0488
( YP_419851.1 )

integrase

NC_007626
(Magnetospirillum magneticum AMB-1)

2e-66

420) Y11_30661
( YP_006006565.1 )

phage integrase

NC_017564
(Yersinia enterocolitica Y11)

2e-66

421) SN31241_7100
( YP_008358628.1 )

CP4-like integrase

NC_021902
(Salmonella enterica USMARC-S3124.1)

2e-66

422) SeHA_C4738
( YP_002048369.1 )

integrase

NC_011083
(Salmonella enterica SL476)

5e-66

423) plu0125
( NP_927495.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

1e-65

424) EcE24377A_3377
( YP_001464377.1 )

site-specific recombinase, phage integrase

NC_009801
(Escherichia coli E24377A)

1e-65

425) RSc0968
( NP_519089.1 )

cp4-like integrase

NC_003295
(Ralstonia solanacearum GMI1000)

2e-65

426) EcSMS35_3112
( YP_001745129.1 )

site-specific recombinase, phage integrase family protein

NC_010498
(Escherichia coli SMS-3-5)

2e-65

427) YPK_0061
( YP_001718828.1 )

integrase family protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

5e-65

428) PSPTO_5344
( NP_795075.1 )

site-specific recombinase, phage integrase family

NC_004578
(Pseudomonas syringae DC3000)

5e-65

429) Dsui_0218
( YP_005026479.1 )

Integrase

NC_016616
(Dechlorosoma suillum PS)

9e-65

430) CSSP291_04405
( YP_007439767.1 )

putative integrase

NC_020260
(Cronobacter sakazakii Sp291)

2e-64

431) ECL_03688
( YP_003614171.1 )

putative integrase

NC_014121
(Enterobacter cloacae ATCC 13047)

2e-64

432) GBP346_A1152
( YP_002895874.1 )

site-specific recombinase, phage integrase family

NC_012695
(Burkholderia pseudomallei MSHR346)

2e-63

433) intS
( YP_003712222.1 )

CPS-53 (KpLE1) prophage; Sf6-like integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

4e-63

434) Tbd_2005
( YP_315763.1 )

cp4-like integrase

NC_007404
(Thiobacillus denitrificans ATCC 25259)

9e-63

435) C380_06330
( YP_006853614.1 )

phage integrase

NC_018708
(Acidovorax sp. KKS102)

2e-62

436) S70_17360
( YP_006217973.1 )

CPS-53 (KpLE1) prophage, Sf6-like integrase

NC_017731
(Providencia stuartii MRSN 2154)

3e-62

437) int
( YP_007495002.1 )

Integrase

NC_020409
(Desulfovibrio piezophilus C1TLV30)

4e-62

438) Fraau_3064
( YP_005379074.1 )

Integrase

NC_017033
(Frateuria aurantia DSM 6220)

6e-62

439) YPTB3886
( YP_072362.1 )

integrase

NC_006155
(Yersinia pseudotuberculosis IP 32953)

1e-61

440) YPTS_4103
( YP_001874506.1 )

integrase family protein

NC_010634
(Yersinia pseudotuberculosis PB1/+)

1e-61

441) PAU_01009
( YP_003039846.1 )

putative phage integrase

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

9e-61

442) NAL212_2545
( YP_004295511.1 )

integrase family protein

NC_015222
(Nitrosomonas sp. AL212)

1e-60

443) Nit79A3_1833
( YP_004695037.1 )

integrase

NC_015731
(Nitrosomonas sp. Is79A3)

3e-59

444) LFML04_0012
( YP_006765226.1 )

phage integrase family protein

NC_018649
(Leptospirillum ferriphilum ML-04)

7e-59

445) Galf_2041
( YP_003847811.1 )

integrase family protein

NC_014394
(Gallionella capsiferriformans ES-2)

8e-59

446) Fraau_2605
( YP_005378631.1 )

Integrase

NC_017033
(Frateuria aurantia DSM 6220)

1e-58

447) XCV2217
( YP_363948.1 )

phage-related integrase

NC_007508
(Xanthomonas campestris 85-10)

4e-58

448) NCGM2_0360
( YP_005978635.1 )

site-specific recombinase

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

6e-58

449) XALc_1632
( YP_003376121.1 )

phage-related integrase

NC_013722
(Xanthomonas albilineans GPE PC73)

2e-57

450) Pnap_2643
( YP_982866.1 )

phage integrase family protein

NC_008781
(Polaromonas naphthalenivorans CJ2)

5e-55

451) XBJ1_1315
( YP_003467235.1 )

CPS-53 (KpLE1) prophage; Sf6-like integrase (fragment)

NC_013892
(Xenorhabdus bovienii SS-2004)

3e-54

• Sequence Alignments

1) STY4821 in NC_003198


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  685 bits (2592),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/421 (100%), Positives = 421/421 (100%), Gaps = 0/421 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120
            VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300
            SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
            QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCNI  420
            DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCNI
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCNI  420

Query  421  K  421
            K
Sbjct  421  K  421

2) TY21A_22985 in NC_021176


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  685 bits (2592),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/421 (100%), Positives = 421/421 (100%), Gaps = 0/421 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120
            VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300
            SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
            QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCNI  420
            DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCNI
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCNI  420

Query  421  K  421
            K
Sbjct  421  K  421

3) t4518 in NC_004631


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  685 bits (2592),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/421 (100%), Positives = 421/421 (100%), Gaps = 0/421 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120
            VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300
            SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
            QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCNI  420
            DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCNI
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCNI  420

Query  421  K  421
            K
Sbjct  421  K  421

4) ENC_43890 in NC_021046


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  659 bits (2490),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 400/415 (97%), Positives = 410/415 (99%), Gaps = 0/415 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGEYTFETIGREWHASNKRWSEDHRS  120
            VTLAQARAKRDEAKKLLVQGIDPK+EQKEAQAENSG YTFETI+REWHASNKRWSEDHRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLEQLK  300
            SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAM+LLEQLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  QISGDKKLLFPGDHDTTKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
            QISGDK LLFPGDHD+TKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHTERNNVRAAYIHTSEHLDERRLMVQWWADYLDVNRDLHVTPYDFA  415
            DDAIERQLSH+ERNNVRAAYIHTSEHLDERRLMVQWWADYLD+ +  H+TPY++A
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYA  415

5) SEEB0189_19950 in NC_021844


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  658 bits (2489),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 398/417 (96%), Positives = 411/417 (99%), Gaps = 0/417 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHESNKRWSEDHRS  120
            VTLAQARAKRDEAKKLLVQGIDPK+EQKEAQAENSGAYTFETIAREWH SNKRWSEDHRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDTSGKHDVAQRLQQRVTAIMRYAVQN  180
            RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVD+SGKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLEQLK  300
            SSELRFARWDEFDFDKSLWR+PAKREEIKGVRYSYRGMKMKEEHIVPLSRQAM+LLEQLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
            QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  EDAIERQLSHSERNSVRAAYIHTSEHLDERRLMVQWWADYLDANKIKPISSFDYAKL  417
            +DAIERQLSHSERN+VRAAYIHTSEHLDERRLMVQWWADYLD  +   I++++YA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

6) ETAE_3092 in NC_013508


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  657 bits (2484),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/419 (96%), Positives = 412/419 (99%), Gaps = 0/419 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHDSNKRWSEDHRS  120
            VTLAQARAKRDEAKKLLVQGIDPK+EQKEAQAENSGAYTFETIAREWH SNKRWSEDHRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSYLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            RVLRYLELYIFPHIGSSDIRQLKTS LLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLDAYRGRVMTRIAVELSLLTFVR  240
            DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARL AYRGRVMTRIAVELSLLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLDQLK  300
            SSELRFARWDEFDFDKSLWR+PAKREEIKGVRYSYRGMKMKEEHIVPLSRQAM+LL+QLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
            QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDSCHKHQIAPYEFARIYK  419
            DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  + ++I+PYE+AR+ +
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCN  419

7) ECO26_5435 in NC_013361


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  657 bits (2483),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 397/416 (96%), Positives = 411/416 (99%), Gaps = 0/416 (0%)

Query  1    MKLNARQVETAKPKEKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPM  60
            MKLNARQVETAKPK+KTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWP 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120
            VTLAQARAKRDEAKKLLVQGIDPK+EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RILRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            R+LRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFSEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            DYIDSNPASDMAGALSTTKARHYPALPSSRF+EFLARLAAYRGRVMTRIAVELSLLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300
            SSELRFARWDEFDFDKSLWR+PAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  QISGDKELLFPGDHDAAKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
            QISGDKELLFPGDHDA+KVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHTERNNVRAAYIHTSEHLDERRLMVQWWADFLEANRNNSVTPYEFAK  416
            DDAIERQLSH+ERNNVRAAYIHTSEHLDERRLMVQWWAD+L+  + + +TPYE+A+
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

8) KPHS_05400 in NC_016845


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  657 bits (2483),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 400/417 (96%), Positives = 410/417 (99%), Gaps = 0/417 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTLAQARTKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120
            VTLAQAR+KRDEAKKLLVQGIDPK+EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWDEFDFAKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAIVLLEQLK  300
            SSELRFARWDEFDF KSLWR+PAKREEIKGVRYSYRGMKMKEEHIVPLSRQA+VLLEQLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  QISGDKELLFPGDHDATKVMSENTVNGALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
            QISGDKELLFPGDHDATKVMSENTVN+ALRAMGYDTKTEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLKSNEGKIVTPYEFAKI  417
            DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYL   +   +TPYE+A++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

9) N559_4601 in NC_022082


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  657 bits (2483),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 400/417 (96%), Positives = 410/417 (99%), Gaps = 0/417 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTLAQARTKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120
            VTLAQAR+KRDEAKKLLVQGIDPK+EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWDEFDFAKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAIVLLEQLK  300
            SSELRFARWDEFDF KSLWR+PAKREEIKGVRYSYRGMKMKEEHIVPLSRQA+VLLEQLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  QISGDKELLFPGDHDATKVMSENTVNGALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
            QISGDKELLFPGDHDATKVMSENTVN+ALRAMGYDTKTEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLKSNEGKIVTPYEFAKI  417
            DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYL   +   +TPYE+A++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

10) SSPA3984 in NC_011147


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  657 bits (2483),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 397/417 (96%), Positives = 410/417 (99%), Gaps = 0/417 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHESNKRWSEDHRS  120
            VTLAQARAKRDEAKKLLVQGIDPK+EQKEAQAENSGAYTFETIAREWH SNKRWSEDHRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKEVDTSGKHDVAQRLQQRVTAIMRYAVQN  180
            RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIK VD+SGKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLEQLK  300
            SSELRFARWDEFDFDKSLWR+PAKREEIKGVRYSYRGMKMKEEHIVPLSRQAM+LLEQLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
            QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  EDAIERQLSHSERNSVRAAYIHTSEHLDERRLMVQWWADYLDANKIKPISSFDYAKL  417
            +DAIERQLSHSERN+VRAAYIHTSEHLDERRLMVQWWADYLD  +   I++++YA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

11) int in NC_006511


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  657 bits (2483),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 397/417 (96%), Positives = 410/417 (99%), Gaps = 0/417 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHESNKRWSEDHRS  120
            VTLAQARAKRDEAKKLLVQGIDPK+EQKEAQAENSGAYTFETIAREWH SNKRWSEDHRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKEVDTSGKHDVAQRLQQRVTAIMRYAVQN  180
            RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIK VD+SGKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLEQLK  300
            SSELRFARWDEFDFDKSLWR+PAKREEIKGVRYSYRGMKMKEEHIVPLSRQAM+LLEQLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
            QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  EDAIERQLSHSERNSVRAAYIHTSEHLDERRLMVQWWADYLDANKIKPISSFDYAKL  417
            +DAIERQLSHSERN+VRAAYIHTSEHLDERRLMVQWWADYLD  +   I++++YA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

12) SNSL254_A4836 in NC_011080


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  656 bits (2478),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/419 (96%), Positives = 412/419 (99%), Gaps = 0/419 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120
            VTLAQARAKRDEAKKLLVQGIDPK+EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAVMRYAVQN  180
            RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTA+MRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSLQAMALLEQLK  300
            SSELRFARWDEFDFDKSLWR+PAKREEIKGVRYSYRGMKMKEEHIVPLS QAM LLEQLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  QMSGDKELLFPGDHDPTKVMSENTVNSALRAMGYDTKTDVCGHGFRTMARGALGESGLWS  360
            Q+SGDKELLFPGDHD+TKVMSENTVNSALRAMGYDTKT+VCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDEIKIIYITPYDFAKMNN  419
            DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD I+   ITPY++A++ N
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCN  419

13) SN31241_8570 in NC_021902


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  655 bits (2476),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 400/417 (96%), Positives = 411/417 (99%), Gaps = 0/417 (0%)

Query  5    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  64
            MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  65   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  124
            VTLAQARAKRDEAKKLLVQGIDPK+EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  125  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAVMRYAVQN  184
            RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTA+MRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  185  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  244
            DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  245  SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSLQAMALLEQLK  304
            SSELRFARWDEFDFDKSLWR+PAKREEIKGVRYSYRGMKMKEEHIVPLS QAM LLEQLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  305  QMSGDKELLFPGDHDPTKVMSENTVNSALRAMGYDTKTDVCGHGFRTMARGALGESGLWS  364
            Q+SGDKELLFPGDHD+TKVMSENTVNSALRAMGYDTKT+VCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  365  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDEIKIIYITPYDFAKM  421
            DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD I+   ITPY++A++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

14) ECOK1_4788 in NC_017628


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  654 bits (2473),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 399/416 (96%), Positives = 410/416 (99%), Gaps = 0/416 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTLAQARAKRDEAKKLLVQGIDPKVVQKEARAENSGAYTFEAIAREWHASNKRWSEDHRS  120
            VTLAQARAKRDEAKKLLVQGIDPK  QKEA+AENSGAYTFE+IAREWHASNKRWSEDHRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLNQLK  300
            SSELRFARWDEFDFDKSLWR+PAKREEIKGVRYSYRGMKMKEEHIVPLSRQAM+LL+QLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
            QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMMQWWADYLDMNRNKYITPYDYSK  416
            DDAIERQLSHSERNNVRAAYIHTSEHLDERRLM+QWWADYLD+ +   ITPY+Y++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

15) intA_4 in NC_022370


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  642 bits (2425),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 389/416 (94%), Positives = 405/416 (98%), Gaps = 0/416 (0%)

Query  1    MKLNARQVETAKPKEKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            MKLNARQVETAKPK+KTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKQAHAENSGAYTFETIAREWHASNKRWSEDHRS  120
            VTLAQARAKRDEAKKLLVQGIDPKTEQK+A+AENSGAYTFETIAREWHASNKRWSEDHRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVLRYLELYIFPHIGSSDIRLLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            RVLRYLELYIFPHIGSSDIR LKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMAGALSTTKVRHYPALPSSRLPEFLSRLAAYRGRVMTRIAVELSLLTFVR  240
            DYIDSNPASDMAGALSTTK RHYPALPSSR+PEFL+RLAAYRGRVMTRIAVELSLLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWNEFDFDKALWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMNLLGQLK  300
            SSELRFARW+EFDFDK+LWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAM LL QLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  QISGDRKLLFPGDHDATKVMSENTVNNALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
            QISGD+ LLFPGDHDATKVMSENTVN+ALRAMGYDTKTEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMMQWWADYIDHNKIMYTTPFDFAK  416
            DDAIERQLSHSERNNVRAAYIHTSEHLDERRLM+QWWADY+D  +    TP+++A+
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

16) SBO_4174 in NC_007613


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  627 bits (2368),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 398/417 (96%), Positives = 410/417 (99%), Gaps = 0/417 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTlaqarakrdqakkllaqGIDPKAEQKEAQAENSGAYSFETIAREWHASNKRWSEDHRS  120
            VTLAQARAKRD+AKKLL QGIDPK+EQKEAQAENSGAY+FETIAREWHASNKRWSEDHRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVQLSRQAMILLNQLK  300
            SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIV LSRQAM+LL+QLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
            QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  EDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLQANKGKTITPYDFAKI  417
            +DAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYL+  +   ITPY++A++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

17) EbC_39600 in NC_014306


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  571 bits (2156),  Expect = 3e-164, Method: Compositional matrix adjust.
 Identities = 358/416 (87%), Positives = 393/416 (95%), Gaps = 0/416 (0%)

Query  1    MKLNARLVDTAKPKEKTYKMADGGGLYLEVTTKGSKYWRMKYRRPADKKEDRLAFGVWPT  60
            MKLNAR V+TAKPK+KTYKMADGGGLYLEV++KGSKYWRMKYRRP+DKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTLaearakrdeakkMLGQGIDPkaeqkeaqaeNAGAYTFETIAREWHASNKRWSDDHRS  120
            VTLA+ARAKRDEAKK+L QGIDPK+EQKEAQAEN+GAYTFETIAREWHASNKRWS+DHRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RIMRYLELYIFPHIGLADVRRLKTSQLLAPIKSVDASGRHDVAQRLQQRVTAIMRYAVQN  180
            R++RYLELYIFPHIG +D+R+LKTS+LLAPIK VDASG+HDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIESNPAVDMAGALSTVKARHYPALPFSGFPEFLERLAAYRGRIMTRIAVELSLLTFVR  240
            DYI+SNPA DMAGALST KARHYPALP S FPEFL RLAAYRGR+MTRIAVELSLLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWDEFDFERALWRVPAQRKEIEGVRYSHRGMKMKEEHLVPLSSQVLALLEKLK  300
            SSELRFARWDEFDF+++LWRVPA+R EI GVRYS RGMKMKEEH+VPLS Q + LLE+LK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  QLSGDNERLFPGDHDPKKVMSENTVNNALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
            Q+SGD+E LFPGDHD+ KVMSENTVN+ALRAMGYDTKTEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERCLMVQWWADYLSINRECYISPFDYAK  416
            DDAIERQLSHSERNNVRAAYIHTSEHLDER LMVQWWADYL I +   I+P++YA+
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

18) Dda3937_01301 in NC_014500


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  570 bits (2151),  Expect = 7e-164, Method: Compositional matrix adjust.
 Identities = 359/419 (86%), Positives = 399/419 (96%), Gaps = 0/419 (0%)

Query  1    MKLNARQVETAKPKEKTYKMADGGGLYLEITPRGSKYWRMKYRRPDDKKEDRLAFGVWPT  60
            MKLNARQVETAKPK+KTYKMADGGGLYLE++++GSKYWRMKYRRP DKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTladarakrdeakkllVQGIDPkaeqkeaqaeTAGAYTFETIARQWHASNKRWGDYHRA  120
            VTLA+ARAKRDEAKKLLVQGIDPK+EQKEAQAE +GAYTFETIAR+WHASNKRW++ HR+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVMRYLELYIFPHIGTADIRKLKTSHLLAPIKAVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            RV+RYLELYIFPHIG++DIR+LKTSHLLAPIK VDASGKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMSGALTTTKARHYPALPPERLHEFLSRLAAYRGRQMTRIAVELTLLTFVR  240
            DYIDSNPASDM+GAL+TTKARHYPALP+ R+ EFL+RLAAYRGR MTRIAVEL+LLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFAQWHEFDFDKAYWRVPAQREAIKGVRYSYRGMKMKEEHIVPLSRQAVALLEQLK  300
            SSELRFA+W+EFDFDK+ WRVPA+RE IKGVRYSYRGMKMKEEHIVPLSRQA+ LLEQLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  AISGDNKCLFPGDHDPEKVMSENTVNNALRAMGYDTQTEVCGHGFRTMARGALGESGLWS  360
             ISGD+  LFPGDHD+ KVMSENTVN+ALRAMGYDT+TEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHSERNNVRAAYTHTSEYLDERRLMVQWWADYLEVLKREYITSYDFAKMSG  419
            DDAIERQLSHSERNNVRAAY HTSE LDERRLMVQWWADYL++++ E IT+Y++A++  
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCN  419

19) Dd703_3554 in NC_012880


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  565 bits (2134),  Expect = 2e-162, Method: Compositional matrix adjust.
 Identities = 360/415 (87%), Positives = 393/415 (95%), Gaps = 0/415 (0%)

Query  1    MKLNARQVETAKPKEKTYKMADGGGLYLEITPRGSKYWRMKYRRPDDKKEDRLAFGVWPT  60
            MKLNARQVETAKPK+KTYKMADGGGLYLE++++GSKYWRMKYRRP DKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTlaearakrdeakkllVQGIDPkaeqkeaqaeTAGAYTFETIARQWHASNKRWGDYHRA  120
            VTLA+ARAKRDEAKKLLVQGIDPK+EQKEAQAE +GAYTFETIAR+WHASNKRW++ HR+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVMRYLELYIFPHIGTADIRKLKTSHLLAPIKAVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            RV+RYLELYIFPHIG++DIR+LKTSHLLAPIK VDASGKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMSGALTTTKARHYPALPPERLHEFLSRLAAYRGRQMTRIAVELTLLTFVR  240
            DYIDSNPASDM+GAL+TTKARHYPALP+ R+ EFL+RLAAYRGR MTRIAVEL+LLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFAQWREFDFDKAYWRVPAQREAIKGVRYSYRGMKMKEEHIVPLSRQAVALLEQLK  300
            SSELRFA+W EFDFDK+ WRVPA+RE IKGVRYSYRGMKMKEEHIVPLSRQA+ LLEQLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  AISGDNKCLFPGDHDPEKVMSENTVNNALRAMGYDTQTEVCGHGFRTMARGALGESGLWS  360
             ISGD+  LFPGDHD+ KVMSENTVN+ALRAMGYDT+TEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHSERNNVRAAYTHTSEYLDERRLMVQWWADYLDANRKETTAPYDYA  415
            DDAIERQLSHSERNNVRAAY HTSE LDERRLMVQWWADYLD  + E  +PY+YA
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYA  415

20) PCC21_004050 in NC_018525


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  562 bits (2120),  Expect = 2e-161, Method: Compositional matrix adjust.
 Identities = 350/421 (84%), Positives = 392/421 (94%), Gaps = 4/421 (0%)

Query  1    MKLNARQVETAKPKEKTYKMADGGDLYLEITTRGSKYWRMKYRRPIDKKEDRLAFGVWPT  60
            MKLNARQVETAKPK+KTYKMADGG+LYLE++++GSKYWRMKYRRP DKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTladarakrdeakkllVQGIDPKAEQKEVQAESEGAYTFETVARQ----QQALGDYHRS  116
            VTLA+ARAKRDEAKKLLVQGIDPK+EQKE QAE+ GAYTFET+AR+    ++  ++ HRS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  117  RVIRYLEMYISPEIGASDIRKLKTSHLLAPIKAVDASGKHDVAQRLQQRITAIMRYAVQN  176
            RV+RYLE+YI P+IG+SDIR+LKTSHLLAPIK VDASGKHDVAQRLQQR+TAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  177  DYIESNPAGDMAGALTTTKARHYPALPSVRFPEFLSRLAAYRGRLLTRCAVELMLLTFVR  236
            DYI+SNPA+DMAGAL+TTKARHYPALPS RFPEFL+RLAAYRGR++TR AVEL LLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  237  SSELRFAQWREFDFDSAEWRIPAQREEIEGVRYSYRGMKMKEEHVVPLSNQALAVLAKLH  296
            SSELRFA+W EFDFD + WR+PA+REEI GVRYSYRGMKMKEEH+VPLS QA+ +L +L 
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  297  ALSGDNPRLFPSDHNPEKVMSENTVNSALRTMGYDTKTEVCGHGFRTIARGALGESGLWS  356
             +SGD+  LFP+DH++ KVMSENTVNSALR+MGYDTKTEVCGHGFRT+ARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  357  DDAIERQLSHSERNNVRAAYIHTSEYLDERRLMVQWWADYLDIIQYEHITPYEYARVRNI  416
            DDAIERQLSHSERNNVRAAYIHTSE LDERRLMVQWWADYLDIIQYEHITPYEYARV NI
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCNI  420

Query  417  K  417
            K
Sbjct  421  K  421

21) Dd1591_3717 in NC_012912


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  560 bits (2115),  Expect = 5e-161, Method: Compositional matrix adjust.
 Identities = 357/417 (86%), Positives = 395/417 (95%), Gaps = 0/417 (0%)

Query  1    MKLNARQVETAKPKEKTYKMADGGGLYLEITPRGSKYWRMKYRRPDDKKEDRLAFGVWPT  60
            MKLNARQVETAKPK+KTYKMADGGGLYLE++++GSKYWRMKYRRP DKKEDRLAFGVWPT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VTlaearakrdeakkllVQGIDPkaeqkeaqaeTAGAYTFETIARQWHASNKRWGDYHRA  120
            VTLA+ARAKRDEAKKLLVQGIDPK+EQKEAQAE +GAYTFETIAR+WHASNKRW++ HR+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVMRYLELYIFPHIGTADIRKLKTSHLLAPIKAVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            RV+RYLELYIFPHIG++DIR+LKTSHLLAPIK VDASGKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DYIDSNPASDMSGALTTTKARHYPALPPERLHEFLSRLAAYRGRQMTRIAVELTLLTFVR  240
            DYIDSNPASDM+GAL+TTKARHYPALP+ R+ EFL+RLAAYRGR MTRIAVEL+LLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFAQWREFDFDKAYWRVPAQREAIKGVRYSYRGMKMKEEHIVPLSRQAVALLEQLK  300
            SSELRFA+W EFDFDK+ WRVPA+RE IKGVRYSYRGMKMKEEHIVPLSRQA+ LLEQLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  AISGDNKCLFPGDHDPEKVMSENTVNNALRAMGYDTQTEVCGHGFRTMARGALGESGLWS  360
             ISGD+  LFPGDHD+ KVMSENTVN+ALRAMGYDT+TEVCGHGFRTMARGALGESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHSERNNVRAAYTHTSEYLDERRLMVQWWADYLDANREWYVTAYDFGKL  417
            DDAIERQLSHSERNNVRAAY HTSE LDERRLMVQWWADYLD  +   +T+Y+++++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

22) PAU_03981 in NC_012962


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  531 bits (2004),  Expect = 3e-152, Method: Compositional matrix adjust.
 Identities = 313/415 (76%), Positives = 370/415 (90%), Gaps = 0/415 (0%)

Query  1    MKLNARQIETAKPKDKAYKLADGGGLYLEITPRGSKYWRMKYRRPTDKKEDRLAFGVYPV  60
            MKLNARQ+ETAKPKDK+YK+ADGGGLYLE++++GSKYWRMKYRRP+DKKEDRLAFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   ISLadarakrdeakkLIASGVDPKATQKEAQAEVSGEFNFETIARKWHASNKRWGDYNRA  120
            ++LA+ARAKRDEAKKL+  G+DPK+ QKEAQAE SG + FETIAR WHASNKRW++ +R+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVLRSLEQYIFPHIGKVDVRQLKTSHLLAPIRVVDDAGKHDVAQRLQQRVTAIMRYAVQN  180
            RVLR LE YIFPHIG  D+RQLKTSHLLAPI+ VD +GKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DIIDSNPAIDMAGALTMPKTKHYPALPSNCFPELLERINRYCGRKITRLAVVLTLLTFVR  240
            D IDSNPA DMAGAL+  K++HYPALPS+ FPE+L R+  Y GR +TR+AV L+LLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWDEIDFDISVWQIPGQRNPIEGVRYSYRGMKMKSAHIVPLSNQAIDVLQQLK  300
            SSELRFARWDE+DFD S+W++P++R+ I GVRYSYRGMKMK  HIVPLS QA+ +L+QLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  ELSGDNELLFPGDHDPNKVMSENTVNNALRVMGYDTKTEVCGHGFRAMACSALVESGLWS  360
            ++SGD+ELLFPGDHD+ KVMSENTVN+ALR MGYDTKTEVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  KDAVERQMSHTERNGVRAAYIHTSEHLEERRLMIQWWADYLDQCKKEFIAPYVFS  415
             DA+ERQ+SH+ERN VRAAYIHTSEHL+ERRLM+QWWADYLD  + E I+PY ++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYA  415

23) intB in NC_014228


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  525 bits (1982),  Expect = 2e-150, Method: Compositional matrix adjust.
 Identities = 314/417 (76%), Positives = 376/417 (91%), Gaps = 0/417 (0%)

Query  1    MKLNARQIETAKPKEKNYKLADGGGLYLEVTSRGSKYWRMKYRRPTDKKEDRLAFGVYPT  60
            MKLNARQ+ETAKPK+K YK+ADGGGLYLEV+++GSKYWRMKYRRP+DKKEDRLAFGV PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VSladarakrdeakkllaQGINPKAEQKEAQSESEGVFTFEHIAREWRASNKRWSEDHSG  120
            V+LA+ARAKRDEAKKLL QGI+PK+EQKEAQ+E+ G +TFE IAREW+ASNKRWSEDH +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RIMRSLEQYIFPHIGALDVRTLRTSHLLTPIKSVDINGKHDVAQRLQQRVTAIMRYAVQN  180
            R++R LE YIFPHIG+ D+R L+TSHLL+PIK VD +GKHDVAQRLQQRVTAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  GILEYSPANDMAGALTIVKSKHHAALPHECLPEFLTRLSCYRGRLITRIAVELTLLTFVR  240
            + ++ +PA+DMAGAL+  K++H +ALP   +PEFL+RL+ YRGR++TRIAVEL+LLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSEMRFARWEEIDLERAVWCVPATRKLIEGVKHSQRGMKMKTEHIVPLSRQAVLLIEKLH  300
            SSE+RFARW+E+D+++++W VPA R  I GV+ S RGMKMK EHIVPLSRQA++L+E+L 
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  GLSGDSEVMFPGDHDPKKVMSENTVNNALRAMGYDTKTEVCGHGLRTMARGAMGESGLWS  360
             +SGD E++FPGDHD+ KVMSENTVN+ALRAMGYDTKTEVCGHG+RTMARGA+GESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHIERNNVRAAYIHTSKHLDERRLMVQWWADYLDANREKHITPYDFAKT  417
            DDAIERQLSH ERNNVRAAYIHTS HLDERRLMVQWWADYLD  +  HITPY++A+ 
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

24) intB in NC_014228


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  525 bits (1981),  Expect = 2e-150, Method: Compositional matrix adjust.
 Identities = 307/416 (74%), Positives = 374/416 (90%), Gaps = 0/416 (0%)

Query  1    MKLNARQIETAKPKEKTYKLADGGGLYLEITSRGSKYWRMKYRRPTDKKEDRLAFGVYPV  60
            MKLNARQ+ETAKPK+KTYK+ADGGGLYLE++++GSKYWRMKYRRP+DKKEDRLAFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VSLadarakrdeakkLIAQGSDPKAEKKGAQTESKGAPSFEQVAREWHASNKRWSEDHSN  120
            V+LA+ARAKRDEAKKL+ QG DPK+E+K AQ+E+ GA +FE +AREWHASNKRWSEDH +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RILRSLEHYIFPHIGRLDISTLRTSQLLAPIKSVDADGKHDIAQRLQQRVTSIMRYAVQN  180
            R+LR LE YIFPHIG  DI  L+TS+LLAPIK VDA GKHD+AQRLQQRVT+IMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DILESNPANDMSGALSTVKAKHHPALPHERLPEFLTRLSHYRGRLITQIAVELTLLTFVR  240
            D ++SNPA+DM+GALST KA+H PALP  R+PEFL+RL+ YRGR++T+IAVEL+LLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWEELDLENAVWKIPATRKPIEGVKFSERGMKMKTEHIVPLSRQAVSLFKILQ  300
            SSELRFARW+E+D+++++W++PA R  I GV++S RGMKMK EHIVPLSRQA+ L+  L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  GLSGECEVMFPHDHNPAKVMSESTVNNALRGMGYDTKTEVCGHGFRTMARGAMGESGLWN  360
             +SG+ E++FP DH+++KVMSE+TVN+ALR+MGYDTKTEVCGHGFRTMARGA+GESGLW+
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHVERKNVRAAYIHTSKHLDERQLMVQWWADYLDANREKYITPYDFAK  416
            DDAIERQLSH ER+NVRAAYIHTS HLDER+LMVQWWADYLD  +   ITPY++A+
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

25) intB in NC_013892


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  520 bits (1961),  Expect = 8e-149, Method: Compositional matrix adjust.
 Identities = 300/416 (73%), Positives = 371/416 (90%), Gaps = 1/416 (0%)

Query  1    MKLNARQIETAKPKEKTYKLADGGGLYLEVSSRGSKYWRMKYYRPTDKKEDRLAFGVYPT  60
            MKLNARQ+ETAKPK+KTYK+ADGGGLYLEVS++GSKYWRMKY RP+DKKEDRLAFGV PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VSLadarakrdeakkLMAQGIDPKAEKKGTPTPAKVN-SFEQVARAWHASNKRWSDSHRQ  119
            V+LA+ARAKRDEAKKL+ QGIDPK+E+K + +      +FE +AR WHASNKRWS+ HR 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  120  KILRSLEQYIFPHIGARDITTLRTSQLLAPVKAIDEQDKHDIAQRLRQRITAIMRYAVQN  179
            ++LR LE YIFPHIG+ DI  L+TS+LLAP+K +D  +KHD+AQRL+QR+TAIMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  180  DILESNPANDMTGALTTAKSRHHPALPHECLPDFLNRLSAYRGRLLTKIAVELALLTFVR  239
            D ++SNPA+DM+GAL+T+K+RH PALP   +P+FL RL+AYRGR++T+IAVEL+LLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  240  SSELRFARWQEIDLENSVWKIPATRQPIKGVRFSERGMKMKTDHIVPLSRQAVGLINALH  299
            SSELRFARW+E+D+++S+W++PA R+ IKGVR+S RGMKMK +HIVPLSRQA+ L++ L 
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  300  ELSGNCDVMFPSDHNSAKVMSENTVNKALRAMGYDTQTEVCGHGFRTMARGAMGESGLWS  359
            ++SG+ +++FP+DH+++KVMSENTVN ALRAMGYDT+TEVCGHGFRTMARGA+GESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  360  DDAIERQLSHIERNNVRAAYIHTSKHLDERRLMVQWWADYLDANREKPITPYDFAK  415
            DDAIERQLSH ERNNVRAAYIHTS HLDERRLMVQWWADYLD  +   ITPY++A+
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

26) intB in NC_014228


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  519 bits (1957),  Expect = 2e-148, Method: Compositional matrix adjust.
 Identities = 302/416 (73%), Positives = 371/416 (90%), Gaps = 0/416 (0%)

Query  1    MKLNARQIEAAEPKEKTYKLADGGGLYLEITSRGSKYWRMKYRRPTDKKEDRLAFGVYPV  60
            MKLNARQ+E+A PK+KTYK+ADGGGLYLE++++GSKYWRMKYRRP+DKKEDRLAFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VSLadarakrdeakkLIAQGADPKAEKKGAQAESKGAPSFEQVAREWHASNKRWSEDHSN  120
            V+LA+ARAKRDEAKKL+ QG DPK+E+K AQAE+ GA +FE +AREWHASNKRWSEDH +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RILRSLEHYIFPHIGKLDISTLRTSQLLAPIKSVDADGKHDIAQRLQQRVTSIMRYAVQN  180
            R+LR LE YIFPHIG  DI  L+TS+LLAPIK VDA GKHD+AQRLQQRVT+IMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DILESNPANDMSGALSTVKAKHHPALPHERLPEFLTHLSHYRGRLITQIAVELTLLTFVR  240
            D ++SNPA+DM+GALST KA+H PALP  R+PEFL++L+ YRGR++T+IAVEL+LLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWEELDLENAVWKIPATRKPIEGVKCSERGMKMKTGHIVPLSRQAVSLFKTLQ  300
            SSELRFARW+E+D+++++W++PA R  I GV+ S RGMKMK  HIVPLSRQA+ L+  L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  DLSGECEVMFPHNHNLAKVMSESTVNNALRGMGYDTKTDVCGHGFRTMARGAMGESGLWN  360
            ++SG+ E++FP +H+ +KVMSE+TVN+ALR+MGYDTKT+VCGHGFRTMARGA+GESGLW+
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHVERKNVRAAYIHTSKHLDERQLMVQWWADYLDANREKYITPYDFAK  416
            DDAIERQLSH ER+NVRAAYIHTS HLDER+LMVQWWADYLD  +   ITPY++A+
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

27) intB in NC_013892


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  511 bits (1927),  Expect = 4e-146, Method: Compositional matrix adjust.
 Identities = 303/416 (73%), Positives = 371/416 (90%), Gaps = 0/416 (0%)

Query  1    MKLNARQIETAKPKEKTYKLADGGGLYLEITSRGSKYWHMKYRRPTDKKEDRLAFGVYPI  60
            MKLNARQ+ETAKPK+KTYK+ADGGGLYLE++++GSKYW+MKYRRP+DKKEDRLAFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   VSLadarakrdeakkLIAQGSDPKAEKRGTQLESKGAPSFEQVAREWHASNKRWSEDHSN  120
            V+LA+ARAKRDEAKKL+ QG DPK+E++ +Q E+ GA +FE +AREWHASNKRWSEDH +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RILRSLEHYIFPHIGKLDISTVRTSQLLAPIKSVDADGKHDIAQRLQQRVTSIMRYAVQN  180
            R+LR LE YIFPHIG  DI  ++TS+LLAPIK VDA GKHD+AQRLQQRVT+IMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DILESNPANDMSGALSTVKAKHHPALPHERLPEFLTRLSHYRGRLITQIAVELTLLTFVR  240
            D ++SNPA+DM+GALST KA+H PALP  R+PEFL+RL+ YRGR++T+IAVEL+LLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWEELDLENAVWKIPATRKPIEGVKFSERGMKMKTEHIVPLSRQAVSLFKILQ  300
            SSELRFARW+E+D+++++W++PA R  I GV++S RGMKMK EHIVPLSRQA+ L+  L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  GLSGECEVMFPHDHNPAKVMSESTVNNALRVMGYDTKTEVWGHGFRTMARGAMGESGLWN  360
             +SG+ E++FP DH+++KVMSE+TVN+ALR MGYDTKTEV GHGFRTMARGA+GESGLW+
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHVERKNVRAAYIHTSKHLDERRLMVQWWADYLDANREKYITPYDFAK  416
            DDAIERQLSH ER+NVRAAYIHTS HLDERRLMVQWWADYLD  +   ITPY++A+
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

28) SeAg_B4773 in NC_011149


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  498 bits (1878),  Expect = 3e-142, Method: Compositional matrix adjust.
 Identities = 304/417 (73%), Positives = 357/417 (86%), Gaps = 0/417 (0%)

Query  1    MKLNARQIETAKPKEKAYKMADGGGLYLEVSPKGSKYWRMKYRRPSDKKEDRLAFGVYPT  60
            MKLNARQ+ETAKPK+K+YKMADGGGLYLEVS+KGSKYWRMKYRRPSDKKEDRLAFGV PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   ITlaearakrdaakkllSQGIDPKVEQKGAQAEIEGAYLFETIARQWHASNLTWSEDHSH  120
            +TLA+ARAKRD AKKLL QGIDPK EQK AQAE  GAY FETIAR+WHASN  WSEDH  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVLLTLEQYIFPSIGQIDARTLRTSQLLNPIKAVDTAGKHDVAQRLMQRVNAIMRFGVQN  180
            RVL  LE YIFP IG  D R L+TS+LL PIK VD++GKHDVAQRL QRV AIMR++VQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  DLLESNPASDMAGALLSVKATHHPALPPKRIPEFLERLSRYKGRLMTRLAVELTLLTFIR  240
            D ++SNPASDMAGAL + KA H PALP+ R+PEFL RL+ Y+GR+MTR+AVEL+LLTF+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSEMRFARWSEVNFERSEWTIPGIRKPIPGVKHSERGMKMKTEHIVPLSKQAFDIFKRLH  300
            SSE+RFARW E +F++S W +P+ R  I GV+ S RGMKMK EHIVPLS+QA  ++ +L 
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  ALSGKGEVIFPSDHDPKKVMSENTVNSALRVMGYDTKTEVCGHGFRTMARGALSESKLWN  360
             +SG  E++FP+DHD+ KVMSENTVNSALR MGYDTKTEVCGHGFRTMARGAL+ES LW+
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDAIERQLSHVERKNVKGSYMHTSEYLEERRLMLQWWADYIDANKNGSITPYDFARV  417
            DDAIERQLSH ER+NV+++Y+HTSE L+ERRLM+QWWADY+D  +   ITPY++ARV
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

29) SG1638 in NC_007712


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  482 bits (1817),  Expect = 2e-137, Method: Compositional matrix adjust.
 Identities = 278/416 (67%), Positives = 355/416 (86%), Gaps = 0/416 (0%)

Query  1    MKLNPRQVQTAKAKEKSYKLSDGGGMYLEVTPRGSKYWRMKYHRPSDRKEDKLSFGVYPA  60
            MKLN+RQV+TAK+K+K+YK++DGGG+YLEV+++GSKYWRMKY+RPSD+KED+L+FGV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   ITlaearakrdeakkllakGLDPKKVQKKEHAENNGEFTFESIARKWHSNNRRWENVTRN  120
            +TLA+ARAKRDEAKKLL +G+DPK  QK  +AEN+G +TFE+IAR WH++N+RW +  R+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  LILNSLEKYVFPIIGKNDIRQLKTRHLLAVVRAVEENGKHEVAQRIQQRITSIMRYAVQN  180
             +L  LE Y+FP IG +DIRQLKT HLLA ++ V+ +GKH+VAQR+QQR+T+IMRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  EIIETNPALDMAGALIPPKSVHHPALAPIMLPQFFARLTSYKGRKITRIAVELNLLTFVR  240
            + I++NPA DMAGAL   K+ H PAL++  +P+F+ARL++Y+GR +TRIAVEL+LLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  SSELRFARWKEIDFEHALWEIPAKREPIAGVRYSERGMKMKSSHLVPLSKQAIELLKQLK  300
            SSELRFARW E+DF+ +LW +PAKRE I GVRYS RGMKMK  H+VPLS+QA+ LL QLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  VQRGDEAHIFPGDHDIKGVMSENTVNKALRVMGYDTKTEICGHGFRTMARGAMGESGLWA  360
               GD   +FPGDHD   VMSENTVN ALR MGYDTKTE+CGHGFRTMARGA+GESGLW+
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDVIELQMSHIERNGVKAAYLHTTKHLEERRLMMQWWADYLDANREHYISPYDFAK  416
            DD IE Q+SH ERN V+AAY+HT+ HL+ERRLM+QWWADYLD  + + I+PY++A+
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

30) plu4460 in NC_005126


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  478 bits (1800),  Expect = 4e-136, Method: Compositional matrix adjust.
 Identities = 297/416 (72%), Positives = 361/416 (87%), Gaps = 0/416 (0%)

Query  1    MKLNARQIEAAKPKDKAYKLADGGGLYLEITPRGSKYWRMKYRRPTDKKEDRLAFGVYPV  60
            MKLNARQ+E+AKPKDK+YK+ADGGGLYLE++++GSKYWRMKYRRP+DKKEDRLAFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   ISLADARAKRNEAKKLIANGIDPKATQKETQAEASGEFNFETIARKWHSSNKRWGDYNRA  120
            ++LA+ARAKR+EAKKL+ +GIDPK+ QKE+QAE SG + FETIAR WH+SNKRW++ +R+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  121  RVLRSLEQYIFPHIGKIDIRQLKTRELLVPIkavddadkvdvakRLQQCVTAIMRYAVQC  180
            RVLR LE YIFPHIG  DIRQLKT +LL PIK VD ++K DVA+RLQQ VTAIMRYAVQ 
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  181  GIIESNPALDMAGALSTTKTEHHpalppsrlpellerTALFKGREVTRIAIEFGLLTFVR  240
            + I+SNPA DMAGALSTTK+ H PALP+SR+PE+L R A ++GR +TRIA+E++LLTFVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  241  ASKLRFVRWDEFDFDNAIWEIPGKREAIENVKFSERGMKMKTPHIVPLSSQAMALLEKLK  300
            +S LRF RWDEFDFD+++W +P+KRE I  V++S RGMKMK  HIVPLS QAM LLE+LK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  301  EYSGDNRCLFPGDRDPNKVMSENTVNKALRVMGYDIKTEICYHGFRTMARGAMGESGIWA  360
            + SGD+  LFPGD+D+ KVMSENTVN ALR MGYD KTE+C HGFRTMARGA+GESG+W+
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  361  DDVIERQLSHLERNNVKAAYLHTSHHLDECRLMLQWWADYLDANRQGFISPYDYAQ  416
            DD IERQLSH ERNNV+AAY+HTS+HLDE RLM+QWWADYLD  +   I+PY+YA+
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

31) Ser39006_0951 in NC_022268


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  435 bits (1638),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 238/417 (58%), Positives = 330/417 (80%), Gaps = 3/417 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMFLLVHPNGSKYWRFRFR--FGGKQHLMAFGVYPE  58
            M L   +V +AKP +K Y + DG+G++L V ++GSKYWR ++R   + K++ +AFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQKREAARKLVAAGIDPREQKRAVQEEQAKAVFTFEFVAREWHATNKKWSEEHS  118
            V+LA+AR KR+ A+KL+  GIDP+ +++  Q E++ + +TFE +AREWHA+NK+WSE+H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  RRVLKSLEDNLFSAIGKRNVAELKTRDLLAPIKTVEQSGRLEVASRLQQRTTAIMRYAVQ  178
             RVL+ LE  +F+ IG  ++ +LKT +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVASSNRQHRPALELKRTPELLQRIDSYTGRPLTRLSVELTLLIFI  238
            ++ ID NPA +MAGA+++++ +H PAL   R PE+L R+ +Y GR +TR++VEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIEGVKHSHRGSKMRTPHLVPLSRQALVILKQI  298
            RSSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VPLSRQA+V+L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  QQVSGDHELIFIGDHNPRKPMSENTVNNALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            +Q+SGD EL+F GDH++ K MSENTVN+ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHMERNSVRAAYIHKAEHLDERRLMLQWWADFLDANREKGVSPFDFGK  415
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWAD+LD  +   ++P+++++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

32) D782_3965 in NC_020063


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  427 bits (1608),  Expect = 7e-121, Method: Compositional matrix adjust.
 Identities = 242/417 (59%), Positives = 328/417 (79%), Gaps = 2/417 (0%)

Query  1    MALTDIKVRTAKPMDKQYKLTDGNGMHLLVHPNGSKYWRLQYR--FDGKQKMLALGVYPD  58
            M L   +V TAKP DK YK++DG G+ L V ++GSKYWR++YR   D K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARTRREEARKLVANGIDPGDKKKNDKVEQEDARTFEQLAIEWHATNKKWSEEHSR  118
            V+LA+AR++R+EA+KL+ +GIDP   +K+ + E+ +A TFE +A EWHA+NK+WSE+H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLKSLEDNLFPAIGKRNITELKTRDLLAPIKVVELSGRLEVASRLQQRTTAIMRYAVQS  178
            RVL+ LE  +FP IG  +I +LKT +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLLDYNPAQEMVGAVASSNRQHRPALELKRTPELLQRIGSYTGRPLTRLAVELTLLVFIR  238
            + +D NPA +M GA+++++ +H PAL   R PE+L R+++Y GR +TR+AVEL+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFETSMWTIPAEREAIEGVKHSQRGSKMRTPHLVPLSRQALEILEQIK  298
            SSELRFARW E+DF+ S+W +PA RE I GV+ S RG KM+  H+VPLSRQA+ +LEQ+K
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TFSGDHELIFIGDHNPRKPMSENTVNKSLRVMGYDTQVEVCGHGFRTMACSSLIESGLWS  358
             +SGD EL+F GDH++ K MSENTVN +LR MGYDT+ EVCGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERLMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANREKAVSPFDFAKL  415
             DA+ER +SH ERN+VRAAYIH +EHLDER+LM+QWWAD+LD  +   ++P+++A++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

33) i14_4873a in NC_017652


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  425 bits (1599),  Expect = 3e-120, Method: Compositional matrix adjust.
 Identities = 245/417 (59%), Positives = 324/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPE  58
            M L   +V TAKP DK YK++DGGG+ L V ++GSKYWR++YR   + K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHSTNKKWSEDHAH  118
            +TLA+AR +RDEA+KLL +G+DP   +K+ + E+S A TF  +A EWH++NK+WSEDH  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS  178
            RVL+ LE  +F+ +G  +I +LKT +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIR  238
            + ID NPA +MAGA+++ + +H PAL   R+PE+L+++ +Y GR +TR A EL+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIK  298
            SSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VPLS QA+ +L Q+K
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  QFCGSHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWS  358
            Q+ G  +L+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYANV  415
             DA+ERQ+SH ERN+VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA V
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

34) i02_4873a in NC_017651


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  425 bits (1599),  Expect = 3e-120, Method: Compositional matrix adjust.
 Identities = 245/417 (59%), Positives = 324/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPE  58
            M L   +V TAKP DK YK++DGGG+ L V ++GSKYWR++YR   + K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHSTNKKWSEDHAH  118
            +TLA+AR +RDEA+KLL +G+DP   +K+ + E+S A TF  +A EWH++NK+WSEDH  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS  178
            RVL+ LE  +F+ +G  +I +LKT +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIR  238
            + ID NPA +MAGA+++ + +H PAL   R+PE+L+++ +Y GR +TR A EL+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIK  298
            SSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VPLS QA+ +L Q+K
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  QFCGSHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWS  358
            Q+ G  +L+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYANV  415
             DA+ERQ+SH ERN+VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA V
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

35) EcSMS35_4753 in NC_010498


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  424 bits (1598),  Expect = 4e-120, Method: Compositional matrix adjust.
 Identities = 244/417 (59%), Positives = 325/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDIKVRAAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPE  58
            M L   +V +AKP DK YK++DGGG+ L V ++GSKYWR++YR   + K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAH  118
            +TLA+AR +RDEA+KLL +G+DP   +K+ + E+S A TF  +A EWH++NK+WSEDH  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS  178
            RVL+ LE  +F+ +G  +I +LKT +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELSLLIFIR  238
            + ID NPA +MAGA+++ + +H PAL   R+PE+L+++ +Y GR +TR A ELSLL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIK  298
            SSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VPLS QA+ +L Q+K
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  QFCGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWS  358
            Q+ G  +L+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKI  415
             DA+ERQ+SH ERN+VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

36) APECO78_02320 in NC_020163


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  423 bits (1591),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 242/417 (59%), Positives = 327/417 (79%), Gaps = 2/417 (0%)

Query  1    MALTDIKVRAAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPE  58
            M L   +V +AKP DK YK++DGGG+ L V ++GSKYWR++YR   + K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ITLADARVRRDEARNLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAH  118
            +TLA+AR +RDEA++LL +G+DP   +K+ + E+S A TF  +A EWH++NK+WSEDH  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS  178
            RVL+ LE  +F+ +G  +I +LKT +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIR  238
            + ID NPA +MAGA+++ + +H PAL   R+PE+L+++ +Y GR +TR A+EL+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIK  298
            SSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VPLS QA+ +L Q+K
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  QFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWS  358
            Q+ G  +L+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKI  415
             DA+ERQ+SH ERN+VRAAYIH +EHL+ERRLM+QWWAD+LD+ +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

37) CE10_5017 in NC_017646


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  423 bits (1591),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 242/417 (59%), Positives = 327/417 (79%), Gaps = 2/417 (0%)

Query  1    MALTDIKVRAAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPE  58
            M L   +V +AKP DK YK++DGGG+ L V ++GSKYWR++YR   + K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ITLADARVRRDEARNLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAH  118
            +TLA+AR +RDEA++LL +G+DP   +K+ + E+S A TF  +A EWH++NK+WSEDH  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS  178
            RVL+ LE  +F+ +G  +I +LKT +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIR  238
            + ID NPA +MAGA+++ + +H PAL   R+PE+L+++ +Y GR +TR A+EL+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIK  298
            SSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VPLS QA+ +L Q+K
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  QFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWS  358
            Q+ G  +L+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKI  415
             DA+ERQ+SH ERN+VRAAYIH +EHL+ERRLM+QWWAD+LD+ +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

38) ECP_4521 in NC_008253


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  422 bits (1588),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 243/417 (59%), Positives = 325/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPE  58
            M L   +V TAKP DK YK++DGGG+ L V ++GSKYWR++YR   + K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWYGTNKKWSEDHAH  118
            +TLA+AR +RDEA+KLL +G+DP   +K+ + E+S A TF  +A EW ++NK+WSEDH  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS  178
            RVL+ LE  +F+ +G  +I +LKT +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIR  238
            + ID NPA +MAGA+++ + +H PAL   R+PE+L+++ +Y GR +TR A EL+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQIK  298
            SSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VPLSRQA+ +L Q+K
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  QFCGAHDLIFIGNHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWS  358
            Q+ G  +L+F G+HD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKI  415
             DA+ERQ+SH ERN+VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

39) ECABU_c48360 in NC_017631


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  422 bits (1589),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 243/417 (59%), Positives = 325/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPE  58
            M L   +V TAKP DK YK++DGGG+ L V ++GSKYWR++YR   + K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWYGTNKKWSEDHAH  118
            +TLA+AR +RDEA+KLL +G+DP   +K+ + E+S A TF  +A EW ++NK+WSEDH  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS  178
            RVL+ LE  +F+ +G  +I +LKT +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIR  238
            + ID NPA +MAGA+++ + +H PAL   R+PE+L+++ +Y GR +TR A EL+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQIK  298
            SSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VPLSRQA+ +L Q+K
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  QFCGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWS  358
            Q+ G  +L+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFDYAKI  415
             DA+ERQ+SH ERN+VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P++YA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

40) UM146_21610 in NC_017632


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  422 bits (1589),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 243/417 (59%), Positives = 325/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPE  58
            M L   +V TAKP DK YK++DGGG+ L V ++GSKYWR++YR   + K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWYGTNKKWSEDHAH  118
            +TLA+AR +RDEA+KLL +G+DP   +K+ + E+S A TF  +A EW ++NK+WSEDH  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS  178
            RVL+ LE  +F+ +G  +I +LKT +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIR  238
            + ID NPA +MAGA+++ + +H PAL   R+PE+L+++ +Y GR +TR A EL+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQIK  298
            SSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VPLSRQA+ +L Q+K
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  QFCGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWS  358
            Q+ G  +L+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFDYAKI  415
             DA+ERQ+SH ERN+VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P++YA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

41) intB in NC_007946


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  422 bits (1587),  Expect = 3e-119, Method: Compositional matrix adjust.
 Identities = 242/417 (59%), Positives = 324/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPE  58
            M L   +V TAKP DK YK++DGGG+ L V ++GSKYWR++YR   + K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ITLADARVRRDEARKLLANGVAPGDKKKNDKVEQSKARTFKEVAIEWYGTNKKWSEDHAH  118
            +TLA+AR +RDEA+KLL +G+ P   +K+ + E+S A TF  +A EW ++NK+WSEDH  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS  178
            RVL+ LE  +F+ +G  +I +LKT +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIR  238
            + ID NPA +MAGA+++ + +H PAL   R+PE+L+++ +Y GR +TR A EL+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQIK  298
            SSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VPLSRQA+ +L Q+K
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  QFCGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWS  358
            Q+ G  +L+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFDYAKI  415
             DA+ERQ+SH ERN+VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P++YA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

42) H650_18245 in NC_021500


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  421 bits (1586),  Expect = 3e-119, Method: Compositional matrix adjust.
 Identities = 231/417 (56%), Positives = 325/417 (78%), Gaps = 3/417 (0%)

Query  1    MALTDTKVRSAKPEVKEYSLVDGDGMFLLIHPNGSIYWRFRFRFGG--KQHLMAFGVYPE  58
            M L   +V +AKP  K Y + DG+G++L + ++GS YWR ++R  +  K++ +AFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   TSLADARQKREEARKLVAAGVDPREHKRAVKEEQAKEVITFESVARDWHASNQKWSESHS  118
             +LA+AR KR+EA+KL+  G+DP+ +++  + E++    TFE++AR+WHASN++WSE H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  GRVLKSLEDNLFDAIGKRNIAELKTRDLLIPIKAVEMSGRLEVAARLQQRTTAIMRFAVQ  178
            +RVL+ LE  +F  IG  +I +LKT +LL PIK V+ SG+ +VA RLQQR TAIMR+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDTYTGRPLTRLAVELTLLVFI  238
            ++ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+ +Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFEIAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSSQALTILEKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H+VPLS QA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SKDAVERQMSHQERNSVRAAYIHKAEHLGERRLMVQWWADYLDVNREKGISPFDFGK  415
            S DA+ERQ+SH ERN+VRAAYIH +EHL+ERRLMVQWWADYLD+ +   I+P+++++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

43) KO11_23100 in NC_017660


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  421 bits (1584),  Expect = 5e-119, Method: Compositional matrix adjust.
 Identities = 237/418 (57%), Positives = 327/418 (79%), Gaps = 3/418 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V +AKP  K+YK++DG G+ L V ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLVDARGRRDEARKLLANGVDPSENKKAVKVEHEQEVITFEVVAREWHASNQKWSASHS  118
            V+L +AR++RDEA+KLL +G+DP  ++K  + E+     TFE +AREWHASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQHTTAIIRFAVQ  178
            +RVL+ LE  +F+ IG  +I +LKT +LL PIK V++SG+ +VA RLQQ+ TAI+R+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLQRIYHYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFDTAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALTILEKI  298
            RSSELRFARW E DFD ++W +P+ RE + GV+ S RG KM+  H+VPLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFVGDHDPRKPMSENTLNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENT+N ALR MGYDTKTEVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERSSVRAAYIHKAEHLGERMLMLQWWADYLDANRMAAITPFDYAKI  416
            S DA+ERQ+SH ER++VRAAYIH +EHL+ER LM+QWWADYLD  +   ITP++YA++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

44) EKO11_4021 in NC_016902


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  421 bits (1584),  Expect = 5e-119, Method: Compositional matrix adjust.
 Identities = 237/418 (57%), Positives = 327/418 (79%), Gaps = 3/418 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V +AKP  K+YK++DG G+ L V ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLVDARGRRDEARKLLANGVDPSENKKAVKVEHEQEVITFEVVAREWHASNQKWSASHS  118
            V+L +AR++RDEA+KLL +G+DP  ++K  + E+     TFE +AREWHASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQHTTAIIRFAVQ  178
            +RVL+ LE  +F+ IG  +I +LKT +LL PIK V++SG+ +VA RLQQ+ TAI+R+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLQRIYHYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFDTAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALTILEKI  298
            RSSELRFARW E DFD ++W +P+ RE + GV+ S RG KM+  H+VPLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFVGDHDPRKPMSENTLNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENT+N ALR MGYDTKTEVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERSSVRAAYIHKAEHLGERMLMLQWWADYLDANRMAAITPFDYAKI  416
            S DA+ERQ+SH ER++VRAAYIH +EHL+ER LM+QWWADYLD  +   ITP++YA++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

45) LY180_22530 in NC_022364


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  421 bits (1584),  Expect = 5e-119, Method: Compositional matrix adjust.
 Identities = 237/418 (57%), Positives = 327/418 (79%), Gaps = 3/418 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V +AKP  K+YK++DG G+ L V ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLVDARGRRDEARKLLANGVDPSENKKAVKVEHEQEVITFEVVAREWHASNQKWSASHS  118
            V+L +AR++RDEA+KLL +G+DP  ++K  + E+     TFE +AREWHASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQHTTAIIRFAVQ  178
            +RVL+ LE  +F+ IG  +I +LKT +LL PIK V++SG+ +VA RLQQ+ TAI+R+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLQRIYHYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFDTAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALTILEKI  298
            RSSELRFARW E DFD ++W +P+ RE + GV+ S RG KM+  H+VPLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFVGDHDPRKPMSENTLNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENT+N ALR MGYDTKTEVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERSSVRAAYIHKAEHLGERMLMLQWWADYLDANRMAAITPFDYAKI  416
            S DA+ERQ+SH ER++VRAAYIH +EHL+ER LM+QWWADYLD  +   ITP++YA++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

46) ECW_m4652 in NC_017635


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  421 bits (1584),  Expect = 5e-119, Method: Compositional matrix adjust.
 Identities = 237/418 (57%), Positives = 327/418 (79%), Gaps = 3/418 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V +AKP  K+YK++DG G+ L V ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLVDARGRRDEARKLLANGVDPSENKKAVKVEHEQEVITFEVVAREWHASNQKWSASHS  118
            V+L +AR++RDEA+KLL +G+DP  ++K  + E+     TFE +AREWHASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQHTTAIIRFAVQ  178
            +RVL+ LE  +F+ IG  +I +LKT +LL PIK V++SG+ +VA RLQQ+ TAI+R+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLQRIYHYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFDTAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALTILEKI  298
            RSSELRFARW E DFD ++W +P+ RE + GV+ S RG KM+  H+VPLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFVGDHDPRKPMSENTLNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENT+N ALR MGYDTKTEVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERSSVRAAYIHKAEHLGERMLMLQWWADYLDANRMAAITPFDYAKI  416
            S DA+ERQ+SH ER++VRAAYIH +EHL+ER LM+QWWADYLD  +   ITP++YA++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

47) WFL_22655 in NC_017664


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  421 bits (1584),  Expect = 5e-119, Method: Compositional matrix adjust.
 Identities = 237/418 (57%), Positives = 327/418 (79%), Gaps = 3/418 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V +AKP  K+YK++DG G+ L V ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLVDARGRRDEARKLLANGVDPSENKKAVKVEHEQEVITFEVVAREWHASNQKWSASHS  118
            V+L +AR++RDEA+KLL +G+DP  ++K  + E+     TFE +AREWHASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQHTTAIIRFAVQ  178
            +RVL+ LE  +F+ IG  +I +LKT +LL PIK V++SG+ +VA RLQQ+ TAI+R+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLQRIYHYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFDTAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALTILEKI  298
            RSSELRFARW E DFD ++W +P+ RE + GV+ S RG KM+  H+VPLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFVGDHDPRKPMSENTLNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENT+N ALR MGYDTKTEVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERSSVRAAYIHKAEHLGERMLMLQWWADYLDANRMAAITPFDYAKI  416
            S DA+ERQ+SH ER++VRAAYIH +EHL+ER LM+QWWADYLD  +   ITP++YA++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

48) CFSAN001992_11535 in NC_020307


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  420 bits (1582),  Expect = 7e-119, Method: Compositional matrix adjust.
 Identities = 236/417 (57%), Positives = 329/417 (79%), Gaps = 3/417 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V +AKP  K+YK++DG+G+ L V ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARSRRDEARKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHS  118
            V+LA+AR++RDEA+KLL +G+DP  ++K  + E +  A TFE +AR+WHASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFAAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
            +RVL+ LE  +F+ IG  +I +LKT +LL PIK V++SG+ +VA RLQQR TAIMR+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLYRIDHYSGRPLTRFAVELMLLVFI  238
            ++ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+  Y GR +TR+AVEL LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWTEVDFETAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALAILEKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H+VPLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMNGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLW  358
            K ++G++EL+F GDHD+ K MSENTVN ALR MGYDTKTEVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERSSVRAAYIHKAEHLGERRLMLQWWADYLDANREIGVSPFDFGK  415
            S DA+ERQ+SH ER++VRAAYIH +EHL+ERRLM+QWWADYLD  +   ++P+++++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

49) EC042_4741 in NC_017626


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  420 bits (1580),  Expect = 9e-119, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 326/417 (79%), Gaps = 3/417 (0%)

Query  1    MALTDIKVRSAKPQEKEYTLADGDGMFLLIHPNGSKYWRFRFR--FGGKQHLMAFGVYPE  58
            M L   +V +AKP++K Y +ADG+G++L + ++GSKYWR ++R   + K++ +AFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   TSLADARQKREEARKLVAAGIDPREHKRAVKEEQTKEAITFESVAREWHAVNKKWTEEHS  118
             +LA+AR KR+EA+KL+  GIDP+ +++  + E++  A TFE++AREWHA NK+W+E+H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  RRVLKSLEDNLFPAIGKRSIDSFSTRDLLVPIKVVEATGRLEVASRLQQRTNAIMRCAVQ  178
             RVL+ LE  +FP IG   I  + T +LL PIK V+A+G+ +VA RLQQR  AIMR AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVASSNRVHRPALELKRLPELLQRIDSYSGRPLTRLAVELTLLIFI  238
            ++ ID NPA +MAGA+++++  H PAL   R+PE+L R+ +Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWPEIDFERAMWTIPAEREAIEGVKHSERGSKMRTPHLVPLSRQALAILKQV  298
            RSSELRFARW E+DF++++W +PA RE I GV+ S RG KM+  H+VPLSRQA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  HKLSGERDFVFVGDHNPCKPMSENTVNKALRVMGYDTKIEVCGHGFRTMACSSLIESGLW  358
             ++SG+++++F GDH++ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRNAVERQMSHMERNSVRAAYIHKAQHLDERKMMLQWWADFLDVNRVKGVSPFDFAK  415
            S +A+ERQ+SH ERN+VRAAYIH ++HLDER++M+QWWAD+LD+ +   ++P+++A+
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

50) ECA2879 in NC_004547


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  419 bits (1578),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 235/417 (57%), Positives = 326/417 (79%), Gaps = 3/417 (0%)

Query  1    MALTDIKVRSAKPEEKPYKLTDGNGMFLLVHTNGSKYWRLRYR--SDGKEKTLALGVYPE  58
            M L   +V +AKP +K YK++DG G++L V ++GSKYWR++YR  SD KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARQKRDEARKLISAGVDPNEHKKAVKTQQQDDEQTFEAVARAWHTDNKKWSESHA  118
            V+L++AR KRDEA+KL+  G+DP+ ++K  ++++  +  TFE++AR WH+ NK+WSE H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN-SGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ERILKSLSDNIFPAIGGTHVANLKTRDLLTPIKSVERSGRLEVAKRLKQRVTAIMTYAVQ  178
             R+L+ L   IFP IG++++ +LKT +LL+PIK V+ SG+ +VA+RL+QRVTAIM YAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  NGLIDYNPAQDMAGAIMPGKVEHRPALELDRLPELLGRIDGYKGREFTKWVINLSLLIFI  238
            N+ ID NPA DMAGA+   K  H PAL   R+PE+L+R+ +Y+GR  T+  ++LSLL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWPEIDFERSLWTIPPEREPIPGVKFSERGSKMHTPHLVPLSRQALEILKKI  298
            RSSELRFARW E+DF++SLW +P+ RE I GV++S RG KM   H+VPLSRQA+ +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  REVSGHCELVFIGDHSSRKPVSEGTVNKALQTMGYDTKTEVCGHGFRTMACSSLIESGLW  358
            +++SG+ EL+F GDH + K +SE TVN AL++MGYDTKTEVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNGVRAAYIHKAEHLDERRLMLQWWADFLDANRERAISAFDFAK  415
            S DA+ERQ+SH ERN VRAAYIH +EHLDERRLM+QWWAD+LD  +   I+++++A+
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

51) Entcl_3878 in NC_014618


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  418 bits (1572),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 326/417 (79%), Gaps = 3/417 (0%)

Query  1    MALTDIKVRSAKPQEKEYTLVDGDGMFLLIHPNGSKYWRFRFR--FGGKQHLMAFGVYPE  58
            M L   +V +AKP++K Y + DG+G++L + ++GSKYWR ++R   + K++ +AFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   TSLADARQKREEARKLVAAGIDPREHKRAVKEQQAKENITFESVAREWHAANKKWSEEHS  118
             +LA+AR KR+EA+KL+  GIDP+ +++  + +++    TFE++AREWHA+NK+WSE+H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  RRVLKSLEDNLFPAIGKRSIDSFSTRDLLVPIKVVEATGRLEVASRLQQRTNAIMRYAVQ  178
             RVL+ LE  +FP IG   I  + T +LL PIK V+A+G+ +VA RLQQR  AIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVASSNRVHRPALELKRLPELLHRIDSYTGRPLTRLAVELTLLIFI  238
            ++ ID NPA +MAGA+++++  H PAL   R+PE+L R+ +Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFERAMWTIPAEREAIEDVKHSQRGSKMRTPHLVPLSRQALAILKQV  298
            RSSELRFARW E+DF++++W +PA RE I +V+ S RG KM+  H+VPLSRQA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  HKLSGERDFVFIGDHNPLKPMSENTVNKALRVMGYDTKVDVCGHGFRAMACSSLIESGLW  358
             ++SG+++++F GDH++ K MSENTVN ALR MGYDTK +VCGHGFR+MA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHMERNSVRAAYIHKAEHLDERRLMLQWWADLLDVNREREVSPYDFGK  415
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWAD LD+ +  +++PY++++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

52) CFSAN002050_22445 in NC_021818


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  417 bits (1571),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 234/420 (56%), Positives = 312/420 (75%), Gaps = 2/420 (0%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWQLKYR--FGGKEKKLAFGAYPT  58
            M L    +  AKP DK YK++D+ GLYL + ++GSK W++KYR   + KE +LAFG  PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLANARKLREEARAVLSTGDDPGVKKQQEKQAKKSGNTFEEVARKWLAGNIRWTEAHAA  118
            VTLA+AR  R+EA+ +L  G DP   +++ +  + ++ TFE +AR W A+N RW+E H +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KALRSLELHVFPLIGKIPVTDLKTADLLIPLRVAERKGNLETAARIQQRTTAIMRYAVQE  178
            + LR LEL +FP IG   + +LKT++LL P++  +  G+ + A R+QQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  SLIASNPANDLTGAIAPPPKNHYPALPLEKMPELLERLEGYSGRLLTRLAVQLNLLIFIR  238
              I SNPA+D++GA++     HYPALP  + PE+L RL +Y GR++TR+AV+L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWAEIDLDGAMWTIPAGREPIPGVRYSERGAKMKTPHLVPLSKQAVTVLKQLK  298
            SSELRFARW E+D+D ++W +PA RE I GVRYS RG KMK  H+VPLS+QA+ +L QLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  LLSGNSELLFPGDHDPRKPMSENTINKALRVMGYDTKVDVCGHGFRTMACSALIESGRWS  358
             +SG+ ELLFPGDHD+ K MSENT+N ALR MGYDTK +VCGHGFRTMA +AL ESG WS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  KDAVERQMSHQERNNVRAAYIHKAEHLDERTQMMQWWSDYLDACRQKFVAPYRYDRQVQV  418
             DA+ERQ+SH ERNNVRAAYIH +EHLDER  M+QWW+DYLD  +   ++PY Y R  ++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCNI  420

53) S70_06120 in NC_017731


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  417 bits (1570),  Expect = 6e-118, Method: Compositional matrix adjust.
 Identities = 230/417 (56%), Positives = 328/417 (79%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPDVKSYKLTDGAGLHLLVHSNGSKYWRLRYRHLG--KEKTLALGLYPD  58
            M L   ++ +AKP  K+YK++DG+GL L V ++GSKYWR++YR+ +  KE  LA+G+ P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARLKRDEARKLIADGIDPCEQKRVAKAASDANLSFETIARQWHASNKKWSESHSE  118
            V+L++AR KRDEA+KL+ +GIDP  +++ A+A + +  +FETIAR+WHASNK+WSE H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLESHVFPYIGLRDITTLKTPDLLIPIRAAESKEIYEIAARLQQRIAAVMRYAVQS  178
            +VL+ LE  +FP IG  DI  LKT++LL PI+  ++    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIGYNPAIDTAGAVTTVQRQHRPALNLDRLPELITRIDAYKGQPVTRLAVMLNLLVFIR  238
            + I+ NPA D AGA++T + +H PAL   R+PE+++R+ AY+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDFDKALWTIPAQRKPIPGVKFSHRGAKMRTPHLVPLSHQAITILKEIW  298
            SSELR+ARW E+DFDK+LW +PA+R  I GV++S RG KM+  H+VPLS+QA+ +L ++ 
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  AWTGEHELILTGAHNPFKPMSENTVNKALRVMGYDTKTEICGHGFRTMACSSLVESGLWS  358
              +G+ EL++ G H++ K MSENTVN ALR MGYDTKTE+CGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  KDAVERQMSHQERNSVRAAYIHKAEHIDQRRLMVQWWADYLDANREQTISPFDFAKL  415
             DA+ERQ+SH ERN+VRAAYIH +EH+D+RRLMVQWWADYLD  + + I+P+++A++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

54) KO11_22995 in NC_017660


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  417 bits (1569),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 238/418 (57%), Positives = 323/418 (78%), Gaps = 3/418 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGG--KQHLMAFGVYPD  58
            M L   +V +AKP +K Y + DG+G+ L V + GSKYWR ++R  +  K++ +AFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHA  118
            V+LA+AR KR+EA+KL+  GIDP+ +++  + E++    TFE +AREW  +N++WSEDH 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  NRVKKSLEDNIFPAIGTRNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  178
            +RV + LE  IFP IG+ +I +L T +LL PIK V+ SG+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFI  238
            ++ ID NPA +MAGA+++++ +H PAL   R+PE+L ++ +Y GR +TR A EL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKYSQRGSKMRTPHLVPLSKQALAILKQI  298
            RSSELRFARW E+DF+ S+W +P+ RE I GV+YS RG KM+  H+VPLS+QA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            KQ+ G+ EL+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SKDAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANRERAITPFDYAKI  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDER+LM+QWWAD+LD  +   ITP++YA++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

55) EKO11_4043 in NC_016902


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  417 bits (1569),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 238/418 (57%), Positives = 323/418 (78%), Gaps = 3/418 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGG--KQHLMAFGVYPD  58
            M L   +V +AKP +K Y + DG+G+ L V + GSKYWR ++R  +  K++ +AFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHA  118
            V+LA+AR KR+EA+KL+  GIDP+ +++  + E++    TFE +AREW  +N++WSEDH 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  NRVKKSLEDNIFPAIGTRNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  178
            +RV + LE  IFP IG+ +I +L T +LL PIK V+ SG+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFI  238
            ++ ID NPA +MAGA+++++ +H PAL   R+PE+L ++ +Y GR +TR A EL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKYSQRGSKMRTPHLVPLSKQALAILKQI  298
            RSSELRFARW E+DF+ S+W +P+ RE I GV+YS RG KM+  H+VPLS+QA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            KQ+ G+ EL+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SKDAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANRERAITPFDYAKI  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDER+LM+QWWAD+LD  +   ITP++YA++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

56) LY180_22420 in NC_022364


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  417 bits (1569),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 238/418 (57%), Positives = 323/418 (78%), Gaps = 3/418 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGG--KQHLMAFGVYPD  58
            M L   +V +AKP +K Y + DG+G+ L V + GSKYWR ++R  +  K++ +AFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHA  118
            V+LA+AR KR+EA+KL+  GIDP+ +++  + E++    TFE +AREW  +N++WSEDH 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  NRVKKSLEDNIFPAIGTRNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  178
            +RV + LE  IFP IG+ +I +L T +LL PIK V+ SG+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFI  238
            ++ ID NPA +MAGA+++++ +H PAL   R+PE+L ++ +Y GR +TR A EL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKYSQRGSKMRTPHLVPLSKQALAILKQI  298
            RSSELRFARW E+DF+ S+W +P+ RE I GV+YS RG KM+  H+VPLS+QA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            KQ+ G+ EL+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SKDAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANRERAITPFDYAKI  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDER+LM+QWWAD+LD  +   ITP++YA++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

57) WFL_22550 in NC_017664


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  417 bits (1569),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 238/418 (57%), Positives = 323/418 (78%), Gaps = 3/418 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGG--KQHLMAFGVYPD  58
            M L   +V +AKP +K Y + DG+G+ L V + GSKYWR ++R  +  K++ +AFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHA  118
            V+LA+AR KR+EA+KL+  GIDP+ +++  + E++    TFE +AREW  +N++WSEDH 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  NRVKKSLEDNIFPAIGTRNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  178
            +RV + LE  IFP IG+ +I +L T +LL PIK V+ SG+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFI  238
            ++ ID NPA +MAGA+++++ +H PAL   R+PE+L ++ +Y GR +TR A EL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKYSQRGSKMRTPHLVPLSKQALAILKQI  298
            RSSELRFARW E+DF+ S+W +P+ RE I GV+YS RG KM+  H+VPLS+QA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            KQ+ G+ EL+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SKDAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANRERAITPFDYAKI  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDER+LM+QWWAD+LD  +   ITP++YA++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

58) S70_13465 in NC_017731


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  417 bits (1569),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 231/417 (56%), Positives = 327/417 (79%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPDVKSYKLTDGAGLHLLVHTNGSKYWRLRYRHLG--KEKTLALGLYPD  58
            M L   ++ +AKP  K+YK++DG+GL L V ++GSKYWR++YR+ +  KE  LA+G+ P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARLKRDEARKLIADGIDPCEQKRVAKAASDANLSFETIARQWHASNKKWSESHSE  118
            V+L++AR KRDEA+KL+ +GIDP  +++ A+A + +  +FETIAR+WHASNK+WSE H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLESHVFPYIGLRDITTLKTPDLLIPIRAAESKEIYEIAARLQQRIAAVMRYAVQS  178
            +VL+ LE  +FP IG  DI  LKT++LL PI+  ++    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIGYNPAIDTAGAVTTVQRQHRPALNLDRLPELIARIDAYKGQPVTRLAVMLNLLVFIR  238
            + I+ NPA D AGA++T + +H PAL   R+PE++AR+ AY+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDFDKALWTIPAERKPIPGVKFSHRGAKMRTPHLVPLSHQAITILKEIW  298
            SSELR+ARW E+DFDK+LW +PA R  I GV++S RG KM+  H+VPLS+QA+ +L ++ 
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  AWTGEHELILTGAHNPFKPMSENTVNKALRVMGYDTKTEICGHGFRTMACSSLVESGLWS  358
              +G+ EL++ G H++ K MSENTVN ALR MGYDTKTE+CGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  KDAVERQMSHQERNSVRAAYIHKAEHIDQRRLMVQWWADYLDANREQTISPFDFAKL  415
             DA+ERQ+SH ERN+VRAAYIH +EH+D+RRLMVQWWADYLD  + + I+P+++A++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

59) SARI_03312 in NC_010067


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  417 bits (1568),  Expect = 8e-118, Method: Compositional matrix adjust.
 Identities = 232/420 (56%), Positives = 316/420 (76%), Gaps = 2/420 (0%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYR--FGGKEKKLAFGAYPT  58
            M L    +  AKP DK YK++D+ GLYL + ++GSK W++KYR   + KE +LAFG  PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLANARKLREEARAVLSAGDDPGVKKQQEKQAKKSGNTFEEVARRWLAGNIRWTEHHAA  118
            VTLA+AR  R+EA+ +L  G DP   +++ +  + ++ TFE +AR W A+N RW+E+H +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KILRSLELHVFPLIGNIPVADLKTADLLIPLRVAEKKGNLETAARSQQRTTAIMRYAVQE  178
            ++LR LEL +FP IG+  + +LKT++LL P++  +  G+ + A R QQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  SLIASNPANDLTGAIAPPPKNHYPALPLEQIPQLLERLEGYSGRLLTRLAVQLNLLIFIR  238
              I SNPA+D++GA++     HYPALP  ++P++L RL +Y GR++TR+AV+L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWTEIDLDGAMWTIPTQRESIPGVRYSERGAKMKTPHLVPLSKQAVTVLKQLK  298
            SSELRFARW E+D+D ++W +P++RE I GVRYS RG KMK  H+VPLS+QA+ +L QLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  LLSGNSELLFPGDHDPRKPMSENTINKALRVMGYDTKVDVCGHGFRTMACSALIESGRWS  358
             +SG+ ELLFPGDHD+ K MSENT+N ALR MGYDTK +VCGHGFRTMA +AL ESG WS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  KDAVERQMSHQERNNVRAAYIHKAEHLDERTQMMQWWSDYLDACRQKFVAPYRYDRQVQV  418
             DA+ERQ+SH ERNNVRAAYIH +EHLDER  M+QWW+DYLD  +   ++PY Y R  ++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCNI  420

60) A225_0566 in NC_018106


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  416 bits (1565),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 235/418 (57%), Positives = 324/418 (78%), Gaps = 3/418 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPNGSKYWRFRFRFGG--KQHLMAFGVYPE  58
            M L   +V +AKP +K Y + DG+G+ L V ++GSKYWR ++R  +  K++ +AFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLANARKKREEARKLVAAGIDPREHKRALKEEQAKEIITFEKVAREWLATNQKWSEDHA  118
            ++LA+AR KR+EA+KL+  GIDP+ +++  + E++    TFE +AREW A+N++WSEDH 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  NRVKKSLEDNIFPAIGTCNIAELGTRDLLAPIKAVEVSGRLEVASRLQQRTTAIMRYAVQ  178
            +RV + LE  IFP IG+ +I +L T +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVASGNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFI  238
            ++ ID NPA +MAGA+++ + +H PAL   R+PE+L ++ +Y GR +TR A EL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPLSKQALAILKQI  298
            RSSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VPLS+QA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            KQ+ G+ EL+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SKDAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWANFLDANREKSISPFDFAKI  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDER+LM+QWWA++LD  +   I+P+++A++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

61) ECABU_c32560 in NC_017631


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L T++LL P++  +     ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++SYRG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKV  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  + E I+P+EYA+V
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

62) int in NC_008563


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L T++LL P++  +     ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++SYRG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKV  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  + E I+P+EYA+V
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

63) i14_3273 in NC_017652


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L T++LL P++  +     ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++SYRG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKV  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  + E I+P+EYA+V
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

64) i02_3273 in NC_017651


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L T++LL P++  +     ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++SYRG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKV  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  + E I+P+EYA+V
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

65) int in NC_017644


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L T++LL P++  +     ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++SYRG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKV  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  + E I+P+EYA+V
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

66) CE10_3417 in NC_017646


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L T++LL P++  +     ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++SYRG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKV  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  + E I+P+EYA+V
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

67) ECS88_4720 in NC_011742


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L T++LL P++  +     ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++SYRG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKV  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  + E I+P+EYA+V
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

68) SbBS512_E4814 in NC_010658


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  414 bits (1560),  Expect = 4e-117, Method: Compositional matrix adjust.
 Identities = 237/418 (57%), Positives = 321/418 (77%), Gaps = 3/418 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGG--KQHLMAFGVYPD  58
            M L   +V +AKP +K Y + DG+G+ L V + GSKYWR ++R  +  K++ +AFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEEHA  118
            V+LA+AR KR+EA+KL+  GIDP+ +++  + E++    TFE +AREW  +N++WSE+H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  NRVKKSLEDNIFPAIGSHNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  178
            +RV + LE  IFP IGS +I +L T +LL PIK V+ SG+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLQKIDEYTGRPLTRWATELTLLIFI  238
            ++ ID NPA +MAGA+++ + +H PAL   R+PE+L ++  Y GR +TR A EL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGAKMRTPHLVPLSKQALAILKQI  298
            RSSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VPLS+QA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KQFCGEHELIFIGDHDPSKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            KQ+ G+ EL+F GDHD++K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SKDAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANREKGITPFDYAKI  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDER+LM+QWWAD+LD  +   ITP++YA++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

69) ETAC_14745 in NC_020796


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  414 bits (1558),  Expect = 6e-117, Method: Compositional matrix adjust.
 Identities = 239/418 (58%), Positives = 330/418 (79%), Gaps = 3/418 (0%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLVNPNGSKYWRLQYR--FNGKQKILALGVYPT  58
            M L   +V T+KP DK +K++DG G+ L V+++GSKYWR++YR   + K+  LA+GV PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLGEARRKRDEAKKLVSDGIDPSEKKKADKIEQSEALTFESVARDWHTACKRKWSDSHS  118
            V+L++AR KRDEAKKL+ +GIDP   +K  + E+S A TFE++AR+WH++ KR WS+ H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKR-WSEDHR  119

Query  119  ERVLKSMEDGLFTAIGRRKISELNTRDLLAPIKAVEASGRLEVAARLQQRTTAVMRYAVQ  178
             RVL+ +E  +F  IG   I +L+T +LLAPIK V+ASG+ +VA RLQQR TA+MRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  NGLIDYNPAQEMAGAIAVAKRVHRPALPFERFSELLERIDSFKGRkltklavkltllIFI  238
            N+ ID NPA +MAGA++ +K  H PALP  RF+E+L R+ +++GR +T++AV L+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFDNAMWTIPGEREPLPGVKHSHRGSKMKTPHLVPLSRQALELLKAI  298
            RSSELRFARW E+DFD+++W +P+ RE + GV+ S RG KMK  H+VPLSRQA+ LL  +
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  REISGECDLVFIGDHDFRKPMSENTVNKALRSMGYDTTAEVCGHGFRAMACSALIESGLW  358
            ++ISG+ +L+F GDHD  K MSENTVN ALR+MGYDT +EVCGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SKDAVERQMSHQERNSVRAAYIHKAEHIDERKLMLQWWADYLDLLRIRQVSPFDFKRI  416
            S DA+ERQ+SH ERN+VRAAYIH +EH+DER+LM+QWWADYLD+++  +++P+++ R+
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

70) EcolC_0747 in NC_010468


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  414 bits (1557),  Expect = 7e-117, Method: Compositional matrix adjust.
 Identities = 225/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGLPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G  +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++SYRG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREQCISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  + + I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

71) EcolC_3878 in NC_010468


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  413 bits (1553),  Expect = 1e-116, Method: Compositional matrix adjust.
 Identities = 223/417 (54%), Positives = 325/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLRTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVTLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRGMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR+MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

72) ECED1_3430 in NC_011745


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  413 bits (1554),  Expect = 1e-116, Method: Compositional matrix adjust.
 Identities = 224/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKHTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AK  DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++SYRG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREQCISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  + + I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

73) ECUMN_3322 in NC_011751


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  413 bits (1553),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 226/417 (55%), Positives = 322/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L T++LL P++  +     ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAELEPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA  E + GV++SYRG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKV  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  + E I+P+EYA+V
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

74) intB in NC_016514


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  412 bits (1550),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 241/418 (58%), Positives = 326/418 (78%), Gaps = 2/418 (0%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGNGMHLLVHPNGSKYWRLQYRFGG--KQKMLALGVYPD  58
            M L   +V TAKP DK YK++DG G+ L V ++GSKYWR++YR  +  K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrddarKLLANSIDPGDKKKNDKVEQEEARTFEQLAIEWHATNKKWTEEHSR  118
            V+LA+ARA+RD+A+KLL ++IDP   +K+ + E+  A TFE +A EWHA+NK+W+E+H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVEMSGRLEVASRLQQRTTAIMRYAVQS  178
            RVL+ LE  +FP IG  +I +LKT +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLLDYNPAQEMAGAVASSNRQHRPALELRRTPELLQRIDSYTGRPLTRLAIELTLLVFIR  238
            + +D NPA +MAGA+++++ +H PAL   R PE+L R+ +Y GR +TR+A+EL+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFETSMWTIPAEREAIEGIKHSQRGSKMHTPHLVPLSRQALAILKQVH  298
            SSELRFARW E+DF+ S+W +PA RE I G++ S RG KM   H+VPLSRQA+ +L Q+ 
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  KLSGDRDFVFIGDHDHRKPMSENTVNKALRVMGYDTKIEVCGHGFRTMACSSLIESGLWS  358
            ++SGD++++F GDHD  K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHMERNSVRAAYIHKAEHLDERRLMLQWWADFLDANREKAVSPFDFAKLS  416
             DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWAD+LD  +   ++P+++A++ 
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVC  418

75) ROD_50201 in NC_013716


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  412 bits (1551),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 223/417 (54%), Positives = 322/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTIKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLNANREKCISPFDYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+L+  +   I+P++YA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

76) c3556 in NC_004431


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  412 bits (1551),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 225/417 (54%), Positives = 321/417 (77%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L T++LL P++  +     ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRINSYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAERKPLPGVKFSHRGSKMRTPHLVPLSQQAVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA R  + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKV  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  + E I+P+EYA+V
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

77) c5216 in NC_004431


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  412 bits (1550),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 224/417 (54%), Positives = 324/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

78) ECO26_4069 in NC_013361


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  412 bits (1551),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 225/417 (54%), Positives = 322/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYANV  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA V
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

79) EC042_4610 in NC_017626


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  412 bits (1549),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 226/417 (55%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

80) int in NC_011748


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  412 bits (1549),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 226/417 (55%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

81) int in NC_011750


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  412 bits (1550),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 226/417 (55%), Positives = 324/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPISKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VP+S+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKV  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  + E I+P+EYA+V
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

82) O3M_04655 in NC_018650


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  412 bits (1549),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 226/417 (55%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

83) O3O_21040 in NC_018661


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  412 bits (1549),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 226/417 (55%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

84) O3K_04610 in NC_018658


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  412 bits (1549),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 226/417 (55%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

85) UMNK88_3667 in NC_017641


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  412 bits (1549),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 226/417 (55%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

86) EcE24377A_3314 in NC_009801


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  411 bits (1548),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 225/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLIHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L + ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

87) PAGR_g3659 in NC_017554


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  411 bits (1548),  Expect = 4e-116, Method: Compositional matrix adjust.
 Identities = 242/417 (59%), Positives = 329/417 (79%), Gaps = 3/417 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V +AKP  K+YK++DG+G+ L V ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrdearKLLANGVDPSENKKAAKVEQEQEAITFEVVAREWHASNQKWSASHS  118
            V+LA+ARA+RDEA+KLL +G+DP  ++K A+ E +  A TFE +AREWHASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFDAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
            +RVL+ LE  +F  IG  +I +LKT +LL PIK V++SG+ +VA RLQQR TAIMR+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWTEVDFETAMWTIPGEREPLEGVKHSQRGSKMKTPHLVPLSRQAVAILEKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KMK  H+VPLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMNGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKTEVCGHGVRTMACSSLIESGLW  358
            K ++G++EL+F GDHD+ K MSENTVN ALR MGYDTKTEVCGHG RTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMLQWWADYLDANRVKGISPFDFSK  415
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWADYLD  +   I+P+++++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

88) int in NC_011745


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  411 bits (1547),  Expect = 4e-116, Method: Compositional matrix adjust.
 Identities = 222/417 (54%), Positives = 324/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SNELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            S+ELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRDKGISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

89) CFSAN002050_05850 in NC_021818


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  411 bits (1546),  Expect = 5e-116, Method: Compositional matrix adjust.
 Identities = 234/418 (56%), Positives = 324/418 (78%), Gaps = 3/418 (0%)

Query  1    MALTDTKVRSAKPEDNANPLSDGDGLFLLVHANGSKYWRFRFRFGG--KQHVMAFGVYPE  58
            M L   +V +AKP D++  ++DG+GL+L V A+GSKYWR ++R  +  K++ +AFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARKKREEARKLVAAGIDPRAHKRAVKEEQAKEIITFEKVARDWLATNQKWSEDHA  118
            V+LA+AR KR+EA+KL+  GIDP+++++  + E++    TFE +AR+W A+N++WSEDH 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  ERVKKSLEDNVFPAIGTRNIAELSTRDLLLPIKAVETSGRLEVASRLQQRTTAIMRYAVQ  178
             RV + LE  +FP IG+ +I +L T +LL PIK V++SG+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVASGNRKHRPALALKRIPELLQKIDGYTGRPLTRWATELTLLIFI  238
            ++ ID NPA +MAGA+++ + +H PAL+  R+PE+L ++ +Y GR +TR A EL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIPDVKHSHRGSKMHTPHLVPLSKQALAILKQI  298
            RSSELRFARW E+DF+ S+W +P+ RE I +V+ S RG KM   H+VPLS+QA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KQFCGKHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            KQ+ G  EL+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SKDAVERQMSHMERNSVRAAYIHKAEFIDERKLMLQWWADFLDANREKGITPFDYAKI  416
            S DA+ERQ+SH ERN+VRAAYIH +E +DER+LM+QWWAD+LD  +   ITP++YA++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

90) APECO1_3534 in NC_008563


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  411 bits (1546),  Expect = 5e-116, Method: Compositional matrix adjust.
 Identities = 225/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

91) CE10_4872 in NC_017646


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  411 bits (1546),  Expect = 5e-116, Method: Compositional matrix adjust.
 Identities = 225/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

92) int in NC_011742


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  411 bits (1546),  Expect = 5e-116, Method: Compositional matrix adjust.
 Identities = 225/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

93) EAM_3037 in NC_013971


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  411 bits (1545),  Expect = 6e-116, Method: Compositional matrix adjust.
 Identities = 241/417 (58%), Positives = 325/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGNGMHLLVHPNGSRYWRLQYRFGG--KQKMLALGVYPD  58
            M L   +V TAKP DK YK++DG G+ L V ++GS+YWR++YR  +  K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrdearKLLANSIDPGDKKKNDKVEQEEARTFEELAVEWHATNKKWSEEHSR  118
            V+LA+ARA+RDEA+KLL ++IDP   +K+ + E+  A TFE +A EWHA+NK+WSE+H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVEMSGRLEVASRLQQRTTAIMRYAVQS  178
            RVL+ LE  +FP IG  +I +LKT +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLLDYNPAQEMVGAVASSNRQHRPALELKRTPELLQRIDSYTGRPLTCLAVELTLLVFIR  238
            + +D NPA +M GA+++++ +H PAL   R PE+L R+ +Y GR +T +AVEL+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFETSMWMIPAEREAIEGVKHSQRGSKMRTPHLVPLSRQALAILEQIK  298
            SSELRFARW E+DF+ S+W +PA RE I GV+ S RG KM+  H+VPLSRQA+ +LEQ+K
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TFSGDHELIFIGDHNPRKPMSENTVNKSLRVMGYDTQIEVCGHGFRTMACSSLIESGLWS  358
             +SGD EL+F GDH++ K MSENTVN +LR MGYDT+ EVCGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVKRQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANREKAVSPFDFAKI  415
             DA+ RQ+SH ERN+VRAAYIH +EHLDER+LM+QWWAD+LD  +   ++P+++A++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

94) intB in NC_013961


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  411 bits (1545),  Expect = 6e-116, Method: Compositional matrix adjust.
 Identities = 241/417 (58%), Positives = 325/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGNGMHLLVHPNGSRYWRLQYRFGG--KQKMLALGVYPD  58
            M L   +V TAKP DK YK++DG G+ L V ++GS+YWR++YR  +  K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrdearKLLANSIDPGDKKKNDKVEQEEARTFEELAVEWHATNKKWSEEHSR  118
            V+LA+ARA+RDEA+KLL ++IDP   +K+ + E+  A TFE +A EWHA+NK+WSE+H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVEMSGRLEVASRLQQRTTAIMRYAVQS  178
            RVL+ LE  +FP IG  +I +LKT +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLLDYNPAQEMVGAVASSNRQHRPALELKRTPELLQRIDSYTGRPLTCLAVELTLLVFIR  238
            + +D NPA +M GA+++++ +H PAL   R PE+L R+ +Y GR +T +AVEL+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFETSMWMIPAEREAIEGVKHSQRGSKMRTPHLVPLSRQALAILEQIK  298
            SSELRFARW E+DF+ S+W +PA RE I GV+ S RG KM+  H+VPLSRQA+ +LEQ+K
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TFSGDHELIFIGDHNPRKPMSENTVNKSLRVMGYDTQIEVCGHGFRTMACSSLIESGLWS  358
             +SGD EL+F GDH++ K MSENTVN +LR MGYDT+ EVCGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVKRQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANREKAVSPFDFAKI  415
             DA+ RQ+SH ERN+VRAAYIH +EHLDER+LM+QWWAD+LD  +   ++P+++A++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

95) ECO55CA74_24440 in NC_017656


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  411 bits (1545),  Expect = 6e-116, Method: Compositional matrix adjust.
 Identities = 237/418 (57%), Positives = 328/418 (79%), Gaps = 3/418 (0%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYR--FDGKQKVLALGVYPM  58
            M L   +V T+KP DK +K++DG G+ L ++++GSKYWR++YR   D K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLGEARRKRDEAKKLVSDGIDPSEKKKADKIEQSEALTFESVARDWHKACKRKWSDSHS  118
            V+L++AR KRDEAKKL+ +GIDP   +K  + E+S A TFE++AR+WH A +++WS+ H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWH-ASNKRWSEDHR  119

Query  119  ERVLKSMEDGLFTAIGKRKISELNTRDLLAPIKAVEASGRLEVASRLQQRTTAVMRYAVQ  178
             RVL+ +E  +F  IG   I +L+T +LLAPIK V+ASG+ +VA RLQQR TA+MRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  NGLIDYNPAQEMAGAIAVAKRVHRPALPFERFSELLARIDSFKGRkltklavkltllIFI  238
            N+ ID NPA +MAGA++ +K  H PALP  RF+E+LAR+ +++GR +T++AV L+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFENAMWTIPGEREPLPGVKHSHRGSKMRTPHLVPLSCQALAVLTKI  298
            RSSELRFARW E+DF++++W +P+ RE + GV+ S RG KM+  H+VPLS QA+ +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KEISGDHELVFIGDHNFRKPMSENTVNKALRAMGYDTTVEVCGHGFRAMACSALIESGLW  358
            K+ISGD EL+F GDH+  K MSENTVN ALRAMGYDT  EVCGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SKDAVERQMSHQERNSVRAAYIHKAEHLDERKLMLQWWADYLDLLRIRQVSPFDFKKT  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDER+LM+QWWADYLD+++  +++P+++ + 
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

96) EC042_3174 in NC_017626


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  411 bits (1545),  Expect = 6e-116, Method: Compositional matrix adjust.
 Identities = 225/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTRDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

97) Dd586_0394 in NC_013592


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  410 bits (1541),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 242/418 (58%), Positives = 322/418 (78%), Gaps = 2/418 (0%)

Query  1    MALTDIKVRIAKPSDKQYKLTDGNGMHLLVHPNGSKYWRLQYRFGG--KQKMLALGVYPD  58
            M L   +V  AKP DK YK++DG G+ L V ++GSKYWR++YR  +  K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrdearKLLANGTDPGDKKKSDKVEQSEALTFKEVAIEWHSTNKKWSQEHSH  118
            V+LA+ARA+RDEA+KLL +G DP   +K  + E+S A TF  +A EWH++NK+WS++H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVEQSGRLEVASRLQQRTTAIMRYAVQS  178
            RVL+ LE  +FP IG  +I +LKT +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDYNPAQEMAGAVASSNRQHRPALDLKHTPELLRRIDNYTGRPLTRLAVELTLLIFIR  238
            + ID NPA +MAGA+++++ +H PAL   + PE+L R+  Y GR +TR+AVEL+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFDTALWTIPPEREPIDGVKHSHRGSKMRTPHLVPLSRQALATLKQIQ  298
            SSELRFARW E+DFD +LW +P+ RE I GV+ S RG KM+  H+VPLSRQA+  L Q++
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  QFSCDHELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWS  358
            Q+S D EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANREKVVSAFDFGKVS  416
             DA+ERQ+SH ERN+VRAAYIH +EHLDER+LM+QWWAD+LD  +   ++++++++V 
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVC  418

98) YpsIP31758_0809 in NC_009708


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  410 bits (1542),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 227/416 (55%), Positives = 323/416 (78%), Gaps = 2/416 (0%)

Query  1    MALTDVKVRSAKTEDKPYKLTDSDGMHLLVHPNGSKYWRLRYRYLG--KENTLALGVYPA  58
            M L   +V +AK  DK YK++D++G+ L V ++GSKYWR++YR  +  KE+ LA+GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   LSLSEARAKRDAARKLIAEGSDPSEVKRAKKALPDATQTFEVIARRWHAANKQWSEQHSA  118
            ++L++ARAKRD A+KL+ +G DP   ++  +A   ++ TFE IAR WHA+NK+WSE+H +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKNLEMYLFPVNGTRDIASLRTPDLLIPIRVAENAGFLEVSARLLQRTTAIMRYAVQC  178
            +VL+ LE+Y+FP  G+ DI  L+T++LL PI+  + +G  +V+ RL QR TAIMRYAVQ 
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIDYNPAQDMVGALTTVKRVHRPALELNRIPELLSRIEGYKGQPLTRLAVMLNLFVFIR  238
            + ID NPA DM GAL+T K  H PAL  +R+PE+L+R+ +Y+G+ +TR+AV L+L+ F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDTERALWTIPAEREPIPGVKFSHRGSKMRTTHLVPLSQQSLAMLEELR  298
            SSELR+ARW E+D +++LW +PA RE I GV++S RG KM+  H+VPLS+Q++ +LE+L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  LSGGESGLIFPGDHDPRKPISENTINKALRLMGYETKTEVCGHGFRAMACSALIESGLWS  358
              +G+  L+FPGDHD+ K +SENT+N ALR MGY+TKTEVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEFLDERRLMLQWWADFLDTNREIAVSPFDFAK  414
             DA+ERQ+SH ERN VRAAYIH +E LDERRLM+QWWAD+LD  +   ++P+++A+
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

99) ECP_2962 in NC_008253


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  410 bits (1544),  Expect = 7e-116, Method: Compositional matrix adjust.
 Identities = 225/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSRMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG +M+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

100) ECO103_3550 in NC_013353


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  410 bits (1544),  Expect = 7e-116, Method: Compositional matrix adjust.
 Identities = 222/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

101) ECO103_4929 in NC_013353


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  410 bits (1544),  Expect = 7e-116, Method: Compositional matrix adjust.
 Identities = 222/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

102) ECO111_5079 in NC_013364


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  410 bits (1544),  Expect = 7e-116, Method: Compositional matrix adjust.
 Identities = 222/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

103) E2348C_3220 in NC_011601


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  410 bits (1544),  Expect = 7e-116, Method: Compositional matrix adjust.
 Identities = 222/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

104) ECO26_5300 in NC_013361


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  410 bits (1544),  Expect = 7e-116, Method: Compositional matrix adjust.
 Identities = 222/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

105) ETAF_2789 in NC_017309


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  409 bits (1540),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 238/418 (57%), Positives = 327/418 (79%), Gaps = 3/418 (0%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYRFGG--KQKVLALGVYPM  58
            M L   +V T+KP DK +K++DG G+ L ++++GSKYWR++YR  +  K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLGEARRKRDEAKKLVFDGIDPSEKKKADKIEQSEALTFEAVARDWHTACKRKWSDSHS  118
            V+L++AR KRDEAKKL+ +GIDP   +K  + E+S A TFE++AR+WH++ KR WS+ H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKR-WSEDHR  119

Query  119  ERVLKSMEDGLFTAIGKRKISELNTRDLLAPIKAVEASGRLEVASRLQQRTTAVMRYAVQ  178
             RVL+ +E  +F  IG   I +L+T +LLAPIK V+ASG+ +VA RLQQR TA+MRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  NGLIDYNPAQEMAGAIAVAKRVHRPALPFERFSELLERIDSFKGRkltklavkltllIFI  238
            N+ ID NPA +MAGA++ +K  H PALP  RF+E+L R+ +++GR +T++AV L+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFDNAMWTIPAEREPLPGVKHSHRGSKMRTPHLVPLSCQALAVLTEI  298
            RSSELRFARW E+DFD+++W +PA RE + GV+ S RG KM+  H+VPLS QA+ +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KEISGDHELVFIGDHDFRKPMSENTVNKALRSMGYDTTVEVCGHGFRAMACSALIESGLW  358
            K+ISGD EL+F GDHD  K MSENTVN ALR+MGYDT  EVCGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SKDAVERQMSHQERNSVRAAYIHKAEHLDERKLMLQWWADYLDLLRIRQVSPFDFKKT  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDER+LM+QWWADYLD+++  +++P+++ + 
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

106) ECENHK_02620 in NC_018405


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  409 bits (1539),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 237/417 (57%), Positives = 329/417 (79%), Gaps = 3/417 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V +AKP  K+YK++DG G+ L V ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrdearKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHS  118
            V+LA+ARA+RDEA+KLL +G+DP  ++K  + E +  A TFE +AR+WHASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFASIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
            +RVL+ LE  +F+ IG  +I +LKT +LL PIK V++SG+ +VA RLQQR TAIMR+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFETAMWTIPGERELLEGVKHSQRGSKMRTPHLIPLSRQALTILEKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H++PLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMNGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLW  358
            K ++G++EL+F GDHD+ K MSENTVN ALR MGYDTKTEVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERSSVRAAYIHKAEHLGERRLMLQWWADYLDANREKVVSPFDFAQ  415
            S DA+ERQ+SH ER++VRAAYIH +EHL+ERRLM+QWWADYLD  +   ++P+++A+
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

107) Ser39006_3432 in NC_022268


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  409 bits (1538),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 227/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  1    MALTDLKVKSAKPSSKPIKLTDGFGMHLLVHTNGSKYWRFQYRFAG--KQKMLALGVYPS  58
            M L   +V +AKP  K  K++DG G+ L V ++GSKYWR +YR ++  K+  LA+GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAEARERRDNARKLIANGIDPSEKKKADKIEESGALTFETVARSWHSSNKTWSEGHRT  118
            V+LA+AR +RD+A+KL+ +GIDP   +K  + E+SGA TFET+AR WH+SNK WSE+HR+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  LILNSLTTHVFPIIGQRNVTDLKTRDLLVPVKKAEQTGHLELASRLQQRITAIMRYAVHN  178
             +L  L   +FP IG  ++ +LKT +LL P+KK + +G  ++A RLQQR+TAIMRYAV+N
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ALIEHNPAYDLAGAIATVKSVHRPALSLERIAELMERIEAYKGKGLTQLAVRLCLLTFIR  238
              I+ NPA D+AGA++T K+ H PAL+  R++E++ R+ AY+G+ +T++AV L LLTF+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEFDFKNALWTIPAEREPLKNIKFSHRGSKMKSPHLVPLSKQSLAILKEIK  298
            SSELRFARW EFDF ++LW +PA RE +K +++S RG KMK  H+VPLS+Q++ +L ++K
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  AISGAHKFVFTGFSYADKPISENTINKALRAMGYNTQKDVCCHGFRTMACSALIESGLWS  358
             ISG   ++F G   A K +SENT+N ALRAMGY+T+ +VC HGFRTMA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERSSVRAAYIHKAEHLDERRLMLQWWANFLDANSNCMIRPFEFAK  414
             DA+ERQ+SH ER++VRAAYIH +EHLDERRLM+QWWA++LD      I P+E+A+
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

108) ECH74115_4272 in NC_011353


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  408 bits (1534),  Expect = 4e-115, Method: Compositional matrix adjust.
 Identities = 221/417 (53%), Positives = 322/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALVVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+ V P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

109) Z4313 in NC_002655


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  408 bits (1534),  Expect = 4e-115, Method: Compositional matrix adjust.
 Identities = 221/417 (53%), Positives = 322/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALVVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+ V P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

110) ECs3843 in NC_002695


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  408 bits (1534),  Expect = 4e-115, Method: Compositional matrix adjust.
 Identities = 221/417 (53%), Positives = 322/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALVVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+ V P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

111) ECSP_3940 in NC_013008


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  408 bits (1534),  Expect = 4e-115, Method: Compositional matrix adjust.
 Identities = 221/417 (53%), Positives = 322/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALVVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+ V P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

112) intB in NC_013941


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  408 bits (1534),  Expect = 4e-115, Method: Compositional matrix adjust.
 Identities = 221/417 (53%), Positives = 322/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALVVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+ V P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

113) ECO55CA74_17295 in NC_017656


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  408 bits (1534),  Expect = 4e-115, Method: Compositional matrix adjust.
 Identities = 221/417 (53%), Positives = 322/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALVVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+ V P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

114) CDCO157_3594 in NC_017906


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  408 bits (1534),  Expect = 4e-115, Method: Compositional matrix adjust.
 Identities = 221/417 (53%), Positives = 322/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALVVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+ V P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

115) Ent638_0463 in NC_009436


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  408 bits (1534),  Expect = 5e-115, Method: Compositional matrix adjust.
 Identities = 244/417 (59%), Positives = 327/417 (79%), Gaps = 2/417 (0%)

Query  1    MALTDIKVRTAKPTDKQYKLTDSNGMHLLVHPNGSRYWRLQYRFGG--KQKMLALGVYPD  58
            M L   +V TAKP DK YK++D+ G+ L V ++GS+YWR++YR  +  K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrdearKLLANSIDPGDKKKNDKVEQEEARTFEQLAVEWHATNKKWSEEHSR  118
            V+LA+ARA+RDEA+KLL ++IDP   +K+ + E+  A TFE +A EWHA+NK+WSE+H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS  178
            RVL+ LE  +FP IG  +I +LKT +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDSYTGRPLTRWATELTLLIFIR  238
            + ID NPA +MAGA+++++ +H PAL   R+PE+L ++ +Y GR +TR A EL+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFETSMWTIPPEREPIPGVKHSHRGSKMRTPHLVPLSKQALEILRQIK  298
            SSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VPLS+QA+ +L Q+K
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  HFCGEYELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWS  358
            ++ G+ EL+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  KDAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANREKGITPFDYAKI  415
             DA+ERQ+SH ERN+VRAAYIH +EHLDER+LM+QWWAD+LD  +   ITP++YA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

116) EBL_c34780 in NC_017910


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  407 bits (1533),  Expect = 5e-115, Method: Compositional matrix adjust.
 Identities = 234/421 (56%), Positives = 329/421 (79%), Gaps = 3/421 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V +AKP  K+YK++DG+G+ L V ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrdearKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSTSHS  118
            V+LA+ARA+RDEA+KLL +G+DP  ++K  + E +  A TFE +AR+WHASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFASVGKRNIKDIGTRDLLVPIKAVEKSGRLEVAARLQQRTTAIMRFAVQ  178
            +RVL+ LE  +F+ +G  +I+++ T +LL PIK V+ SG+ +VA RLQQR TAIMR+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  NGLIDYNPAQEIAGAIATAKRKHRAALDLNRIPELLHRIDNYTGRPLTRLAVDLTLLVFI  238
            N+ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+  Y GR +TR+AV+L+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWTEVDFETAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALAILEKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H+VPLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMNGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKKEVCGHGFRTMACSSLIESGLW  358
            K ++G++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERSSVRAAYIHKAEHLGERRLMLQWWADYLDANREKGVSPFDFGNNGN  418
            S DA+ERQ+SH ER++VRAAYIH +EHL+ERRLM+QWWADYLD  +   ++P++++   N
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCN  419

Query  419  V  419
            +
Sbjct  420  I  420

117) YPK_3676 in NC_010465


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  407 bits (1532),  Expect = 6e-115, Method: Compositional matrix adjust.
 Identities = 244/421 (58%), Positives = 326/421 (78%), Gaps = 3/421 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V TAKP  K+YK++DG G+ L V ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLadararrdearKLLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHS  118
            ++LA+ARA+RDEA+KLL +G+DP   +K  + E +  A TFE +AREWHASN++WSE H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMSGRLEVASRLQQRTTAIMRYAVQ  178
            +RVL+ LE  +F  IG  +I +L T +LL+PIK V+ SG+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA +MAGA++T K +H +AL  +R +E+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILGKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H+VPLSRQA+ +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADDLDANRQQAISPFDYAKVNN  418
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWAD LD  + + I+P++YA+V N
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCN  419

Query  419  L  419
            +
Sbjct  420  I  420

118) H650_18115 in NC_021500


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  407 bits (1532),  Expect = 6e-115, Method: Compositional matrix adjust.
 Identities = 235/417 (57%), Positives = 330/417 (80%), Gaps = 3/417 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V +AKP  K+YK++DG+G+ L V ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrdearKLLANGVDPTENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHS  118
            V+LA+ARA+RDEA+KLL +G+DP  ++K  + E +  A TFE +AR+WHASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFAIIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
            +RVL+ LE  +F+ IG  +I +LKT +LL PIK V++SG+ +VA RLQQR TAIMR+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFAHWSEVDFETAMWTIPGEREPLEGVKHSQRGSKMKTPHLVPLSQQALAILEKI  298
            RSSELRFA+W E DF+ ++W +P+ RE + GV+ S RG KMK  H+VPLS+QA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMNGNRDLIFVGDHDPRKPMSENTVNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLW  358
            K ++G+++L+F GDHD+ K MSENTVN ALR MGYDTKTEVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERSSVRAAYIHKAEHLGERRLMLQWWADYLDANREIGVSPFDFGK  415
            S DA+ERQ+SH ER++VRAAYIH +EHL+ERRLM+QWWADYLD  +   ++P+++++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

119) int in NC_011750


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  407 bits (1532),  Expect = 6e-115, Method: Compositional matrix adjust.
 Identities = 224/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWRADFLDANREKGISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QW+AD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

120) A1122_08715 in NC_017168


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  406 bits (1528),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 240/418 (58%), Positives = 324/418 (78%), Gaps = 3/418 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYR--FDGKEKMLALGKYPE  58
            M L+  +V TAKP  K+YK++DG G+ L V ++GSKYWR++YR   D KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHS  118
            ++LA+ARA+RDEA+K L +G+DP   +K  + E +  A TFE +AREWHASN++WSE H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
            +RVL+ LE  +F  IG  +I +L T +LL+PIK V+ +G+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA +MAGA++T K +H +AL  +R +E+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H++PLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKL  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWADYLD  +   ++P+++A++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

121) YpAngola_A4051 in NC_010159


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  406 bits (1529),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 241/418 (58%), Positives = 324/418 (78%), Gaps = 3/418 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYR--FDGKEKMLALGKYPE  58
            M L+  +V TAKP  K+YK++DG G+ L V ++GSKYWR++YR   D KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHS  118
            ++LA+ARA+RDEA+K L +G+DP   +K  + E +  A TFE +AREWHASN++WSE H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
            +RVL+ LE  +F  IG  +I +L T +LL+PIK V+ +G+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVSTGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA +MAGA+ST K +H +AL  +R +E+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H++PLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKL  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWADYLD  +   ++P+++A++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

122) YPA_2939 in NC_008150


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  406 bits (1528),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 240/418 (58%), Positives = 324/418 (78%), Gaps = 3/418 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYR--FDGKEKMLALGKYPE  58
            M L+  +V TAKP  K+YK++DG G+ L V ++GSKYWR++YR   D KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHS  118
            ++LA+ARA+RDEA+K L +G+DP   +K  + E +  A TFE +AREWHASN++WSE H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
            +RVL+ LE  +F  IG  +I +L T +LL+PIK V+ +G+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA +MAGA++T K +H +AL  +R +E+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H++PLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKL  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWADYLD  +   ++P+++A++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

123) intB in NC_003143


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  406 bits (1528),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 240/418 (58%), Positives = 324/418 (78%), Gaps = 3/418 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYR--FDGKEKMLALGKYPE  58
            M L+  +V TAKP  K+YK++DG G+ L V ++GSKYWR++YR   D KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHS  118
            ++LA+ARA+RDEA+K L +G+DP   +K  + E +  A TFE +AREWHASN++WSE H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
            +RVL+ LE  +F  IG  +I +L T +LL+PIK V+ +G+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA +MAGA++T K +H +AL  +R +E+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H++PLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKL  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWADYLD  +   ++P+++A++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

124) intB in NC_017154


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  406 bits (1528),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 240/418 (58%), Positives = 324/418 (78%), Gaps = 3/418 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYR--FDGKEKMLALGKYPE  58
            M L+  +V TAKP  K+YK++DG G+ L V ++GSKYWR++YR   D KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHS  118
            ++LA+ARA+RDEA+K L +G+DP   +K  + E +  A TFE +AREWHASN++WSE H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
            +RVL+ LE  +F  IG  +I +L T +LL+PIK V+ +G+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA +MAGA++T K +H +AL  +R +E+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H++PLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKL  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWADYLD  +   ++P+++A++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

125) intB in NC_017160


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  406 bits (1528),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 240/418 (58%), Positives = 324/418 (78%), Gaps = 3/418 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYR--FDGKEKMLALGKYPE  58
            M L+  +V TAKP  K+YK++DG G+ L V ++GSKYWR++YR   D KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHS  118
            ++LA+ARA+RDEA+K L +G+DP   +K  + E +  A TFE +AREWHASN++WSE H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
            +RVL+ LE  +F  IG  +I +L T +LL+PIK V+ +G+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA +MAGA++T K +H +AL  +R +E+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H++PLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKL  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWADYLD  +   ++P+++A++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

126) YPN_0651 in NC_008149


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  406 bits (1528),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 240/418 (58%), Positives = 324/418 (78%), Gaps = 3/418 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYR--FDGKEKMLALGKYPE  58
            M L+  +V TAKP  K+YK++DG G+ L V ++GSKYWR++YR   D KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHS  118
            ++LA+ARA+RDEA+K L +G+DP   +K  + E +  A TFE +AREWHASN++WSE H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
            +RVL+ LE  +F  IG  +I +L T +LL+PIK V+ +G+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA +MAGA++T K +H +AL  +R +E+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H++PLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKL  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWADYLD  +   ++P+++A++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

127) intB in NC_014029


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  406 bits (1528),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 240/418 (58%), Positives = 324/418 (78%), Gaps = 3/418 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYR--FDGKEKMLALGKYPE  58
            M L+  +V TAKP  K+YK++DG G+ L V ++GSKYWR++YR   D KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHS  118
            ++LA+ARA+RDEA+K L +G+DP   +K  + E +  A TFE +AREWHASN++WSE H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
            +RVL+ LE  +F  IG  +I +L T +LL+PIK V+ +G+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA +MAGA++T K +H +AL  +R +E+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H++PLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKL  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWADYLD  +   ++P+++A++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

128) intB in NC_005810


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  406 bits (1527),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 240/418 (58%), Positives = 324/418 (78%), Gaps = 3/418 (0%)

Query  13   MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYR--FDGKEKMLALGKYPE  70
            M L+  +V TAKP  K+YK++DG G+ L V ++GSKYWR++YR   D KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  71   ISLadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHS  130
            ++LA+ARA+RDEA+K L +G+DP   +K  + E +  A TFE +AREWHASN++WSE H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  131  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  190
            +RVL+ LE  +F  IG  +I +L T +LL+PIK V+ +G+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  191  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  250
            ++ ID NPA +MAGA++T K +H +AL  +R +E+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  251  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  310
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H++PLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  311  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  370
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  371  SRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKL  428
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWADYLD  +   ++P+++A++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

129) intB in NC_004088


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  406 bits (1527),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 240/418 (58%), Positives = 324/418 (78%), Gaps = 3/418 (0%)

Query  13   MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYR--FDGKEKMLALGKYPE  70
            M L+  +V TAKP  K+YK++DG G+ L V ++GSKYWR++YR   D KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  71   ISLadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHS  130
            ++LA+ARA+RDEA+K L +G+DP   +K  + E +  A TFE +AREWHASN++WSE H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  131  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  190
            +RVL+ LE  +F  IG  +I +L T +LL+PIK V+ +G+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  191  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  250
            ++ ID NPA +MAGA++T K +H +AL  +R +E+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  251  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  310
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H++PLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  311  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  370
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  371  SRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKL  428
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWADYLD  +   ++P+++A++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

130) EAE_09085 in NC_015663


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  406 bits (1526),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 230/417 (56%), Positives = 319/417 (77%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPDEKPYKLADSGNMFLLVHPNGSRYWRLRYRFLG--KEKTLALGVYPE  58
            M L   ++ +AKP +K YK+AD+G ++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEAREKRDTARKLIAEGTDPCEHKRIKKSVPETAQTFEGIARQWHKSNKKWSDSHSE  118
            V+L++AR KRD A+KL+ +G DP  +++  ++    A TFE IAR+WH SNK+WS+ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KILKSLETHVFPFIGSRDITTLRTPDLLVPVkaaeakeiyeiaaRLQQRITAIMRYAAQS  178
            ++L+ LE  +FP IGS DI  L+T++LL P+K  +A    ++A RLQQR+TAIMRYA Q+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIITYNPAVDMAGALTTVKRQHRPALALNRISELLERLDAYRGQPLTRLATKLTLLIFIR  238
            + I  NPA DMAGAL+T K +H PAL+ +R++E+L RL AYRG+ +TR+A  L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFKKAMWTIPPERKPIEGVKYSHRGSKMRTEHLVPLSTQALDILQQIH  298
            SSELRFARW E+DF K++W +P+ R  I GV+YS RG KM+ EH+VPLS QA+ +L+Q+ 
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TISGEYELIFTGDHNPWKPMSENTVNNALRLMGYDTKIDVCGHGFRAMACSSLIESGLWS  358
             ISG+ EL+F GDH++ K MSENTVN+ALR MGYDTK +VCGHGFR+MA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEFLDERRLMLQWWADFLDANEEKTVSPFDFAKL  415
             DA+ERQ+SH ERN VRAAYIH +E LDERRLM+QWWAD+LD  +   ++P+++A++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

131) ECO103_5061 in NC_013353


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  405 bits (1523),  Expect = 3e-114, Method: Compositional matrix adjust.
 Identities = 240/416 (58%), Positives = 325/416 (79%), Gaps = 2/416 (0%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGNGMHLLVHPNGSKYWRLQYRFGG--KQKMLALGVYPD  58
            M L   +V TAKP DK YK++DG G+ L V ++GSKYWR++YR  +  K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrddarKLLANGIDPGDKKKNDKIEQEEARTFEQLAIEWHATNKKWSEEHSR  118
            V+LA+ARA+RD+A+KLL +GIDP   +K+ + E+  A TFE +A EWHA+NK+WSE+H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLKSLEDNLFPAIGKRNIADLKTRDLLAPIKAVELSGRLEVASRLQQRTTAIMRYAVQS  178
            RVL+ LE  +FP IG  +I +LKT +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLLDYNPAQEMVGAVASNNRQHRPALQLKLIPELLRRIDSYTGRPLTRLAVELTLLVFIR  238
            + +D NPA +M GA+++ + +H PAL    +PE+L R+ +Y GR +TR+AVEL+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFETSMWTIPAEREAIEGVKHSQRGSKMRTPHLVPLSHQALAILKDVY  298
            SSELRFARW E+DF+ S+W +PA RE I GV+ S RG KM+  H+VPLS+QA+ +L ++ 
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  KLSGDRDFVFIGDHDHRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWS  358
            ++SGD++++F GDHD  K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHMERSSVRAAYIHKAEHLDERRLMLQWWADFLDANRESEVSPYDFGK  414
             DA+ERQ+SH ER++VRAAYIH +EHLDERRLM+QWWAD+LD  +  +++PY++++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

132) ECO111_3718 in NC_013364


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  405 bits (1524),  Expect = 3e-114, Method: Compositional matrix adjust.
 Identities = 224/417 (54%), Positives = 321/417 (77%), Gaps = 4/417 (0%)

Query  1    MALTDAKIRAAKPSDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKR--ARKLISEGIDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  116
            V+L++AR+KR  A+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  117  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  176
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  177  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIR  236
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  237  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  296
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  297  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  356
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  357  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKI  413
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

133) int in NC_011741


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  404 bits (1521),  Expect = 5e-114, Method: Compositional matrix adjust.
 Identities = 239/416 (58%), Positives = 325/416 (79%), Gaps = 3/416 (0%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYR--FDGKQKVLALGVYPM  58
            M L   +V T+KP DK +K++DG G+ L ++++GSKYWR++YR   D K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLGEARRKRDEAKKLVSDGIDPSEKKKADKIEQSEALTFEAVARDWHTACKRKWSDSHS  118
            V+L++AR KRDEAKKL+ +GIDP   +K  + E+S A TFE++AR+WH++ KR WS+ H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKR-WSEDHR  119

Query  119  ERVLKSMEDGLFTAIGRRKISELNTRDLLAPIKAVEASGRLEVASRLQQRTTAVMRYAVQ  178
             RVL+ +E  +F  IG   I +L+T +LLAPIK V+ASG+ +VA RLQQR TA+MRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  NGLIDYNPAQEMAGAIAVAKRVHRPALPFERFSELLERIDSFKGRkltklavkltllIFI  238
            N+ ID NPA +MAGA++ +K  H PALP  RF+E+L R+ +++GR +T++AV L+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFDNAMWTIPGEREPLPGVKHSHRGSKMKTPHLVPLSRQALELLKDI  298
            RSSELRFARW E+DFD+++W +P+ RE + GV+ S RG KMK  H+VPLSRQA+ LL ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  REISGECELVFIGDHDFRKPMSENTVNKALRSMGYDTTVEVCGHGFRAMACSALIESGKW  358
            ++ISG+ EL+F GDHD  K MSENTVN ALR+MGYDT  EVCGHGFR+MA +AL ESG W
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMLQWWADYLNALKDRFISPFDFT  414
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWADYL+ ++   I+P++++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYA  415

134) YPDSF_3248 in NC_009381


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  404 bits (1520),  Expect = 6e-114, Method: Compositional matrix adjust.
 Identities = 239/418 (58%), Positives = 323/418 (78%), Gaps = 3/418 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRHR--FDGKEKMLALGKYPE  58
            M L+  +V TAKP  K+YK++DG G+ L V ++GSKYWR++ R   D KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHS  118
            ++LA+ARA+RDEA+K L +G+DP   +K  + E +  A TFE +AREWHASN++WSE H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
            +RVL+ LE  +F  IG  +I +L T +LL+PIK V+ +G+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA +MAGA++T K +H +AL  +R +E+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H++PLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKL  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWADYLD  +   ++P+++A++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

135) KPN2242_01530 in NC_017540


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  403 bits (1516),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 236/418 (57%), Positives = 325/418 (78%), Gaps = 7/418 (1%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V +AKP  K+YK++DG G+ L V ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrdearKLLANDVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHS  118
            V+LA+ARA+RDEA+KLL +++DP  ++K  + E +  A TFE +AR+WHASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFAVIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTTIMRYAVQ  178
            +RVL+ LE  +F+ IG  +I +LKT +LL PIK V++SG+ +VA RLQQR T+IMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYTGRPLTRLAVELTLLVFI  238
            ++ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVNFETAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALAILEKI  298
            RSSELRFARW E +F+ ++W +P+ RE + GV+ S RG KM+  H+VPLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMNGNRELIFVGDHDPRK----NTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  354
            K ++G++EL+F GDHD+ K    NTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  355  SKDAVERQMSHQERNTVRAAYIHKAEHLGERRLMLQWWADYLDANKMAAITPFDYAKI  412
            S DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWADYLD  +   ITP++YA++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

136) W5S_1543 in NC_017845


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  403 bits (1518),  Expect = 8e-114, Method: Compositional matrix adjust.
 Identities = 235/418 (57%), Positives = 326/418 (78%), Gaps = 3/418 (0%)

Query  1    MALTDIKVRSAKPEEKPYKLTDGNGMFLLVHTNGSKYWRLRYR--SDGKEKTLALGVYPE  58
            M L   +V +AKP +K YK++DG G++L V ++GSKYWR++YR  SD KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARQKRDEARKLIAAGVDPNEHKKAVKTQQQDDEQTFEAVARAWHTDNKKWSESHA  118
            V+L++AR KRDEA+KL+  G+DP+ ++K  ++++  +  TFE++AR WH+ NK+WSE H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN-SGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ERILKSLSDNIFPAIGSKHISDLKTRDLLRPIKSVERSGRLEVAKRLKQRVTAIMTYAVQ  178
             R+L+ L   IFP IGS +I +LKT +LL PIK V+ SG+ +VA+RL+QRVTAIM YAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  NGLIDYNPAQDMAGAIMPGKVEHrpalalerlpellGRIDGYKGREFTKWVINLSLLIFI  238
            N+ ID NPA DMAGA+   K  H PAL+  R+PE+L+R+ +Y+GR  T+  ++LSLL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWPEIDFERALWTIPPEREPIPGVKFSERGSKMHTPHLVPLSRQALEILTKI  298
            RSSELRFARW E+DF+++LW +P+ RE I GV++S RG KM   H+VPLSRQA+ +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  REVSGHCELVFIGDHSSRKPVSEGTVNKALQTMGYDTKTEVCGHGFRTMACSSLIESGLW  358
            +++SG+ EL+F GDH + K +SE TVN AL++MGYDTKTEVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNGVRAAYIHKAEHLDERRLMLQWWADFLDANRERGVSPFDFGKL  416
            S DA+ERQ+SH ERN VRAAYIH +EHLDERRLM+QWWAD+LD  +   ++P++++++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

137) Pecwa_1669 in NC_013421


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  403 bits (1518),  Expect = 9e-114, Method: Compositional matrix adjust.
 Identities = 234/418 (56%), Positives = 327/418 (79%), Gaps = 3/418 (0%)

Query  1    MALTDIKVRSTKPEEKPYKLTDGNGMFLLVHTNGSKYWRLRYR--SDGKEKTLALGVYPE  58
            M L   +V ++KP +K YK++DG G++L V ++GSKYWR++YR  SD KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARQKRDEARKLIAAGVDPNEHKKAVKTQQQDDAQTFEVVARAWHADNKKWSGSHA  118
            V+L++AR KRDEA+KL+  G+DP+ ++K  ++++  +A TFE +AR WHA NK+WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN-SGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ERILKSLSDNIFPAIGGAHIANLKTRDLLTPIKSVERSGRLEVAKRLKQRVTAIMTYAVQ  178
             R+L+ L   IFP IG+++I +LKT +LL+PIK V+ SG+ +VA+RL+QRVTAIM YAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  NGLIDYNPAQDMAGAIMPGKVEHrpalalerlpellGRIDGYKGREFTKWVINLSLLIFI  238
            N+ ID NPA DMAGA+   K  H PAL+  R+PE+L+R+ +Y+GR  T+  ++LSLL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWPEIDFERALWTIPPEREPIPGVKFSERGSKMHTPHLVPLSRQALEILKKI  298
            RSSELRFARW E+DF+++LW +P+ RE I GV++S RG KM   H+VPLSRQA+ +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  REVSGHCELVFIGDHSSRKPVSEGTVNKALQTMGYDTKTEVCGHGFRTMACSSLIESGLW  358
            +++SG+ EL+F GDH + K +SE TVN AL++MGYDTKTEVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNGVRAAYIHKAEHLDERKLMLQWWADFLDANRERGVSPFDFGKV  416
            S DA+ERQ+SH ERN VRAAYIH +EHLDER+LM+QWWAD+LD  +   ++P+++++V
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

138) intB in NC_017265


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  402 bits (1514),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 239/418 (58%), Positives = 323/418 (78%), Gaps = 3/418 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYR--FDGKEKMLALGKYPE  58
            M L+  +V TAKP  K+YK++DG G+ L V ++GSKYWR++YR   D KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWYASNRQWSEAHS  118
            ++LA+ARA+RDEA+K L +G+DP   +K  + E +  A TFE +AREW ASN++WSE H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
            +RVL+ LE  +F  IG  +I +L T +LL+PIK V+ +G+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA +MAGA++T K +H +AL  +R +E+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H++PLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKL  416
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWADYLD  +   ++P+++A++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

139) A464_4477 in NC_021870


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  401 bits (1507),  Expect = 8e-113, Method: Compositional matrix adjust.
 Identities = 236/417 (57%), Positives = 317/417 (77%), Gaps = 3/417 (0%)

Query  1    MALTDRAIVHAKPCGKPYKLSDSHGLYLLVNPNGSKRWYIKYR--FVNKEKKLALGPYPL  58
            M L  R +  AKP +K YK++D+ GLYL V+++GSK W +KYR    +KE +LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   LTLAQARRMREEAQLLLISGIDPSAHRKAERLAITPEHTFESVAREWVTSNVNWSAEHKK  118
            +TLAQAR  R+EA+ LL+ GIDP +++K  +   +   TFE++AREW +SN  WS +H+ 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLRYFELYVFPTNGSCDITKMKVKNLLVPIKEVEKAGKLDVASRLQQRTACVMRYAVQN  178
            RVLRY+ELY+FP  GS DI ++K  +LL PIK V+ +GK DVA RLQQR + +MRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIDHNPASDLTGAVSTPKVRHHPALDLNLIPDFLERIDDYKGRqltqlavklalllFIR  238
            + ID NPASD++GA+ST K RH PAL  + +P+FL R+  Y+GR +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWDEIDLRNAMWTIPAEREPIPGVKYSVRGAKMHSPHLVPLSRQAIELLHEVR  298
            SSELRFARWDE+D+ +++W +PA RE I GV+YS RG KM   H+VPLSRQA+ LL++++
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  QHCRPGTELVFPGDHNYRKPMSENTINKALRLMGYDTQKDVCGHGFRTMACSALVESGLW  358
            Q    + EL+FPGDH+  K MSENT+N ALR MGYDT+ +VCGHGFRTMA +AL ESGLW
Sbjct  301  QIS-GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SSDAVERQMSHQERKRVRAAYIHKAQHLEERREMMQWWADYLDANRFRHVVPYGFKK  415
            S DA+ERQ+SH ER+ VRAAYIH ++HL+ERR M+QWWADYLD  ++ H+ PY + +
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

140) CKO_03532 in NC_009792


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  400 bits (1506),  Expect = 7e-113, Method: Compositional matrix adjust.
 Identities = 238/415 (58%), Positives = 320/415 (78%), Gaps = 3/415 (0%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYR--FDGKQKVLALGVYPM  58
            M L   +V T+KP DK +K++DG G+ L ++++GSKYWR++YR   D K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLGEARRKRDEAKKLVSVGIDPSEKKKADKIEQSEALTFEAVARDWHTACKRKWSDSHS  118
            V+L++AR KRDEAKKL+  GIDP   +K  + E+S A TFE++AR+WH++ KR WS+ H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKR-WSEDHR  119

Query  119  ERVLKSMEDGLFTTIGKRKISELNTRDLLAPIKAVEASGRLEVASRLQQRTTAVMRYAVQ  178
             RVL+ +E  +F  IG   I +L+T +LLAPIK V+ASG+ +VA RLQQR TA+MRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  NGLIDYNPAQEMAGAIAVAKRIHRPALPFERFSELLERIDNFKGRkltklavkltllIFI  238
            N+ ID NPA +MAGA++ +K  H PALP  RF+E+L R+  ++GR +T++AV L+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFENAMWTIPGEREPLPGVKHSHRGSKMKTPHLVPLSRQALELLKAI  298
            RSSELRFARW E+DF++++W +P+ RE + GV+ S RG KMK  H+VPLSRQA+ LL  +
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  REISGEFDLVFIGDHDFRKPMSENTVNKALRSMGYDTTVEVCGHGFRAMACSALIESGKW  358
            ++ISG+ +L+F GDHD  K MSENTVN ALR+MGYDT  EVCGHGFR+MA +AL ESG W
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMLQWWADYLDETTKRRIAPFDF  413
            S DA+ERQ+SH ERN+VRAAYIH +EHLDERRLM+QWWADYLD     +I+P+++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEY  414

141) intB in NC_011748


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  400 bits (1505),  Expect = 8e-113, Method: Compositional matrix adjust.
 Identities = 230/392 (59%), Positives = 307/392 (79%), Gaps = 2/392 (0%)

Query  1    MHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGD  58
            + L V ++GSKYWR++YR   + K+  LA+GV P +TLA+AR +RDEA+KLL +G+DP  
Sbjct  26   LYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKT  85

Query  59   KKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTR  118
             +K+ + E+S A TF  +A EWH++NK+WSEDH  RVL+ LE  +F+ +G  +I +LKT 
Sbjct  86   EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTS  145

Query  119  DLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPA  178
            +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ++ ID NPA +MAGA+++ + +H PA
Sbjct  146  HLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPA  205

Query  179  LELKRIPELLTKIDSYTGRPLTRWATELSLLIFIRSSELRFARWSEIDFEASIWTIPPER  238
            L   R+PE+L+++ +Y GR +TR A ELSLL F+RSSELRFARW E+DF+ S+W +P+ R
Sbjct  206  LPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKR  265

Query  239  EPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFCGAHDLIFIGDHDSHKPMSENTV  298
            E I GV+ S RG KM+  H+VPLS QA+ +L Q+KQ+ G  +L+F GDHD+ K MSENTV
Sbjct  266  EEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTV  325

Query  299  NSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMERNSVRAAYIHKAE  358
            NSALR MGYDTK EVCGHGFRTMA ++L ESGLWS DA+ERQ+SH ERN+VRAAYIH +E
Sbjct  326  NSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSE  385

Query  359  HLEERRLMLQWWADFLDANREKFISPFEYAKI  390
            HL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  386  HLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

142) KOX_09480 in NC_016612


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  399 bits (1501),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 242/417 (59%), Positives = 328/417 (79%), Gaps = 2/417 (0%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGSGMHLLVHPNGSKYWRLQYRFGG--KQKMLALGVYPE  58
            M L   +V TAKP DK YK++DG+G+ L V ++GSKYWR++YR  +  K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   IkladararrdearkllaNGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAH  118
            + LA+ARA+RDEA+KLL +G+DP   +K+ + E+S A TF  +A EWH++NK+WSEDH  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLKSLEDNLFAALGERNITELKTRDLLAPIKAVEMSGRLEVAARLQQRTSAIMRYAVQS  178
            RVL+ LE  +F+ +G  +I +LKT +LLAPIK V+ SG+ +VA RLQQR +AIMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFIR  238
            + ID NPA +MAGA+++++ +H PAL   R+PE+L ++ +Y GR +TR A EL+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPLSKQALAILKQIK  298
            SSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VPLS+QA+ +L Q+K
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  QFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWS  358
            Q+ G+ EL+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  KDAVERQMSHMERNSVRAAYIHKAEHLDERKFMLQWWADFLDVNREKGITPFDYAKI  415
             DA+ERQ+SH ERN+VRAAYIH +EHLDER++M+QWWAD+LD+ +   ITP++YA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

143) SPC_4619 in NC_012125


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  399 bits (1500),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 235/417 (57%), Positives = 320/417 (77%), Gaps = 3/417 (0%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYRFGG--KQKVLALGVYPM  58
            M L   +V T+KP DK +K++DG G+ L ++++GSKYWR++YR  +  K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLGEARRKRDEAKKLVSDGIDPSEKKKADKIEQSEALTFEAVARDWHTACKRKWSDFHS  118
            V+L++AR KRDEAKKL+ +GIDP   +K  + E+S A TFE++AR+WH++ KR WS+ H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKR-WSEDHR  119

Query  119  ERVLKSLEDNLFSSIGQRKIAELKTKDLLDPVKTVAASGRLEVAARLQQRTTVIMRYAVQ  178
             RVL+ LE  +F+ IG   I +LKT +LL P+K V ASG+ +VA RLQQR T IMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  NGLIDYNPAQEMSGAIAVAKRTHRPALPFDRFSELLERIESFKGRkltklavkltllIFI  238
            N+ ID NPA +M+GA++ +K  H PALP  RF+E+L R+ +++GR +T++AV L+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFVNAMWTIPGEREPLPGVKHSHRGSKMKTPHLVPLSRQALELLKAI  298
            RSSELRFARW E+DF +++W +P+ RE + GV+ S RG KMK  H+VPLSRQA+ LL  +
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  REISGECDLVFIGDHDFRKPMSENTVNKALRSMGYDTTVEVCGHGFRAMACSALIESGKW  358
            ++ISG+ +L+F GDHD  K MSENTVN ALR+MGYDT  EVCGHGFR+MA +AL ESG W
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHKAEHLDERKLMLQWWADYLDETTKRRIAPFDFDK  415
            S DA+ERQ+SH ERN+VRAAYIH +EHLDER+LM+QWWADYLD     +I+P+++ +
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

144) EcDH1_3727 in NC_017625


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  398 bits (1497),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 228/392 (59%), Positives = 308/392 (79%), Gaps = 2/392 (0%)

Query  1    MHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGD  58
            + L V ++GSKYWR++YR   + K+  LA+GV P +TLA+AR +RDEA+KLL +G+DP  
Sbjct  26   LYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKT  85

Query  59   KKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTR  118
             +K+ + E+S A TF  +A EWH++NK+WSEDH  RVL+ LE  +F+ +G  +I +LKT 
Sbjct  86   EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTS  145

Query  119  DLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPA  178
            +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ++ ID NPA +MAGA+++ + +H PA
Sbjct  146  HLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPA  205

Query  179  LELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPER  238
            L   R+PE+L+++ +Y GR +TR A+EL+LL F+RSSELRFARW E+DF+ S+W +P+ R
Sbjct  206  LPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKR  265

Query  239  EPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTV  298
            E I GV+ S RG KM+  H+VPLS QA+ +L Q+KQ+ G  +L+F GDHD+ K MSENTV
Sbjct  266  EEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTV  325

Query  299  NSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAE  358
            NSALR MGYDTK EVCGHGFRTMA ++L ESGLWS DA+ERQ+SH  RN+VRAAYIH +E
Sbjct  326  NSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSE  385

Query  359  HLEERRLMLQWWADFLDVNRERFISPFEYAKI  390
            HL+ERRLM+QWWAD+LD+ +   I+P+EYA++
Sbjct  386  HLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

145) intB in NC_017638


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  398 bits (1497),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 228/392 (59%), Positives = 308/392 (79%), Gaps = 2/392 (0%)

Query  1    MHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGD  58
            + L V ++GSKYWR++YR   + K+  LA+GV P +TLA+AR +RDEA+KLL +G+DP  
Sbjct  26   LYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKT  85

Query  59   KKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTR  118
             +K+ + E+S A TF  +A EWH++NK+WSEDH  RVL+ LE  +F+ +G  +I +LKT 
Sbjct  86   EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTS  145

Query  119  DLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPA  178
            +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ++ ID NPA +MAGA+++ + +H PA
Sbjct  146  HLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPA  205

Query  179  LELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPER  238
            L   R+PE+L+++ +Y GR +TR A+EL+LL F+RSSELRFARW E+DF+ S+W +P+ R
Sbjct  206  LPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKR  265

Query  239  EPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTV  298
            E I GV+ S RG KM+  H+VPLS QA+ +L Q+KQ+ G  +L+F GDHD+ K MSENTV
Sbjct  266  EEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTV  325

Query  299  NSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAE  358
            NSALR MGYDTK EVCGHGFRTMA ++L ESGLWS DA+ERQ+SH  RN+VRAAYIH +E
Sbjct  326  NSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSE  385

Query  359  HLEERRLMLQWWADFLDVNRERFISPFEYAKI  390
            HL+ERRLM+QWWAD+LD+ +   I+P+EYA++
Sbjct  386  HLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

146) intB in NC_011745


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  398 bits (1497),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 229/392 (59%), Positives = 309/392 (79%), Gaps = 2/392 (0%)

Query  1    MHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPEITLADARVRRDEARNLLANGVDPGD  58
            + L V ++GSKYWR++YR   + K+  LA+GV P +TLA+AR +RDEA++LL +G+DP  
Sbjct  26   LYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKT  85

Query  59   KKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTR  118
             +K+ + E+S A TF  +A EWH++NK+WSEDH  RVL+ LE  +F+ +G  +I +LKT 
Sbjct  86   EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTS  145

Query  119  DLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPA  178
            +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ++ ID NPA +MAGA+++ + +H PA
Sbjct  146  HLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPA  205

Query  179  LELKRIPELLAKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPER  238
            L   R+PE+LA++ +Y GR +TR A+EL+LL F+RSSELRFARW E+DF+ S+W +P+ R
Sbjct  206  LPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKR  265

Query  239  EPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTV  298
            E I GV+ S RG KM+  H+VPLS QA+ +L Q+KQ+ G  +L+F GDHD+ K MSENTV
Sbjct  266  EEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTV  325

Query  299  NSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMERNSVRAAYIHKAE  358
            NSALR MGYDTK EVCGHGFRTMA ++L ESGLWS DA+ERQ+SH ERN+VRAAYIH +E
Sbjct  326  NSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSE  385

Query  359  HLEERRLMLQWWADFLDVNRERFISPFEYAKI  390
            HL+ERRLM+QWWAD+LD+ +   I+P+EYA++
Sbjct  386  HLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

147) intB in NC_010473


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  398 bits (1497),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 228/392 (59%), Positives = 308/392 (79%), Gaps = 2/392 (0%)

Query  1    MHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGD  58
            + L V ++GSKYWR++YR   + K+  LA+GV P +TLA+AR +RDEA+KLL +G+DP  
Sbjct  26   LYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKT  85

Query  59   KKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTR  118
             +K+ + E+S A TF  +A EWH++NK+WSEDH  RVL+ LE  +F+ +G  +I +LKT 
Sbjct  86   EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTS  145

Query  119  DLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPA  178
            +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ++ ID NPA +MAGA+++ + +H PA
Sbjct  146  HLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPA  205

Query  179  LELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPER  238
            L   R+PE+L+++ +Y GR +TR A+EL+LL F+RSSELRFARW E+DF+ S+W +P+ R
Sbjct  206  LPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKR  265

Query  239  EPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTV  298
            E I GV+ S RG KM+  H+VPLS QA+ +L Q+KQ+ G  +L+F GDHD+ K MSENTV
Sbjct  266  EEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTV  325

Query  299  NSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAE  358
            NSALR MGYDTK EVCGHGFRTMA ++L ESGLWS DA+ERQ+SH  RN+VRAAYIH +E
Sbjct  326  NSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSE  385

Query  359  HLEERRLMLQWWADFLDVNRERFISPFEYAKI  390
            HL+ERRLM+QWWAD+LD+ +   I+P+EYA++
Sbjct  386  HLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

148) intB in NC_007779


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  398 bits (1497),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 228/392 (59%), Positives = 308/392 (79%), Gaps = 2/392 (0%)

Query  1    MHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGD  58
            + L V ++GSKYWR++YR   + K+  LA+GV P +TLA+AR +RDEA+KLL +G+DP  
Sbjct  26   LYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKT  85

Query  59   KKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTR  118
             +K+ + E+S A TF  +A EWH++NK+WSEDH  RVL+ LE  +F+ +G  +I +LKT 
Sbjct  86   EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTS  145

Query  119  DLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPA  178
            +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ++ ID NPA +MAGA+++ + +H PA
Sbjct  146  HLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPA  205

Query  179  LELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPER  238
            L   R+PE+L+++ +Y GR +TR A+EL+LL F+RSSELRFARW E+DF+ S+W +P+ R
Sbjct  206  LPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKR  265

Query  239  EPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTV  298
            E I GV+ S RG KM+  H+VPLS QA+ +L Q+KQ+ G  +L+F GDHD+ K MSENTV
Sbjct  266  EEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTV  325

Query  299  NSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAE  358
            NSALR MGYDTK EVCGHGFRTMA ++L ESGLWS DA+ERQ+SH  RN+VRAAYIH +E
Sbjct  326  NSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSE  385

Query  359  HLEERRLMLQWWADFLDVNRERFISPFEYAKI  390
            HL+ERRLM+QWWAD+LD+ +   I+P+EYA++
Sbjct  386  HLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

149) intB in NC_011751


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  398 bits (1497),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 228/392 (59%), Positives = 308/392 (79%), Gaps = 2/392 (0%)

Query  1    MHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGD  58
            + L V ++GSKYWR++YR   + K+  LA+GV P +TLA+AR +RDEA+KLL +G+DP  
Sbjct  26   LYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKT  85

Query  59   KKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTR  118
             +K+ + E+S A TF  +A EWH++NK+WSEDH  RVL+ LE  +F+ +G  +I +LKT 
Sbjct  86   EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTS  145

Query  119  DLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPA  178
            +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ++ ID NPA +MAGA+++ + +H PA
Sbjct  146  HLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPA  205

Query  179  LELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPER  238
            L   R+PE+L+++ +Y GR +TR A+EL+LL F+RSSELRFARW E+DF+ S+W +P+ R
Sbjct  206  LPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKR  265

Query  239  EPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTV  298
            E I GV+ S RG KM+  H+VPLS QA+ +L Q+KQ+ G  +L+F GDHD+ K MSENTV
Sbjct  266  EEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTV  325

Query  299  NSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAE  358
            NSALR MGYDTK EVCGHGFRTMA ++L ESGLWS DA+ERQ+SH  RN+VRAAYIH +E
Sbjct  326  NSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSE  385

Query  359  HLEERRLMLQWWADFLDVNRERFISPFEYAKI  390
            HL+ERRLM+QWWAD+LD+ +   I+P+EYA++
Sbjct  386  HLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

150) ETEC_4611 in NC_017633


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  398 bits (1496),  Expect = 4e-112, Method: Compositional matrix adjust.
 Identities = 228/392 (59%), Positives = 309/392 (79%), Gaps = 2/392 (0%)

Query  1    MHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPEITLADARVRRDEARNLLANGVDPGD  58
            + L V ++GSKYWR++YR   + K+  LA+GV P +TLA+AR +RDEA++LL +G+DP  
Sbjct  26   LYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKT  85

Query  59   KKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTR  118
             +K+ + E+S A TF  +A EWH++NK+WSEDH  RVL+ LE  +F+ +G  +I +LKT 
Sbjct  86   EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTS  145

Query  119  DLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPA  178
            +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ++ ID NPA +MAGA+++ + +H PA
Sbjct  146  HLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPA  205

Query  179  LELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPER  238
            L   R+PE+L+++ +Y GR +TR A+EL+LL F+RSSELRFARW E+DF+ S+W +P+ R
Sbjct  206  LPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKR  265

Query  239  EPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTV  298
            E I GV+ S RG KM+  H+VPLS QA+ +L Q+KQ+ G  +L+F GDHD+ K MSENTV
Sbjct  266  EEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTV  325

Query  299  NSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMERNSVRAAYIHKAE  358
            NSALR MGYDTK EVCGHGFRTMA ++L ESGLWS DA+ERQ+SH ERN+VRAAYIH +E
Sbjct  326  NSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSE  385

Query  359  HLEERRLMLQWWADFLDVNRERFISPFEYAKI  390
            HL+ERRLM+QWWAD+LD+ +   I+P+EYA++
Sbjct  386  HLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

151) intB in NC_011750


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  398 bits (1496),  Expect = 4e-112, Method: Compositional matrix adjust.
 Identities = 228/392 (59%), Positives = 309/392 (79%), Gaps = 2/392 (0%)

Query  1    MHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPEITLADARVRRDEARNLLANGVDPGD  58
            + L V ++GSKYWR++YR   + K+  LA+GV P +TLA+AR +RDEA++LL +G+DP  
Sbjct  26   LYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKT  85

Query  59   KKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTR  118
             +K+ + E+S A TF  +A EWH++NK+WSEDH  RVL+ LE  +F+ +G  +I +LKT 
Sbjct  86   EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTS  145

Query  119  DLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPA  178
            +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ++ ID NPA +MAGA+++ + +H PA
Sbjct  146  HLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPA  205

Query  179  LELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPER  238
            L   R+PE+L+++ +Y GR +TR A+EL+LL F+RSSELRFARW E+DF+ S+W +P+ R
Sbjct  206  LPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKR  265

Query  239  EPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTV  298
            E I GV+ S RG KM+  H+VPLS QA+ +L Q+KQ+ G  +L+F GDHD+ K MSENTV
Sbjct  266  EEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTV  325

Query  299  NSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMERNSVRAAYIHKAE  358
            NSALR MGYDTK EVCGHGFRTMA ++L ESGLWS DA+ERQ+SH ERN+VRAAYIH +E
Sbjct  326  NSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSE  385

Query  359  HLEERRLMLQWWADFLDVNRERFISPFEYAKI  390
            HL+ERRLM+QWWAD+LD+ +   I+P+EYA++
Sbjct  386  HLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

152) intB in NC_012971


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  398 bits (1496),  Expect = 4e-112, Method: Compositional matrix adjust.
 Identities = 227/392 (58%), Positives = 308/392 (79%), Gaps = 2/392 (0%)

Query  1    MHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGD  58
            + L V ++GSKYWR++YR   + K+  LA+GV P +TLA+AR +RDE++KLL +G+DP  
Sbjct  26   LYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKT  85

Query  59   KKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTR  118
             +K+ + E+S A TF  +A EWH++NK+WSEDH  RVL+ LE  +F+ +G  +I +LKT 
Sbjct  86   EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTS  145

Query  119  DLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPA  178
            +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ++ ID NPA +MAGA+++ + +H PA
Sbjct  146  HLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPA  205

Query  179  LELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPER  238
            L   R+PE+L+++ +Y GR +TR A+EL+LL F+RSSELRFARW E+DF+ S+W +P+ R
Sbjct  206  LPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKR  265

Query  239  EPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTV  298
            E I GV+ S RG KM+  H+VPLS QA+ +L Q+KQ+ G  +L+F GDHD+ K MSENTV
Sbjct  266  EEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTV  325

Query  299  NSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAE  358
            NSALR MGYDTK EVCGHGFRTMA ++L ESGLWS DA+ERQ+SH  RN+VRAAYIH +E
Sbjct  326  NSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSE  385

Query  359  HLEERRLMLQWWADFLDVNRERFISPFEYAKI  390
            HL+ERRLM+QWWAD+LD+ +   I+P+EYA++
Sbjct  386  HLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

153) intB in NC_012892


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  398 bits (1496),  Expect = 4e-112, Method: Compositional matrix adjust.
 Identities = 227/392 (58%), Positives = 308/392 (79%), Gaps = 2/392 (0%)

Query  1    MHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGD  58
            + L V ++GSKYWR++YR   + K+  LA+GV P +TLA+AR +RDE++KLL +G+DP  
Sbjct  26   LYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKT  85

Query  59   KKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTR  118
             +K+ + E+S A TF  +A EWH++NK+WSEDH  RVL+ LE  +F+ +G  +I +LKT 
Sbjct  86   EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTS  145

Query  119  DLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPA  178
            +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ++ ID NPA +MAGA+++ + +H PA
Sbjct  146  HLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPA  205

Query  179  LELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPER  238
            L   R+PE+L+++ +Y GR +TR A+EL+LL F+RSSELRFARW E+DF+ S+W +P+ R
Sbjct  206  LPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKR  265

Query  239  EPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTV  298
            E I GV+ S RG KM+  H+VPLS QA+ +L Q+KQ+ G  +L+F GDHD+ K MSENTV
Sbjct  266  EEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTV  325

Query  299  NSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAE  358
            NSALR MGYDTK EVCGHGFRTMA ++L ESGLWS DA+ERQ+SH  RN+VRAAYIH +E
Sbjct  326  NSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSE  385

Query  359  HLEERRLMLQWWADFLDVNRERFISPFEYAKI  390
            HL+ERRLM+QWWAD+LD+ +   I+P+EYA++
Sbjct  386  HLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

154) ECBD_3766 in NC_012947


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  398 bits (1496),  Expect = 4e-112, Method: Compositional matrix adjust.
 Identities = 227/392 (58%), Positives = 308/392 (79%), Gaps = 2/392 (0%)

Query  1    MHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGD  58
            + L V ++GSKYWR++YR   + K+  LA+GV P +TLA+AR +RDE++KLL +G+DP  
Sbjct  26   LYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKT  85

Query  59   KKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTR  118
             +K+ + E+S A TF  +A EWH++NK+WSEDH  RVL+ LE  +F+ +G  +I +LKT 
Sbjct  86   EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTS  145

Query  119  DLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPA  178
            +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ++ ID NPA +MAGA+++ + +H PA
Sbjct  146  HLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPA  205

Query  179  LELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPER  238
            L   R+PE+L+++ +Y GR +TR A+EL+LL F+RSSELRFARW E+DF+ S+W +P+ R
Sbjct  206  LPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKR  265

Query  239  EPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTV  298
            E I GV+ S RG KM+  H+VPLS QA+ +L Q+KQ+ G  +L+F GDHD+ K MSENTV
Sbjct  266  EEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTV  325

Query  299  NSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAE  358
            NSALR MGYDTK EVCGHGFRTMA ++L ESGLWS DA+ERQ+SH  RN+VRAAYIH +E
Sbjct  326  NSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSE  385

Query  359  HLEERRLMLQWWADFLDVNRERFISPFEYAKI  390
            HL+ERRLM+QWWAD+LD+ +   I+P+EYA++
Sbjct  386  HLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

155) intB in NC_012967


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  398 bits (1496),  Expect = 4e-112, Method: Compositional matrix adjust.
 Identities = 227/392 (58%), Positives = 308/392 (79%), Gaps = 2/392 (0%)

Query  1    MHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGD  58
            + L V ++GSKYWR++YR   + K+  LA+GV P +TLA+AR +RDE++KLL +G+DP  
Sbjct  26   LYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKT  85

Query  59   KKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTR  118
             +K+ + E+S A TF  +A EWH++NK+WSEDH  RVL+ LE  +F+ +G  +I +LKT 
Sbjct  86   EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTS  145

Query  119  DLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPA  178
            +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ++ ID NPA +MAGA+++ + +H PA
Sbjct  146  HLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPA  205

Query  179  LELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPER  238
            L   R+PE+L+++ +Y GR +TR A+EL+LL F+RSSELRFARW E+DF+ S+W +P+ R
Sbjct  206  LPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKR  265

Query  239  EPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTV  298
            E I GV+ S RG KM+  H+VPLS QA+ +L Q+KQ+ G  +L+F GDHD+ K MSENTV
Sbjct  266  EEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTV  325

Query  299  NSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAE  358
            NSALR MGYDTK EVCGHGFRTMA ++L ESGLWS DA+ERQ+SH  RN+VRAAYIH +E
Sbjct  326  NSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSE  385

Query  359  HLEERRLMLQWWADFLDVNRERFISPFEYAKI  390
            HL+ERRLM+QWWAD+LD+ +   I+P+EYA++
Sbjct  386  HLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

156) intB in NC_017663


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  398 bits (1496),  Expect = 4e-112, Method: Compositional matrix adjust.
 Identities = 227/392 (58%), Positives = 308/392 (79%), Gaps = 2/392 (0%)

Query  1    MHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGD  58
            + L V ++GSKYWR++YR   + K+  LA+GV P +TLA+AR +RDE++KLL +G+DP  
Sbjct  26   LYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKT  85

Query  59   KKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTR  118
             +K+ + E+S A TF  +A EWH++NK+WSEDH  RVL+ LE  +F+ +G  +I +LKT 
Sbjct  86   EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTS  145

Query  119  DLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPA  178
            +LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ++ ID NPA +MAGA+++ + +H PA
Sbjct  146  HLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPA  205

Query  179  LELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPER  238
            L   R+PE+L+++ +Y GR +TR A+EL+LL F+RSSELRFARW E+DF+ S+W +P+ R
Sbjct  206  LPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKR  265

Query  239  EPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTV  298
            E I GV+ S RG KM+  H+VPLS QA+ +L Q+KQ+ G  +L+F GDHD+ K MSENTV
Sbjct  266  EEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTV  325

Query  299  NSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAE  358
            NSALR MGYDTK EVCGHGFRTMA ++L ESGLWS DA+ERQ+SH  RN+VRAAYIH +E
Sbjct  326  NSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSE  385

Query  359  HLEERRLMLQWWADFLDVNRERFISPFEYAKI  390
            HL+ERRLM+QWWAD+LD+ +   I+P+EYA++
Sbjct  386  HLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

157) Dda3937_03406 in NC_014500


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  397 bits (1492),  Expect = 1e-111, Method: Compositional matrix adjust.
 Identities = 229/416 (56%), Positives = 316/416 (76%), Gaps = 2/416 (0%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYR--FGGKEKKLAFGAYPT  58
            M L    +  AKP DK YK++D+ GLYL + ++GSK W++KYR   + KE +LAFG  PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLANARKLREEARTILSAGDDPGVKKQHDKQAKKNGNTFEAIARQWVAANIRWSEAHAA  118
            V+LA+AR  R+EA+ +L  G DP   +++ +  +  + TFE+IAR+W A+N RWSE H +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLRSLELHVFPLIGNVLVTDLKTANLLIPLRVAEKKGCLETAARIQQRTTVIMRYAVQE  178
            +VLR LEL +FP IG+  + +LKT++LL P++  +  G  + A R+QQR T IMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIASNPANDLCGAITPPPKNHYPAlplerlpellerIEGYSGRLLTRLAVQLNLLIFIR  238
            + I SNPA+D+ GA++     HYPALP  R+PE+L R+ +Y GR++TR+AV+L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWTEIDLDNAMWTLPAQREPITGVRHSERGAKMKTPHLVPLSKQAVTVLKQLK  298
            SSELRFARW E+D+D+++W +PA+RE I GVR S RG KMK  H+VPLS+QA+ +L QLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  LLSGNGDLLFPGDHDARKPMSENTINKALRTMGYDTQADICGHGFRTIACSALIESGRWS  358
             +SG+ +LLFPGDHDA K MSENT+N ALR+MGYDT++++CGHGFRT+A +AL ESG WS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  KDAVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLDVCQHQFIPAYRFEK  414
             DA+ERQ+SH ERN+VRAAYIH +EHLDER  M+QWW+DYLD+ Q + I +Y + +
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

158) SARI_03082 in NC_010067


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  396 bits (1490),  Expect = 1e-111, Method: Compositional matrix adjust.
 Identities = 232/418 (56%), Positives = 323/418 (78%), Gaps = 3/418 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMFLLVKPNGSRYWRFRFRFGG--KQHLMAFGVYPD  58
            M L   +V +AKP +K Y + DG+G++L V ++GS+YWR ++R  +  K++ +AFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADarkkreearrLVAAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHA  118
            V+LA+AR KR+EA++L+  GIDP+ +++  + E++    TFE +AREW  +N++WSEDH 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  NRVKKSLEDNIFPAIGTRNIAELGTRDLLIPIKAVETSGRLEVASRLQQRTTAIMRYAVQ  178
            +RV + LE  IFP IG+ +I +L T +LL PIK V++SG+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGVIDYNPAQERAGAVASSNRQHRPALELKRIPELLEKIDGYIGRPLTRWATELTLLIFI  238
            ++ ID NPA + AGA+++++ +H PAL   R+PE+L ++ +Y GR +TR A EL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELCFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPLSKQALAILKQI  298
            RSSEL FARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VPLS+QA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            KQ+ G+ EL+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SKDAVERQMSHMEHNSVRAAYIHKAEHLDERKLMLQWWADFLDANRDKGITPFDYAKI  416
            S DA+ERQ+SH E+N+VRAAYIH +EHLDER+LM+QWWAD+LD  +   ITP++YA++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

159) Rahaq_1192 in NC_015061


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  396 bits (1491),  Expect = 1e-111, Method: Compositional matrix adjust.
 Identities = 228/415 (55%), Positives = 308/415 (75%), Gaps = 8/415 (1%)

Query  1    MPLTDTGIRGSKPKDKPYKLSDSNGLYLLVHSNGSKYWR--FRRTINGKDTTRALGMYPI  58
            M L    +  +KPKDK YK++D+ GLYL V ++GSKYWR  +RR  + K+   A+G+ P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   MTLAEARKARDEFLKSLSQGIDPLHAEKEKIA------SFEEIARQWHARKKTWSSLHSL  112
            +TLA+AR  RDE  K L QGIDP   +KE  A      +FE IAR+WHA +K WS  H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  113  NVMRAFETHLFPEIGSKAINRLTTQDLLAPLRAIEETGKHELASRLQQRTTSIMRYAVQS  172
             V+R +E  +FP+IGS  I +L T +LLAP++ ++ +GKH++A RLQQR T+IMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  173  GLIKYNPAQELTGAIETHKSQHRPALPLERIPELLQKIDSYSGRNLTKIAVKLNLLIFIR  232
            + I  NPA +++GA+ T K++H PALP  R+PE+L ++ +Y GR +T+IAV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  233  SSELRFSRWTEINKEHRLWEIPANREELEKVRFSYRGSKMKMPHLIPLSNQALVLIEELE  292
            SSELRF+RW E++ +  LW +PA+REE+  VR+SYRG KMK  H++PLS QA+VL+E+L 
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  293  ALSGDEVLMFPGDHYQHKPMSENTINKALRTMGFDTKTEICGHGFRAMACSALIESGRWS  352
             +SGD  L+FPGDH   K MSENT+N ALR+MG+DTKTE+CGHGFR+MA +AL ESG WS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  353  RDAVERQMSHQERNSVRAAYIHKAEHMEERRPMLQWWADYLEACRGEFIPPYAFN  407
             DA+ERQ+SH ERN+VRAAYIH +EH++ERR M+QWWADYL+  + E I PY + 
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYA  415

160) plu4477 in NC_005126


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  396 bits (1489),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 233/417 (56%), Positives = 315/417 (76%), Gaps = 5/417 (1%)

Query  1    MALTDVVARTAKPREQAYKLADAHGLYLMISPGGSKRWYLKYR--FEGKESRIAFGAYPL  58
            M L      TAKP++++YK+AD+ GLYL +S+ GSK W +KYR   + KE R+AFG  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLAKAREKRDEVRLLLADGINPAEKRGEGKKEAQDALITFEKVARDWHRNISQNRWSET  118
            ++LA+AR KRDE + LL +GI+P   + E++ E  +A  TFE +AR+WH   S++RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGA-YTFETIAREWH--ASNKRWSED  117

Query  119  HAGRVWRDMERNILPAIGHRHIADLKTKDLLEPLKAVEQNGHLDLASRLRQRVTDIMRYA  178
            H +RV R +E  I+P IG  +I +LKT +LL P+K V+ +G  D+A RL+QRVT IMRYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VQNDLIERNPAQDLSGAIAPPKATHRPALKLDKLPDFLARIENYKGRTLTTLALKFTLCV  238
            VQND I+ NPA D++GA++  KA H PAL   ++P+FLAR+  Y+GR +T +A+ ++L  
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  FIRSSELRFARWTEIDFKRAMWTIPAEREAIPGVKHSQRGAKMRTEHLVPLSRQALALLK  298
            F+RSSELRFARW E+DF +++W +PA RE I GV+ S RG KM+ EH+VPLSRQA+ LL 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  299  EIQAISGGHELIFPGDRRPTKPMSENTVNNALRVMGYDTTTELCGHGFRTMACSALVESG  358
            +++ ISG+ EL+FPGD+ +TK MSENTVN+ALR MGYDT TE+CGHGFRTMA +AL ESG
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  359  QWSRDAVERQMSHQERDSVRAAYIHKAEHIEERRLMLQWWADYLDANREGYVVPYEF  415
             WS DA+ERQ+SH ER++VRAAYIH +EH++ERRLM+QWWADYLD  +   + PYE+
Sbjct  358  LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEY  414

161) YpsIP31758_3540 in NC_009708


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  395 bits (1486),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 233/403 (58%), Positives = 317/403 (79%), Gaps = 3/403 (0%)

Query  1    MALSDVKVRSAKPEEKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGIYPE  58
            M L+  +V +AKP +K+YK++DG+G+ L V ++GSKYWR++YR  +  KE  LA+G+ P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHS  118
            ++LA+ARA+RDEA+K L +G+DP   +K  + E +  A TFE +AREWHASN++WSE H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFQSIGKRNITDLGTRDLLPPIKAVEMSGRLEVASRLQQRTTAIMRYAVQ  178
            +RVL+ LE  +F  IG  +I +L T +LL+PIK V+ SG+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA +MAGA++T K +H +AL  +R +E+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILEKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H+VPLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVDVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK +VCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHKAEHLDERKLMIQWWADFFG  401
            S DA+ERQ+SH ERN+VRAAYIH +EHLDER+LM+QWWAD+++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

162) Dd586_0881 in NC_013592


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  395 bits (1487),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 227/416 (55%), Positives = 313/416 (76%), Gaps = 2/416 (0%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYR--FGGKEKKLAFGAYPT  58
            M L    +  AKP DK YK++D+ GLYL + ++GSK W++KYR   + KE +LAFG  PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ASLATARKLREEARAVLCAGADPGVKKQQDKQARKNGNTFETVSRQWVAANIRWTEAHAA  118
             +LA AR  R+EA+ +L  G DP   +++ +     + TFET++R+W A+N RW+E H +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLRSLELHVFPLIGKTPLTDLKTADLLIPLRVAEKKGCLETAARIQQRTTVIMRYAVQE  178
            +VLR LEL +FP IG + + +LKT++LL P++  +  G  + A R+QQR T IMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIASNPANDLCGAITTPPKNHYPAlplerlpellerIEGYSGRLLTRLAVQLNLLIFIR  238
            + I SNPA+D+ GA++T    HYPALP  R+PE+L R+ +Y GR++TR+AV+L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWTEIDLDNAMWTLPAQREPITGVRHSERGAKMKTPHLVPLSKQAVTVLKQLK  298
            SSELRFARW E+D+D+++W +PA+RE I GVR S RG KMK  H+VPLS+QA+ +L QLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  LLSGNGDLLFPGDHDARKPMSENTINKALRTMGYDTQADICGHGFRTIACSALIESGRWS  358
             +SG+ +LLFPGDHDA K MSENT+N ALR+MGYDT++++CGHGFRT+A +AL ESG WS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  KDAVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLDACQHQFIPAYRFEK  414
             DA+ERQ+SH ERN+VRAAYIH +EHLDER  M+QWW+DYLD  Q + I +Y + +
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

163) intB in NC_007613


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  394 bits (1481),  Expect = 6e-111, Method: Compositional matrix adjust.
 Identities = 226/393 (58%), Positives = 306/393 (78%), Gaps = 3/393 (0%)

Query  1    MSLLVKPGGSKYWRFRFRFGG--KQHLMAFGVYPDVSLADARKKREEARKLVAAGIDPRE  58
            + L V + GSKYWR ++R  +  K++ +AFGV P V+LA+AR KR+EA+KL+  GIDP+ 
Sbjct  26   LYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKT  85

Query  59   HKRAVKEEQAKEIITFEKVAREWLVTNQKWSEEHANRVKKSLEDNIFPAIGSHNIAELGT  118
            +++  + E++    TFE +AREW  +N++WSE+H +RV + LE  IFP IGS +I +L T
Sbjct  86   EQKEAQAENS-GAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKT  144

Query  119  RDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASSNRQHRP  178
             +LL PIK V+ SG+ +VA RLQQR TAIMRYAVQ++ ID NPA +MAGA+++++ +H P
Sbjct  145  SHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYP  204

Query  179  ALELKRIPELLQKIDEYTGRPLTRWATELTLLIFIRSSELRFARWSEIDFETSMWTIPPE  238
            AL   R+PE+L ++  Y GR +TR A EL+LL F+RSSELRFARW E+DF+ S+W +P+ 
Sbjct  205  ALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAK  264

Query  239  REPIPGVKHSQRGAKMRTPHLVPLSKQALAILKQIKQFCGEHELIFIGDHDPSKPMSENT  298
            RE I GV+ S RG KM+  H+VPLS+QA+ +L Q+KQ+ G+ EL+F GDHD++K MSENT
Sbjct  265  REEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENT  324

Query  299  VNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSKDAVERQMSHMERNSVRAAYIHKA  358
            VNSALR MGYDTK EVCGHGFRTMA ++L ESGLWS DA+ERQ+SH ERN+VRAAYIH +
Sbjct  325  VNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTS  384

Query  359  EHLDERKLMLQWWADFLDANREKGITPFDYAKI  391
            EHLDER+LM+QWWAD+LD  +   ITP++YA++
Sbjct  385  EHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

164) int in NC_011748


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  394 bits (1482),  Expect = 6e-111, Method: Compositional matrix adjust.
 Identities = 226/417 (55%), Positives = 322/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+S+W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

165) O3M_22875 in NC_018650


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  394 bits (1482),  Expect = 6e-111, Method: Compositional matrix adjust.
 Identities = 226/417 (55%), Positives = 322/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+S+W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

166) O3K_22970 in NC_018658


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  394 bits (1482),  Expect = 6e-111, Method: Compositional matrix adjust.
 Identities = 226/417 (55%), Positives = 322/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+S+W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

167) SFxv_3245 in NC_017328


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  394 bits (1482),  Expect = 6e-111, Method: Compositional matrix adjust.
 Identities = 226/417 (55%), Positives = 322/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+S+W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

168) S4822 in NC_004741


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  394 bits (1482),  Expect = 6e-111, Method: Compositional matrix adjust.
 Identities = 226/417 (55%), Positives = 322/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+S+W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

169) SF2964 in NC_004337


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  394 bits (1482),  Expect = 6e-111, Method: Compositional matrix adjust.
 Identities = 226/417 (55%), Positives = 322/417 (78%), Gaps = 2/417 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +GIDP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298
            SSELR+ARW E+D+D+S+W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWS  358
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  EVCGHGFR+MA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKI  415
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

170) intB in NC_010554


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  392 bits (1473),  Expect = 3e-110, Method: Compositional matrix adjust.
 Identities = 247/420 (59%), Positives = 330/420 (79%), Gaps = 3/420 (0%)

Query  1    MALTDAKVRAAKPLDKSYKLTDGDGMHLMVHTNGSKYWRLQYRFGG--KQKMLALGVYPD  58
            M L   +V +AKP DK+YK++DG+G+ L V ++GSKYWR++YR  +  K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLaearekrdaarkLIANGFDPSekrkevkeeqqkeFNTFEKVARDWHATNQRWSEGHS  118
            ++LA+AR KRD A+KL+ +G+DP   +KE + E+   + TFE +AR+WHA+N+RWSE+H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY-TFETIAREWHASNKRWSEDHR  119

Query  119  HRVLKSLEDNIFVAIGKRNIAELKTRDLLEPIKAVEMSGRLEVAARLQQRVTAIMRYAVQ  178
             RVL+ LE  IF  IG  +I +LKT +LL PIK V+ SG+ +VA RLQQRVTAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQDMAGAVATGKRVHRAALELKRLPEFLERIDDYKGRPltklavkltllvFI  238
            ++ ID NPA DMAGA++T K  H +AL   R+PEFL R+  Y+GR +T++AV L+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWDEIDFENAMWTIPAEREAIEGVKHSHRGSKMRTTHLVPLSRQAIEILKQI  298
            RSSELRFARWDE+DF++++W +PA RE I GV+ S RG KM+  H+VPLSRQA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  YQFSGNHELIFIGDHNPRKPMSENTVNNALRVMGYDTKTEVCGHGFRTMACSSLIESGLW  358
             Q+SG+ EL+F GDH++ K MSENTVN+ALR MGYDTKTEVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SKDAVERQMSHQERNSVRAAYIHKAEHIEERRLMVQWWADYLDASRGGEISPFSFAKISN  418
            S DA+ERQ+SH ERN+VRAAYIH +EH++ERRLMVQWWADYLD  +  +I+P+ +A++ N
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCN  419

171) PC1_0871 in NC_012917


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  392 bits (1473),  Expect = 3e-110, Method: Compositional matrix adjust.
 Identities = 229/416 (56%), Positives = 313/416 (76%), Gaps = 2/416 (0%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGG--KEKKLAFGAYPT  58
            M L    +  AKP DK YK++D+ GLYL + ++GSK W++KYR  +  KE +LAFG  PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLASARKLREEARTILSVGDDPGVKKQHDKQAKKNGNTFEAIARQWVAANIRWSEAHAA  118
            V+LA AR  R+EA+ +L  G DP   +++ +  +  + TFE+IAR+W A+N RWSE H +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLRSLELHVFPLIGNVLVTDLKTANLLIPLRVAEKKGCLETATRIQQRTTVIMRYAVQE  178
            +VLR LEL +FP IG+  + +LKT++LL P++  +  G  + A R+QQR T IMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIASNPANDLCGAITPPPKNHYpalpleklpelleRIEGYSGRLLTRLAVQLNLLIFIR  238
            + I SNPA+D+ GA++     HYPALP  ++PE+L R+ +Y GR++TR+AV+L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWTEIDLDNAMWTLPAQREPIAGVRHSERGAKMKTPHLVPLSKQAVTVLKQLK  298
            SSELRFARW E+D+D+++W +PA+RE I GVR S RG KMK  H+VPLS+QA+ +L QLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  LLSGNGELLFPGDHDARKPMSENTINKALRTMGYDTQVDICGHGFRTIACSALIESGRWS  358
             +SG+ ELLFPGDHDA K MSENT+N ALR+MGYDT+ ++CGHGFRT+A +AL ESG WS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  KDAVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLDACQHQFIPAYRFEK  414
             DA+ERQ+SH ERN+VRAAYIH +EHLDER  M+QWW+DYLD  Q + I +Y + +
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

172) MU9_135 in NC_020418


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  391 bits (1469),  Expect = 6e-110, Method: Compositional matrix adjust.
 Identities = 247/417 (60%), Positives = 328/417 (79%), Gaps = 3/417 (0%)

Query  1    MALTDAKVRAAKPLDKSYKLTDGDGMHLMVHTNGSKYWRLQYRFGG--KQKMLALGVYPD  58
            M L   +V +AKP DK+YK++DG+G+ L V ++GSKYWR++YR  +  K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLaearekrdaarkLIANGFDPSekrkevkeeqqkeFNTFEKVARDWHATNKKWSEGHS  118
            ++LA+AR KRD A+KL+ +G+DP   +KE + E+   + TFE +AR+WHA+NK+WSE+H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY-TFETIAREWHASNKRWSEDHR  119

Query  119  HRVLKSLEDNIFTAIGKRNIAELKTRDLLEPIKAVEMSGRLEVAARLQQRVTAIMRYAVQ  178
             RVL+ LE  IF  IG  +I +LKT +LL PIK V+ SG+ +VA RLQQRVTAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQDMAGAVATGKRVHRAALELKRLPEFLQRIDDYKGRPltklavkltllvFI  238
            ++ ID NPA DMAGA++T K  H +AL   R+PEFL R+  Y+GR +T++AV L+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWDEIDFENAMWTIPAEREAIEGVKHSHRGSKMRTTHLVPLSRQAIEILKQI  298
            RSSELRFARWDE+DF++++W +PA RE I GV+ S RG KM+  H+VPLSRQA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  YQFSGNHELIFIGDHNPRKPMSENTVNNALRVMGYDTKTEVCGHGFRTMACSSLIESGLW  358
             Q+SG+ EL+F GDH++ K MSENTVN+ALR MGYDTKTEVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SKDAVERQMSHQERNSVRAAYIHKAEHIDERRLMVQWWADYLDANLEQTISPFDFAK  415
            S DA+ERQ+SH ERN+VRAAYIH +EH+DERRLMVQWWADYLD    + I+P+++A+
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

173) Dd1591_3702 in NC_012912


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  390 bits (1466),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 240/420 (58%), Positives = 320/420 (77%), Gaps = 5/420 (1%)

Query  1    MALTDVVARTAKPREKAYKLADAHGLYLLVSPNGSKRWYLKYR--FEGKESRIAFGAYPL  58
            M L      TAKP++K+YK+AD+ GLYL VS++GSK W +KYR   + KE R+AFG  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLAKAREKRDEVRLLLSEGIHPTEKREEEKEQAQDAQNTFEKVARDWHRNISQNRWSQT  118
            ++LA+AR KRDE + LL +GI+P   + E + +  +A  TFE +AR+WH   S++RWS+ 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGA-YTFETIAREWH--ASNKRWSED  117

Query  119  HAGRVWRDIERNILPAIGQRHIADLKTKDLLEPLKAVEQNGHLDLASRLRQRVTDIMRYA  178
            H +RV R +E  I+P IG  +I +LKT +LL P+K V+ +G  D+A RL+QRVT IMRYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VQNDLIERNPAQDLTGAIAAPKATHRPALKLDKLPDFLAQIERYkgraltrlalkltlCV  238
            VQND I+ NPA D++GA+++ KA H PAL   ++P+FLA++  Y+GR +TR+A+ L+L  
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  FIRSSELRFARWPEIDFKRAMWTIPPEREAIPGVKHSQRGAKMRSEHLVPLSRQALALLE  298
            F+RSSELRFARW E+DF +++W +P+ RE I GV+ S RG KM+ EH+VPLSRQA+ LLE
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  299  EIKAISGVHELIFPGDHRPTKPMSENTINSALRTMGYDTTTEVCGHGFRTMACSALVESG  358
            ++K ISG  EL+FPGDH +TK MSENT+NSALR+MGYDT TEVCGHGFRTMA +AL ESG
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  359  QWSRDAVERQMSHQERNGVRAAYIHKAEHLEERKLMLQWWADYLDANREEHVVPYEFKNI  418
             WS DA+ERQ+SH ERN VRAAYIH +EHL+ER+LM+QWWADYLD  + EH+ PYE+  +
Sbjct  358  LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

174) A79E_4509 in NC_018522


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  390 bits (1466),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 224/417 (54%), Positives = 318/417 (77%), Gaps = 3/417 (0%)

Query  1    MALTDLAIRHARPLGKAYRLSDCHGLYIQVNPSGSKLWYLKFR--FGNKENRMALGPYPL  58
            M L    +  A+P +K+Y+++D  GLY++V++ GSK W +K+R   ++KE+R+A+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLALAREKQADIRRLILEGINPAekrreekrggePLYTFESVAREWVSSNVNWSAEHKK  118
            ++LA AR K+ + ++L+++GI+P   ++E +      YTFE++AREW +SN  WS +H+ 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLRYFELYVFPTNGSWDITKMKVKDLLVPIKEVEKAGKLDVASRLQQRTACVMRYAVQN  178
            RVLRY+ELY+FP  GS DI ++K  +LL PIK V+ +GK DVA RLQQR + +MRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIDHNPASDLTGAVSTPKVRHHPALDLNLIPDFLERVDDFKGRkltqlavklalllFIR  238
            + ID NPASD++GA+ST K RH PAL  + +P+FL R+  ++GR +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWDEIDLHNAMWTIPAEREPIPGVKYSARGAKMRSPHLVPLSHQAIELLREVR  298
            SSELRFARWDE+D+++++W +PA RE I GV+YS RG KM+  H+VPLS+QA+ LL +++
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  QHCRPGTELVFPGDHNYRKPMSENTINKALRVMGYDTQKDVCGHGFRTMACSALVESGLW  358
            Q    + EL+FPGDH+  K MSENT+N ALR MGYDT+ +VCGHGFRTMA +AL ESGLW
Sbjct  301  QIS-GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SSDAVERQMSHQERKRVRAAYIHKAQHLEERREMMQWWADYLDANRFRHVVPYGFKK  415
            S DA+ERQ+SH ER+ VRAAYIH ++HL+ERR M+QWWADYLD  ++ H+ PY + +
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

175) int in NC_012731


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  390 bits (1466),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 224/417 (54%), Positives = 318/417 (77%), Gaps = 3/417 (0%)

Query  1    MALTDLAIRHARPLGKAYRLSDCHGLYIQVNPSGSKLWYLKFR--FGNKENRMALGPYPL  58
            M L    +  A+P +K+Y+++D  GLY++V++ GSK W +K+R   ++KE+R+A+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLALAREKQADIRRLILEGINPAekrreekrggePLYTFESVAREWVSSNVNWSAEHKK  118
            ++LA AR K+ + ++L+++GI+P   ++E +      YTFE++AREW +SN  WS +H+ 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLRYFELYVFPTNGSWDITKMKVKDLLVPIKEVEKAGKLDVASRLQQRTACVMRYAVQN  178
            RVLRY+ELY+FP  GS DI ++K  +LL PIK V+ +GK DVA RLQQR + +MRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIDHNPASDLTGAVSTPKVRHHPALDLNLIPDFLERVDDFKGRkltqlavklalllFIR  238
            + ID NPASD++GA+ST K RH PAL  + +P+FL R+  ++GR +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWDEIDLHNAMWTIPAEREPIPGVKYSARGAKMRSPHLVPLSHQAIELLREVR  298
            SSELRFARWDE+D+++++W +PA RE I GV+YS RG KM+  H+VPLS+QA+ LL +++
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  QHCRPGTELVFPGDHNYRKPMSENTINKALRVMGYDTQKDVCGHGFRTMACSALVESGLW  358
            Q    + EL+FPGDH+  K MSENT+N ALR MGYDT+ +VCGHGFRTMA +AL ESGLW
Sbjct  301  QIS-GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SSDAVERQMSHQERKRVRAAYIHKAQHLEERREMMQWWADYLDANRFRHVVPYGFKK  415
            S DA+ERQ+SH ER+ VRAAYIH ++HL+ERR M+QWWADYLD  ++ H+ PY + +
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

176) ETEC_3157 in NC_017633


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  390 bits (1468),  Expect = 6e-110, Method: Compositional matrix adjust.
 Identities = 213/392 (55%), Positives = 305/392 (78%), Gaps = 2/392 (0%)

Query  1    MFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCE  58
            ++L V ++GS+YWR++YR  +  KE  LA+GV P V+L++AR+KRDEA+KL+ +G+DP  
Sbjct  26   LYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKT  85

Query  59   QKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLSTP  118
            +++  +       +FE IAR WHASNK+W++ H  +VL+ LE  +FP IG+ DI  L T+
Sbjct  86   EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTS  145

Query  119  DLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPA  178
            +LL P++  +A    ++A RLQQR++A+MRYAVQ++ I  NPA DMAGAL+T K +H PA
Sbjct  146  HLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPA  205

Query  179  LDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAER  238
            L  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+RSSELR+ARW E+D+D+++W +PA R
Sbjct  206  LPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKR  265

Query  239  EPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQTWAGENGLIFTGAHDPRKPISENTV  298
            E + GV++SYRG KM+  H+VPLS+QA+ +L +L+  +G++ L+F G HD+ K +SENTV
Sbjct  266  EEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTV  325

Query  299  NKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAE  358
            N ALR MGYDT  +VCGHGFR+MA +AL ESGLWS DA+ERQ+SH ERN VRAAYIH +E
Sbjct  326  NSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSE  385

Query  359  HLEERRLMLQWWADFLDANREQCISPFEYAKI  390
            HL+ERRLM+QWWAD+LD  + + I+P+EYA++
Sbjct  386  HLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

177) intB in NC_017390


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  390 bits (1468),  Expect = 7e-110, Method: Compositional matrix adjust.
 Identities = 231/402 (58%), Positives = 319/402 (80%), Gaps = 2/402 (0%)

Query  1    MALTDIKIRNTKPSGKAVKLTDGFGMYLLIHPNGSKYWRMQYRFGG--KQKTLALGVYPA  58
            M L   ++  +KP +K+ K++DG G+YL + ++GSKYWRM+YR  +  K+  LA+GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQRRDEAKKLLAKGTDPVVKKQDDKRENSGTFSFESVARQWHAGNKKWSEEYKG  118
            V+L++AR +RDEAKKLL +G DP   +++ + ENSG+++FE++AR+WHA+NK+WSE+ ++
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KILRTLETYLFPVIGNRHIAELKTRDLLVPIKAVEDKGFNEVAMRLQQRTTAIMRYAVLQ  178
            ++LR LE Y+FP IG+ +I +LKT +LL PIK V+  G ++VA RLQQR TAIMRYAV +
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GILDYNPAQEMSGAITTGKRAHRPALPFERYHEFLERIDSYrkrlltrlavkltlltFIR  238
            + +D NPA +M+GA++T K  H PALP  R+ EFL R+ +YR R++TR+AV L+LLTF+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFKKSLWTIPGEREALPGIKNAHRGAKMKTPHLVPLSRQAIAILREIQ  298
            SSELRFARW E+DF KSLW +P+ RE + G++ + RG KMK  H+VPLSRQA+ +L +++
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  EISGDHNFIFIGDHYADKPMSENTVNKALRTMGYDTQKDVCGHGFRTMACSSLIESGKWS  358
            +ISGD +++F GDH A K MSENTVN ALR+MGYDT+ +VCGHGFRTMA ++L ESG WS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  KDAVERQMSHQELNNVRAAYTHQAEHLDERRLMLQWWADFLD  400
             DA+ERQ+SH E NNVRAAY H +EHLDERRLM+QWWAD+LD
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

178) EpC_14570 in NC_012214


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  390 bits (1468),  Expect = 7e-110, Method: Compositional matrix adjust.
 Identities = 231/402 (58%), Positives = 319/402 (80%), Gaps = 2/402 (0%)

Query  1    MALTDIKIRNTKPSGKAVKLTDGFGMYLLIHPNGSKYWRMQYRFGG--KQKTLALGVYPA  58
            M L   ++  +KP +K+ K++DG G+YL + ++GSKYWRM+YR  +  K+  LA+GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQRRDEAKKLLAKGTDPVVKKQDDKRENSGTFSFESVARQWHAGNKKWSEEYKG  118
            V+L++AR +RDEAKKLL +G DP   +++ + ENSG+++FE++AR+WHA+NK+WSE+ ++
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KILRTLETYLFPVIGNRHIAELKTRDLLVPIKAVEDKGFNEVAMRLQQRTTAIMRYAVLQ  178
            ++LR LE Y+FP IG+ +I +LKT +LL PIK V+  G ++VA RLQQR TAIMRYAV +
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GILDYNPAQEMSGAITTGKRAHRPALPFERYHEFLERIDSYrkrlltrlavkltlltFIR  238
            + +D NPA +M+GA++T K  H PALP  R+ EFL R+ +YR R++TR+AV L+LLTF+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEIDFKKSLWTIPGEREALPGIKNAHRGAKMKTPHLVPLSRQAIAILREIQ  298
            SSELRFARW E+DF KSLW +P+ RE + G++ + RG KMK  H+VPLSRQA+ +L +++
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  EISGDHNFIFIGDHYADKPMSENTVNKALRTMGYDTQKDVCGHGFRTMACSSLIESGKWS  358
            +ISGD +++F GDH A K MSENTVN ALR+MGYDT+ +VCGHGFRTMA ++L ESG WS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  KDAVERQMSHQELNNVRAAYTHQAEHLDERRLMLQWWADFLD  400
             DA+ERQ+SH E NNVRAAY H +EHLDERRLM+QWWAD+LD
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

179) Ent638_2887 in NC_009436


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  390 bits (1468),  Expect = 7e-110, Method: Compositional matrix adjust.
 Identities = 231/415 (56%), Positives = 319/415 (77%), Gaps = 2/415 (0%)

Query  1    MALTDVKVRNAKPADKPVKLTDGNGMHLLVQPSGSKYWRLQYRFSG--KQKMLALGVYPE  58
            M L   +V  AKP DK  K++DG G+ L V + GSKYWR++YR ++  K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSearrrreearQLIANNVDPGEKRKTKKIEEKGLLIFETVARDWHSSNRTWSDSHRK  118
            V+L++AR +R+EA++L+ + +DP   +K  + E+ G   FET+AR+WH+SN+ WS+ HR 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  TVLSSLITHVFPVIGKRNITELKTRDLLVPLKKAEATGHLELAARLQQRITAIMRYAVHN  178
             VL  L   +FP IG  +I +LKT +LL P+KK +A+G  ++A RLQQR+TAIMRYAV+N
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ALVDQNPAYDLTGAVTTAKSNHRPAlpleqlpellKRIGTYKGKGITQIAVQLTLLTFIR  238
              +D NPA D++GA++T+K+ H PALP  ++PE+L R+++Y+G+ +T+IAV+L+LLTF+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWSEVNFKNSLWTIPAERQVLDGVKYSGRGSKMKTPHLVPLSKQAVVLLKKLH  298
            SSELRFARW E +F +SLW +PA R+ + GV+YS RG KMK  H+VPLS+QA+VLL +L 
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  AISGENELMFVGFSRDDKPISENTVNKALRTMGYDTKKDVCGHGFRTMACSALIESGLWS  358
             ISG++EL+F G     K +SENTVN ALR+MGYDTK +VCGHGFRTMA +AL ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  RDAVEKQMSHQERNSVRAAYIHKAEHLEERKLMLQWWANYLDTCKEEAITPFTYA  413
             DA+E+Q+SH ERN+VRAAYIH +EHL+ER+LM+QWWA+YLD  + E ITP+ YA
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYA  415

180) KPK_4978 in NC_011283


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  390 bits (1467),  Expect = 9e-110, Method: Compositional matrix adjust.
 Identities = 238/418 (57%), Positives = 331/418 (80%), Gaps = 3/418 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V +AKP  K+YK++DG G+ L V ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrdearKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHS  118
            V+LA+ARA+RDEA+KLL +G+DP  ++K  + E +  A TFE +AR+WHASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
            +RVL+ LE  +F+ IG  +I +LKT +LL PIK V++SG+ +VA RLQQR TAIMR+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRlltqlaveltllvFI  238
            ++ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+  Y GR++T++AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEVDFETAMWTIPGERELLDGVKHSQRGSKMRTPHLVPLSRQALAILEKI  298
            RSSELRFARW E DF+ ++W +P+ RE + GV+ S RG KM+  H+VPLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMNGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLW  358
            K ++G++EL+F GDHD+ K MSENTVN ALR MGYDTKTEVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERSSVRAAYIHKAEHLGERRLMLQWWADYLDANREKIFSPFDYAKI  416
            S DA+ERQ+SH ER++VRAAYIH +EHL+ERRLM+QWWADYLD  +   ++P++YA++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

181) SFV_4227 in NC_008258


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  389 bits (1463),  Expect = 2e-109, Method: Compositional matrix adjust.
 Identities = 229/394 (59%), Positives = 311/394 (79%), Gaps = 3/394 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYR--FDGKEKMLALGKYPE  58
            M L+  +V +AKP  K+YK++DG G+ L V ++GSKYWR++YR   D KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrdearKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHS  118
            V+LA+ARA+RDEA+KLL +G+DP  ++K  + E +  A TFE +AR+WHASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
            +RVL+ LE  +F  IG  +I +LKT +LL PIK V++SG+ +VA RLQQR TAIMR+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKI  298
            RSSELRFARW E+DF+ ++W +P+ RE++ GV+ S RG KM+  H+VPLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERSSVRAAYIHKAEHLGERRLM  392
            S DA+ERQ+SH ER++VRAAYIH +EHL+ERRLM
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLM  393

182) Pecwa_0718 in NC_013421


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  389 bits (1462),  Expect = 2e-109, Method: Compositional matrix adjust.
 Identities = 228/420 (55%), Positives = 314/420 (75%), Gaps = 2/420 (0%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGG--KEKKLAFGAYPT  58
            M L    +  AKP DK YK++D+ GLYL + ++GSK W++KYR  +  KE +LAFG  PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLASARKLREEARTILSAGDDPGVKKQHDKQAKKNGNTFEAIARQWVAANIRWSEAHTD  118
            V+LA AR  R+EA+ +L  G DP   +++ +  +  + TFE+IAR+W A+N RWSE H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLRSLELHVFPLIGNVLVTDLKTANLLIPLRVAEKKGCLETAARIQQRTTVIMRYAVQE  178
            +VLR LEL +FP IG+  + +LKT++LL P++  +  G  + A R+QQR T IMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIASNPANDLYGAITPPPKNHYpalpleklpelleRIEGYSGRLLTRLAVQLNLLIFIR  238
            + I SNPA+D+ GA++     HYPALP  ++PE+L R+ +Y GR++TR+AV+L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWVEIDLDNAMWTLPAQREPIAGVRHSERGAKMKTPHLVPLSKQAVTVLKQLK  298
            SSELRFARW E+D+D+++W +PA+RE I GVR S RG KMK  H+VPLS+QA+ +L QLK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  LLSGNGDLLFPGDHDALKPMSENTINKALRTMGYDTQVDICGHGFRTIACSALIESGRWS  358
             +SG+ +LLFPGDHDA K MSENT+N ALR+MGYDT+ ++CGHGFRT+A +AL ESG WS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  KDAVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLDACQHQFIPAYRFEKSIKV  418
             DA+ERQ+SH ERN+VRAAYIH +EHLDER  M+QWW+DYLD  Q + I +Y + +  ++
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCNI  420

183) ETEC_4481 in NC_017633


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  388 bits (1460),  Expect = 3e-109, Method: Compositional matrix adjust.
 Identities = 213/392 (55%), Positives = 305/392 (78%), Gaps = 2/392 (0%)

Query  1    MFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPEVSLSEARTKRDEARKLISEGIDPCE  58
            ++L V ++GS+YWR++YR  +  KE  LA+GV P V+L++AR+KRDEA+KL+ +GIDP  
Sbjct  26   LYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKT  85

Query  59   QKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTP  118
            +++  +       +FE IAR WHASNK+W++ H  +VL+ LE  +FP IG+ DI  L+T+
Sbjct  86   EQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTS  145

Query  119  DLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPA  178
            +LL P++  +A    ++A RLQQR++A+MRYAVQ++ I  NPA DMAGAL+T K +H PA
Sbjct  146  HLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPA  205

Query  179  LNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAER  238
            L  SR+PE+L+R+ +Y+G+ +TR+AV L+LL F+RSSELR+ARW E+D+D+++W +PA R
Sbjct  206  LPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKR  265

Query  239  EPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTWAGENGLIFTGAHDPRKPISENTV  298
            E + GV++S RG KM+  H+VPLS+QA+ +L +L+  +G++ L+F G HD+ K +SENTV
Sbjct  266  EEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTV  325

Query  299  NKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAE  358
            N ALR MGYDT  +VCGHGFR+MA +AL ESGLWS DA+ERQ+SH ERN VRAAYIH +E
Sbjct  326  NSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSE  385

Query  359  HLEERRLMLQWWADFLDANREQCISPFEYAKI  390
            HL+ERRLM+QWWAD+LD  + + I+P+EYA++
Sbjct  386  HLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

184) SFxv_4606 in NC_017328


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  387 bits (1454),  Expect = 9e-109, Method: Compositional matrix adjust.
 Identities = 228/394 (58%), Positives = 311/394 (79%), Gaps = 3/394 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V +AKP  K+YK++DG G+ L V ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrdearKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHS  118
            V+LA+ARA+RDEA+KLL +G+DP  ++K  + E +  A TFE +AR+WHASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
            +RVL+ LE  +F  IG  +I +LKT +LL PIK V++SG+ +VA RLQQR TAIMR+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKI  298
            RSSELRFARW E+DF+ ++W +P+ RE++ GV+ S RG KM+  H+VPLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERSSVRAAYIHKAEHLGERRLM  392
            S DA+ERQ+SH ER++VRAAYIH +EHL+ERRLM
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLM  393

185) S4839 in NC_004741


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  387 bits (1454),  Expect = 9e-109, Method: Compositional matrix adjust.
 Identities = 228/394 (58%), Positives = 311/394 (79%), Gaps = 3/394 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V +AKP  K+YK++DG G+ L V ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrdearKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHS  118
            V+LA+ARA+RDEA+KLL +G+DP  ++K  + E +  A TFE +AR+WHASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
            +RVL+ LE  +F  IG  +I +LKT +LL PIK V++SG+ +VA RLQQR TAIMR+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKI  298
            RSSELRFARW E+DF+ ++W +P+ RE++ GV+ S RG KM+  H+VPLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERSSVRAAYIHKAEHLGERRLM  392
            S DA+ERQ+SH ER++VRAAYIH +EHL+ERRLM
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLM  393

186) SF4224 in NC_004337


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  387 bits (1454),  Expect = 9e-109, Method: Compositional matrix adjust.
 Identities = 228/394 (58%), Positives = 311/394 (79%), Gaps = 3/394 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V +AKP  K+YK++DG G+ L V ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrdearKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHS  118
            V+LA+ARA+RDEA+KLL +G+DP  ++K  + E +  A TFE +AR+WHASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
            +RVL+ LE  +F  IG  +I +LKT +LL PIK V++SG+ +VA RLQQR TAIMR+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKI  298
            RSSELRFARW E+DF+ ++W +P+ RE++ GV+ S RG KM+  H+VPLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLW  358
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERSSVRAAYIHKAEHLGERRLM  392
            S DA+ERQ+SH ER++VRAAYIH +EHL+ERRLM
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLM  393

187) Dd703_3541 in NC_012880


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  386 bits (1450),  Expect = 2e-108, Method: Compositional matrix adjust.
 Identities = 237/420 (57%), Positives = 317/420 (76%), Gaps = 5/420 (1%)

Query  1    MALTDVVARTAKPREKAYKLADAHGLYLLVSPNGSKRWYLKYR--FEGKESRIAFGAYPL  58
            M L      TAKP++K+YK+AD+ GLYL VS++GSK W +KYR   + KE R+AFG  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLAKAREKRDEVRLLLSEGIHPTEKREEEKEQAQDALNTFEKVARDWHRNISQNRWSQT  118
            ++LA+AR KRDE + LL +GI+P   + E + +  +A  TFE +AR+WH   S++RWS+ 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY-TFETIAREWH--ASNKRWSED  117

Query  119  HAGRVWRDMERNILPAIGQRHIADLKTKDLLEPLKAVEQNGHLDLASRLRQRVTDIMRYA  178
            H +RV R +E  I+P IG  +I +LKT +LL P+K V+ +G  D+A RL+QRVT IMRYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VQNDLIERNPAQDLTGAIAAPKATHRPALKLDKLPDFLARIECYkgraltrlalkltlCV  238
            VQND I+ NPA D++GA+++ KA H PAL   ++P+FLAR+  Y+GR +TR+A+ L+L  
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  FIRSSELRFARWPEIDFKRAMWTIPPEREAIPGVKHSQRGAKMRSEHLVPLSRQALALLE  298
            F+RSSELRFARW E+DF +++W +P+ RE I GV+ S RG KM+ EH+VPLSRQA+ LLE
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  299  EIKAISGAHELVFPGDHRPIKPMSENTINSALRTMGYDTTTEVCGHGFRTMACSALVESG  358
            ++K ISG  EL+FPGDH + K MSENT+NSALR+MGYDT TEVCGHGFRTMA +AL ESG
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  359  QWSRDAVARQMSHQEHNGVRAAYIHKAEHLEERKLMLQWWADYLDANREEYVVPYEFKNI  418
             WS DA+ RQ+SH E+N VRAAYIH +EHL+ER+LM+QWWADYLD  + E + PYE+  +
Sbjct  358  LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

188) MU9_117 in NC_020418


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  383 bits (1441),  Expect = 9e-108, Method: Compositional matrix adjust.
 Identities = 245/417 (59%), Positives = 327/417 (79%), Gaps = 3/417 (0%)

Query  1    MALTDAKVRAAKPLDKSYKLTDGDGMHLMVHTNGSKYWRLQYRFGG--KQKMLALGVYPD  58
            M L   +V +AKP DK+YK++DG+G+ L V ++GSKYWR++YR  +  K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLaearekrdaarkLIANGFDPSekrkevkeeqqkeFNTFEKVARDWHATNKKWSEGHS  118
            ++LA+AR KRD A+KL+ +G+DP   +KE + E+   + TFE +AR+WHA+NK+WSE+H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY-TFETIAREWHASNKRWSEDHR  119

Query  119  HRVLKSLEDNIFAAIDKRNIAELKTRDLLEPIKAVEMSGRLGVAARLQQRVTGIMRYAVQ  178
             RVL+ LE  IF+ I+  +I +LKT +LL PIK V+ SG+ +VA RLQQRVT+IMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQDMAGAVATGKRVHRAALELKRLPEFLQRIDDYKGRPltklavkltllvFI  238
            ++ ID NPA DMAGA++T K  H +AL   R+PEFL R+  Y+GR +T++AV L+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWDEIDFENAMWTIPAEREAIEGVKHSHRGSKMRTPHLVPLSRQAIEILKQI  298
            RSSELRFARWDE+DF++++W +PA RE I GV+ S RG KM+  H+VPLSRQA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  YQFSGNHELIFIGDHNPRKPMSENTVNNALRVMGYDTKTEVCGHGFRTMACSSLIESGLW  358
             Q+SG+ EL+F GDH++ K MSENTVN+ALR MGYDTKTEVCGHGFRTMA ++L ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SKDAVERQMSHQERNSVRAAYIHKAEHIEERRLMVQWWADFLFENTHALITPYEFAK  415
            S DA+ERQ+SH ERN+VRAAYIH +EH++ERRLMVQWWAD+L       ITPYE+A+
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

189) Y11_15011 in NC_017564


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  382 bits (1437),  Expect = 2e-107, Method: Compositional matrix adjust.
 Identities = 210/413 (51%), Positives = 304/413 (74%), Gaps = 3/413 (0%)

Query  1    MSLNGSKIRNLKPSAKPFKVSDSHGLYLLVNPSGSRLWYLKYR--INRKESRLGLGAYPD  58
            M LN+ ++   KP  K +K++D+ GLYL V++ GS+ W +KYR   ++KE RL++G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQQRDGIRKLLVQNINPAQQRSAERTTSSPEKTFKHVALEWHKSNRTWSENHAA  118
            V+LA+AR +RD  +KLLVQ I+P  ++   ++ +S   TF  +A EWH SN+ WSE+H +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASMNNHIFPIIGHLPVSELKPRHFIDLLKGIEKKGSLEVAARTRQHMCSIMRHAVHQ  178
            R+L  ++  IFP IG   + +LK  H++  +K ++  G  +VA R +Q++ +IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDNNPAANLDGIIAPPVKRHYPALPLEQLSELLTRIEDYQQGRELTRLAVSLTLHLFI  238
            + ID+NPA+++ G ++    RHYPALP  +++E+L+R+  Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFRNKIWTIPATREAIPGVRYSGRGAKMRTPHIVPLSHQSITILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS+Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  REISGHQELVFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLW  358
            ++ISG++EL+FPGDH++ K M ENTVN ALR MGYDTK E+CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SQDAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLNACREAYIPPY  411
            S+DA+ERQ+SH ERN+VRAAYIH +E LD R+ M+QWW+DYL+  +   I PY
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

190) Pecwa_0447 in NC_013421


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  378 bits (1421),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 239/420 (57%), Positives = 317/420 (76%), Gaps = 5/420 (1%)

Query  1    MALTDVVARTAKPREKAYKLADAHGLYLLVSPNGSKRWYLKYR--FEGKESRIAFGAYPL  58
            M L      TAKP++K+YK+AD+ GLYL VS++GSK W +KYR   + KE R+AFG  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLAKAREKRDEIRLLLLEGIHPTekreeekeqaqeaLNTFAKVAQDWHRNISQNRWSET  118
            ++LA+AR KRDE + LL++GI+P   + E + +   A  TF  +A++WH   S++RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY-TFETIAREWH--ASNKRWSED  117

Query  119  HAGRVWRDMERNLLPAIGHRHIADLKTKDLLEPLKAVEQNGHLDLASRLRQRVTDIMRYA  178
            H +RV R +E  ++P IG  +I +LKT +LL P+K V+ +G  D+A RL+QRVT IMRYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VQNDLIERNPAQDLSGAIAAPKATHRPALKLNKLPDFLARIERHKGrtltrlalkltlCV  238
            VQND I+ NPA D++GA+++ KA H PAL  +++P+FLAR+   +GR +TR+A+ L+L  
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  FIRSSELRFARWPEIDFKRAMWTIPAEREAIPGVKHSQRGAKMRSEHLVPLSRQALALLE  298
            F+RSSELRFARW E+DF +++W +PA RE I GV+ S RG KM+ EH+VPLSRQA+ LLE
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  299  EIKAISGAHELIFPGDRRPTKPMSENTVNNALRTMGYDTTIEVCGHGFRTMACSALVESG  358
            ++K ISG  EL+FPGD+ +TK MSENTVN+ALR+MGYDT  EVCGHGFRTMA +AL ESG
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  359  QWSRDAVERQMSHQERNGVRAAYIHKAEHLDERRLMLQWWADYLDANREEYVVPYEFKRA  418
             WS DA+ERQ+SH ERN VRAAYIH +EHLDERRLM+QWWADYLD  + E + PYE+ R 
Sbjct  358  LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

191) Dd586_2635 in NC_013592


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  377 bits (1417),  Expect = 8e-106, Method: Compositional matrix adjust.
 Identities = 211/417 (51%), Positives = 307/417 (74%), Gaps = 3/417 (0%)

Query  1    MSLNDSKIRNLKPSVKPFKVSDSHGLYLLVNPGGSRLWYLKYR--INKKESRLGLGAYPD  58
            M LN  ++   KP  K +K++D+ GLYL V++ GS+ W +KYR   +KKE RL++G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQQRDGIRKLLVQNINPAQQRSAERATALPEETFKSVALSWHKSNKAWSENHAV  118
            V+LA+AR +RD  +KLLVQ I+P  ++   +A      TF ++A  WH SNK WSE+H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASMNNHIFPIIGHLPVSELKPRHFIDllkgiekkglleVAARSRQHMCNIMRHAVHQ  178
            R+L  ++  IFP IG   + +LK  H++  +K ++  G  +VA R +Q++  IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDNNPAANLDGIIAPPVKRHYPALPLERLSELLTRIGDYKQGRELTRLAVSLTLHLFI  238
            + ID+NPA+++ G ++    RHYPALP  R++E+L+R++ Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFAHWSEIDFKNNIWTIPANREAIPGVRYSGRGAKMRTPHIVPLSSQSITILKQI  298
            RSSELRFA+W E+DF +++W +PA+RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  REISGHQELVFPGDHNPYKPMCENTINKALRLMGYDTKSDICGHGFRAMACSALMESGLW  358
            ++ISG++EL+FPGDH++ K M ENT+N ALR MGYDTK+++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AQDAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDTNREEYVAPYIYAQ  415
            ++DA+ERQ+SH ERN+VRAAYIH +E LD R+ M+QWW+DYLD  + E ++PY YA+
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

192) W5S_0459 in NC_017845


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  375 bits (1411),  Expect = 2e-105, Method: Compositional matrix adjust.
 Identities = 242/420 (58%), Positives = 318/420 (76%), Gaps = 5/420 (1%)

Query  1    MALTDVVARTAKPREKAYKLADAHGLYLLVSPNGSKRWYLKYR--FEGKESRIAFGAYPL  58
            M L      TAKP++K+YK+AD+ GLYL VS++GSK W +KYR   + KE R+AFG  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAKAREKRDEIRLLLLEGIHPTekreeekeqaqeaLNTFEKVAQDWHRNISQNRWSET  118
            V+LA+AR KRDE + LL++GI+P   + E + +   A  TFE +A++WH   S++RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY-TFETIAREWH--ASNKRWSED  117

Query  119  HAGRVWRDMERNLLPAIGHRHIADLKTKDLLEPLKVVEQNGHLDLASRLRQRVTDIMRYA  178
            H +RV R +E  ++P IG  +I +LKT +LL P+K V+ +G  D+A RL+QRVT IMRYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VQNDLIERNPAQDLSGAIAAPKATHRPALKLNTLPDFLARIERHkgraltrlalkltlCV  238
            VQND I+ NPA D++GA+++ KA H PAL  + +P+FLAR+   +GR +TR+A+ L+L  
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  FIRSSELRFARWPEIDFKRAMWTIPAEREAIPGVKHSQRGAKMRSEHLVPLSRQALALLE  298
            F+RSSELRFARW E+DF +++W +PA RE I GV+ S RG KM+ EH+VPLSRQA+ LLE
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  299  EIKAISGAHELIFPGDRRPTKPMSENTVNNALRTMGYDTTTEVCGHGFRTMACSALVESG  358
            ++K ISG  EL+FPGD+ +TK MSENTVN+ALR+MGYDT TEVCGHGFRTMA +AL ESG
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  359  QWSRDAVERQMSHQERNGVRAAYIHKAEHLDERRLMLQWWADYLDANREEYVVPYEFKNV  418
             WS DA+ERQ+SH ERN VRAAYIH +EHLDERRLM+QWWADYLD  + E + PYE+  V
Sbjct  358  LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

193) Dd703_3034 in NC_012880


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  372 bits (1397),  Expect = 3e-104, Method: Compositional matrix adjust.
 Identities = 224/415 (54%), Positives = 302/415 (73%), Gaps = 3/415 (0%)

Query  2    LTDSKVRSAKPLAKSYKLTDSHGLYLTVSASGAKLWYFRYRLGG--KESRLAFGPYPQTT  59
            L   +V +AKP  K+YK++D+ GLYL VSA G+K W  +YR  +  KE RLAFG  P  T
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  60   LAEAREKRDVARKLLASGISPSQLRKANNPAVEESRTFQYVAQAWHTSSLKLWSEAHADK  119
            LA+AR KRD A+KLL  GI P   +K  ++    + TF+ +A+ WH+S+ K WSE H  +
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASN-KRWSEDHRSR  121

Query  120  ILTCLKRYVFPTIGAMDIAQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQG  179
            +L  L  Y+FP IG+ DI Q+ T HL   +K +D  G HDVA R++Q++T IMR AVQ++
Sbjct  122  VLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQND  181

Query  180  VIKYNPAYDLDGVVTPVVTQHHPAlplkrlpellekMENYKGRMLTRLALELNLHVFLRS  239
             I  NPA D+ G ++   ++H PALP  R+PE+L ++  Y+GR++TR+A+EL+L  F+RS
Sbjct  182  YIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRS  241

Query  240  SELRFARWDEFNLKAHIWSVPAQREAVNGVRFSERGAKMKDEHLVPLSRQAVALLKQIQA  299
            SELRFARWDEF++   +W VPA+RE ++GVR+S RG KMK+EH+VPLSRQA+ LL Q++ 
Sbjct  242  SELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQ  301

Query  300  LSGESVFVFPGAHTLNKPMSENTVNKALRVIGYDTKTEICGHGFRTMACSALNESGRWSK  359
            +SG+  ++FPG H   K MSENTVN ALR +GYDTKTE+CGHGFRTMA +AL ESG WS 
Sbjct  302  ISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSD  361

Query  360  DAIERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYAR  414
            DAIERQ+SH ERN VRAAY+H +EHL+ R  M+QWW+DYLD+ +   ++PY YAR
Sbjct  362  DAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

194) int in NC_003198


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  371 bits (1394),  Expect = 5e-104, Method: Compositional matrix adjust.
 Identities = 227/415 (55%), Positives = 307/415 (74%), Gaps = 3/415 (0%)

Query  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYR--FEGKENRLAFGPYPQVT  59
            L   ++ +AKP  K+YK++D+ GLYL VS+ GSK W  +YR   + KE+RLAFG  P VT
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  60   laearekrdaarkllVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADK  119
            LA+AR KRD A+KLLV G+ P   +K  +A   G+ TF+ IA  WH+S  K WSEDH  +
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASN-KRWSEDHRSR  121

Query  120  ILTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQG  179
            +L  L  Y+FP+IG+ DI ++ T HL   +K +D  G HDVA R++Q++T IMR AVQ++
Sbjct  122  VLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQND  181

Query  180  TIKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRS  239
             I  NPA D+ G ++   ++H PALP  R+PE+L ++ +Y+GR +TR+A+EL+L  F+RS
Sbjct  182  YIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRS  241

Query  240  SELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKE  299
            SELR+ARWDEF++   +W VPAKRE +K VR+S RG KMK+EH+VPLS QA+ LLEQ+K+
Sbjct  242  SELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQ  301

Query  300  ITGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSK  359
            I+G+  ++F+G H   K MSENT+N ALR +GYDTKTEVCGHGFRTMA +AL ES+LWS 
Sbjct  302  ISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSD  361

Query  360  DAIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYAR  414
            DAIERQ+SH ERN VRAAY+H +EHL+ R  M+QWW+DYLD+ +   ++PY YAR
Sbjct  362  DAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

195) STBHUCCB_46270 in NC_016832


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  371 bits (1394),  Expect = 5e-104, Method: Compositional matrix adjust.
 Identities = 227/415 (55%), Positives = 307/415 (74%), Gaps = 3/415 (0%)

Query  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYR--FEGKENRLAFGPYPQVT  59
            L   ++ +AKP  K+YK++D+ GLYL VS+ GSK W  +YR   + KE+RLAFG  P VT
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  60   laearekrdaarkllVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADK  119
            LA+AR KRD A+KLLV G+ P   +K  +A   G+ TF+ IA  WH+S  K WSEDH  +
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASN-KRWSEDHRSR  121

Query  120  ILTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQG  179
            +L  L  Y+FP+IG+ DI ++ T HL   +K +D  G HDVA R++Q++T IMR AVQ++
Sbjct  122  VLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQND  181

Query  180  TIKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRS  239
             I  NPA D+ G ++   ++H PALP  R+PE+L ++ +Y+GR +TR+A+EL+L  F+RS
Sbjct  182  YIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRS  241

Query  240  SELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKE  299
            SELR+ARWDEF++   +W VPAKRE +K VR+S RG KMK+EH+VPLS QA+ LLEQ+K+
Sbjct  242  SELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQ  301

Query  300  ITGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSK  359
            I+G+  ++F+G H   K MSENT+N ALR +GYDTKTEVCGHGFRTMA +AL ES+LWS 
Sbjct  302  ISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSD  361

Query  360  DAIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYAR  414
            DAIERQ+SH ERN VRAAY+H +EHL+ R  M+QWW+DYLD+ +   ++PY YAR
Sbjct  362  DAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

196) int in NC_004631


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  371 bits (1394),  Expect = 5e-104, Method: Compositional matrix adjust.
 Identities = 227/415 (55%), Positives = 307/415 (74%), Gaps = 3/415 (0%)

Query  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYR--FEGKENRLAFGPYPQVT  59
            L   ++ +AKP  K+YK++D+ GLYL VS+ GSK W  +YR   + KE+RLAFG  P VT
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  60   laearekrdaarkllVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADK  119
            LA+AR KRD A+KLLV G+ P   +K  +A   G+ TF+ IA  WH+S  K WSEDH  +
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASN-KRWSEDHRSR  121

Query  120  ILTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQG  179
            +L  L  Y+FP+IG+ DI ++ T HL   +K +D  G HDVA R++Q++T IMR AVQ++
Sbjct  122  VLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQND  181

Query  180  TIKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRS  239
             I  NPA D+ G ++   ++H PALP  R+PE+L ++ +Y+GR +TR+A+EL+L  F+RS
Sbjct  182  YIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRS  241

Query  240  SELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKE  299
            SELR+ARWDEF++   +W VPAKRE +K VR+S RG KMK+EH+VPLS QA+ LLEQ+K+
Sbjct  242  SELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQ  301

Query  300  ITGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSK  359
            I+G+  ++F+G H   K MSENT+N ALR +GYDTKTEVCGHGFRTMA +AL ES+LWS 
Sbjct  302  ISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSD  361

Query  360  DAIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYAR  414
            DAIERQ+SH ERN VRAAY+H +EHL+ R  M+QWW+DYLD+ +   ++PY YAR
Sbjct  362  DAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

197) TY21A_22260 in NC_021176


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  370 bits (1390),  Expect = 1e-103, Method: Compositional matrix adjust.
 Identities = 226/415 (55%), Positives = 307/415 (74%), Gaps = 3/415 (0%)

Query  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYR--FEGKENRLAFGPYPQVT  59
            L   ++ +AKP  K+YK++D+ GLYL VS+ GSK W  +YR   + KE+RLAFG  P VT
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  60   laearekrdaarkllVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADK  119
            LA+AR KRD A+KLLV G+ P   +K  +A   G+ TF+ IA  WH+S  K WSEDH  +
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASN-KRWSEDHRSR  121

Query  120  ILTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQG  179
            +L  L  Y+FP+IG+ DI ++ T HL   +K +D  G HDVA R++Q++T IMR AVQ++
Sbjct  122  VLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQND  181

Query  180  TIKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRS  239
             I  NPA D+ G ++   ++H PALP  R+PE+L ++ +Y+GR +TR+A+EL+L  F+RS
Sbjct  182  YIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRS  241

Query  240  SELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKE  299
            SELR+ARWDEF++   +W VPAKRE +K VR+S RG KMK+EH+VPLS QA+ LLEQ+K+
Sbjct  242  SELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQ  301

Query  300  ITGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSK  359
            I+G+  ++F+G H   K MSENT+N ALR +GYDTKTEVCGHGFRTMA +AL ES+LWS 
Sbjct  302  ISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSD  361

Query  360  DAIERQMSHKERNGMRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYAR  414
            DAIERQ+SH ERN +RAAY+H +EHL+ R  M+QWW+DYLD+ +   ++PY YAR
Sbjct  362  DAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

198) Dda3937_00080 in NC_014500


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  369 bits (1385),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 209/419 (50%), Positives = 304/419 (73%), Gaps = 3/419 (0%)

Query  1    MSLNDSKIRNLKPSAKPFKVSDSHGLYLLVNPGGSRLWYLKYR--INRKESRLGLGTYPD  58
            M LN  ++   KP  K +K++D+ GLYL V++ GS+ W +KYR   ++KE RL++G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQQRDGIRKLLAQNINPAHQRAAEKASRSPEKSFRDVALDWHKSNRTWSENHAT  118
            V+LA+AR +RD  +KLL Q I+P  ++   +A  S   +F  +A +WH SN+ WSE+H +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASMNNYLFPVIGHLPVTELKPRHFIDLLRGIEKKGLLEVASRTRQHLCNIMRHAVHQ  178
            R+L  ++ Y+FP IG   + +LK  H++  ++ ++  G  +VA R +Q++  IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIEHNPAANLDGIIATPVKRHYPAlpleqlpellTRIEDYRQGRELTRLAVSLTLHLFI  238
            + I+ NPA+++ G ++T   RHYPALP  ++PE+L+R+  YR GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFRNNIWTIPATRKAIPGVRYSGRGAKMRTPHIVPLSRQTIAILRQI  298
            RSSELRFARW E+DF +++W +PA R  I GVRYS RG KM+  HIVPLSRQ++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  QEISRHQVLIFPGAHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLW  358
            ++IS ++ L+FPG H++ K M ENTVN ALR MGYDTK E+CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SQDAVERQMSHQERNSVRAAYIHKAQYLDARKAMMQWWSDYLDMNREGYVAPYVYAREC  417
            S+DA+ERQ+SH ERN+VRAAYIH ++ LD R+ M+QWW+DYLD+ +   ++PY YAR C
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVC  418

199) PC1_0858 in NC_012917


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  366 bits (1376),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 221/416 (54%), Positives = 303/416 (73%), Gaps = 3/416 (0%)

Query  1    MLTDSKVRSAKPLAKSYKLTDSQGLYLTVSTSSAKLWYFRYRFGG--KENRLAFGPYPQI  58
             L   +V +AKP  K+YK++D+ GLYL VS+ ++K W  +YR  +  KE+RLAFG  P +
Sbjct  2    KLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTV  61

Query  59   TlaearekrdaarkllaSGISPSQLRKSNNPAVDESHTFQYVTMAWHSSCLKLWSEAHAD  118
            TLA+AR KRD A+KLL  GI P   +K  ++    + TF+ ++  WH+S  K WSE H  
Sbjct  62   TLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASN-KRWSEDHRS  120

Query  119  KILTCLKRYVFPAIGAMDIVQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQ  178
            ++L  L  Y+FP IG+ DI Q+ T HL   +K +D  G HDVA R++Q++T IMR AVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GVIKYNPAYDLDGVVTPVATQHHPALPLKRLPELLGKMENYKGRMLTRMALELNLHVFLR  238
            + I  NPA D+ G ++   ++H PALP  R+PE+L+++  Y+GR++TR+A+EL+L  F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWDEFNLKAHIWSVPAQREAVNGVRFSERGAKMKDEHLVPLSRQAVALLKQIQ  298
            SSELRFARWDEF++   +W VPA+RE ++GVR+S RG KMK+EH+VPLSRQA+ LL Q++
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  AISGESVFVFPGAHTLNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESGRWS  358
             ISG+  ++FPG H   K MSENT+N ALR +GYDTKTEVCGHGFRTMA +AL ESG WS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  KDAIERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSNYLDVNRDGYVAPYIYAR  414
             DAIERQ+SH ERN VRAAY+H +EHL+ R  M+QWW++YLD+ +   ++PY YAR
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

200) Pecwa_3419 in NC_013421


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  365 bits (1371),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 223/416 (54%), Positives = 301/416 (73%), Gaps = 3/416 (0%)

Query  1    MLTDSKVRSAKPLAKSYKLTDSQGLYLTVSTSGAKLWYFRYRFGG--KENRLAFGPYPQT  58
             L   +V +AKP  K+YK++D+ GLYL VS+ G+K W  +YR  +  KE+RLAFG  P  
Sbjct  2    KLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTV  61

Query  59   TlaearekrdaarkllaSGISPSQLRKSNNPAVDESRTFQYVATAWHTSSLKLWSDAHAD  118
            TLA+AR KRD A+KLL  GI P   +K  ++    + TF+ +A  WH+S+ K WS+ H  
Sbjct  62   TLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASN-KRWSEDHRS  120

Query  119  KILICLKRYVFPAIGAMDIAQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQ  178
            ++L  L  Y+FP IG+ DI Q+ T HL   +K +D  G HDVA R++Q++T IMR AVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GVIKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLVKMENYKGRELTRLALELNLHVFLR  238
            + I  NPA D+ G ++   ++H PALP  R+PE+L ++  Y+GR +TR+A+EL+L  F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWDEFNLKAHIWSVPAQREAVKGVRFSERGAKMKDEHLVPLSRQAVALLKQIQ  298
            SSELRFARWDEF++   +W VPA+RE +KGVR+S RG KMK+EH+VPLSRQA+ LL Q++
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  AISGESVFVFPGAHTLNKPMSENTINKALRVIGYDTKTEICGHGFRTMACSALNESGRWS  358
             ISG+  ++FPG H   K MSENT+N ALR +GYDTKTE+CGHGFRTMA +AL ESG WS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  KDAIERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYAR  414
             DAIERQ+SH ERN VRAAY+H +EHL+ R  M+QWW+DYLD+ +   ++PY YAR
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

201) Dd586_1478 in NC_013592


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  364 bits (1367),  Expect = 7e-102, Method: Compositional matrix adjust.
 Identities = 207/418 (50%), Positives = 304/418 (73%), Gaps = 3/418 (0%)

Query  1    MSINDSKIRNLKPSTKPYKVSDSHGLYLLINPGGSRLWYLKYR--INRKESRLGLGTYPD  58
            M +N  ++   KP  K YK++D+ GLYL +++ GS+ W +KYR   ++KE RL++G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQQRDSIRKLLAQNINPAHQQAAEKAPRSPEKSFRDVALDWHKSNRTWSESHAT  118
            V+LA+AR +RD  +KLL Q I+P  +Q   +A  S   +F  +A +WH SN+ WSE H +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASMNNHLFPVIGHLPVTELKPRHFISLLRGIEKKGLLEVAARTRQHLCNIMRHAVHQ  178
            R+L  ++  +FP IG   + +LK  H+++ ++ ++  G  +VA R +Q++  IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIEHNPAANLDGIIASPVKRHYPAlpleqlpellTRIEDYRQGRELTRLAVSLTLHLFI  238
            + I+ NPA+++ G +++   RHYPALP  ++PE+L+R+  YR GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFRNHIWTIPATRKAIPGVRYSGRGAKMRTPHIVPLSRQAIAILRQI  298
            RSSELRFARW E+DF + +W +PA R  I GVRYS RG KM+  HIVPLSRQA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  QEISGHQVLIFPGAHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESSLW  358
            ++ISG++ L+FPG H++ K M ENTVN ALR MGYDTK E+CGHGFR+MA +AL ES+LW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AQDAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDMNRENYVAPYVYAQV  416
            ++DA+ERQ+SH ERN+VRAAYIH +E LD R+ M+QWW+DYLD+ + + ++PY YA+V
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

202) M621_16100 in NC_021659


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  361 bits (1355),  Expect = 6e-101, Method: Compositional matrix adjust.
 Identities = 209/423 (50%), Positives = 301/423 (72%), Gaps = 5/423 (1%)

Query  1    MSLNDTKIRSLKPSAKPFKISDSHGLYLLVNPGGSRLWYLKYR--INRKESRLGLGAYPD  58
            M LN  ++ + KP  K +K++D+ GLYL V++ GS+ W +KYR   ++KE RL++G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQQRDGIRKLLAQNINPAQQRSAERATALLEETFKSVALSWHKSNRTWSENHAT  118
            V+LA+AR +RD  +KLL Q I+P  ++   +A      TF ++A  WH SN+ WSE+H +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASMNNHIFPIIGHLPVSELKPRHFIDLLKGIEQKGLLEVAARTRQHMCNIMRHAVHQ  178
            R+L  ++  IFP IG   + +LK  H++  +K ++  G  +VA R +Q++  IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIKHNPAANLDGIIAPPVKRHYPAlpleqlpellTRIKDYKQGRELTRLAVSLTLHLFI  238
            + I  NPA+++ G ++    RHYPALP  ++PE+L+R+  Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFKNRIWTIPATRESIPGVRYSGRGAKMRIPHIVPLSCQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  REISGHQVLVFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLW  358
            ++ISG++ L+FPGDH++ K M ENTVN ALR MGYDTK E+CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AQDAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDMCRKEYAPPYICGKEIS  418
            ++DA+ERQ+SH ERN+VRAAYIH +E LD R+ M+QWW+DYLD+ + E   PY  ++   
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR--V  417

Query  419  CTI  421
            C I
Sbjct  418  CNI  420

203) STBHUCCB_9400 in NC_016832


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  360 bits (1353),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 208/423 (50%), Positives = 301/423 (72%), Gaps = 10/423 (2%)

Query  1    MSLTDIKAKNAKPLEKEYKLTDGFGMFLRVTPKGSKYWQMAYR--FEGKQKLFSIGVYPA  58
            M L   +   AKP +K YK++DG G++L V++KGSKYW+M YR   + K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQRRDEARRLLAQGIDPNAKKQAEVKELKAKRDNTRSFRTVAKAWFSTKTKWSD  118
            V+L++AR +RDEA++LL QGIDP++    E KE +A    + +F T+A+ W +++ +WS+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKT----EQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYGDAVWKRLETYVFPVIGDKDVAELDTGDLLVPVKKVEALGYLEVAMRIQQYITAILRH  178
            D    V + LE Y+FP IG  D+ +L T++LL P+KKV+A G  +VA R+QQ +TAI+R 
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKLIRHNPAYDMEGAVQKPQTEHRPALELEEIPQLLNKIAEYKGRRLTILAIQLNLM  238
            AVQ+  I  NPA DM GA+   ++ H PAL    +P++L ++A Y+GR +T +A++L+L+
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  239  IFIRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRKHLVPLCKQAMKIL  298
             F+RSSELRFARW E+DF   LW +P +RE I  V+ S RG KMK  H+VPL +QAM +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  299  KEIRQLTYEEGHDDGLIFTGCYDSFKPMSENTINKALRNMGYDTKQDICGHGFRTLACSA  358
             +++Q++     D  L+F G  D+ K MSENT+N ALR MGYDTK ++CGHGFRT+A +A
Sbjct  297  EQLKQIS----GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGA  352

Query  359  LIESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDANSNDMVRPF  418
            L ESGLWS+DA+E Q+SH E N+VRAAY H + HLD+RRLM+QWWAD+LD    + + P+
Sbjct  353  LGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

Query  419  EFD  421
            E+ 
Sbjct  413  EYA  415

204) TY21A_04490 in NC_021176


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  360 bits (1353),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 208/423 (50%), Positives = 301/423 (72%), Gaps = 10/423 (2%)

Query  1    MSLTDIKAKNAKPLEKEYKLTDGFGMFLRVTPKGSKYWQMAYR--FEGKQKLFSIGVYPA  58
            M L   +   AKP +K YK++DG G++L V++KGSKYW+M YR   + K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQRRDEARRLLAQGIDPNAKKQAEVKELKAKRDNTRSFRTVAKAWFSTKTKWSD  118
            V+L++AR +RDEA++LL QGIDP++    E KE +A    + +F T+A+ W +++ +WS+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKT----EQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYGDAVWKRLETYVFPVIGDKDVAELDTGDLLVPVKKVEALGYLEVAMRIQQYITAILRH  178
            D    V + LE Y+FP IG  D+ +L T++LL P+KKV+A G  +VA R+QQ +TAI+R 
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKLIRHNPAYDMEGAVQKPQTEHRPALELEEIPQLLNKIAEYKGRRLTILAIQLNLM  238
            AVQ+  I  NPA DM GA+   ++ H PAL    +P++L ++A Y+GR +T +A++L+L+
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  239  IFIRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRKHLVPLCKQAMKIL  298
             F+RSSELRFARW E+DF   LW +P +RE I  V+ S RG KMK  H+VPL +QAM +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  299  KEIRQLTYEEGHDDGLIFTGCYDSFKPMSENTINKALRNMGYDTKQDICGHGFRTLACSA  358
             +++Q++     D  L+F G  D+ K MSENT+N ALR MGYDTK ++CGHGFRT+A +A
Sbjct  297  EQLKQIS----GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGA  352

Query  359  LIESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDANSNDMVRPF  418
            L ESGLWS+DA+E Q+SH E N+VRAAY H + HLD+RRLM+QWWAD+LD    + + P+
Sbjct  353  LGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

Query  419  EFD  421
            E+ 
Sbjct  413  EYA  415

205) t05065 in NC_004631


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  360 bits (1353),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 208/423 (50%), Positives = 301/423 (72%), Gaps = 10/423 (2%)

Query  1    MSLTDIKAKNAKPLEKEYKLTDGFGMFLRVTPKGSKYWQMAYR--FEGKQKLFSIGVYPA  58
            M L   +   AKP +K YK++DG G++L V++KGSKYW+M YR   + K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQRRDEARRLLAQGIDPNAKKQAEVKELKAKRDNTRSFRTVAKAWFSTKTKWSD  118
            V+L++AR +RDEA++LL QGIDP++    E KE +A    + +F T+A+ W +++ +WS+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKT----EQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYGDAVWKRLETYVFPVIGDKDVAELDTGDLLVPVKKVEALGYLEVAMRIQQYITAILRH  178
            D    V + LE Y+FP IG  D+ +L T++LL P+KKV+A G  +VA R+QQ +TAI+R 
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKLIRHNPAYDMEGAVQKPQTEHRPALELEEIPQLLNKIAEYKGRRLTILAIQLNLM  238
            AVQ+  I  NPA DM GA+   ++ H PAL    +P++L ++A Y+GR +T +A++L+L+
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  239  IFIRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRKHLVPLCKQAMKIL  298
             F+RSSELRFARW E+DF   LW +P +RE I  V+ S RG KMK  H+VPL +QAM +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  299  KEIRQLTYEEGHDDGLIFTGCYDSFKPMSENTINKALRNMGYDTKQDICGHGFRTLACSA  358
             +++Q++     D  L+F G  D+ K MSENT+N ALR MGYDTK ++CGHGFRT+A +A
Sbjct  297  EQLKQIS----GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGA  352

Query  359  LIESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDANSNDMVRPF  418
            L ESGLWS+DA+E Q+SH E N+VRAAY H + HLD+RRLM+QWWAD+LD    + + P+
Sbjct  353  LGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

Query  419  EFD  421
            E+ 
Sbjct  413  EYA  415

206) KOX_24355 in NC_016612


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  360 bits (1353),  Expect = 9e-101, Method: Compositional matrix adjust.
 Identities = 206/417 (50%), Positives = 300/417 (72%), Gaps = 3/417 (0%)

Query  1    MSLNDSKIRNLKPSAKPFKVSDSHGLYLLVNPGGSRLWYLKYR--INRKESRLGLGAYPD  58
            M LN  ++   KP  K +K++D+ GLYL V++ GS+ W +KYR   ++KE RL++G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQQRDGIRKLLAHNINPAQQRSAERSTSSPDKTFKYVALDWHKSNRTWSENHAS  118
            V+LA+AR +RD  +KLL + I+P  ++   ++ +S   TF  +A +WH SN+ WSE+H S
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASMNNHIFPVIGHLPVAELKPRHFIDLLKGIEQKGLLEVAARTRQHMCNIMRHAIHQ  178
            R+L  ++  IFP IG   + +LK  H++  +K ++  G  +VA R +Q++  IMR A+++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIENNPAANLEGIISPPVKRHYPALQLERLPELLARIEDYKQGREltrlavlltlhlFI  238
            + I++NPA+++ G +S    RHYPAL   R+PE+LAR+  Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFKNRIWTIPATREAISGVRYSGRGAKMRTPHIVPLSRQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLSRQ++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  REISGHRVLIFPGDHNPYKPMCENTVNKALRLMRYDTKNEICGHGLRAMACSALMESGLW  358
            ++ISG++ L+FPGDH++ K M ENTVN ALR M YDTK E+CGHG+R+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AQDAVERQMSHQERNSVRAAYIHKAEYLDSRKAMMQWWSDYLDMCRKAYAPPYICGK  415
            ++DA+ERQ+SH ERN+VRAAYIH +E LD R+ M+QWW+DYLD+ +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

207) Dd1591_1514 in NC_012912


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  359 bits (1349),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 213/417 (52%), Positives = 305/417 (74%), Gaps = 3/417 (0%)

Query  1    MSLNDSKIRNLKPSAKPYKVSDSHGLYLLVNPGGSRLWYLKYR--INRKESRLGLGAYPD  58
            M LN  ++   KP  K YK++D+ GLYL V++ GS+ W +KYR   ++KE RL++G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQQRDGIRKLLAQNINPAQQRAAEKAPRSPEKSFRDVALDWHKSNRTWSESHAT  118
            V+LA+AR +RD  +KLL Q I+P  ++   +A  S   +F  +A +WH SN+ WSE H +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASMNNHLFPVIGHLPVTELKARHFIDllkgiekkglleVAARTRQHLCNIMRYAVHQ  178
            R+L  ++  +FP IG   + +LK+ H++  +K ++  G  +VA R +Q++  IMRYAV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIEHNPAANLDGIIAPPVKRHYpalpleklpellaRIEDYKQGRELTRMAVSLTLHLFI  238
            + I+ NPA+++ G ++    RHYPALP  ++PE+LAR+  Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFRNHIWTIPATREAIPGVRYSGRGAKMRTPHIVPLSRQSITILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLSRQ++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  REISGHQELIFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLW  358
            ++ISG++EL+FPGDH++ K M ENTVN ALR MGYDTK E+CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SQDAVERQMSHQERNSVRAAYIHKAEYLDARQAMMQWWSDYLDMNRESYVAPYVYAQ  415
            S+DA+ERQ+SH ERN+VRAAYIH +E LD R+ M+QWW+DYLD+ +   ++PY YA+
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

208) W5S_1636 in NC_017845


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  359 bits (1349),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 214/417 (52%), Positives = 305/417 (74%), Gaps = 3/417 (0%)

Query  1    MSLNDSKIRNLKPSAKPFKVSDSHGLYLLVNPGGSRLWYLKYR--INRKESRLGLGAYPD  58
            M LN  ++   KP  K +K++D+ GLYL V++ GS+ W +KYR   ++KE RL++G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQQRDGIRKLLVQNINPAQQRSAERSTSSPEETFKSVALSWHKSNRAWSENHAA  118
            V+LA+AR +RD  +KLLVQ I+P  ++   ++ +S   TF ++A  WH SN+ WSE+H +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASMNNHIFPIIGHLPVTELKTRHFIDllkgiekkglleVAARTRQHMCNIMRHAVHQ  178
            R+L  ++  IFP IG   + +LKT H++  +K ++  G  +VA R +Q++  IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIEHNPAANLDGIVAPPVKRHYpalplerlpellaSIEDYKQGRELTRLAVSLTLHLFI  238
            + I+ NPA+++ G ++    RHYPALP  R+PE+LA +  Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFRNKIWTIPATREAIPGVRYSGRGAKMRTPHIVPLSRQSVAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLSRQ++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  REISGHQELIFPGDHNRYKPMCENTVNKALRVMGYDTKDEICGHGFRAMACSALMESGLW  358
            ++ISG++EL+FPGDH+  K M ENTVN ALR MGYDTK E+CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AQDAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDTNREEYVAPYIYAQ  415
            ++DA+ERQ+SH ERN+VRAAYIH +E LD R+ M+QWW+DYLD  + E ++PY YA+
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

209) int in NC_015761


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  359 bits (1350),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 213/415 (52%), Positives = 298/415 (72%), Gaps = 2/415 (0%)

Query  6    MSLTDTAIRKLRPTDKPFKLGDSAGLYLLIKPNGSKLWYMKYR--IDGKEKKLAFGPYPD  63
            M L    +   +P DK +K++D++GLYL + ++GSK W MKYR   D KE +LAFG  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  64   VSLLTARQLRDAARIKMREGVDPSVDKKIAQQKKKNGQTFRQIAINWHADHRRWSEHYAT  123
            V+L  AR  RD A+  + +G+DP  ++K AQ  +  + TF  IA +WHA ++RWSE+  +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  124  TIRRRLEMYIFPDIGDRYIDQIVTEDLLFTLRKVENKGFLEITARLKNYVTEIMRYAVKK  183
             + R LE+YIFP+IG   I Q+ T +LL  ++KV+  G  +++ RL++ VT IMRYAV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  184  QLIRSNPALDLDGEFTPPETQHYPAlpleklpellSRTDNYSGRLLTRYALKLSLLFFVR  243
            + I SNPA D+ G ++   ++HYPALP  ++PE+L+R   Y GR++TR A+ LSLL FVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  244  SSELRFARWSEIDWQQKLWIIPEEREQIENVRFSHRGTKMKTQHIVPLSDQAMAILKQTE  303
            SSELRFARW E+D ++ LW +P  RE+I  VR+S RG KMK +HIVPLS QAM +L Q  
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  304  ALSGHLAFIFPGEYDQDKCMSDNTISKALRVMGYDTRKEICGHGFRAMACSALSESGLWS  363
             +SG+  ++FPG+ D  K MS+NT++ ALR MGYDT+ E+CGHGFR+MA +AL+ESGLWS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  364  KEAIEKQMSHQERNSVRAAYIHKAEYLEERINMMQWWADYLDANTKRHVSPYQFA  418
             +AIE+Q+SH ERN+VRAAYIH +E L+ER  M+QWWADYLD     H++PY++A
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYA  415

210) CFSAN002050_16945 in NC_021818


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  359 bits (1349),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 216/417 (52%), Positives = 300/417 (72%), Gaps = 3/417 (0%)

Query  1    MSLSDAKIRSIKPSDKPFKLTDSQGLYLLVNPGGSRLWYLKYR--FNRKESRIALGAYPQ  58
            M L+  ++ + KP DK +K++D+ GLYL V++ GS+ W +KYR   ++KE R+A+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQRDGIRKLLAQNINPAQQRMTEKAAASPEKCFEAVAVAWHKTNKKWSADYAE  118
            V+L++AR +RD  +KLL Q I+P  ++   +A  S    FE++A  WH +NK+WS D   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RILASMKNHIFPAIGHLPVTMLKTQHFTALLKVIEDKGFLEVASRTRQQLCNIMRYAVQQ  178
            R+L  +   IFP IG   +  LKT H+ A +K ++  G  +VA R +Q++  IMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLTESNPAQHLEGVTAPPVKNHYPAlplerlpelferIGDYQQGRQLTRLAVVLTLHLFI  238
            +  +SNPA ++ G  +     HYPALP  R+PE++ R++ Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFRNKIWTIPATRETIEKVRFSGRGAKMRTPHIVPLSRQAIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I  VR+S RG KM+  HIVPLSRQA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KEISGHLELVFPGDHNPYKPMSENTINRALRLMGYDTKTDVCGHGFRTMACSALVESELW  358
            K+ISG+ EL+FPGDH++ K MSENT+N ALR MGYDTKT+VCGHGFRTMA +AL ES LW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHRAEHLDARKDMMQWWSDYLDVSREGYVAPYIYAR  415
            S DA+ERQ+SH ERN+VRAAYIH +EHLD R+ M+QWW+DYLD+ +   ++PY YAR
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

211) int in NC_011745


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  359 bits (1349),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 208/423 (50%), Positives = 302/423 (72%), Gaps = 10/423 (2%)

Query  1    MSLTDIKAKNAKPLEKEYKLTDGFGMFLRVTPKGSKYWQMAYR--FEGKQKLFSIGVYPA  58
            M L   +   AKP +K YK++DG G++L V++KGSKYW+M YR   + K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQRRDEARRLLAQGIDPNAKKQAEVKELKAKRDNTRSFRTVAKAWFSTKTKWSD  118
            V+L++AR +RDEA++LL QGIDP++    E KE +A    + +F T+A+ W +++ +WS+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKT----EQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYGDAVWKRLETYVFPVIGDKDVAELDTGDLLVPVKKVEALGYLEVAMRIQQYITAILRH  178
            D    V + LE Y+FP IG  D+ +L T++LL P+KKV+A G  +VA R+QQ +TAI+R 
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKLIRHNPAYDMEGAVQKPQTEHRPALELEEIPQLLNKIAEYKGRRLTILAIQLNLM  238
            AVQ+  I  NPA DM GA+   ++ H PAL    +P++L ++A Y+GR +T +A++L+L+
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  239  IFIRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRKHFVPLCKQAMKIL  298
             F+RSSELRFARW E+DF   LW +P +RE I  V+ S RG KMK  H+VPL +QAM +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  299  KEIRQLTYEEGHDDGLIFTGCYDSFKPMSENTINKALRNMGYNTKQDICGHGFRTLACSA  358
             +++Q++     D  L+F G  D+ K MSENT+N ALR MGY+TK ++CGHGFRT+A +A
Sbjct  297  EQLKQIS----GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGA  352

Query  359  LIESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLEQRRLMLQWWADYLDASRNGMVRPF  418
            L ESGLWS+DA+E Q+SH E N+VRAAY H + HL++RRLM+QWWADYLD  +   + P+
Sbjct  353  LGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

Query  419  EFA  421
            E+A
Sbjct  413  EYA  415

212) Pecwa_1693 in NC_013421


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  358 bits (1343),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 213/417 (52%), Positives = 306/417 (74%), Gaps = 3/417 (0%)

Query  1    MSLNDSKIRKLKPSAKSFKVSDSHGLYLLVNSSGSRLWYLKYR--INRKESRLGLGAYPD  58
            M LN  ++   KP  K++K++D+ GLYL V++ GS+ W +KYR   ++KE RL++G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQQRDGIRKLLAQNINPAQQRSAERTTSSPEKTFKHVALEWHKSNRSWSENHAA  118
            V+LA+AR +RD  +KLL Q I+P  ++   ++ +S   TF  +A EWH SN+ WSE+H +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASMNNHIFPIIGHLPVTELKTRHFIDllkgiekkglleVTARTRQHMCNIMRHAVHQ  178
            R+L  ++  IFP IG   + +LKT H++  +K ++  G  +V+ R +Q++  IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIENNPAANLDGIIAPPVKRHYpalplerlpellaSIEDYKQGRELTRLAVSLTLHLFI  238
            + I++NPA+++ G ++    RHYPALP  R+PE+LA +  Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEINFRNKIWTIPATRESIPGVRYSGRGAKMRTPHIVPLSRQSIAILKQI  298
            RSSELRFARW E++F + +W +PA RE I GVRYS RG KM+  HIVPLSRQ++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  RDISGHQELIFPGDHNPYKPMCENTVNKALRLMGYDTKDEVCGHGFRTMACSALMESGVW  358
            ++ISG++EL+FPGDH++ K M ENTVN ALR MGYDTK EVCGHGFRTMA +AL ESG+W
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  PQDAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDTNREGYIAPYIYAQ  415
            ++DA+ERQ+SH ERN+VRAAYIH +E LD R+ M+QWW+DYLD  +   I+PY YA+
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

213) CKO_00953 in NC_009792


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  357 bits (1342),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 202/413 (49%), Positives = 297/413 (72%), Gaps = 3/413 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYR--INGKESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALAWHKSNRKWSQNTAD  118
            V+L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASMNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQ  178
            R+L  ++  IFP IG+  + +LK  H++  +K+++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIEAYHQGRELTRLAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R+ AY+ GR +TR+AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLDICRKAYVSPY  411
            + DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYLDI +   ++PY
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

214) A79E_1743 in NC_018522


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  357 bits (1342),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 202/413 (49%), Positives = 297/413 (72%), Gaps = 3/413 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYR--INGKESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALAWHKSNRKWSQNTAD  118
            V+L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASMNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQ  178
            R+L  ++  IFP IG+  + +LK  H++  +K+++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIEAYHQGRELTRLAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R+ AY+ GR +TR+AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLDICRKAYVSPY  411
            + DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYLDI +   ++PY
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

215) KPR_3398 in NC_021232


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  357 bits (1342),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 202/413 (49%), Positives = 297/413 (72%), Gaps = 3/413 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYR--INGKESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALAWHKSNRKWSQNTAD  118
            V+L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASMNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQ  178
            R+L  ++  IFP IG+  + +LK  H++  +K+++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIEAYHQGRELTRLAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R+ AY+ GR +TR+AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLDICRKAYVSPY  411
            + DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYLDI +   ++PY
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

216) Rahaq2_2006 in NC_016818


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  357 bits (1342),  Expect = 7e-100, Method: Compositional matrix adjust.
 Identities = 209/423 (50%), Positives = 304/423 (72%), Gaps = 5/423 (1%)

Query  1    MSLNDTKIRNLKPSAKPFKVSDSHGLYLLVNPGGSRLWYLKYR--IDRKESRLGLGAYPD  58
            M LN  ++   KP  K +K++D+ GLYL V++ GS+ W +KYR   D+KE RL++G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAYARQQRDSIRKLLAQNINPAQQRSAERTPSTPEKTFKHVALEWHNSNRTWSENHAT  118
            V+LA AR +RD  +KLL Q I+P  ++   ++ ++   TF  +A EWH SN+ WSE+H +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASMNNHIFPIIGHLQVTELNTRHFIDLLKRIEKKGLLEVAARTRQHMCNIMRHAVHQ  178
            R+L  ++  IFP IG  ++ +L+T H++  +K+++  G  +VA R +Q++  IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIENNPAANLEGIIAPPVKRHYPAlplerlpelliriKDYQQGRELTRLAVSLTLHLFI  238
            + I++NPA+++ G ++    RHYPALP  R+PE+L R+  Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFRNRIWTIPATREAIPGVLYSGRGAKMRTPHIVPLSRQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GV YS RG KM+  HIVPLSRQ++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  REISGHQVLVFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLW  358
            ++ISG++ L+FPGDH++ K M ENTVN ALR MGYDTK E+CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AQDAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDMCRKAYAPPYICGKEIS  418
            ++DA+ERQ+SH ERN+VRAAYIH +E LD R+ M+QWW+DYLD+ +     PY  ++   
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR--V  417

Query  419  CTM  421
            C +
Sbjct  418  CNI  420

217) ST548_p7750 in NC_020181


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  357 bits (1342),  Expect = 7e-100, Method: Compositional matrix adjust.
 Identities = 202/413 (49%), Positives = 297/413 (72%), Gaps = 3/413 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYR--INGKESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQREGVRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            V+L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASMNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQ  178
            R+L  ++  IFP IG+  + +LK  H++  +K+++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIEAYHQGRELTRLAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R+ AY+ GR +TR+AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLDICRKAYVSPY  411
            + DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYLDI +   ++PY
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

218) A79E_1796 in NC_018522


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  356 bits (1338),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 207/423 (49%), Positives = 301/423 (72%), Gaps = 10/423 (2%)

Query  1    MSLTDIKAKNAKPLEKEYKLTDGFGMFLRVTPKGSKYWQMAYR--FEGKQKLFSIGVYPA  58
            M L   +   AKP +K YK++DG G++L V++KGSKYW+M YR   + K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQRRDEARRLLAQGIDPNAKKQAEVKELKAKRDNTRSFRTVAKAWFSTKTKWSD  118
            V+L++AR +RDEA++LL QGIDP++    E KE +A    + +F T+A+ W +++ +WS+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKT----EQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYGDAVWKRLETYVFPAIGDKDVAELDTGDLLVPVKKVEALGYLEVAMRTQQYITAILRH  178
            D    V + LE Y+FP IG  D+ +L T++LL P+KKV+A G  +VA R QQ +TAI+R 
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKLIRHNPAYDMEGAVQKPQTEHRPALELEEIPQLLNKIAEYKGRRLTILAIQLNLM  238
            AVQ+  I  NPA DM GA+   ++ H PAL    +P++L ++A Y+GR +T +A++L+L+
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  239  IFIRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRKHFVPLCKQAIRIL  298
             F+RSSELRFARW E+DF   LW +P +RE I  V+ S RG KMK  H+VPL +QA+ +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  299  KEIRQLTYEEGHDDGLIFTGCYDSFKPMSENTINKALRNMGYNTKQDICGHGFRTLACSA  358
             +++Q++     D  L+F G  D+ K MSENT+N ALR MGY+TK ++CGHGFRT+A +A
Sbjct  297  EQLKQIS----GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGA  352

Query  359  LIESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLEQRRLMLQWWADYLDASRNGMVRPF  418
            L ESGLWS+DA+E Q+SH E N+VRAAY H + HL++RRLM+QWWADYLD  +   + P+
Sbjct  353  LGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

Query  419  EFA  421
            E+A
Sbjct  413  EYA  415

219) int in NC_011745


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  356 bits (1336),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 201/417 (49%), Positives = 297/417 (72%), Gaps = 3/417 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYR--INGKESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALAWHKSNRKWSQNTAD  118
            V+L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K+++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRLAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR+AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMSHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

220) W5S_0472 in NC_017845


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  354 bits (1329),  Expect = 6e-99, Method: Compositional matrix adjust.
 Identities = 197/327 (61%), Positives = 260/327 (80%), Gaps = 0/327 (0%)

Query  36   EQSEALTFRDVAIEWHATNKKWSEEHSRRVLKSLEDNLFSAIGKRNIAELKTRDLLAPIK  95
            E+S A TF  +A EWHA+NK+WSE+H  RVL+ LE  +F+ IG  +I +LKT +LLAPIK
Sbjct  93   ENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIK  152

Query  96   VVEQSGRLEVASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASSNRQHRPALELKHTP  155
             V+ SG+ +VA RLQQR TAIMRYAVQ++ ID NPA +MAGA+++++ +H PAL   + P
Sbjct  153  KVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFP  212

Query  156  KLLQRIDNYTGRPLTRLAAELTLLIFIRSSELRFARWSEIDFETSMWTIPPEREPIEGVK  215
             +L R+  Y GR +TR+A EL+LL F+RSSELRFARW E+DF+ S+W +P+ RE I GV+
Sbjct  213  EFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVR  272

Query  216  HSHRGSKMRTPHLVPLSRQALVILKQIQQFSGDHELIFIGDHDPRKPMSENTVNKALRVM  275
             S RG KM+  H+VPLSRQA+V+L Q++Q+SGD EL+F GDHD+ K MSENTVN ALR M
Sbjct  273  YSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAM  332

Query  276  GYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHMERNSVRAAYIHKAEHLDERKL  335
            GYDTK EVCGHGFRTMA ++L ESGLWS DA+ERQ+SH ERN+VRAAYIH +EHLDER+L
Sbjct  333  GYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRL  392

Query  336  MLQWWADFLDANREKAVSAFDFGKVSN  362
            M+QWWAD+LD  +   ++++++++V N
Sbjct  393  MVQWWADYLDIIQYEHITPYEYARVCN  419

221) SPAB_01138 in NC_010102


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  354 bits (1330),  Expect = 6e-99, Method: Compositional matrix adjust.
 Identities = 210/417 (51%), Positives = 299/417 (72%), Gaps = 3/417 (0%)

Query  1    MSLSDAKIRSIKPSDKPFKLTDSQGLYLLVNPGGSRLWYLKYR--FNRKESRIALGAYPQ  58
            M L+  ++ + KP DK +K++D+ GLYL V++ GS+ W +KYR   ++KE R+A+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQRDGIRKLLAQNINPAQQRMTEKAAASPEKCFEAVAVAWHKTNKKWSADYAE  118
            V+L++AR +RD  +KLL Q I+P  ++   +A  S    FE++A  WH +NK+WS D   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RILASMKNHIFPAIGHMPVTMLKTQHFTALLKVIEDKGFLEVASRTRQQLCNIMRYAVQQ  178
            R+L  +   IFP IG   +  LKT H+ A +K ++  G  +VA R +Q++  IMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLTENNPAQHLEGVTAPPVKNHYPAlplerlpelferIGDYQQGRQLTRLAVVLTLHLFI  238
            +  ++NPA ++ G  +     HYPALP  R+PE++ R++ Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFRHKIWTIPATRETIEKVRFSGRGAKMRTPHIVPLSWQSIAILKQI  298
            RSSELRFARW E+DF   +W +PA RE I  VR+S RG KM+  HIVPLS+Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  QEISGHLELVFPGDHNPYKPMSENTINRALRLMGYDTKADVCGHGFRAMACSALVESELW  358
            ++ISG+ EL+FPGDH++ K MSENT+N ALR MGYDTK++VCGHGFR+MA +AL ES LW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHRAEHLDARKAMMQWWSDYLDVSREGYVAPYIYAR  415
            S DA+ERQ+SH ERN+VRAAYIH +EHLD R+ M+QWW+DYLD+ +   ++PY YAR
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

222) A79E_1748 in NC_018522


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  354 bits (1330),  Expect = 6e-99, Method: Compositional matrix adjust.
 Identities = 205/413 (50%), Positives = 293/413 (71%), Gaps = 3/413 (0%)

Query  1    MSLTDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSHLWYLKYR--INGKESRIALGAYPA  58
            M L   ++ + KP DK +K++D+ GLYL V + GS  W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQREGIRKMLALNINPAQQRAAERGSRMPEKMFKTVALAWHSSNKKWSQNTAD  118
            V+L++AR +R+  +K+L   I+P  ++   ++       F T+A  WH+SNK+WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGHLSVSELKPRHFIDLLKGIEVKGLLEVASRTRQHLSNIMRYAVHQ  178
            R+L  L+  IFP IG   + +LK  H++  +K ++  G  +VA R +Q+++ IMRYAV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDSNPAANLDGVTTPPVRHHYPAlqlerlpellerIDGYHQGRELTRLAVLLTLHVFI  238
            + IDSNPA+++ G  +    +HYPAL   R+PE+L R+ +Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREAIAGVRYSGRGAKMRTAHIVPLSEQAIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS QA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KEISGVYELVFPGDHNPYKPMCENTVNKALRLMGYNTKQDICGHGFRTMACSALMESGLW  358
            K+ISG  EL+FPGDH++ K M ENTVN ALR MGY+TK ++CGHGFRTMA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SQDAVERQMSHQERNTVRLAYIHKAEHLEARKAMMQWWSDYLDVCRKTYVPPY  411
            S+DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYLD+ +   + PY
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

223) int in NC_009648


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  354 bits (1330),  Expect = 8e-99, Method: Compositional matrix adjust.
 Identities = 201/348 (58%), Positives = 270/348 (78%), Gaps = 1/348 (0%)

Query  2    REEAQLLLISGIDPSAHRKAERLAITPEHTFESVAREWVTSNVNWSAEHKKRVLRYFELY  61
            R+EA+ LL+ GIDP +++K  +   +   TFE++AREW +SN  WS +H+ RVLRY+ELY
Sbjct  70   RDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELY  129

Query  62   VFPTNGSCDITKMKVKDLLVPIKEVEKAGKLDVASRLQQRTACVMRYAVQNGIIDHNPAS  121
            +FP  GS DI ++K  +LL PIK V+ +GK DVA RLQQR + +MRYAVQN+ ID NPAS
Sbjct  130  IFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPAS  189

Query  122  DLTGAVSTPKVRHHPALDLNLIPDFLERVDDFKGRkltqlavklalllFIRSSELRFARW  181
            D++GA+ST K RH PAL  + +P+FL R+  ++GR +T++AV L+LL F+RSSELRFARW
Sbjct  190  DMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARW  249

Query  182  DEIDLRNAMWTIPAEREPIPGVKYSARGAKMHSPHLVPLSRQAIELLHKVRQHCRPGTEL  241
            DE+D+ +++W +PA RE I GV+YS RG KM   H+VPLSRQA+ LL++++Q    + EL
Sbjct  250  DEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQIS-GDKEL  308

Query  242  VFPGDHNYRKPMSENTINKALRVMGYDTQKDVCGHGFRTMACSALVESGLWSSDAVERQM  301
            +FPGDH+  K MSENT+N ALR MGYDT+ +VCGHGFRTMA +AL ESGLWS DA+ERQ+
Sbjct  309  LFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQL  368

Query  302  SHQERKRVRAAYIHKAQHLEERREMMQWWADYLDANRFRHVVPYGFKK  349
            SH ER+ VRAAYIH ++HL+ERR M+QWWADYLD  ++ H+ PY + +
Sbjct  369  SHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

224) intB in NC_004547


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  352 bits (1322),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 208/425 (49%), Positives = 303/425 (72%), Gaps = 11/425 (2%)

Query  1    MSLTDTKVKNAKPSEKVVKLTDGFGLYLLVHTNGSKYWQLGYR--FEGKQKVFSIGVYPA  58
            M L   +V  AKP +K  K++DG GLYL V ++GSKYW++ YR   + K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLANARQRRDEAKKLLAAGVDPSAKKRADNKSVQEKRNNTRAFKTVAKSWFATKTTWSE  118
            V+LA+AR +RDEAKKLL  G+DP    ++++K  Q   + + +F T+A+ W A++  WSE
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDP----KTEQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYQRSVWTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEKLGYLEIAMRVKQYATAIMRY  178
            D +  V   LE Y+FP+IG+ DI +L T++LL PIKK++  G  ++A R++Q  TAIMRY
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKMIRFNPAYDLEGAVQKPQTEHRPAIELEEIPTLLERIEGYKGRSRLTQLAIKLNL  238
            AVQ+  I  NPA D+ GA+   ++ H PA+    +P +L R+ +Y+GR  +T++A+ L+L
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRV-MTRIAVELSL  235

Query  239  LIFIRSSELRFARWSEIDFKSGLWVIPEQREAIKGIKHSDRGAKMRRKHYVPLCEQALVI  298
            L F+RSSELRFARW E+DF  +LW +P +RE IKG++ S RG KM+  H VPL  QA+V+
Sbjct  236  LTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVL  295

Query  299  LGELKDLTYDVNGDDGFILTGCYDAMKPMSENTINKALRKMGYDTKTDLCGHGFRTLACS  358
            L +LK+    ++GD  +++ G  DA K MSENT+N ALR MGYDTKT++CGHGFRT+A +
Sbjct  296  LEQLKQ----ISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARG  351

Query  359  ALIESGIWPEDVVELQMSHMEKNNVRAAYTHKAKHLEQRRLMLQWWADFLDANGSGMVRP  418
            AL ESG+W++D +E Q+SH E+NNVRAAY H + HL++RRLM+QWWAD+LD      + P
Sbjct  352  ALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITP  411

Query  419  FEFAQ  423
            +E+A+
Sbjct  412  YEYAR  416

225) intB in NC_004547


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  352 bits (1321),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 210/425 (50%), Positives = 305/425 (72%), Gaps = 11/425 (2%)

Query  1    MSLTDSKVKNAKSLEKEYKLTDGFGMHLLVHPNGSKYWRLSYR--FEKKQRLLALGVYPA  58
            M L   +V  AK+ +K YK++DG G+ L V ++GSKYWR+ YR   +KK+  LA+GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQRRDEAKKLLAAGIDPSAKKQADNKTIQEKRNNTRAFKTVAKSWFSTKTTWSE  118
            V+LA+AR +RDEAKKLL  GIDP    ++++K  Q   + + +F T+A+ W +++  WSE
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDP----KTEQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYQRSVWTRLETYLFPDIGNKDIAELDTGDLLAPIKKIEKLGYLEIAMRVKQYTTAIMRY  178
            D +  V   LE Y+FP+IG+ DI +L T++LLAPIKK++  G  ++A R++Q  TAIMRY
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKMIRFNPAYDLEGAVQKPQTEHRPAIELEEIPTLLERIEGYQGRSRLTQLAIKLNL  238
            AVQ+  I  NPA D+ GA+   ++ H PA+    +P +L R+ +Y+GR  +T++A+ L+L
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRV-MTRIAVELSL  235

Query  239  LIFVRSSELRFARWSEIDFKSALWVIPEQRQAIEGIKHSGRGAKMRRKHYVPLCDQALAI  298
            L FVRSSELRFARW E+DF  +LW +P +R+ I G++ S RG KM+  H VPL  QA+ +
Sbjct  236  LTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVL  295

Query  299  LEELKDLTYDVNGDDGFILTGCYDAMKPMSENTINKALRKMGYDTKTDLCGHGFRTLACS  358
            LE+LK+    ++GD  +++ G  DA K MSENT+N ALR MGYDTKT++CGHGFRT+A +
Sbjct  296  LEQLKQ----ISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARG  351

Query  359  ALIESGIWPEDVVELQMSHMEKNNVRAAYTHKAKHLEQRRLMLQWWADFLDANRNGMVRP  418
            AL ESG+W++D +E Q+SH E+NNVRAAY H + HL++RRLM+QWWAD+LD  +   + P
Sbjct  352  ALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITP  411

Query  419  FEFAQ  423
            +E+A+
Sbjct  412  YEYAR  416

226) Pecwa_1586 in NC_013421


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  352 bits (1322),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 210/425 (50%), Positives = 304/425 (72%), Gaps = 11/425 (2%)

Query  1    MSLTDTKVKNAKPSEKVVKLTDGFGLYLLVHPNGSKYWQLGYR--FEGKQKVFSIGVYPA  58
            M L   +V  AKP +K  K++DG GLYL V ++GSKYW++ YR   + K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQRRDEAKKLLAAGIDPSAKKQADNKIVQERRNNTRAFKTVAKSWFTTKTTWSE  118
            V+LA+AR +RDEAKKLL  GIDP    ++++K  Q   + + +F T+A+ W +++  WSE
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDP----KTEQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYQRSVWTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEKLGYLEIAMRVKQYATAIMRY  178
            D +  V   LE Y+FP+IG+ DI +L T++LL PIKK++  G  ++A R++Q  TAIMRY
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKMIRFNPAYDLEGAVQKPQTEHRPAIELEEIPTLLERIEAYKGRSRLTQLAIKLNL  238
            AVQ+  I  NPA D+ GA+   ++ H PA+    +P +L R+ AY+GR  +T++A+ L+L
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRV-MTRIAVELSL  235

Query  239  LIFVRSSELRFARWSEIDFKSALWVIPEQREAIKGIKHSGRGAKMRRKHYVPLCHQALAI  298
            L FVRSSELRFARW E+DF  +LW +P +RE IKG++ S RG KM+  H VPL +QA+ +
Sbjct  236  LTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVL  295

Query  299  LEELKDLTYDVNGDDGFILTGCYDAMKPMSENTINKALRKMGYDTKTDLCGHGFRTLACS  358
            LE+LK+    ++GD  +++ G  DA K MSENT+N ALR MGYDTKT++CGHGFRT+A +
Sbjct  296  LEQLKQ----ISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARG  351

Query  359  ALIESGIWPEDVVELQMSHMEKNNVRAAYTHKAKHLEQRRLMLQWWADFLDANSNGMVRP  418
            AL ESG+W++D +E Q+SH E+NNVRAAY H + HL++RRLM+QWWAD+LD      + P
Sbjct  352  ALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITP  411

Query  419  FEFAQ  423
            +E+A+
Sbjct  412  YEYAR  416

227) Pecwa_1766 in NC_013421


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  351 bits (1317),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 208/424 (50%), Positives = 301/424 (71%), Gaps = 11/424 (2%)

Query  1    MSLTDTKVKNAKPSEKVVKLTDGFGLYLLVHPNGSKYWQLGYR--FEGKQKVFSIGVYPA  58
            M L   +V  AKP +K  K++DG GLYL V ++GSKYW++ YR   + K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQRRDDAKKLLAAGIDPSAKKRADNKSVQEKRNNTRAFKTVAKSWFATKTTWSE  118
            V+LA+AR +RD+AKKLL  GIDP    ++++K  Q   + + +F T+A+ W A++  WSE
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDP----KTEQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYQRSVWTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEKLGYLEIAMRVKQYATAIMRY  178
            D +  V   LE Y+FP+IG+ DI +L T++LL PIKK++  G  ++A R++Q  TAIMRY
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKMIRFNPAYDLEGAVQKPQTEHRPAIELEEIPTLLERIDGYQGRSRLTQLAIKLNL  238
            AVQ+  I  NPA D+ GA+   ++ H PA+    +P +L R+ +Y+GR  +T++A+ L+L
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRV-MTRIAVELSL  235

Query  239  LIFVRSSELRFARWSEIDFKSALWVIPEQREAIKGIKHSGRGAKMHRKHYVPLCDQALAI  298
            L FVRSSELRFARW E+DF  +LW +P +RE IKG++ S RG KM   H VPL  QA+ +
Sbjct  236  LTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVL  295

Query  299  LEELKDLTYDVNGDDGFILTGCYDAMKPMSENTINKALRKMGYDTKTDLCGHGFRTLACS  358
            LE+LK+    ++GD  +++ G  DA K MSENT+N ALR MGYDTKT++CGHGFRT+A +
Sbjct  296  LEQLKQ----ISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARG  351

Query  359  ALIESGIWPEDVVELQMSHMEKNNVRAAYTHKAKHLEQRRLMLQWWADFLDANSNGMVRP  418
            AL ESG+W++D +E Q+SH E+NNVRAAY H + HL++RRLM+QWWAD+LD      + P
Sbjct  352  ALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITP  411

Query  419  FEFS  422
            +E++
Sbjct  412  YEYA  415

228) Dda3937_02713 in NC_014500


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  349 bits (1310),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 220/415 (54%), Positives = 303/415 (74%), Gaps = 3/415 (0%)

Query  2    LTDSKVRSAKPLAKSYKLTDSQGLYLTVSTSGAKLWYFRYRFGG--KENRLAFGPYPQTT  59
            L   +V +AKP  K+YK++D+ GLYL VS+ G+K W  +YR  +  KE+RLAFG  P  T
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  60   laearekrdaarkllaSGISPSQLRKTNNPAVDESHTFQSVTMAWHTSSLKLWSDAHADK  119
            LA+AR KRD A+KLL  GI P   +K  ++    + TF++++  WH+S+ K WS+ H  +
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASN-KRWSEDHRSR  121

Query  120  ILICLKRYVFPAIGAMDIAQVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQG  179
            +L  L  Y+FP IG+ DI Q+ T HL   +K +D  G HDVA R++Q++T IMR AVQ++
Sbjct  122  VLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQND  181

Query  180  VIKYNPAYDLDGVVTPVATQHHPAlplkrlpellekIESYKGRMLTRLALELNLHVFLRS  239
             I  NPA D+ G ++   ++H PALP  R+PE+L ++ +Y+GR++TR+A+EL+L  F+RS
Sbjct  182  YIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRS  241

Query  240  SELRFARWDEFNLKAHIWSVPAQREAVNDVRFSERGAKMKDEHLVPLSRQAVALLKQIQA  299
            SELRFARWDEF++   +W VPA+RE +++VR+S RG KMK+EH+VPLSRQA+ LL Q++ 
Sbjct  242  SELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQ  301

Query  300  ISGKSVFVFPGAHTLNKPMSENTINKALRVIGYDTKSEVCGHGFRTMACSALNESGRWSK  359
            ISG   ++FPG H   K MSENT+N ALR +GYDTK+EVCGHGFRTMA +AL ESG WS 
Sbjct  302  ISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSD  361

Query  360  DAIERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYAR  414
            DAIERQ+SH ERN VRAAY+H +EHL+ R  M+QWW+DYLD+ +   ++PY YAR
Sbjct  362  DAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

229) Dd703_2459 in NC_012880


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 207/425 (49%), Positives = 303/425 (72%), Gaps = 11/425 (2%)

Query  1    MSLTDTKVKNAKSSEKAVKLTDGFGLYLLVHPNGSKYWQLGYR--FEGKQKVFSIGVYPA  58
            M L   +V  AK+ +K+ K++DG GLYL V ++GSKYW++ YR   + K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQRRDEAKKLLAAGIDPSAKKQADNKTIQEKRNNTRAFKTVAKSWFATKTTWSE  118
            V+LA+AR +RDEAKKLL  GIDP    ++++K  Q   + + +F T+A+ W A++  WSE
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDP----KTEQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYQRSVWTRLETYLFPDIGNKDISELDTGDLLVPIKKIEKLGYLEIAMRVKQYATAIMRY  178
            D +  V   LE Y+FP+IG+ DI +L T++LL PIKK++  G  ++A R++Q  TAIMRY
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKMIRFNPAYDLEGAVQKPQTEHRPAIELEEIPTLLERIESYKGRSRLTQLAIKLNL  238
            AVQ+  I  NPA D+ GA+   ++ H PA+    +P +L R+ +Y+GR  +T++A+ L+L
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRV-MTRIAVELSL  235

Query  239  LIFVRSSELRFARWSEIDFKSALWVIPEQREAIEGIKHSGRGAKMRRKHYVPLCDQALAI  298
            L FVRSSELRFARW E+DF  +LW +P +RE I G++ S RG KM+  H VPL  QA+ +
Sbjct  236  LTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVL  295

Query  299  LEELKDLTYDVNGDEGFILTGCYDAMKPMSENTINKALRKMGYDTKTDLCGHGFRTLACS  358
            LE+LK+    ++GD  +++ G  DA K MSENT+N ALR MGYDTKT++CGHGFRT+A +
Sbjct  296  LEQLKQ----ISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARG  351

Query  359  ALIESGIWPEDVVELQMSHMEKNNVRAAYTHKAKHLEQRRLMLQWWADFLDANSNGMVRP  418
            AL ESG+W++D +E Q+SH E+NNVRAAY H + HL++RRLM+QWWAD+LD      + P
Sbjct  352  ALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITP  411

Query  419  FEFSQ  423
            +E+++
Sbjct  412  YEYAR  416

230) ECO111_2624 in NC_013364


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 207/424 (49%), Positives = 301/424 (71%), Gaps = 10/424 (2%)

Query  1    MSLTDTKVKNARPAEKAVKLTDGFGLYLLVHPNGSKYWQLGYR--FDGKQKVFSIGVYPA  58
            M L   +V  A+P +K+ K++DG GLYL V ++GSKYW++ YR   D K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQRRDEAKKLLAQGVDPNAKKLADEKALQEKRDKTCSFRVVARSWFATKTKWSE  118
            V+LA+AR +RDEAKKLL QG+DP++    ++K  Q     + +F  +AR W A++ +WSE
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKT----EQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYADTVWKRLETYVFPDIGDSNVSDLDTGDLLVPIKNAETLGYLEIAMRIKQYITAILRH  178
            D    V + LE Y+FP+IG S++ +L T++LL PIK+ ++ G  ++A R++Q +TAI+R 
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLNLL  238
            AVQ+  +  NPA DM GA+    + H PAL    +P +L R+ AY+GR +T +A+ L+LL
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  239  IFIRSSELRYARWSEIDFNSKLWVIPEKREAIERVKYSTRGAKMKRQHFVPLCRQALKIL  298
             F+RSSELR+ARW E+DF+  LW +P KRE I  V+YS RG KMK +H+VPL RQA+ +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  299  KEIRQLTYEEGNEAGLIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSA  358
             +++Q++     +  L+F G  D+ K MSENT+N ALR MGYDT  ++CGHGFRT+A +A
Sbjct  297  EQLKQIS----GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGA  352

Query  359  LIESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLEQRRLMLQWWADYLDANRDGMVRPF  418
            L ESGLWS+DA+E Q+SH E N+VRAAY H + HL++RRLM+QWWADYLD  +   + P+
Sbjct  353  LGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

Query  419  EFAQ  422
            E+A+
Sbjct  413  EYAR  416

231) W5S_1599 in NC_017845


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  349 bits (1309),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 209/425 (50%), Positives = 302/425 (72%), Gaps = 11/425 (2%)

Query  1    MSLTDTKVKNAKPSEKAVKLTDGFGLYLLVHPNGSKYWQLGYRFQG--KQKVFSIGVYPA  58
            M L   +V  AKP +K+ K++DG GLYL V ++GSKYW++ YR  +  K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQRRDEAKKLLAAGIDPSAKKQADNKIVQERRNNTRAFKTVAKSWFATKTTWSE  118
            V+LA+AR +RDEAKKLL  GIDP    ++++K  Q   + + +F T+A+ W A++  WSE
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDP----KTEQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYQRSVWTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEKLGYLEIAMRVKQYATAIMRY  178
            D +  V   LE Y+FP+IG+ DI +L T++LL PIKK++  G  ++A R++Q  TAIMRY
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKMIRFNPAYDLEGAVQKHQTEHRPAIELEEIPTLLERIEAYKGRSRLTQLAIKLNL  238
            AVQ+  I  NPA D+ GA+   ++ H PA+    +P +L R+ AY+GR  +T++A+ L+L
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRV-MTRIAVELSL  235

Query  239  LIFVRSSELRFARWSEIDFKSALWVIPEERETIEGIKHSGRGAKMRRKHYVPLCNQALAI  298
            L FVRSSELRFARW E+DF  +LW +P  RE I G++ S RG KM+  H VPL  QA+ +
Sbjct  236  LTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVL  295

Query  299  LEELKDLTYDVNGDDGFILTGCYDAMKPMSENTINKALRKMGYDTKTDLCGHGFRTLACS  358
            LE+LK+    ++GD  +++ G  DA K MSENT+N ALR MGYDTKT++CGHGFRT+A +
Sbjct  296  LEQLKQ----ISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARG  351

Query  359  ALIESGIWPEDVVELQMSHMEKNNVRAAYTHKAKHLEQRRLMLQWWADFLDANSNGMVRP  418
            AL ESG+W++D +E Q+SH E+NNVRAAY H + HL++RRLM+QWWAD+LD      + P
Sbjct  352  ALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITP  411

Query  419  FEFGQ  423
            +E+++
Sbjct  412  YEYAR  416

232) SG1996 in NC_011274


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  349 bits (1309),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 207/424 (49%), Positives = 301/424 (71%), Gaps = 10/424 (2%)

Query  23   MSLTDTKVKNTRPSEKAVKLTDGFGLYLLVHPNGSKYWQLGYR--FDGKQKVFSIGVYPA  80
            M L   +V  ++P +K+ K++DG GLYL V ++GSKYW++ YR   D K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  81   VSLADARQRRDEAKRLLAQGIDPNAKKQADEKVLQEKRDKTRSFRVVAKSWFATKTKWSE  140
            V+LA+AR +RDEAK+LL QGIDP++    ++K  Q     + +F  +A+ W A++ +WSE
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKT----EQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  141  DYADTVWKRLETYVFPDIGDRNVSELDTGDLLVPVKKAETLGYLEIAMRIKQYITAILRH  200
            D    V + LE Y+FP+IG  ++ +L T++LL P+KK ++ G  ++A R++Q +TAI+R 
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  201  AVQQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLNLL  260
            AVQ+  +  NPA DM GA+    + H PAL    +P +L R+ AY+GR +T +A+ L+LL
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  261  IFIRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRQHFVPLCRQALKIL  320
             F+RSSELRFARW E+DF   LW +P +RE I  V+ S RG KMK +H+VPL RQA+ +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  321  KELRQLTYEEGNEAELIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSA  380
             +L+Q++     + EL+F G  D+ K MSENT+N ALR MGYDT  ++CGHGFRT+A +A
Sbjct  297  EQLKQIS----GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGA  352

Query  381  LIESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDENRYEMVRPF  440
            L ESGLWS+DA+E Q+SH E N+VRAAY H + HLD+RRLM+QWWAD+LD  +YE + P+
Sbjct  353  LGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

Query  441  EFAQ  444
            E+A+
Sbjct  413  EYAR  416

233) SEN1970 in NC_011294


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  348 bits (1306),  Expect = 5e-97, Method: Compositional matrix adjust.
 Identities = 206/424 (49%), Positives = 301/424 (71%), Gaps = 10/424 (2%)

Query  1    MSLTDTKVKNTRPSEKAVKLTDGFGLYLLVHPNGSKYWQLGYR--FDGKQKVFSIGVYPA  58
            M L   +V  ++P +K+ K++DG GLYL V ++GSKYW++ YR   D K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQRRDEAKRLLTQGIDPNAKKQADEKVLQEKRDKTRSFRVVAKSWFATKTKWSE  118
            V+LA+AR +RDEAK+LL QGIDP++    ++K  Q     + +F  +A+ W A++ +WSE
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKT----EQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYADTVWKRLETYVFPDIGDRNVSELDTGDLLVPVKKAETLGYLEIAMRIKQYITAILRH  178
            D    V + LE Y+FP+IG  ++ +L T++LL P+KK ++ G  ++A R++Q +TAI+R 
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLNLL  238
            AVQ+  +  NPA DM GA+    + H PAL    +P +L R+ AY+GR +T +A+ L+LL
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  239  IFIRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRQHFVPLCRQALKIL  298
             F+RSSELRFARW E+DF   LW +P +RE I  V+ S RG KMK +H+VPL RQA+ +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  299  KEIRQLTYEEGNEAELIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSA  358
             +++Q++     + EL+F G  D+ K MSENT+N ALR MGYDT  ++CGHGFRT+A +A
Sbjct  297  EQLKQIS----GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGA  352

Query  359  LIESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDENRYEMVRPF  418
            L ESGLWS+DA+E Q+SH E N+VRAAY H + HLD+RRLM+QWWAD+LD  +YE + P+
Sbjct  353  LGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

Query  419  EFAQ  422
            E+A+
Sbjct  413  EYAR  416

234) SPUCDC_0925 in NC_022221


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  348 bits (1306),  Expect = 5e-97, Method: Compositional matrix adjust.
 Identities = 206/424 (49%), Positives = 301/424 (71%), Gaps = 10/424 (2%)

Query  1    MSLTDTKVKNTRPSEKAVKLTDGFGLYLLVHPNGSKYWQLGYR--FDGKQKVFSIGVYPA  58
            M L   +V  ++P +K+ K++DG GLYL V ++GSKYW++ YR   D K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQRRDEAKRLLAQGIDPNAKKQADEKVLQEKRDKTRSFRVVAKSWFATKTKWSE  118
            V+LA+AR +RDEAK+LL QGIDP++    ++K  Q     + +F  +A+ W A++ +WSE
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKT----EQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYADTVWKRLETYVFPDIGDRNVSELDTGDLLVPVKKAETLGYLEIAMRIKQYITAILRH  178
            D    V + LE Y+FP+IG  ++ +L T++LL P+KK ++ G  ++A R++Q +TAI+R 
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLNLL  238
            AVQ+  +  NPA DM GA+    + H PAL    +P +L R+ AY+GR +T +A+ L+LL
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  239  IFIRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRQHFVPLCRQALKIL  298
             F+RSSELRFARW E+DF   LW +P +RE I  V+ S RG KMK +H+VPL RQA+ +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  299  KEIRQLTYEEGNEAELIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSA  358
             +++Q++     + EL+F G  D+ K MSENT+N ALR MGYDT  ++CGHGFRT+A +A
Sbjct  297  EQLKQIS----GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGA  352

Query  359  LIESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDENRYEMVRPF  418
            L ESGLWS+DA+E Q+SH E N+VRAAY H + HLD+RRLM+QWWAD+LD  +YE + P+
Sbjct  353  LGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

Query  419  EFAQ  422
            E+A+
Sbjct  413  EYAR  416

235) SPUL_0925 in NC_016831


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  348 bits (1306),  Expect = 5e-97, Method: Compositional matrix adjust.
 Identities = 206/424 (49%), Positives = 301/424 (71%), Gaps = 10/424 (2%)

Query  1    MSLTDTKVKNTRPSEKAVKLTDGFGLYLLVHPNGSKYWQLGYR--FDGKQKVFSIGVYPA  58
            M L   +V  ++P +K+ K++DG GLYL V ++GSKYW++ YR   D K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQRRDEAKRLLAQGIDPNAKKQADEKVLQEKRDKTRSFRVVAKSWFATKTKWSE  118
            V+LA+AR +RDEAK+LL QGIDP++    ++K  Q     + +F  +A+ W A++ +WSE
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKT----EQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYADTVWKRLETYVFPDIGDRNVSELDTGDLLVPVKKAETLGYLEIAMRIKQYITAILRH  178
            D    V + LE Y+FP+IG  ++ +L T++LL P+KK ++ G  ++A R++Q +TAI+R 
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLNLL  238
            AVQ+  +  NPA DM GA+    + H PAL    +P +L R+ AY+GR +T +A+ L+LL
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  239  IFIRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRQHFVPLCRQALKIL  298
             F+RSSELRFARW E+DF   LW +P +RE I  V+ S RG KMK +H+VPL RQA+ +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  299  KEIRQLTYEEGNEAELIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSA  358
             +++Q++     + EL+F G  D+ K MSENT+N ALR MGYDT  ++CGHGFRT+A +A
Sbjct  297  EQLKQIS----GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGA  352

Query  359  LIESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDENRYEMVRPF  418
            L ESGLWS+DA+E Q+SH E N+VRAAY H + HLD+RRLM+QWWAD+LD  +YE + P+
Sbjct  353  LGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

Query  419  EFAQ  422
            E+A+
Sbjct  413  EYAR  416

236) int in NC_011740


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  348 bits (1305),  Expect = 6e-97, Method: Compositional matrix adjust.
 Identities = 216/418 (52%), Positives = 314/418 (76%), Gaps = 6/418 (1%)

Query  26   LSPKQIENAKPKTNDYKLTDGGSLYLLVRKTGGKYWRMNYR--FDGKQVTLALGVYPDVS  83
            L+++Q+E AKPK + YK++DGG+LYL V   G+KYWRM+YR   D K+  LA+GV P V+
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  84   LATARKRRDEARQLLADGRDPR-EAKKPKKEDPISPTFESVAREWHSGTMGHPEWKEITR  142
            LA AR +RDEA++LL +G DP+ E K ++ E++ + TFE++AREWH++      W E  R
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNK---RWSEDHR  119

Query  143  KKILREMENHLFPAIGSKPIDTLKTRDLMPMLVEMTEKGIGATTSRVKTTMTSIFRYAVQ  202
             ++LR +E  +FP IGS  I  LKT +L++ +  +   G    + R++  +T+I RYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  203  RGIVDYNPAHDLKGAITAPKVRHrpalplerlpellaKTRSYTGRPLTRLAVLFSLHTFV  262
             + +D NPA D+ GA+++ K RH PALP  R+PE+LA+  +Y GR +TR+AV +SL TFV
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  263  RSSELRHARWEEIDIENGLWTIPGQREEIAGVKFSDRGAKMGAAHYVPLSSQAIGVLEDI  322
            RSSELR ARW+E+D++++LW +P++REEI GV++S RG KM   H VPLS QA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  323  RKISGEYLLVFPGDSNPYKPMSENTVNKALRTMGYDTQTDVCLHGFRAMACSALTESGLW  382
            ++ISG+  L+FPGD ++ K MSENTVN ALR+MGYDT+T+VC HGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  383  SRDAVERQMSHQERNEVRAAYVHLAQHMQERRRMMQWWSNYLELNKDEFHAPYDLSGI  440
            S DA+ERQ+SH ERN+VRAAY+H ++H++ERR M+QWW++YL++ + E  +PY+ + +
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

237) I137_04205 in NC_021984


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  348 bits (1305),  Expect = 6e-97, Method: Compositional matrix adjust.
 Identities = 206/424 (49%), Positives = 301/424 (71%), Gaps = 10/424 (2%)

Query  19   MSLTDTKVKNTRPSEKAVKLTDGFGLYLLVHPNGSKYWQLGYR--FDGKQKVFSIGVYPA  76
            M L   +V  ++P +K+ K++DG GLYL V ++GSKYW++ YR   D K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  77   VSLADARQRRDEAKRLLAQGIDPNAKKQADEKVLQEKRDKTRSFRVVAKSWFATKTKWSE  136
            V+LA+AR +RDEAK+LL QGIDP++    ++K  Q     + +F  +A+ W A++ +WSE
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKT----EQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  137  DYADTVWKRLETYVFPDIGDRNVSELDTGDLLVPVKKAETLGYLEIAMRIKQYITAILRH  196
            D    V + LE Y+FP+IG  ++ +L T++LL P+KK ++ G  ++A R++Q +TAI+R 
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  197  AVQQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLNLL  256
            AVQ+  +  NPA DM GA+    + H PAL    +P +L R+ AY+GR +T +A+ L+LL
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  257  IFIRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRQHFVPLCRQALKIL  316
             F+RSSELRFARW E+DF   LW +P +RE I  V+ S RG KMK +H+VPL RQA+ +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  317  KEIRQLTYEEGNEAELIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSA  376
             +++Q++     + EL+F G  D+ K MSENT+N ALR MGYDT  ++CGHGFRT+A +A
Sbjct  297  EQLKQIS----GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGA  352

Query  377  LIESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDENRYEMVRPF  436
            L ESGLWS+DA+E Q+SH E N+VRAAY H + HLD+RRLM+QWWAD+LD  +YE + P+
Sbjct  353  LGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

Query  437  EFAQ  440
            E+A+
Sbjct  413  EYAR  416

238) SeD_A2305 in NC_011205


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  347 bits (1303),  Expect = 8e-97, Method: Compositional matrix adjust.
 Identities = 206/424 (49%), Positives = 301/424 (71%), Gaps = 10/424 (2%)

Query  1    MSLTDTKVKNTRPSEKAVKLTDGFGLYLLVHPNGSKYWQLGYR--FDGKQKVFSIGVYPA  58
            M L   +V  ++P +K+ K++DG GLYL V ++GSKYW++ YR   D K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQRRDEAKRLLAQGIDPNAKKQADEKVLQEKRDKTRSFRVVAKSWFATKTKWSE  118
            V+LA+AR +RDEAK+LL QGIDP++    ++K  Q     + +F  +A+ W A++ +WSE
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKT----EQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYADTVWKRLETYVFPDIGDRNVSELDTGDLLVPVKKAETLGYLEIAMRIKQYITAILRH  178
            D    V + LE Y+FP+IG  ++ +L T++LL P+KK ++ G  ++A R++Q +TAI+R 
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLNLL  238
            AVQ+  +  NPA DM GA+    + H PAL    +P +L R+ AY+GR +T +A+ L+LL
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  239  IFIRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRQHFVPLCRQALKIL  298
             F+RSSELRFARW E+DF   LW +P +RE I  V+ S RG KMK +H+VPL RQA+ +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  299  KEIRQLTYEEGNEAELIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSA  358
             +++Q++     + EL+F G  D+ K MSENT+N ALR MGYDT  ++CGHGFRT+A +A
Sbjct  297  EQLKQIS----GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGA  352

Query  359  LIESGLWSEDAVELQMSHKESNSVRAAYPHKAKHLDQRRLMLQWWADFLDENRYEMVRPF  418
            L ESGLWS+DA+E Q+SH E N+VRAAY H + HLD+RRLM+QWWAD+LD  +YE + P+
Sbjct  353  LGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

Query  419  EFAQ  422
            E+A+
Sbjct  413  EYAR  416

239) Dd703_3412 in NC_012880


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  347 bits (1302),  Expect = 9e-97, Method: Compositional matrix adjust.
 Identities = 224/416 (54%), Positives = 301/416 (73%), Gaps = 3/416 (0%)

Query  1    MLTDSKVRSAKPLAKSYKLTDSQGLYLTVSPSGAKLWYFRYRFGG--KENRLAFGPYPQT  58
             L   +V +AKP  K+YK++D+ GLYL VS+ G+K W  +YR  +  KE+RLAFG  P  
Sbjct  2    KLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTV  61

Query  59   TlaearekrdaarkllaSGISPSQLRKTNNLAADESRTFQYLAQTWHTSSLKLWSEAHAD  118
            TLA+AR KRD A+KLL  GI P   +K  +     + TF+ +A+ WH+S+ K WSE H  
Sbjct  62   TLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASN-KRWSEDHRS  120

Query  119  KILTCLKRYVFPAIGAMDIAQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQ  178
            ++L  L  Y+FP IG+ DI Q+ T HL   +K +D  G HDVA R++Q++T IMR AVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GVIKYNPAYDLDGVVTPVATQHHPAlplkrlpellekMENYKGRMLTRLALELNLHVFLR  238
            + I  NPA D+ G ++   ++H PALP  R+PE+L ++  Y+GR++TR+A+EL+L  F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWDEFNLKAHLWSVPAQREAVDGVRFSERGAKMKDEHLVPLSRQAVALLKQIQ  298
            SSELRFARWDEF++   LW VPA+RE + GVR+S RG KMK+EH+VPLSRQA+ LL Q++
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  AISGESVFVFPGAHTLNKPMSENTINKALRVIGYDTKSEVCGHGFRTMACSALNESGRWS  358
             ISG+  ++FPG H   K MSENT+N ALR +GYDTK+EVCGHGFRTMA +AL ESG WS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  KDAIERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYAR  414
             DAIERQ+SH ERN VRAAY+H +EHL+ R  M+QWW+DYLD+ +   ++PY YAR
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

240) Dd1591_3537 in NC_012912


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  346 bits (1300),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 221/416 (54%), Positives = 303/416 (73%), Gaps = 3/416 (0%)

Query  1    MLTDSKVRSAKPLTKSYKLTDSQGLYLTVSPSGAKLWYFRYRFGG--KESRLAFGPYPQT  58
             L   +V +AKP  K+YK++D+ GLYL VS+ G+K W  +YR  +  KE RLAFG  P  
Sbjct  2    KLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTV  61

Query  59   TlaearekrdaarkllaSGISPSQLRKANNPAVDESRTFQYVAQAWHTSSLKLWSDAHAD  118
            TLA+AR KRD A+KLL  GI P   +K  ++    + TF+ +A+ WH+S+ K WS+ H  
Sbjct  62   TLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASN-KRWSEDHRS  120

Query  119  KILTCLKRYVFPTIGAMDISQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQ  178
            ++L  L  Y+FP IG+ DI Q+ T HL   +K +D  G HDVA R++Q++T IMR AVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GVIKYNPAYDLDGVVTLVVTQHHPAlplkrlpellekIESYKGRMLTRLALELNLHVFLR  238
            + I  NPA D+ G ++   ++H PALP  R+PE+L ++ +Y+GR++TR+A+EL+L  F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWDEFNLKAHIWSVPAQREAVNGVRFSERGAKMKDEHLVPLSRQAVALLKQIQ  298
            SSELRFARWDEF++   +W VPA+RE ++GVR+S RG KMK+EH+VPLSRQA+ LL Q++
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  ALSGESVFVFPGAHTLNKPMSENTINKALRVIGYDTKTEICGHGFRTMACSALNESGRWS  358
             +SG+  ++FPG H   K MSENT+N ALR +GYDTKTE+CGHGFRTMA +AL ESG WS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  KDAIERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYAR  414
             DAIERQ+SH ERN VRAAY+H +EHL+ R  M+QWW+DYLD+ +   ++PY YAR
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

241) ECNA114_2039 in NC_017644


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  346 bits (1300),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 200/417 (48%), Positives = 297/417 (72%), Gaps = 3/417 (0%)

Query  1    MSLTSAKIRTLKPSDKPFKVSDSHGLYLRVKPGGSRHWYLKYRISG--KESRIALGTYPA  58
            M L + ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

242) KPN2242_15195 in NC_017540


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  346 bits (1300),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 195/417 (47%), Positives = 296/417 (71%), Gaps = 3/417 (0%)

Query  1    MSLNDSKIRNLKPSAKPFKVSDSNGLYLLIKPGGSRHWYLKYR--INGKESRIALGAYPA  58
            M LN  ++   KP  K +K++D+ GLYL + + GS+ W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQREGIRKMLALNINPAQQRASERRACTPEKVFKTVALAWHKNNKKWSQNTAD  118
            V+L++AR +R+  +K+L   I+P  ++   +   +    F T+A  WH +NK+WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASMNNHIFPVIGHLSVTELKPHHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  ++  IFP IG   + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GFIDTNPAANLDGVTAPPMRHHYPALPLERLPELIEHIEAYHQGREltrlavlltlhlFI  238
            ++ID+NPA+++ G  +    +HYPALP  R+PE++ ++ AY+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFINRIWTIPATREAIVGVRYSGRGAKMRTAHIVPLSQQAIAILKRI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS+QA+ +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KEISGAYELVFPGDHNPYRPMCENAVNKALRLMGFDTKQDICGHGFRAMACSALMESGLW  358
            K+ISG  EL+FPGDH++ + M EN+VN ALR MG+DTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SQDAVERQMSHQERNTVRLAYIHKAEHLEARKAMMQWWSDYIDTCRVAYVPPFNTGR  415
            S+DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DY+D  +   + P++ +R
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

243) SBO_1221 in NC_007613


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  346 bits (1298),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 210/417 (51%), Positives = 297/417 (72%), Gaps = 3/417 (0%)

Query  1    MSLNDSKIRNLKPSSKPVKLSDSHGLYLLVNQGGSRIWYLKYRFSG--KESRVSLGAYPL  58
            M LN  ++   KP  K  K++D+ GLYL V+  GS+ W +KYR ++  KE R+++G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAEARQRRDDIRKLLTQNINPAHQRMSDKAAASPEKYFKAVALAWHKTNKKWSPDYAA  118
            V+LA+AR +RD+ +KLL Q I+P  ++   +A  S    F ++A  WH +NK+WS D  +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RILASMENHIFPAIGHLPVTTLKTQNFTALLRVIEDKGFLEVASRTRQQLCNIMRYAVQQ  178
            R+L  +E  IFP IG   +  LKT ++ A ++ ++  G  +VA R +Q++  IMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GFTENNLAQHLEGVTAPPVKNHYPAlplerlpelferIGDYQQGRQLTRLAVVLTLHLFI  238
            ++ ++N A ++ G  +     HYPALP  R+PE++ R++ Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWGEIDFRNKIWTIPATREAIEKVRFSGRGAKMRTPYIVPLSRQAIAILKQI  298
            RSSELRFARW+E+DF + +W +PA RE I  VR+S RG KM+   IVPLSRQA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KEISGHLELVFPGDHNPYKPMSENTVNRALRLMGYDTKTDVCGHGFRTMACSALVETELW  358
            K+ISG+ EL+FPGDH++ K MSENTVN ALR MGYDTKT+VCGHGFRTMA +AL E+ LW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDTVERQMSHQERNSVRAAYIHRAEHLDARTAMMQWWSDYLDVSREGYVAPYIYAR  415
            S D++ERQ+SH ERN+VRAAYIH +EHLD R  M+QWW+DYLD+ +   ++PY YAR
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

244) SeAg_B2068 in NC_011149


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  345 bits (1295),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 208/424 (50%), Positives = 300/424 (71%), Gaps = 10/424 (2%)

Query  1    MSLTDTKVKNARPAEKAVKLTDGFGLYLLVHPNGSKYWQLGYR--FDGKQKVFSIGVYPA  58
            M L   +V  A+P +K+ K++DG GLYL V ++GSKYW++ YR   D K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQRRDEAKKLLAQGIDPNAKKQADEKALQEKRDKTRSFRVVARSWFATKTKWSE  118
            V+LA+AR +RDEAKKLL QGIDP++    ++K  Q     + +F  +AR W A++ +WSE
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKT----EQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYADTVWKRLETYVFPDIGDSNVSDLDTGDLLVPVKKAETLGYLEIAMRIKQYITAILRH  178
            D    V + LE Y+FP+IG S++ +L T++LL P+KK ++ G  ++A R++Q +TAI+R 
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLNLL  238
            AVQ+  +  NPA DM GA+    + H PAL    +P +L R+ AY+GR +T +A+ L+LL
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  239  IFIRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRQHFVPLCQQAITIL  298
             F+RSSELRFARW E+DF   LW +P +RE I  V+ S RG KMK +H+VPL +QA+ +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  299  KEIRQLTYEEGNDAGLIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSA  358
             +++Q++     D  L+F G  D+ K MSENT+N ALR MGYDT  ++CGHGFRT+A +A
Sbjct  297  EQLKQIS----GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGA  352

Query  359  LIESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDANRDEMVRPF  418
            L ESGLWS+DA+E Q+SH E N+VRAAY H + HLD+RRLM+QWWAD+LD  + E + P+
Sbjct  353  LGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

Query  419  EFAQ  422
            E+A+
Sbjct  413  EYAR  416

245) int in NC_011750


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  345 bits (1296),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 199/417 (48%), Positives = 297/417 (72%), Gaps = 3/417 (0%)

Query  1    MSLTSAKIRTLKPSDKPFKVSDSHGLYLRVKPGSSRHWYLKYRISG--KESRIALGTYPA  58
            M L + ++ T KP DK +K++D+ GLYL V + +S+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

246) CE10_2255 in NC_017646


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  345 bits (1296),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 199/417 (48%), Positives = 297/417 (72%), Gaps = 3/417 (0%)

Query  1    MSLTSAKIRTLKPSDKPFKVSDSHGLYLRVKPGSSRHWYLKYRISG--KESRIALGTYPA  58
            M L + ++ T KP DK +K++D+ GLYL V + +S+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

247) NRG857_09860 in NC_017634


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  345 bits (1296),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 199/417 (48%), Positives = 297/417 (72%), Gaps = 3/417 (0%)

Query  1    MSLTSAKIRTLKPSDKPFKVSDSHGLYLRVKPGSSRHWYLKYRISG--KESRIALGTYPA  58
            M L + ++ T KP DK +K++D+ GLYL V + +S+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

248) int in NC_012731


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  345 bits (1295),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 200/417 (48%), Positives = 296/417 (71%), Gaps = 3/417 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIEGYHQGRELTRLAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R+ +Y+ GR +TR+AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSERGAKMRMPHIVPLSEQAIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS QA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELVFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

249) PPS_0628 in NC_015733


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  345 bits (1295),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 213/419 (51%), Positives = 303/419 (73%), Gaps = 4/419 (0%)

Query  6    VPLTDPKCDAAKPREKDYKLFDGKGLYLLVKPSGVKTWRMKYTKP-DGRDGLATFGNYPA  64
            + L   + ++AKP++K YK+ DG GLYL V + G K WRMKY +P D +++  +FG  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  65   LGLKaarerraqalellaaGKDPIEQARLDKQEAANARANTFRLLAQEWHAACARKWTPG  124
            + L  AR +R +A  LL  G DP  + +    +A N+ A TF  +A+EWHA   ++W+ +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQK--EAQAENSGAYTFETIAREWHA-SNKRWSED  117

Query  125  HAATVWRRIESHLLPTLGDRPVAELKTRDLLVPLKAAEKRDTLDTAARLRQYMTGILRMA  184
            H + V R +E  ++P +G   + +LKT +LL P+K  +  +  D A RL+Q +T+I+R A
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  185  VQHGHLDFNPAIDLQGATATRKTAHRPALPFDRLPELLQRIDADSGRGLTKLAVQLTLLV  244
            VQ++ +D NPA D+ GA +T K+ H PALP  R+PE+L R+ A  GR +T++AV+L+LL 
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  245  FIRSSELRFARWGEIDMGRLMWEIPGERAPIEGVKNSHRGSKMSTPHLVPLSRQSVSVLE  304
            F+RSSELRFARW+E+D ++ +W +P+ R  I GV+ S RG KM   H+VPLSRQ++ +LE
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  305  RIRDLTGRFDLVFAGDHHHWKPMSENTVNKALRRMGYDTKSEVCGHGFRTMACSALVESG  364
            ++++++G  +L+F+GDH+  K MSENTVN ALR MGYDTK+EVCGHGFRTMA +AL ESG
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  365  LWSKDAVERQMSHQERNTVRAAYIHKAEHIQERRLMVQWWADYLDANRVEAITPYDFAH  423
            LWS DA+ERQ+SH ERN VRAAYIH +EH++ERRLMVQWWADYLD  + E ITPY++A+
Sbjct  358  LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

250) E2348C_2119 in NC_011601


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  345 bits (1294),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 208/424 (50%), Positives = 300/424 (71%), Gaps = 10/424 (2%)

Query  1    MSLTDTKVKNARPAEKAVKLTDGFGLYLLLHPNGSKYWQLGYR--FDGKQKVFSIGVYPA  58
            M L   +V  A+P +K+ K++DG GLYL + ++GSKYW++ YR   D K+  +++GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQRRDEAKKLLAQGIDPNAKKQADEKALQEKRDKTRSFRVVARSWFATKTKWSE  118
            V+LA+AR +RDEAKKLL QGIDP++    ++K  Q     + +F  +AR W A++ +WSE
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKT----EQKEAQAENSGAYTFETIAREWHASNKRWSE  116

Query  119  DYADTVWKRLETYVFPDIGDSNVSDLDTGDLLVPVKKAETLGYLEIAMRIKQYITAILRH  178
            D    V + LE Y+FP+IG S++ +L T++LL P+KK ++ G  ++A R++Q +TAI+R 
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLNLL  238
            AVQ+  +  NPA DM GA+    + H PAL    +P +L R+ AY+GR +T +A+ L+LL
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  239  IFIRSSELRYARWSEIDFNSKLWVIPEKREVIERVKYSTRGAKMKRQHFVPLCRQALKIL  298
             F+RSSELR+ARW E+DF+  LW +P KRE I  V+YS RG KMK +H+VPL RQA+ +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  299  KEIRQLTYEEGNDAGLIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSA  358
             +++Q++     D  L+F G  D+ K MSENT+N ALR MGYDT  ++CGHGFRT+A +A
Sbjct  297  EQLKQIS----GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGA  352

Query  359  LIESGLWSKDAVELQMSHKESNSVRAAYTHKAKHLEQRRLMLQWWADYLDANRDGMVRPF  418
            L ESGLWS DA+E Q+SH E N+VRAAY H + HL++RRLM+QWWADYLD  +   + P+
Sbjct  353  LGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

Query  419  EFAQ  422
            E+A+
Sbjct  413  EYAR  416

251) int in NC_011751


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  345 bits (1295),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 201/417 (49%), Positives = 297/417 (72%), Gaps = 3/417 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMSENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K MSENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

252) KPHS_34600 in NC_016845


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  345 bits (1295),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 201/417 (49%), Positives = 297/417 (72%), Gaps = 3/417 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMSENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K MSENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

253) CKO_00917 in NC_009792


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  345 bits (1295),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 200/417 (48%), Positives = 296/417 (71%), Gaps = 3/417 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

254) ST548_p7779 in NC_020181


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  345 bits (1295),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 200/417 (48%), Positives = 296/417 (71%), Gaps = 3/417 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

255) A79E_1712 in NC_018522


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  345 bits (1295),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 200/417 (48%), Positives = 296/417 (71%), Gaps = 3/417 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

256) ROD_20671 in NC_013716


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  344 bits (1293),  Expect = 5e-96, Method: Compositional matrix adjust.
 Identities = 214/417 (52%), Positives = 296/417 (71%), Gaps = 3/417 (0%)

Query  1    MSLNDSKIRNFKSPSRPVKLSDSHGLYLLVKPGGSRIWYLKYR--FNGKESRVSLGAYPL  58
            M LN  ++   K+  +  K++D+ GLYL V + GS+ W +KYR   + KE R+++G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAEARLQRDGIRKLLAQNISPAQQRVaakaaaSPEKCFEAVALAWHKTNKKWSADYAE  118
            V+LA+AR +RD  +KLL Q I P  ++  A+A  S    FE++A  WH +NK+WS D   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RILASMKNHIFPAIGHMPVTLLKTQHFTALLKVIEDKGFLEVASRTRQQLCNIMRYAVQQ  178
            R+L  +   IFP IG   +  LKT H+ A +K ++  G  +VA R +Q++  IMRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GFIENNPAQHLEGVTAPPVKNHYPAlplerlpellerIGDYQQGRQLTRLAVVLTLHLFI  238
            ++I++NPA ++ G  +     HYPALP  R+PE+L R++ Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFRNKIWTIPATRETIEKVRFSGRGAKMHTPHIVPLSRQAIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I  VR+S RG KM   HIVPLSRQA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  NEISGHLELVFPGDHNPYKPMSENTINRALRLMGYDTKTDVCGHGFRAMACSALVESELW  358
            ++ISG+ EL+FPGDH++ K MSENT+N ALR MGYDTKT+VCGHGFR+MA +AL ES LW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SRDAVERQMSHQERNSVRAAYIHRAEHLDARKDMMQWWSDYLDVSREGYVAPYIYAR  415
            S DA+ERQ+SH ERN+VRAAYIH +EHLD R+ M+QWW+DYLD+ +   ++PY YAR
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

257) KPK_1842 in NC_011283


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  344 bits (1293),  Expect = 5e-96, Method: Compositional matrix adjust.
 Identities = 204/413 (50%), Positives = 294/413 (72%), Gaps = 3/413 (0%)

Query  1    MSLSDAKIRTLKPTDKPFKVADSHGLYLLIKPGGSRHWYLKYR--INGKESRIALGAYPA  58
            M L+  ++ T KP DK +K+AD+ GLYL + + GS+ W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQREGIRKMLALNINPAQQRAAERGACTPEKLFKTVALAWHKSNTKWSKNTAD  118
            V+L++AR +R+  +K+L   I+P  ++   ++  +    F T+A  WH SN +WS +   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHVFPVIGHLSVSELKPRHFIDllkgiekkglleVASRTRQHLSNIMRYAVHQ  178
            R+L  L+  +FP IG   + +LK  H++  +K ++  G  +VA R +Q+++ IMRYAV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GVIDSNPAANLDGVTTPPVRRHYPAlplerlpelieriDGYHQGRELTRLAVLLTLHVFI  238
            + IDSNPA+++ G  +    RHYPALP  R+PE++ R+ +Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFRNRVWTIPGTREAIEGVRYSGRGAKMRTPHIVPLSEQAIAILKRI  298
            RSSELRFARW E+DF + +W +P+ RE I GVRYS RG KM+  HIVPLS QA+ +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  RDISGDGELVFPGDHNPYKPMCENTVNKALRLMGYDTKKDICGHGFRAMACSALMESGLW  358
            ++ISGD EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SQDAVERQMSHQERNTVRLAYIHKAEHLDARKAMMQWWSDYLDTCREAYVPPY  411
            S+DA+ERQ+SH ERN VR AYIH +EHLD R+ M+QWW+DYLD  +   + PY
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

258) Entas_3110 in NC_015968


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  344 bits (1292),  Expect = 6e-96, Method: Compositional matrix adjust.
 Identities = 207/415 (50%), Positives = 311/415 (75%), Gaps = 8/415 (1%)

Query  6    LSPKKVENAKPKETDYKLTDGGSLYLLVKKNGTKAWRMNYR--FNGKQATLALGVFPDVS  63
            L++++VE AKPK+  YK++DGG+LYL V  +G+K WRM+YR   + K+  LA+GV P V+
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  64   LALARKRRDEARQLLADGVDPRVSKRAAPTEPSSA-TFQTIALEWHKGSIGHPSWKEITR  122
            LA AR +RDEA++LL +G+DP+  ++ A +E S+A TF+TIA EWH    ++  W E  R
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWH---ASNKRWSEDHR  119

Query  123  IKILREMENHIFPFIGNKPIDSLKTSDLLPLLVRMSDQGIGATTGRVKTTLASVFRYAIQ  182
             ++LR +E  IFP IG+  I  LKTS+LL+ + ++   G    + R++  ++++ RYA+Q
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  183  RGIVEYNPTHDLRGAIASPKIKHrpalplerlpelISKIDSYTGRPLTKLAVLFSLHTFV  242
             + ++ NP+ D+ GA+++ K +H PALP  R+PE+++++ +Y GR +T++AV +SL TFV
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  243  RSSELRHARWEEINFETAMWTIPAQRKRIEGVKYSERGAKMGSIHYVPLSNEAIDVLEAI  302
            RSSELR ARW+E++F+ ++W +PA+R  I GV+YS RG KM   H VPLS +A+ +LE +
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  303  KKISGEYELIFPGDSNPYKPMSENTVNKSLRIMGYDTQADICLHGFRAMACSALTESGLW  362
            K+ISG+ EL+FPGD ++ K MSENTVN +LR MGYDT++++C HGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  363  SRDAVERQMSHQERNEVRAAYVHLAQHMQERRRMMQWWSHYI-ISNCESYIAPYE  416
            S DA+ERQ+SH ERN+VRAAY+H ++H++ERR M+QWW++Y+ I + E  I+PYE
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEH-ITPYE  413

259) YpAngola_A2104 in NC_010159


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  344 bits (1290),  Expect = 9e-96, Method: Compositional matrix adjust.
 Identities = 199/417 (48%), Positives = 297/417 (72%), Gaps = 3/417 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRGMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR+MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH E+N VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

260) KPK_1811 in NC_011283


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  343 bits (1289),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 206/414 (50%), Positives = 298/414 (72%), Gaps = 3/414 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYILVKPGGSRHWYLKYR--INGKESRLGLGAYPN  58
            M L   ++ T KP DK +K++D+ GLY+ V + GS+ W +KYR   + KE RL++G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLTDARQQRDDIRKLLAQKINPAQQRLTEKAARSPEKAFKAVALNWHKSNKTWSEDHAN  118
            V+L++AR +RD+ +KLL Q I+P  ++   +A  S   +F ++A +WH SNK WSEDH +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLGRMNNHIFPIIGHLTVTELKVQHFINLLKGVENKGLLEIASRTRQYISSIMRHALHQ  178
            RVL  ++  IFP IG   + +LK  H++  +K V+  G  ++A R +Q +++IMR A+++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIEHNPAADLKGVTVPPIKRHYPAlplerlpellkrIDDYKQGRELTQLAIMLSLHVFI  238
            + I+ NPA+D+ G       RHYPALP  R+PE+L R+  Y+ GR +T++A+ LSL  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWPEINFRNRLWTIPATRETIPNVRNSGRGAKMRAQHIVPLSQQAIDILKQI  298
            RSSELRFARW E++F + LW +PA RE I  VR S RG KM+ +HIVPLS+QA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  REISGDQVLIFPSIRDPYKPMSENTINKALRLMDYDTKEDVCGHGFRAMACSALIESGLW  358
            ++ISGD+ L+FP+ +D+ K MSENT+N ALR M+YDTK +VCGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SEDAIERQMSHQERNSVRAAYIHKAEHLEARKAMMQWWSDYIDECREKYVPPYN  412
            S+DAIERQ+SH ERN+VRAAYIH +EHL+ R+ M+QWW+DY+D  +   + PY+
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYE  413

261) YPA_1295 in NC_008150


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  343 bits (1289),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 199/417 (48%), Positives = 296/417 (71%), Gaps = 3/417 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH E+N VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

262) int2 in NC_005810


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  343 bits (1289),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 199/417 (48%), Positives = 296/417 (71%), Gaps = 3/417 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH E+N VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

263) int in NC_003143


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  343 bits (1289),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 199/417 (48%), Positives = 296/417 (71%), Gaps = 3/417 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH E+N VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

264) int in NC_017154


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  343 bits (1289),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 199/417 (48%), Positives = 296/417 (71%), Gaps = 3/417 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH E+N VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

265) int in NC_017160


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  343 bits (1289),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 199/417 (48%), Positives = 296/417 (71%), Gaps = 3/417 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH E+N VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

266) y2393 in NC_004088


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  343 bits (1289),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 199/417 (48%), Positives = 296/417 (71%), Gaps = 3/417 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH E+N VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

267) YPDSF_1208 in NC_009381


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  343 bits (1289),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 199/417 (48%), Positives = 296/417 (71%), Gaps = 3/417 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYPA  58
            M L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFI  238
            + ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQI  298
            RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLW  358
            K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AKDAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            + DA+ERQ+SH E+N VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

268) PC1_0501 in NC_012917


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  343 bits (1286),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 221/420 (53%), Positives = 302/420 (72%), Gaps = 3/420 (0%)

Query  1    MLTDSKVRSAKHLAKSYKLTDSQGLYLTVSPSGAKLWYFRYRFGG--KENRLAFGPYPQI  58
             L   +V +AK   K+YK++D+ GLYL VS+ G+K W  +YR  +  KE+RLAFG  P +
Sbjct  2    KLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTV  61

Query  59   TlaearekrdaarkllaSGLSPSQLRKSNNPAVEESRTFQYVAMTWHTSSLKLWSEAHAD  118
            TLA+AR KRD A+KLL  G+ P   +K  ++    + TF+ +A  WH+S+ K WSE H  
Sbjct  62   TLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASN-KRWSEDHRS  120

Query  119  KILTCLKRYVFPAIGSMDIAQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQ  178
            ++L  L  Y+FP IGS DI Q+ T HL   +K +D  G HDVA R++Q++T IMR AVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GVIKYNPAYDLDGVVTPVVTQHHPAlplkrlpellekIENYKGRMLTRLALELNLHVFLR  238
            + I  NPA D+ G ++   ++H PALP  R+PE+L ++  Y+GR++TR+A+EL+L  F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWDEFNLKAHIWSVPAQREAVNGVRFSERGAKMKDEHLVPLSRQAVALLKQIQ  298
            SSELRFARWDEF++   +W VPA+RE ++GVR+S RG KMK+EH+VPLSRQA+ LL Q++
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  AYSGESVFVFPGAHTLNKPMSENTINKALRVIGYDTKTEICGHGFRTMACSALNESGRWS  358
              SG+  ++FPG H   K MSENT+N ALR +GYDTKTE+CGHGFRTMA +AL ESG WS
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  359  KDAIERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYARNYTV  418
             DAIERQ+SH ERN VRAAY+H +EHL+ R  M+QWW+DYLD+ +   ++PY YAR   +
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCNI  420

269) intB in NC_021505


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  343 bits (1286),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 209/410 (51%), Positives = 295/410 (72%), Gaps = 4/410 (0%)

Query  15   TAKPRDRAYKLFDGGGMYLYVAPCGSKTWRLRYFKPNGK-EGTLIIGKYPIVSLAVARIK  73
            TAKP+D++YK+ DGGG+YL V++ GSK WR++Y +P++K E+ L +G  P V+LA AR K
Sbjct  10   TAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAK  69

Query  74   RDEAKALLLDNLDPMEEKQKAKIAAQRASLLFETVALEWHVEMSRRWTEGHAKTVLSRLR  133
            RDEAK LL++ +DP  E QK   A + ++  FET+A EWH   ++RW+E+H   VL  L 
Sbjct  70   RDEAKKLLVQGIDPKTE-QKEAQAENSGAYTFETIAREWHAS-NKRWSEDHRSRVLRYLE  127

Query  134  AHVFPLIGQRPIAELDTHDLLEVTQRIKDRGTMDVALRVQNYLSTIMRGAKRARQITQNP  193
              +FP IG   I +L T +LL   +++   G  DVA R+Q+ +++IMR A +   I  NP
Sbjct  128  LYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNP  187

Query  194  ALDLAGSIQAPRTVHRPALSLNRLPELLDRIDNYTGRELTRLAVLLTLHVFVRSSELRFA  253
            A D+AG++ + ++ H PAL+ +R+PE+L R+  Y GR +TR+AV L+L  FVRSSELRFA
Sbjct  188  ASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFA  247

Query  254  RWDEFDLQRAMWEIPDTRKPIEGVRYSTRGTKMSGDIQIVPLSPQVIEILERLRSLNRFS  313
            RWDEFD+++++W +P  R  I GVRYS RG KM  + +IVPLS Q + +LE+L+ ++   
Sbjct  248  RWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEE-HIVPLSRQAMVLLEQLKQISGDK  306

Query  314  ELVLPGDHRYWKPLSENTVNQVLRNMGYDTTKDVCGHGFRTMACSALLESGLWTDAAIER  373
            EL++PGDH   K +SENTVN  LR MGYDT  +VCGHGFRTMA +AL ESGLW+D AIER
Sbjct  307  ELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIER  366

Query  374  QMSHQERNRVRAAYIHKAQFLEQRRLIMAWWSNYIDANRSGRITPHEFAH  423
            Q+SH ERN VRAAYIH ++ L++RRL++ WW++Y+D  +  +ITP E+A+
Sbjct  367  QLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

270) Rahaq2_2650 in NC_016818


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  341 bits (1281),  Expect = 5e-95, Method: Compositional matrix adjust.
 Identities = 209/417 (51%), Positives = 299/417 (72%), Gaps = 3/417 (0%)

Query  1    MSLNDSKIRNLKPSPKPFKVSDSHGLYLLVNPGGSRLWYLKYR--INRKESRLGLGAYPD  58
            M LN  ++   KP  K +K++D+ GLYL V++ GS+ W +KYR   ++KE RL++G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQQRDGIRKLLAQNINPAQQRSAERTPSTPEKTFKHVALEWHNSNRTWSENHAS  118
            V+LA+AR +RD  +KLL Q I+P  ++   ++ ++   TF  +A EWH SN+ WSE+H S
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASMDNHIFPVIGHLPVAELKPRHFIDLLKSIEKKGLLEVAARTRQHMYNIMRHAVHQ  178
            R+L  ++  IFP IG   + +LK  H++  +K ++  G  +VA R +Q++  IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  ELTEHNPAANLDGIIAPPIKRHYPAlplerlpellirirDYQQGREltrlavlltlhlFI  238
            +  + NPA+++ G ++    RHYPALP  R+PE+L R+  Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFKNRIWTIPATRDSIPGVRYSGRGAKMRTPHIVPLSRQAITILKQI  298
            RSSELRFARW E+DF + +W +PA R+ I GVRYS RG KM+  HIVPLSRQA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  WEISGHQELIFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLW  358
             +ISG++EL+FPGDH++ K M ENTVN ALR MGYDTK E+CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AQDAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDMCRKAYAPPYICGK  415
            ++DA+ERQ+SH ERN+VRAAYIH +E LD R+ M+QWW+DYLD+ +     PY  ++
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

271) SbBS512_E0979 in NC_010658


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  340 bits (1276),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 203/415 (49%), Positives = 296/415 (72%), Gaps = 3/415 (0%)

Query  3    LNDSKIRKLKPSSRPVKLSDAHGLYLLVNPGGSRIWYLKYR--FNGKESRVSLGAYPLVS  60
            LN  ++   KP  +  K++D+ GLYL V++ GS+ W +KYR   + KE R+++G  P V+
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  61   LAEARQQRDGIRKLLAQNINPAQQRMAEKSACSPEKCFKAVALAWHKTNKKWSADYAARI  120
            LA+AR +RD  +KLL Q I+P  ++   ++  S    F ++A  WH +NK+WS D  +R+
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRV  122

Query  121  LASMENHIFPAVGHLPVAALKTQDFTALLRVIENKGFLEVASRTRQQLSNIMRYAVQQGL  180
            L  +E  IFP +G   +  LKT ++ A ++ ++  G  +VA R +Q+++ IMRYAVQ++ 
Sbjct  123  LRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDY  182

Query  181  TDSNPAQHLEGVTASPVKNHYPAlplerlpelldrIGDYRQGRELTRLAVVLTLHLFIRS  240
             DSNPA ++ G  ++    HYPALP  R+PE+L R++ YR GR +TR+AV L+L  F+RS
Sbjct  183  IDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFVRS  241

Query  241  SELRFARWSEIDFRHKIWTIPATREAIDKVRFSGRGAKIRTPHIVPLSCQAIAILKQIQE  300
            SELRFARW E+DF   +W +PA RE I  VR+S RG K++  HIVPLS QA+ +L Q+++
Sbjct  242  SELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQ  301

Query  301  LSGHLDLVFPGDHNPYKPMSENTTNRALRLMGYDTKTEICGHGLRAMACSALVESDLWSR  360
            +SG+ +L+FPGDH++ K MSENT N ALR MGYDTKTE+CGHG+R+MA +AL ES+LWS 
Sbjct  302  ISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSD  361

Query  361  DTVERQMSHQERNSVRAAYVHKAEHLEARKAMMQWWSDYLDVCREGYVAPYIYAR  415
            D++ERQ+SH ERN+VRAAY+H +EHL+ R+ M+QWW+DYLD+ +   ++PY YAR
Sbjct  362  DAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

272) int in NC_011748


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  340 bits (1275),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 198/415 (48%), Positives = 294/415 (71%), Gaps = 3/415 (0%)

Query  3    LTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYQAIS  60
            L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G   +++
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNLALAWHKSNRKWSQNTADRL  120
            L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   R+
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRV  122

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV+++ 
Sbjct  123  LRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDY  182

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+RS
Sbjct  183  IDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFVRS  241

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+K+
Sbjct  242  SELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQ  301

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
            I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW+ 
Sbjct  302  ISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSD  361

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  362  DAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

273) O3M_09700 in NC_018650


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  340 bits (1275),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 198/415 (48%), Positives = 294/415 (71%), Gaps = 3/415 (0%)

Query  3    LTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYQAIS  60
            L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G   +++
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNLALAWHKSNRKWSQNTADRL  120
            L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   R+
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRV  122

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV+++ 
Sbjct  123  LRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDY  182

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+RS
Sbjct  183  IDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFVRS  241

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+K+
Sbjct  242  SELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQ  301

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
            I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW+ 
Sbjct  302  ISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSD  361

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  362  DAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

274) O3O_15890 in NC_018661


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  340 bits (1275),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 198/415 (48%), Positives = 294/415 (71%), Gaps = 3/415 (0%)

Query  3    LTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYQAIS  60
            L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G   +++
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNLALAWHKSNRKWSQNTADRL  120
            L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   R+
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRV  122

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV+++ 
Sbjct  123  LRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDY  182

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+RS
Sbjct  183  IDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFVRS  241

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+K+
Sbjct  242  SELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQ  301

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
            I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW+ 
Sbjct  302  ISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSD  361

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  362  DAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

275) O3K_09735 in NC_018658


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  340 bits (1275),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 198/415 (48%), Positives = 294/415 (71%), Gaps = 3/415 (0%)

Query  3    LTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISG--KESRIALGAYQAIS  60
            L   ++ T KP DK +K++D+ GLYL V + GS+ W +KYR ++  KE R+A+G   +++
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNLALAWHKSNRKWSQNTADRL  120
            L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SN++WS++   R+
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRV  122

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L  L+  IFP IG+  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV+++ 
Sbjct  123  LRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDY  182

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+RS
Sbjct  183  IDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFVRS  241

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+K+
Sbjct  242  SELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQ  301

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
            I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW+ 
Sbjct  302  ISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSD  361

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  362  DAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

276) ECABU_c49370 in NC_017631


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  339 bits (1273),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 198/359 (56%), Positives = 270/359 (76%), Gaps = 3/359 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGG--KQHLMAFGVYPD  58
            M L   +V +AKP +K Y + DG+G+ L V + GSKYWR ++R  +  K++ +AFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARKKREEARKLVTAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHA  118
            V+LA+AR KR+EA+KL+  GIDP+ +++  + E++    TFE +AREW  +N++WSEDH 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  119  NRVKKSLEDNIFPTIGARNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  178
            +RV + LE  IFP IG+ +I +L T +LL PIK V+ SG+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLQKIDDYTGRPLTRWATELTLLIFI  238
            ++ ID NPA +MAGA+++++ +H PAL   R+PE+L ++  Y GR +TR A EL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPLSKQALAILKQI  298
            RSSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VPLS+QA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL  357
            KQ+ G+ EL+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGL
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGL  358

277) W5S_1679 in NC_017845


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  338 bits (1270),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 204/424 (49%), Positives = 304/424 (72%), Gaps = 10/424 (2%)

Query  1    MSLTDTKVKKAKPLEKEYKLTDGFGMHLLIHPNGSKYWRLSYR--FAQKQKLLALGVYPA  58
            M L   +V  AKP +K YK++DG G+ L + ++GSKYWR+ YR    +K+  LA+GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLTDARERRDEARKLIANGIDPGARKKSGREQQGTHDESRSFAVMARAWAETKTKWSED  118
            ++L++AR +RDEA+KL+ +GIDP   K   +E Q+ +  + +F  +AR W  ++ +WSED
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDP---KTEQKEAQAENSGAYTFETIAREWHASNKRWSED  117

Query  119  YKVKVWRRIENYLLPDLGNRDVSELDTSDLLIPLRKVEKLGYLDIAMRLKQYTTSIMRYA  178
             + +V R +E Y++P++G+ D+ +L TS+LL P++KV+  G  D+A RL+Q  T+IMRYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VQQKIISYNPAYDLQGTIEKGETAHRPSIEIYEIPDLLQKLDNYRGRGlltelairltll  238
            VQ+  I  NPA D+ G++    + H P++    +P++L +L  YRGR ++T +A+ L+LL
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGR-VMTRIAVELSLL  236

Query  239  VFVRSSELRFARWSEIDFKKSLWVIPEQRKEVKGVKHSGRGAKMKRKHFVPLCRQAVEIL  298
             FVRSSELRFARW E+DF KSLW +P +R E+KGV+ S RG KMK  H+VPL RQA+ +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  299  KEVKQITYGEKAGDGFIFTGFYDSDSAMSSGTINKALQRMGYDTKTDLCGHGFRTLACSA  358
             ++KQI+ G+K    ++F G  D+   MS  T+N AL+ MGYDTKT++CGHGFRT+A +A
Sbjct  297  EQLKQIS-GDKE---LLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGA  352

Query  359  LTESGLWSEDTVELQMSHKEKNTVRSAYTHKVSHLDQRKLMLQWWADFLDANRNGVVSPF  418
            L ESGLWS+D++E Q+SH E+N VR+AY H   HLD+R+LM+QWWAD+LD  +   ++P+
Sbjct  353  LGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

Query  419  EFAQ  422
            E+A+
Sbjct  413  EYAR  416

278) Rahaq2_1748 in NC_016818


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  338 bits (1269),  Expect = 4e-94, Method: Compositional matrix adjust.
 Identities = 210/423 (50%), Positives = 302/423 (72%), Gaps = 5/423 (1%)

Query  1    MSLNDSKIRNLKPSEKPFKISDSHGLYLLVNPGGSRLWYLKYR--IDGKESRLGLGAYPD  58
            M LN  ++   KP +K +K++D+ GLYL V++ GS+ W +KYR   D KE RL++G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQQRDGIRKLLAQNINPAQQRSAERATSSPEKTFKYVALDWHKSNRTWSENHAS  118
            V+LA+AR +RD  +KLL Q I+P  ++   +A +S   TF  +A +WH SN+ WSE+H S
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASMNNHIFPVIGHLPVAELKPRHFIDLLKGIEQKGLLEVAARTRQHMCNIMRHAIHQ  178
            R+L  ++  IFP IG   + +LK  H++  +K ++  G  +VA R +Q++  IMR A+++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  DLIKNNPAANLEGIIAPPVKRHYpalplerlpellarIEDYQQGREltrlavlltlhlFI  238
            D I +NPA+++ G ++    RHYPALP  R+PE+LAR+  Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFACWSEIDFKNRIWTIPATREAIPGVRYSERGAKMRTPHIVPLSRQSIAILKQI  298
            RSSELRFA W E+DF + +W +PA RE I GVRYS RG KM+  HIVPLSRQ++ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  REISGHRVLIFPGDHNPYKPMCENTVNKALRLMRYDTKNEICGHGLRAMACSALMESGLW  358
            ++ISG++ L+FPGDH++ K M ENTVN ALR M YDTK E+CGHG+R+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  AQDAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDMCPKQYVPPYICGKEIS  418
            ++DA+ERQ+SH ERN+VRAAYIH +E LD R+ M+QWW+DYLD+   + + PY  ++   
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR--V  417

Query  419  CTM  421
            C +
Sbjct  418  CNI  420

279) c5371 in NC_004431


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  338 bits (1267),  Expect = 5e-94, Method: Compositional matrix adjust.
 Identities = 197/359 (55%), Positives = 270/359 (76%), Gaps = 3/359 (0%)

Query  27   MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGG--KQHLMAFGVYPD  84
            M L   +V +AKP +K Y + DG+G+ L V + GSKYWR ++R  +  K++ +AFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  85   VSLADARKKREEARKLVTAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHA  144
            V+LA+AR KR+EA+KL+  GIDP+ +++  + E++    TFE +AREW  +N++WSEDH 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  145  NRVKKSLEDNIFPTIGARNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  204
            +RV + LE  IFP IG+ +I +L T +LL PIK V+ SG+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  205  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLQKIDDYTGRPLTRWATELTLLIFI  264
            ++ ID NPA +MAGA+++++ +H PAL   R+PE+L ++  Y GR +TR A EL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  265  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPFSKQALAILKQI  324
            RSSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VP+S+QA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  325  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL  383
            KQ+ G+ EL+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGL
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGL  358

280) i14_4891 in NC_017652


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  338 bits (1267),  Expect = 5e-94, Method: Compositional matrix adjust.
 Identities = 197/359 (55%), Positives = 270/359 (76%), Gaps = 3/359 (0%)

Query  27   MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGG--KQHLMAFGVYPD  84
            M L   +V +AKP +K Y + DG+G+ L V + GSKYWR ++R  +  K++ +AFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  85   VSLADARKKREEARKLVTAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHA  144
            V+LA+AR KR+EA+KL+  GIDP+ +++  + E++    TFE +AREW  +N++WSEDH 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  145  NRVKKSLEDNIFPTIGARNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  204
            +RV + LE  IFP IG+ +I +L T +LL PIK V+ SG+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  205  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLQKIDDYTGRPLTRWATELTLLIFI  264
            ++ ID NPA +MAGA+++++ +H PAL   R+PE+L ++  Y GR +TR A EL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  265  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPFSKQALAILKQI  324
            RSSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VP+S+QA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  325  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL  383
            KQ+ G+ EL+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGL
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGL  358

281) i02_4891 in NC_017651


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  338 bits (1267),  Expect = 5e-94, Method: Compositional matrix adjust.
 Identities = 197/359 (55%), Positives = 270/359 (76%), Gaps = 3/359 (0%)

Query  27   MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGG--KQHLMAFGVYPD  84
            M L   +V +AKP +K Y + DG+G+ L V + GSKYWR ++R  +  K++ +AFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  85   VSLADARKKREEARKLVTAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHA  144
            V+LA+AR KR+EA+KL+  GIDP+ +++  + E++    TFE +AREW  +N++WSEDH 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHASNKRWSEDHR  119

Query  145  NRVKKSLEDNIFPTIGARNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  204
            +RV + LE  IFP IG+ +I +L T +LL PIK V+ SG+ +VA RLQQR TAIMRYAVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  205  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLQKIDDYTGRPLTRWATELTLLIFI  264
            ++ ID NPA +MAGA+++++ +H PAL   R+PE+L ++  Y GR +TR A EL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  265  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPFSKQALAILKQI  324
            RSSELRFARW E+DF+ S+W +P+ RE I GV+ S RG KM+  H+VP+S+QA+ +L Q+
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  325  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL  383
            KQ+ G+ EL+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA ++L ESGL
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGL  358

282) intB in NC_021505


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  337 bits (1264),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 206/418 (50%), Positives = 292/418 (70%), Gaps = 6/418 (1%)

Query  8    LTDTACRTAKPREREYKLFDGDGLYLLVQPNGRKGWRLRYVKP-DGREGLTALGSYPVVG  66
            L      TAKP+++ YK+ DG+GLYL V ++G K WR++Y +P D +E+  A+G  P V 
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  67   LGDARRKRFEIKQQLANGIDPIQYKQQTKTQAVINGR-TFESVALDWYASMVPKWAPGHA  125
            L++AR KR E K+ L +GIDP    +Q  +QA  +G  TFE++A +W AS   +W+ +H 
Sbjct  63   LAQARAKRDEAKKLLVQGIDPK--TEQKEAQAENSGAYTFETIAREWHAS-NKRWSEDHR  119

Query  126  KTVLSRLKTHVFPLIGARAIVELDTHDLMQPLEAVTKRGTIDVALRIKNYLQSIMREAKR  185
              VL  L   +FP IG+  I +L T +L+ P+  V   G  DVA R+++ + +IMR A +
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  186  LRLITANPAHDLDGSIKTPRVTHRPALPLSRLPGLLACIEDYRGRPLTRLTVMLSLHVFV  245
               I +NPA D+ G++ T +  H PALP SR+P +LA +  YRGR +TR++V LSL  FV
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  246  RSSELRFARWNEFDLKRGIWEIPDTRPALDGVPFSTRGTKMAGDIHVVPLSPQAVALLEQ  305
            RSSELRFARW+EFD+ +++W +P  R  + GV +S RG KM  + H+VPLS QA+ LLEQ
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEE-HIVPLSRQAMVLLEQ  298

Query  306  IHAITGKFELVFAGDAKPWKPMSENTVNAALRTMGYDTKVDICGHGFRAMACSALVESGL  365
            +  I+G  EL+F+GD  + K MSENTVN+ALR+MGYDTK ++CGHGFR+MA +AL ESGL
Sbjct  299  LKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGL  358

Query  366  WSETAIERQMSHKERNNVRAAYTHKAEFLEERRMIMTWWSRFLEANREDHVTPHEFAK  423
            WS+ AIERQ+SH ERNNVRAAY H +E L+ERR+++ WW+ +L+  + +H+TP E+A+
Sbjct  359  WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

283) PputW619_4935 in NC_010501


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  337 bits (1264),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 201/417 (49%), Positives = 294/417 (71%), Gaps = 4/417 (0%)

Query  8    LTDNACRTAKAREREYKLFDGDGLYLLVKPNGRKGWRLRYVKP-DGREGLTSLGNYPVVG  66
            L      TAK++++ YK+ DG+GLYL V ++G K WR++Y +P D +E+  ++G  P V 
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  67   LADARHKRFELKQQLANGIDPIQSKQQAKVQAVINGRTFESVALDWYAGMVPKWAPGHAK  126
            LA+AR KR E K+ L +GIDP   +++A+ +    + TFE++A +W A+   +W+ +H  
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHAS-NKRWSEDHRS  120

Query  127  TVLSRLKTHVFPLLGARAIVELDTHDLMQPLEAVTKRGTIDVALRIKNYLQSIMREAKRL  186
             VL  L   +FP +G+  I +L T +L+ P+  V   G  DVA R+++ + +IMR A + 
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  187  RLITANPAHDLDGSIKTPRVTHRPALPLSRLPELQARIDGYKGRPLTRLTVMLSLHVFVR  246
              I +NPA D+ G++ T +  H PALP SR+PE+ AR+ +Y+GR +TR++V LSL  FVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  247  SSELRFARWNEFDLKRGIWEIPDTRPALDGVPFSTRGTKMAGDIHVVPLSPQAVALLEQI  306
            SSELRFARW+EFD+ +++W +P  R  + GV +S RG KM  + H+VPLS QA+ LLEQ+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEE-HIVPLSRQAMVLLEQL  299

Query  307  HAITGKFELVFAGDAKPWKPMSENTVNAALRTMGYDTKVDICGHGFRAMACSALVESGLW  366
              I+G  EL+F+GD  + K MSENTVN+ALR+MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  367  SETAIERQMSHKERNNVRAAYTHKAEFLEERRMIMTWWSRFLEANREDHVTPHEFAR  423
            S+ AIERQ+SH ERNNVRAAY H +E L+ERR+++ WW+ +L+  + +H+TP E+AR
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

284) LHK_01737 in NC_012559


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  337 bits (1266),  Expect = 8e-94, Method: Compositional matrix adjust.
 Identities = 210/436 (49%), Positives = 304/436 (70%), Gaps = 26/436 (5%)

Query  7    LTQLAIKNLKPQDKPYKKSDGGGLYLLINPNGSKYWRMNYR--INGKQKTLAIGVYCQFA  64
            L    +   KP+DK YK +DGGGLYL ++++GSKYWRM+YR   + K+  LA+GV     
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWP---  59

Query  65   LVDDKGKARAEQVIMSLADARLHCDAARAMLAKGIDPFETKQEAKKAANGLSPGSFAY--  122
                          ++LA+AR   D A+ +L +GIDP    +  +K A++ ++G++++  
Sbjct  60   -------------TVTLAQARAKRDEAKKLLVQGIDP----KTEQKEAQAENSGAYTFET  102

Query  123  VAREWHAKMANKWVPSHAANVLGRLERYIFPDIGHMPFAEIRTKHMLMALRKVEAKNILD  182
            +AREWHA   ++W   H + VL  LE YIFP+IG   + +++T H+L +++KV+A    D
Sbjct  103  IAREWHAS-NKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHD  161

Query  183  VTSRLRQYLKQIGRYAVQTGRIDFNPGNDLDGALQTRRTVHRPALSLNRLPELLERIDAA  242
            V+ RL+Q +  I RYAVQ + ID NP++D+ GAL T ++ H PAL+ +R+PE+L R+ A 
Sbjct  162  VAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAY  221

Query  243  KLRPLTRAAISLTLLTFVRSSELRFARWEEIDFDRAVWLIPGEREALPGVKFSSRGAKMR  302
            + R +TR A+ L+LLTFVRSSELRFARW+E+DFD+++W +P+ RE + GV++S RG KM+
Sbjct  222  RGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMK  281

Query  303  TPHLVPLCQQALALFREVHAITGRFELVFAGDHDPYKPMSESTVNIALKRMGYDTKTEVC  362
              H+VPL +QA+ L+ ++  I+G  EL+F+GDHD+ K MSE+TVN AL+ MGYDTKTEVC
Sbjct  282  EEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVC  341

Query  363  GHGFRAMACSALSESGQFSIEAIERQMSHQERDSVRAAYTHKAEFLTERRDMMGWWADFL  422
            GHGFR+MA +AL+ESG  S +AIERQ+SH ER++VRAAY H +E L ERR M+ WWAD+L
Sbjct  342  GHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYL  401

Query  423  DAQREGTYIEPLEFKR  438
            D   +   I P E+ R
Sbjct  402  DII-QYEHITPYEYAR  416

285) SBOV45841 in NC_022241


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  335 bits (1259),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 203/361 (57%), Positives = 271/361 (76%), Gaps = 3/361 (0%)

Query  1    MALTDRAIVHAKPCGKPYKLSDSHGLYLLVNPNGSKRWYIKYR--FVNKEKKLALGPYPL  58
            M L  R +  AKP +K YK++D+ GLYL V+++GSK W +KYR    +KE +LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   LTLAQARRMREEAQLLLISGIDPSAHRKAERLAITPEHTFESVAREWVISNVNWSAEHKK  118
            +TLAQAR  R+EA+ LL+ GIDP +++K  +   +   TFE++AREW  SN  WS +H+ 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLRYFELYVFPTNGSCDITKMKVKDLLVPIKEVEKAGKLDVASRLQQRTACVMRYAVQN  178
            RVLRY+ELY+FP  GS DI ++K  +LL PIK V+ +GK DVA RLQQR + +MRYAVQN
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIDHNPASDLTGAVSTPKVRHHPALDLNLIPDFLDRIDDYKGRqltqlavklalllFIR  238
            + ID NPASD++GA+ST K RH PAL  + +P+FL R+  Y+GR +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRFARWDEIDLRNAMWTIPAEREPIPGVKYSARGAKMHSPHLVPLSRQAIELLHEVR  298
            SSELRFARWDE+D+ +++W +PA RE I GV+YS RG KM   H+VPLSRQA+ LL++++
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  QHCRPGTELVFPGDHNYRKPMSENTINKALRVMGYDTQKDVCGHGFRTMACSALVESGLW  358
            Q    + EL+FPGDH+  K MSENT+N ALR MGYDT+ +VCGHGFRTMA +AL ESGLW
Sbjct  301  QIS-GDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  S  359
            S
Sbjct  360  S  360

286) Pfl01_3064 in NC_007492


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  334 bits (1252),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 202/408 (50%), Positives = 294/408 (73%), Gaps = 4/408 (0%)

Query  16   ARPTDRPYKLFDGDGLYLLIQPNGRKGWRLRYVKP-DGREGLTSLGSYPVIGLAEARQKR  74
            A+P D+ YK+ DG+GLYL + ++G K WR++Y +P D +E+  ++G  P + LA+AR KR
Sbjct  11   AKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKR  70

Query  75   LDAKRMLADGIDPVESKRKAKTEDAVNGRTFESVALDWHKNMSARWTLDHSKNVFNRLNN  134
             +AK++L +GIDP   ++ A++E++  + TFE++A +WH + + RW+ DH   V+  L+ 
Sbjct  71   DEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHAS-NKRWSEDHRSRVLRYLEL  128

Query  135  YVFPFIGARAIADLDTYDLMQPLEAIRKRGTIDVALRVQRYLQSIMREAKRLRLIPMNPA  194
            Y+FP IG+  I +L T +L+ P+  +   G  DVA R+Q+ + +IMR A +   I  NPA
Sbjct  129  YIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPA  188

Query  195  YDLQGLIKAPRVSHRPTLPLSRLPELLARIYAYKGRELTRLTLMLSLHVFVRSSELRFAR  254
             D+ G + + +  H P+LP SR+PE+LAR+ AY+GR +TR+++ LSL  FVRSSELRFAR
Sbjct  189  SDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFAR  248

Query  255  WCEFDLKRCVWEIPDTRPELEDVRHSTRGTKMAGDVHLVPLSPQVVAVLEQIHTLTGAFD  314
            W EFD+ + +W +P  R E+ +VR S RG KM  + H+VPLS Q + +LEQ+  ++G  +
Sbjct  249  WDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEE-HIVPLSRQAMVLLEQLKQISGDKE  307

Query  315  LVFAGDARAWKPMSENTVNKALRTMGYDTKTEICGHGFRSMACSALIESGLWSETAIERQ  374
            L+F+GD  A K MSENTVN ALR+MGYDTKTE+CGHGFR+MA +AL ESGLWS+ AIERQ
Sbjct  308  LLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQ  367

Query  375  MSHRERNSVRAAYIHKAEFIEERRLIMNWWSRYLAANLQEHVTPHEFA  422
            +SH ERN+VRAAYIH +E ++ERRL+++WW+ YL     EH+TP E+A
Sbjct  368  LSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYA  415

287) Pecwa_1727 in NC_013421


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  333 bits (1251),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 206/425 (49%), Positives = 309/425 (73%), Gaps = 11/425 (2%)

Query  1    MSLTDTKVKKAKPLEKEYKLTDGFGMHLLVHPNGSKYWRLSYR--FAQKQKLLALGVYPA  58
            M L   +V  AKP +K YK++DG G+ L V ++GSKYWR+ YR    +K+  LA+GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLTDARERRDEARKLIANGIDPGAKKKASIREQPGAQDESRSFAVMARAWAETKTKCSE  118
            ++L++AR +RDEA+KL+ +GIDP + +K +  E++GA     +F  +AR W  ++ + SE
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY----TFETIAREWHASNKRWSE  116

Query  119  DYKVKVWRRIENYLLPDLGKRDVSELDTSDLLTPLRKVEKLGYLDIAMRLKQYTTSIMRY  178
            D + +V R +E Y++P++G  D+ +L TS+LL+P++KV+  G  D+A RL+Q  T+IMRY
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  179  AVQQKIISYNPAYDLAGTVEKGETAHRPSIEIYEIPDLLQKIDDYHGRGlltelairltl  238
            AVQ+  I  NPA D+AG++    + H P++    +P++L ++  Y+GR ++T +A+ L+L
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGR-VMTRIAVELSL  235

Query  239  lVFVRSSELRFARWNEIDFKKSLWVIPEQRKEVKGVKYSGRGAKMKRKHFVPLSRQAVEI  298
            L FVRSSELRFARW+E+DF KSLW +P +R E+KGV+YS RG KMK  H+VPLSRQA+ +
Sbjct  236  LTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVL  295

Query  299  LKEVKQITYGEKAGDGFIFTGFYDSDSAMSSGTINKALQRMGYDTKTDLCGHGFRTLACS  358
            L ++KQI+ G+K    ++F G  D+   MS  T+N AL+ MGYDTKT++CGHGFRT+A +
Sbjct  296  LEQLKQIS-GDKE---LLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARG  351

Query  359  ALTESGLWSEDTVELQMSHKEKNTVRSAYTHKVSHLDQRKLMLQWWADFLDANRNGVVSP  418
            AL ESGLWS+D++E Q+SH E+N VR+AY H   HLD+R+LM+QWWAD+LD  +   ++P
Sbjct  352  ALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITP  411

Query  419  FEFAQ  423
            +E+A+
Sbjct  412  YEYAR  416

288) ECP_1962 in NC_008253


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  333 bits (1248),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 198/413 (48%), Positives = 296/413 (72%), Gaps = 3/413 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYR--INGKESRIALGAYPA  58
            M LN  ++ + KP DK +K++D+ GLYL V + GS+ W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTAD  118
            V+L++AR +R+  +K+L   I+P  ++   ++       F ++A EWH+S+K+WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQ  178
            RVL  L+  +FP IG   + +LK+ H++  +K ++  G  +VA R +Q+++ IMRYAV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFI  238
            + I+ NPA+++ G  ++   RHYP+LP  R+PE+L R+ +Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRI  298
            RSSELR+ARW E++F + +W +PA RE I GVRYS RG KM+  HIVPLS Q + +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KEISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLW  358
            K+ISG+ EL+FPG HD+ K MSENT+N ALR MGY+TK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SQDAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            S+DA+ERQ+SH ERN VR AYIH +EH++ R  M+QWW+DYLD+     + PY
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

289) ECABU_c22620 in NC_017631


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  333 bits (1248),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 198/413 (48%), Positives = 296/413 (72%), Gaps = 3/413 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYR--INGKESRIALGAYPA  58
            M LN  ++ + KP DK +K++D+ GLYL V + GS+ W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTAD  118
            V+L++AR +R+  +K+L   I+P  ++   ++       F ++A EWH+S+K+WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQ  178
            RVL  L+  +FP IG   + +LK+ H++  +K ++  G  +VA R +Q+++ IMRYAV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFI  238
            + I+ NPA+++ G  ++   RHYP+LP  R+PE+L R+ +Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRI  298
            RSSELR+ARW E++F + +W +PA RE I GVRYS RG KM+  HIVPLS Q + +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KEISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLW  358
            K+ISG+ EL+FPG HD+ K MSENT+N ALR MGY+TK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SQDAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            S+DA+ERQ+SH ERN VR AYIH +EH++ R  M+QWW+DYLD+     + PY
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

290) c2449 in NC_004431


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  333 bits (1248),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 198/413 (48%), Positives = 296/413 (72%), Gaps = 3/413 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYR--INGKESRIALGAYPA  58
            M LN  ++ + KP DK +K++D+ GLYL V + GS+ W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTAD  118
            V+L++AR +R+  +K+L   I+P  ++   ++       F ++A EWH+S+K+WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQ  178
            RVL  L+  +FP IG   + +LK+ H++  +K ++  G  +VA R +Q+++ IMRYAV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFI  238
            + I+ NPA+++ G  ++   RHYP+LP  R+PE+L R+ +Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRI  298
            RSSELR+ARW E++F + +W +PA RE I GVRYS RG KM+  HIVPLS Q + +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KEISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLW  358
            K+ISG+ EL+FPG HD+ K MSENT+N ALR MGY+TK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SQDAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            S+DA+ERQ+SH ERN VR AYIH +EH++ R  M+QWW+DYLD+     + PY
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

291) i14_2259 in NC_017652


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  333 bits (1248),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 198/413 (48%), Positives = 296/413 (72%), Gaps = 3/413 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYR--INGKESRIALGAYPA  58
            M LN  ++ + KP DK +K++D+ GLYL V + GS+ W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTAD  118
            V+L++AR +R+  +K+L   I+P  ++   ++       F ++A EWH+S+K+WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQ  178
            RVL  L+  +FP IG   + +LK+ H++  +K ++  G  +VA R +Q+++ IMRYAV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFI  238
            + I+ NPA+++ G  ++   RHYP+LP  R+PE+L R+ +Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRI  298
            RSSELR+ARW E++F + +W +PA RE I GVRYS RG KM+  HIVPLS Q + +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KEISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLW  358
            K+ISG+ EL+FPG HD+ K MSENT+N ALR MGY+TK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SQDAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            S+DA+ERQ+SH ERN VR AYIH +EH++ R  M+QWW+DYLD+     + PY
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

292) i02_2259 in NC_017651


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  333 bits (1248),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 198/413 (48%), Positives = 296/413 (72%), Gaps = 3/413 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYR--INGKESRIALGAYPA  58
            M LN  ++ + KP DK +K++D+ GLYL V + GS+ W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTAD  118
            V+L++AR +R+  +K+L   I+P  ++   ++       F ++A EWH+S+K+WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQ  178
            RVL  L+  +FP IG   + +LK+ H++  +K ++  G  +VA R +Q+++ IMRYAV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFI  238
            + I+ NPA+++ G  ++   RHYP+LP  R+PE+L R+ +Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRI  298
            RSSELR+ARW E++F + +W +PA RE I GVRYS RG KM+  HIVPLS Q + +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KEISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLW  358
            K+ISG+ EL+FPG HD+ K MSENT+N ALR MGY+TK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SQDAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            S+DA+ERQ+SH ERN VR AYIH +EH++ R  M+QWW+DYLD+     + PY
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

293) ECOK1_2168 in NC_017628


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  333 bits (1248),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 198/413 (48%), Positives = 296/413 (72%), Gaps = 3/413 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYR--INGKESRIALGAYPA  58
            M LN  ++ + KP DK +K++D+ GLYL V + GS+ W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTAD  118
            V+L++AR +R+  +K+L   I+P  ++   ++       F ++A EWH+S+K+WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQ  178
            RVL  L+  +FP IG   + +LK+ H++  +K ++  G  +VA R +Q+++ IMRYAV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFI  238
            + I+ NPA+++ G  ++   RHYP+LP  R+PE+L R+ +Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRI  298
            RSSELR+ARW E++F + +W +PA RE I GVRYS RG KM+  HIVPLS Q + +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KEISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLW  358
            K+ISG+ EL+FPG HD+ K MSENT+N ALR MGY+TK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SQDAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            S+DA+ERQ+SH ERN VR AYIH +EH++ R  M+QWW+DYLD+     + PY
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

294) intA_3 in NC_022370


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  333 bits (1248),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 198/413 (48%), Positives = 296/413 (72%), Gaps = 3/413 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYR--INGKESRIALGAYPA  58
            M LN  ++ + KP DK +K++D+ GLYL V + GS+ W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTAD  118
            V+L++AR +R+  +K+L   I+P  ++   ++       F ++A EWH+S+K+WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQ  178
            RVL  L+  +FP IG   + +LK+ H++  +K ++  G  +VA R +Q+++ IMRYAV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFI  238
            + I+ NPA+++ G  ++   RHYP+LP  R+PE+L R+ +Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRI  298
            RSSELR+ARW E++F + +W +PA RE I GVRYS RG KM+  HIVPLS Q + +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KEISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLW  358
            K+ISG+ EL+FPG HD+ K MSENT+N ALR MGY+TK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SQDAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            S+DA+ERQ+SH ERN VR AYIH +EH++ R  M+QWW+DYLD+     + PY
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

295) UM146_07190 in NC_017632


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  333 bits (1248),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 198/413 (48%), Positives = 296/413 (72%), Gaps = 3/413 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYR--INGKESRIALGAYPA  58
            M LN  ++ + KP DK +K++D+ GLYL V + GS+ W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTAD  118
            V+L++AR +R+  +K+L   I+P  ++   ++       F ++A EWH+S+K+WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQ  178
            RVL  L+  +FP IG   + +LK+ H++  +K ++  G  +VA R +Q+++ IMRYAV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFI  238
            + I+ NPA+++ G  ++   RHYP+LP  R+PE+L R+ +Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRI  298
            RSSELR+ARW E++F + +W +PA RE I GVRYS RG KM+  HIVPLS Q + +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KEISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLW  358
            K+ISG+ EL+FPG HD+ K MSENT+N ALR MGY+TK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SQDAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            S+DA+ERQ+SH ERN VR AYIH +EH++ R  M+QWW+DYLD+     + PY
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

296) UTI89_C2204 in NC_007946


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  333 bits (1248),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 198/413 (48%), Positives = 296/413 (72%), Gaps = 3/413 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYR--INGKESRIALGAYPA  58
            M LN  ++ + KP DK +K++D+ GLYL V + GS+ W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTAD  118
            V+L++AR +R+  +K+L   I+P  ++   ++       F ++A EWH+S+K+WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RVLARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQ  178
            RVL  L+  +FP IG   + +LK+ H++  +K ++  G  +VA R +Q+++ IMRYAV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFI  238
            + I+ NPA+++ G  ++   RHYP+LP  R+PE+L R+ +Y+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRI  298
            RSSELR+ARW E++F + +W +PA RE I GVRYS RG KM+  HIVPLS Q + +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KEISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLW  358
            K+ISG+ EL+FPG HD+ K MSENT+N ALR MGY+TK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SQDAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            S+DA+ERQ+SH ERN VR AYIH +EH++ R  M+QWW+DYLD+     + PY
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

297) L483_01150 in NC_021491


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  333 bits (1248),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 197/417 (48%), Positives = 293/417 (71%), Gaps = 4/417 (0%)

Query  8    LTDNACRTAKAREREYKLFDGDGLYLLVKPNGRKGWRVRYLKP-DGREGLTSLGNYPVVG  66
            L      TAK++++ YK+ DG+GLYL V ++G K WR++Y +P D +E+  ++G  P V 
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  67   LADARQKRFELKQQLANGIDPIQSKQQAKVQAVINGRTFESVALDWYAGMVPKWAPGHAK  126
            LA+AR KR E K+ L +GIDP   +++A+ +    + TFE++A +W A+   +W+ +H  
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHAS-NKRWSEDHRS  120

Query  127  TVLSRLKTHVFPLLGARAIVELDTHDLMQPLEAVTKRGTIDVALRIKNYLQSIMREAKRL  186
             VL  L   +FP +G+  I +L T +L+ P+  V   G  DVA R+++ + +IMR A + 
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  187  RLITTNPAHDLDGSIRAPRVTHRPALPLSRLPELQARIDVYKGRPLTRLTVMLSLHVFVR  246
              I +NPA D+ G++ + +  H PALP SR+PE+ AR+  Y+GR +TR++V LSL  FVR
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  247  SSELRFARWNEFDLNRGIWEIPDTRPALDGVPFSTRGTKMAGDIHVVPLSPQAVGLLEQI  306
            SSELRFARW+EFD+++++W +P  R  + GV +S RG KM  + H+VPLS QA+ LLEQ+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEE-HIVPLSRQAMVLLEQL  299

Query  307  HAITGKFDLVFAGDAKPWKPMSENTVNAALRTMGYDTKVDICGHGFRAMACSALVESGLW  366
              I+G  +L+F+GD  + K MSENTVN+ALR+MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  367  LETAIERQMSHKERNNVRAAYTHKAEFLEERRMIMTWWSRFLEANREDHVTPHEFAK  423
             + AIERQ+SH ERNNVRAAY H +E L+ERR+++ WW+ +L+  + +H+TP E+A+
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

298) KPK_1799 in NC_011283


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  326 bits (1223),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 205/417 (50%), Positives = 295/417 (71%), Gaps = 3/417 (0%)

Query  1    MSLNDSKIRKLKPSAKPFKISDSHGLYLLIKPGGSRHWYLKYR--INGKESRIALGAYPA  58
            M LN  ++   KP  K +K++D+ GLYL + + GS+ W +KYR   + KE R+A+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARHQREGIRKMLALNINPAQQRAVERGAYTPEKVFKIVALAWHKSNKKWSQNTAD  118
            ++L++AR +R+  +K+L   I+P  ++   ++  +    F  +A  WH SNK+WS++   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  RLLASLNNHVFPVIGHLSISELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQ  178
            R+L  L+  +FP IG   I +LK  H++  +K ++  G  +VA R +Q+++ IMR AV++
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GLIDSNPAANLDGVTAPPVRRHYPAlplerlpellkrIEAYHQGREltrlavlltlhlFI  238
            + IDSNPA+++ G  +    RHYPALP  R+PE+L R+ AY+ GR +TR+AV L+L  F+
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFV  239

Query  239  RSSELRFARWSEIDFRNRTWTIPATREAIAGVRYSGRGAKMRTAHIVPLSEQAIAILKRI  298
            RSSELRFARW E+DF +  W +PA RE I GVRYS RG KM+  HIVPLS QA+ +L ++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KDISGDGELVFPGDHNPYKPMCENTVNKALRLMGYDTKQDICGHGFRAMACSALMESGLW  358
            K+ISGD EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  359  SQDAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLAMNRKVFISPYLFEK  415
            S+DA+ERQ+SH ERN+VRAAYIH +E LD R+ M+QWW+DYL + +   I+PY + +
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

299) Q7S_09690 in NC_017047


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  318 bits (1194),  Expect = 3e-88, Method: Compositional matrix adjust.
 Identities = 183/362 (51%), Positives = 262/362 (73%), Gaps = 1/362 (0%)

Query  2    GAYPDVSLADARQQRDGIRKLLAQNINPAQLRSAEKATVLPGETFKAVALSWHKSNRSWS  61
            G  P V+LA+AR +RD  +KLL Q I+P   +   +A    + TF ++A  WH SN+ WS
Sbjct  56   GVWPTVTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWS  115

Query  62   DNHAARLLASMNNHIFPIIGHLPATELKTRHFIDLLKGIEQKGLLEVAARTRQHMCNIMR  121
            ++H +R+L  ++  IFP IG     +LKT H++  +K ++  G  +VA R +Q++  IMR
Sbjct  116  EDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMR  175

Query  122  HAVHQELIEHNPAANLDGIIAPPVKRHYPAlpleqlpellTRIKDYKQGRELTRLAVSLT  181
             AV+++ I+ NPA+++ G ++    RHYPALP  ++PE+L+R+  Y+ GR +TR+AV L+
Sbjct  176  YAVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELS  234

Query  182  LHLFIRSSELRFARWSEIDFKNRIWTIPATRESIPGVRYSGRGAKMRTPHIVPLSGQSIA  241
            L  F+RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ 
Sbjct  235  LLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMV  294

Query  242  ILKQIREISGHQVLVFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALM  301
            +L Q+++ISG++ L+FPGDH++ K M ENTVN ALR MGYDTK E+CGHGFR+MA +AL 
Sbjct  295  LLEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALG  354

Query  302  ESGLWAQDAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDMCRKAYVPPYIC  361
            ESGLW++DA+ERQ+SH ERN+VRAAYIH +E LD R+ M+QWW+DYLD+ +   + PY  
Sbjct  355  ESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEY  414

Query  362  GK  363
            ++
Sbjct  415  AR  416

300) BJAB0715_03144 in NC_021733


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  306 bits (1146),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 179/419 (43%), Positives = 285/419 (69%), Gaps = 5/419 (1%)

Query  21   IPLSDSKCTGAKPQEKDYSLYDGHGLILFIRKSGSKVWRFKYKRANGK-DGLMTLGNFPA  79
            + L+  +   AKP++K Y + DG GL L +   GSK WR KY+R+++K ++ +++G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  80   LSLKAARDKRRELETLLANGIDPIEYSEIQKAKLDNKYNFESIAREWHTAYKNTGRWGTE  139
            ++L  AR KR E   LL +GIDP       +A     Y FE+IAREWH++ K   RW+ +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNK---RWSED  117

Query  140  TAERALKNMEEYVFPKLGKKPIDAIKPKELIQVIKSIEDLGYTEVVKKTRQRLTSIFAFA  199
               R L+ +E Y+FP +G   I  +K  +L+  IK ++  G  +V ++ +QR+T+I  +A
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  200  MSKGFIESNPAYGLQDIFILSKKTKHHpqlplerlpelqAKLASDTGHPLTRLCVEFALH  259
            + +++I+SNPA ++ + +  + K++H P LP  R+PE+ A+LA+  G+ +TR+ VE++L 
Sbjct  178  VQNDYIDSNPASDMAGALS-TTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  260  TFARSSEIRFARWKEFDFENAIWTIPPTRDFVEGYKYSHRGAKMKAPHLIPLSNQALAII  319
            TF RSSE+RFARW EFDF++++W +P+ R+ + G +YS RG KMK  H++PLS QA+ ++
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  320  KEIFKYSGHTQNVFPKNGDPHGFMSESTINKTLRRLGYDTNIEVCGHGFRGMACAALIQS  379
             ++ + SG+ + +FP + D+   MSE+T+N +LR +GYDT+ EVCGHGFR MA +AL +S
Sbjct  297  EQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGES  356

Query  380  KLFQKDAVEKQMSHQERNNVRLAYTHKAEFLEERKTMLNWWSSYLDATKETSISPYDYT  438
             L   DA+E+Q+SH ERNNVR AY H +E L+ER+ M++WW+ YLD  +   I+PY+Y+
Sbjct  357  GLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYA  415

301) ETA_03770 in NC_010694


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  301 bits (1129),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 193/350 (56%), Positives = 268/350 (77%), Gaps = 3/350 (0%)

Query  1    MALSDVKVRSAKPEVKACKLTDGDGMVLLAHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V +AKP  K+ K++DG+G+ L   ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrdearKLLANGVDPSENKKAFKVEQEQEAITFEMVARDWQASNQKWSASHS  118
            V+LA+ARA+RDEA+KLL +G+DP  ++K  + E +  A TFE +AR+W+ASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFAAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
            +RVL+ LE  +F+ IG  +I +LKT +LL PIK V++SG+ +VA RLQQR TAIMR+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELSRIPELLHRIDHYSGRPltrlaleltllVFI  238
            ++ ID NPA ++AGA++T+K +H +AL  SR+PE+L R+  Y GR +TR+A+EL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELCFARWSEVDFETAMWTIPGEREPSEGVKHSQRGSKMRTPHLVPLSRQALGILEKI  298
            RSSEL FARW E DF+ ++W +P+ RE   GV+ S RG KM+  H+VPLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMA  348
            K +SG++EL+F GDHD+ K MSENTVN ALR MGYDTK EVCGHGFRTMA
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMA  349

302) SSON53_18230 in NC_016822


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  296 bits (1107),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 159/328 (49%), Positives = 250/328 (77%), Gaps = 2/328 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSN  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENVMNAS  326
              +G++ L+F G HD+ K +SEN +N++
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSA  328

303) SbBS512_E4662 in NC_010658


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  295 bits (1106),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 159/328 (49%), Positives = 249/328 (76%), Gaps = 2/328 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRATEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENVMNAS  326
              +G++ L+F G HD+ K +SEN +N++
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSA  328

304) SBO_4322 in NC_007613


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  295 bits (1106),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 159/328 (49%), Positives = 248/328 (76%), Gaps = 2/328 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGTGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58
            M L   ++ +AKP DK+YK++DG G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120

Query  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180

Query  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQTVTQLAVMLNLLVFIR  238
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQ  298
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+QA+ +L +L+
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  299  TWAGENGLIFTGAHDPRKPISENVMNAS  326
              +G++ L+F G HD+ K +SEN +N++
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSA  328

305) EC042_2207 in NC_017626


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  294 bits (1100),  Expect = 6e-81, Method: Compositional matrix adjust.
 Identities = 167/342 (49%), Positives = 243/342 (72%), Gaps = 1/342 (0%)

Query  1    MLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIG  60
            +L   I+P  ++   ++  +    F  +A  WH SN++WS++   R+L  L+  IFP IG
Sbjct  76   LLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIG  135

Query  61   NLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQELIDTNPAANLGGVT  120
            +  + +LK  H++   K ++  G  +VA R +Q+++ I+R AV+++ ID+NPA++++G  
Sbjct  136  SSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGAL  195

Query  121  TPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+RSSELRFARW E+DF
Sbjct  196  STTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFVRSSELRFARWDEFDF  254

Query  181  TNRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             + +W +PA RE I GV+YS RG KM+  HIVPLS Q++ +L Q+K+I+G++EL+FPGDH
Sbjct  255  DKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDH  314

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            ++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW+ DA+ERQ+SH ERN
Sbjct  315  DATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERN  374

Query  301  TVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  342
             VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  375  NVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

306) ETEC_2075 in NC_017633


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  293 bits (1099),  Expect = 8e-81, Method: Compositional matrix adjust.
 Identities = 166/342 (49%), Positives = 243/342 (72%), Gaps = 1/342 (0%)

Query  1    MLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIG  60
            +L   I+P  ++   ++  +    F  +A  WH SN++WS++   R+L  L+  IFP IG
Sbjct  76   LLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIG  135

Query  61   NLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQELIDTNPAANLGGVT  120
            +  + +LK  H++   K ++  G  +VA R +Q+++ I+R AV+++ ID+NPA++++G  
Sbjct  136  SSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGAL  195

Query  121  TPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+RSSELRFARW E+DF
Sbjct  196  STTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFVRSSELRFARWDEFDF  254

Query  181  TNRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             + +W +PA RE I GV+YS RG KM+  HIVPLS Q++ +L Q+K+I+G++EL+FPGDH
Sbjct  255  DKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDH  314

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDTVERQMSHQERN  300
            ++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW+ D++ERQ+SH ERN
Sbjct  315  DATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERN  374

Query  301  TVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  342
             VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  375  NVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

307) PSF113_0326 in NC_016830


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  292 bits (1093),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 170/343 (50%), Positives = 246/343 (72%), Gaps = 3/343 (0%)

Query  1    MLADGVDPIETKHQAKAEAVIKGRTFESVALDWHTEMSAKWAPGHSKTVMSRLKTHVFPL  60
            +L +G+DP   + +A+AE    + TFE++A +WH+  + +W+ +H   V+  L   +FP 
Sbjct  76   LLVQGIDPKTEQKEAQAENS-GAYTFETIAREWHAS-NKRWSEDHRSRVLRYLELYIFPH  133

Query  61   IGASAIVDLDTHDLMQPLEAIKKRGTIDVALRVQNYLQSIMREAKRLRLITANPAYDLEG  120
            IG+S I +L T +L+ P+  +   G  DVA R+Q+ + +IMR A +   I +NPA D+ G
Sbjct  134  IGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAG  193

Query  121  LIKAPRVVHRPALPLSRLPELQERIDTYKGRALTRLTVMLSLHVFVRSSELRFARWSEFD  180
             + + +  H PALP SR+PE+  R+ +Y+GR +TR++V LSL  FVRSSELRFARW EFD
Sbjct  194  ALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFD  253

Query  181  LKRGTWEIPDTRPALEGVPFSTRGTKMAGDIHLVPLSPQAVALLEQIHALTGKFDLVFAG  240
            + ++ W +P  R  + GV +S RG KM  + H+VPLS QA+ LLEQ+  ++G  +L+F+G
Sbjct  254  FDKSLWRVPAKREEIKGVRYSYRGMKMKEE-HIVPLSRQAMVLLEQLKQISGDKELLFPG  312

Query  241  DAKPWKPMSENTVNNALRTMGYDTKTDICGHGFRSMACSALIESGLWSETAIERQMSHKE  300
            D  + K MSENTVN+ALR+MGYDTKT++CGHGFR+MA +AL ESGLWS+ AIERQ+SH E
Sbjct  313  DHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSE  372

Query  301  RNNVRAAYIHKAEFIEERRLIMNWWSRYLEANREEHVTPHEFA  343
            RNNVRAAYIH +E ++ERRL+++WW+ YL+  + EH+TP E+A
Sbjct  373  RNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYA  415

308) ECABU_c22350 in NC_017631


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  291 bits (1089),  Expect = 5e-80, Method: Compositional matrix adjust.
 Identities = 169/342 (50%), Positives = 244/342 (72%), Gaps = 1/342 (0%)

Query  1    MLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIG  60
            +L   I+P  ++   ++  +    F  +A  WH SN++WS++   R+L  L+  IFP IG
Sbjct  76   LLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIG  135

Query  61   NLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVT  120
            +  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV+++ ID+NPA++++G  
Sbjct  136  SSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGAL  195

Query  121  TPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+RSSELRFARW E+DF
Sbjct  196  STTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFVRSSELRFARWDEFDF  254

Query  181  TNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+K+I+G++EL+FPGDH
Sbjct  255  DKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDH  314

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            ++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW+ DA+ERQ+SH ERN
Sbjct  315  DATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERN  374

Query  301  TVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  342
             VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  375  NVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

309) LF82_294 in NC_011993


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  291 bits (1089),  Expect = 5e-80, Method: Compositional matrix adjust.
 Identities = 169/342 (50%), Positives = 244/342 (72%), Gaps = 1/342 (0%)

Query  1    MLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIG  60
            +L   I+P  ++   ++  +    F  +A  WH SN++WS++   R+L  L+  IFP IG
Sbjct  76   LLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIG  135

Query  61   NLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVT  120
            +  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV+++ ID+NPA++++G  
Sbjct  136  SSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGAL  195

Query  121  TPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+RSSELRFARW E+DF
Sbjct  196  STTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFVRSSELRFARWDEFDF  254

Query  181  TNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+K+I+G++EL+FPGDH
Sbjct  255  DKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDH  314

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            ++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW+ DA+ERQ+SH ERN
Sbjct  315  DATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERN  374

Query  301  TVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  342
             VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  375  NVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

310) intB in NC_005085


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  291 bits (1089),  Expect = 6e-80, Method: Compositional matrix adjust.
 Identities = 186/407 (46%), Positives = 269/407 (67%), Gaps = 23/407 (5%)

Query  1    MPLTDTAIRNAKPREDGKPAKLADGGSLFLWVMPNGAKYWRMAYR--FDGKQKTLAFGVY  58
            M L    +  AKP++  K  K+ADGG+L+L V ++G+KYWRM YR   D K+  LAFGV 
Sbjct  1    MKLNARQVETAKPKD--KTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVW  58

Query  59   PTTSLKDAREKREAARKLLAAGTDPNAAKKEQKRERQLTVENSFEIVAREWYDKQLPRWT  118
            PT +L +AR KR+ A+KLL  G DP++ +KE + E   +   +FE +AREW   +  RW+
Sbjct  59   PTVTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASN-KRWS  115

Query  119  DDHAVRILDSLKADAFPDLGKLPVSQLTAPVILDTIRKIEKRGAVETAQRVLQRISAVIR  178
            +DH  R+L  L    FP++G   + QL ++ +L  I+K++  G  + AQR+ QR++A++R
Sbjct  116  EDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMR  175

Query  179  YAIQTGRAVHNPATDLTGAIRAKKVEHRPALPRGELREFYRRLAAEPLYIPTRIAMHLLM  238
            YA+Q +    NPA+D++GA+ + K  H PALP + + EF  RLAA    + TRIA++L +
Sbjct  176  YAVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSL  235

Query  239  LTFVRPGELRAARWEEFDEERAEWRIPAER------------MKMREPHLVPLSRQALEL  286
            LTFVR++ELR ARW+EFD +++ WR+PA R            MKM+E H+VPLSRQA+ L
Sbjct  236  LTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVL  295

Query  287  LKELRPLTGKSALLFPAVTDLKKPMSENTLGYAMGRMGY--KGTATPHGFRALASTVLNE  344
            L +L+ ++G   LLFP+  D  K MSENT+  A+  MGY  K     HGFR++A   L E
Sbjct  296  LEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGE  355

Query  345  EGF-DPDIIEKQLAHAERNKVRAAY-HRAEYLEERRKMMQWWAEFLG  389
             G+   D IE+QL+H+ERN+VRAAY H +E L+ERR M+QWWA++L+
Sbjct  356  SGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

311) ECP_1936 in NC_008253


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  287 bits (1075),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 167/342 (49%), Positives = 242/342 (71%), Gaps = 1/342 (0%)

Query  1    MLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRLRASLNNHIFPVIG  60
            +L   I+P  ++   ++  +    F  +A  WH SN++WS++   R+   L+  IFP IG
Sbjct  76   LLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIG  135

Query  61   NLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVT  120
            +  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV+++ ID+NPA++++G  
Sbjct  136  SSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGAL  195

Query  121  TPPVRRHYPApplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            +    RHYPA P  R+PE+L R++AY+ GR +TR AV L L  F+RSSELRFARW E+DF
Sbjct  196  STTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFVRSSELRFARWDEFDF  254

Query  181  TNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+K+I+G++EL+FPGDH
Sbjct  255  DKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDH  314

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            ++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW+ DA+ERQ+SH ERN
Sbjct  315  DATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERN  374

Query  301  TVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  342
             VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  375  NVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

312) c2418 in NC_004431


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  287 bits (1075),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 167/342 (49%), Positives = 242/342 (71%), Gaps = 1/342 (0%)

Query  1    MLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRLRASLNNHIFPVIG  60
            +L   I+P  ++   ++  +    F  +A  WH SN++WS++   R+   L+  IFP IG
Sbjct  76   LLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIG  135

Query  61   NLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVT  120
            +  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV+++ ID+NPA++++G  
Sbjct  136  SSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGAL  195

Query  121  TPPVRRHYPApplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            +    RHYPA P  R+PE+L R++AY+ GR +TR AV L L  F+RSSELRFARW E+DF
Sbjct  196  STTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFVRSSELRFARWDEFDF  254

Query  181  TNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+K+I+G++EL+FPGDH
Sbjct  255  DKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDH  314

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            ++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW+ DA+ERQ+SH ERN
Sbjct  315  DATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERN  374

Query  301  TVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  342
             VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  375  NVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

313) i14_2235 in NC_017652


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  287 bits (1075),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 167/342 (49%), Positives = 242/342 (71%), Gaps = 1/342 (0%)

Query  1    MLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRLRASLNNHIFPVIG  60
            +L   I+P  ++   ++  +    F  +A  WH SN++WS++   R+   L+  IFP IG
Sbjct  76   LLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIG  135

Query  61   NLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVT  120
            +  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV+++ ID+NPA++++G  
Sbjct  136  SSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGAL  195

Query  121  TPPVRRHYPApplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            +    RHYPA P  R+PE+L R++AY+ GR +TR AV L L  F+RSSELRFARW E+DF
Sbjct  196  STTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFVRSSELRFARWDEFDF  254

Query  181  TNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+K+I+G++EL+FPGDH
Sbjct  255  DKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDH  314

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            ++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW+ DA+ERQ+SH ERN
Sbjct  315  DATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERN  374

Query  301  TVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  342
             VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  375  NVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

314) i02_2235 in NC_017651


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  287 bits (1075),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 167/342 (49%), Positives = 242/342 (71%), Gaps = 1/342 (0%)

Query  1    MLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRLRASLNNHIFPVIG  60
            +L   I+P  ++   ++  +    F  +A  WH SN++WS++   R+   L+  IFP IG
Sbjct  76   LLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIG  135

Query  61   NLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVT  120
            +  + +LK  H++  +K ++  G  +VA R +Q+++ IMR AV+++ ID+NPA++++G  
Sbjct  136  SSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGAL  195

Query  121  TPPVRRHYPApplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            +    RHYPA P  R+PE+L R++AY+ GR +TR AV L L  F+RSSELRFARW E+DF
Sbjct  196  STTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFVRSSELRFARWDEFDF  254

Query  181  TNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             + +W +PA RE I GVRYS RG KM+  HIVPLS Q++ +L Q+K+I+G++EL+FPGDH
Sbjct  255  DKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDH  314

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            ++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW+ DA+ERQ+SH ERN
Sbjct  315  DATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERN  374

Query  301  TVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  342
             VR AYIH +EHL+ R+ M+QWW+DYL+  +     PY  ++
Sbjct  375  NVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

315) ECSF_1824 in NC_013654


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  286 bits (1072),  Expect = 9e-79, Method: Compositional matrix adjust.
 Identities = 163/312 (53%), Positives = 231/312 (75%), Gaps = 1/312 (0%)

Query  4    AWHKSNRKWSQNTADRLLASLNNHIFPVIGNLPVSELKPRHFIDLLKGIEEKDLLEVASR  63
             WH SN++WS++   R+L  L+  IFP IG+  + +LK  H++  +K ++  +  +VA R
Sbjct  106  EWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQR  165

Query  64   TRQHLSNIMRHAVHQELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGR  123
             +Q+++ IMR AV+++ ID+NPA++++G  +    RHYPALP  R+PE+L R++AY+ GR
Sbjct  166  LQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR-GR  224

Query  124  ELTRHAVLLMLHVFIRSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPH  183
             +TR AV L L  F+RSSELRFARW E+DF + +W +PA RE I GVRYS RG KM+  H
Sbjct  225  VMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEH  284

Query  184  IVPLSEQSIAILKQIKDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHG  243
            IVPLS Q++ +L Q+K+I+G++EL+FPGDH++ K M ENTVN ALR MGYDTK ++CGHG
Sbjct  285  IVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHG  344

Query  244  FRAMACSALMESGLWAKDAVERQMSHQERNTVRMAYIHKAEHLEARKTMMQWWSDYLEAC  303
            FR+MA +AL ESGLW+ DA+ERQ+SH ERN VR AYIH +EHL+ R+ M+QWW+DYL+  
Sbjct  345  FRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

Query  304  RESYAPPYTIGK  315
            +     PY  ++
Sbjct  405  QYEHITPYEYAR  416

316) ETAF_0751 in NC_017309


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  284 bits (1064),  Expect = 6e-78, Method: Compositional matrix adjust.
 Identities = 179/410 (44%), Positives = 275/410 (68%), Gaps = 27/410 (6%)

Query  1    MKLNARQVDAAKPREKAYKLADGAGLYLEVVPSGSRYWRMKYR--FNGKEKRMAFGVYPA  58
            MKLNARQV++AKP++K+YK+ADG+GLYLEV + GS+YWRMKYR   + KE R+AFGV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAQARALRDEAKKKLAEGIDPSFAKKEEKLVRDVQLNNTFQSVALEWHGTKVSRWSEG  118
            V+LAQARA RDEAKK L +GIDP   +KE +   +     TF+++A EWH+++  RWSE+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YTSDILEAFNKDIFPYIGQQPVNEIKPLVLLHVLRRMESRGATEKAKKVRQRCSEVFRYA  178
              S +L  ++  IFP IG   + ++K   LL  ++++++ G  + A++++QR + + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNPAADLTSAMSGHESKHYPFLTVEKLPDFFKALSSYTGSPLVVLAARLLILT  238
            +  +  + NPA+D+++A+S   ++HYP L   ++P+F+  L++Y G  +  +A  L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTGELRGAFWSEFDLEKAVWEIPAER------------MKMKRPHLVPLSTQALEIVQ  286
             VR++ELR A W EFD++K++W +PA R            MKMK  H+VPLS QA+ +++
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLKVMSGQYPQVFPGRNDPRKTMSEASINQVFKRIGYTGK--VTGHGFRHTMSTILHEEG  344
            QLK +SG+   +FPG +D+ K MSE ++N  ++ +GY  K  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNAIRGTYNH-AQYLEGRREMMQWYADYIDNI  389
            +   W    IE QL+H ++N +R++Y H ++ L+ RR M+QW ADY+D I
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

317) ECSE_0264 in NC_011415


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  283 bits (1060),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 179/408 (44%), Positives = 272/408 (67%), Gaps = 27/408 (6%)

Query  1    MKLNARQVDAAKPREKAYKLADGAGLYLEVVPSGSRYWRMKYR--FNGKEKRMAFGVYPA  58
            MKLNARQV++AKP++K+YK+ADG+GLYLEV + GS+YWRMKYR   + KE R+AFGV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAQARALRDEAKKKLAEGIDPSFAKKEEKLVRDVQLNNTFQSVALEWHGTKVSRWSEG  118
            V+LAQARA RDEAKK L +GIDP   +KE +   +     TF+++A EWH+++  RWSE+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YASDIIEAFNKDIFPYIGQLPVNEIKPLVLLNVLRRIESRGATEKAKKVRQRCSEVFRYA  178
              S ++  ++  IFP IG   + ++K   LL  ++++++ G  + A++++QR + + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNPAADLTSAMSGHESKHYPFLTVVELPDFFKALSGYTGSPLVVLAARLLILT  238
            +  +  + NPA+D+++A+S   ++HYP L    +P+F+  L++Y G  +  +A  L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTGELRGACWSEFDFEKAVWEIPAER------------MKMKRPHLVPLSTQALEIAQ  286
             VR++ELR A W EFDF+K++W +PA R            MKMK  H+VPLS QA+ + +
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLKVMSGQYPLVFPGRNDPRKTMSEASINQVFKRIGYTGK--VTGHGFRHTMSTILHEEG  344
            QLK +SG+  L+FPG +D+ K MSE ++N  ++ +GY  K  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNAIRGTYNHA-QYLDGRLEMMQWYADYID  387
            +   W    IE QL+H ++N +R++Y H+ + LD R  M+QW ADY+D
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

318) A225_4904 in NC_018106


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  283 bits (1060),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 177/410 (44%), Positives = 268/410 (66%), Gaps = 27/410 (6%)

Query  1    MKLTARQVETAKPKEKPYKLADGGGLYLLVNPNGKRYWRLKYRSLG--KEKLLAIGVYPD  58
            MKL ARQVETAKPK+K YK+ADGGGLYL V+++G +YWR+KYR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAEARSKREDAKRTLAAGNDPSLERKIEKLSRQQDAENSFEALTREWYQRRYDRWSVS  118
            V+LA+AR+KR++AK+ L  G DP  E+K  +   ++ +  +FE+++REW      RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YREEMMRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARGATEKVRKVRQRCGEVWKYA  178
             R  ++R +E  +FP IG   I+++K  +LLA + K++A G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VVTGRAEYNPAPDLASAVTPHEKEHYAFLTQDELPEFLQTLNTYAGSVLVKIAMQLLILT  238
            V  +  + NPA+D+A+A++     HY+ L    +PEFL  L +Y G V+ +IA++L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRPGELRQAEWQEFDFEKKVWNVPAER------------MKMRRPHLVPLSSQAIDLLN  286
             VR++ELR A W+EFDF+K +W VPA R            MKM+  H+VPLS QA+ LL+
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLKPMTGAGALLFPGRNDPKKPMSDMALTVLVRRIGYAGR--VTGHGFRHTMSTILHEQG  344
            QLK ++G   LLFPG +D+ K MS+ ++   +R +GY  +  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FDSAW----IELQLAHVDKNSIRGTYNHA-QYLEGRREMMQWYSDYLKLL  389
            +   W    IE QL+H ++N++R++Y H+ + L+ RR M+QW +DYL ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

319) EcHS_A0329 in NC_009800


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  283 bits (1058),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 176/408 (44%), Positives = 273/408 (67%), Gaps = 27/408 (6%)

Query  1    MKLNARQVDAAKPREKAYKLADGAGLYLEVVPSGSRYWRMKYR--FNGKEKRMAFGVYPA  58
            MKLNARQV++AKP++K+YK+ADG+GLYLEV + GS+YWRMKYR   + KE R+AFGV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAQARALRDDAKKKLAEGIDPSLAKKEEKLVRDVQLNNTFQAVALEWHGTKVSRWSEG  118
            V+LAQARA RD+AKK L +GIDP   +KE +   +     TF+++A EWH+++  RWSE+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YASDIIEAFNKDIFPYIGQQPVNEIKPLVLLNVLRRIESRGATEKAKKVRQRCSEVFRYA  178
              S ++  ++  IFP IG   + ++K   LL  ++++++ G  + A++++QR + + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNPAADLTSAMSGHESKHYPFLTVEELPDFFKALAGYTGSPLVVLAARLLILT  238
            +  +  + NPA+D+++A+S   ++HYP L    +P+F+  LA+Y G  +  +A  L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTGELRGAFWSEFDLEKAVWEIPAER------------MKMKRPHLVPLSTQALEIVQ  286
             VR++ELR A W EFD++K++W +PA R            MKMK  H+VPLS QA+ +++
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLKVMSGQYPLVFPGRNDPRKTMSEASINQVFKRIGYTGR--VTGHGFRHTMSTILHEEG  344
            QLK +SG+  L+FPG +D+ K MSE ++N  ++ +GY  +  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNAIRGTYNHAL-YLEGRREMMQWYADYIN  387
            +   W    IE QL+H ++N +R++Y H+   L+ RR M+QW ADY++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

320) KOX_02335 in NC_016612


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  279 bits (1044),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 177/410 (44%), Positives = 267/410 (66%), Gaps = 27/410 (6%)

Query  1    MKLTARQVETAKPKEKPYKLADGGGLYLLVNPNGKRYWRLKYRSLG--KEKLLAIGVYPD  58
            MKL ARQVETAKPK+K YK+ADGGGLYL V+++G +YWR+KYR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAEARSKREDAKRTLSAGNDPSLERKIEKLSRQQDAENSFEAITREWYQRRYDRWSVS  118
            V+LA+AR+KR++AK+ L  G DP  E+K  +   ++ +  +FE+I+REW      RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YREEMMRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARGATEKVRKVRQRCGEVWKYA  178
             R  ++R +E  +FP IG   I+++K  +LLA + K++A G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VVTGRAEYNPAPDLASAVTPHEKEHYAFLTQDELPEFLRTLNTYAGSVLVKIAMQLLILT  238
            V  +  + NPA+D+A+A++     HY+ L    +PEFL  L +Y G V+ +IA++L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRPGELRQAEWQEFDFEKKVWNVPAER------------MKMRRPHLVPLSSQAIDLLN  286
             VR++ELR A W+EFDF+K +W VPA R            MKM+  H+VPLS QA+ LL+
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLKPMTGAGALLFPGRNDPKKPMSDMALTVLVRRIGYAGR--VTGHGFRHTMSTILHEQG  344
            QLK ++G   LLFPG +D+ K MS+ ++   +R +GY  +  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IELQLAHVDKNSIRGTYNHA-QYLDGRREMMQWYGELLSFM  389
            +   W    IE QL+H ++N++R++Y H+ + LD RR M+QW ++ L ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

321) GEM_3075 in NC_018513


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  279 bits (1043),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 183/407 (45%), Positives = 278/407 (69%), Gaps = 22/407 (5%)

Query  1    MSLTDTAVRNLKPSDKPYKLADGGGMYLHVTPNGGKYWRLAFRLHG--KQKIYALGVYPQ  58
            M L    V   KP DK YK+ADGGG+YL+V+++G+KYWR+ +R  +  K+   A+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAEARQMRDEAKKLIKQGIDPVIERKQTVRRRSEEQATTFELIAREWHKTKRSAWTES  118
            V+LA+AR  RDEAKKL+ QGIDP  E+K++  +  +  A TFE IAREWH +++  W+E 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEA--QAENSGAYTFETIAREWHASNKR-WSED  117

Query  119  HAKKIMNSLEADIFPRLGDRPIGSISAPDLLMALRVIEKRGALEIAGRVLQRCNAVFRYA  178
            H  +++  LE  IFP++G   I  + +++LL +++ ++  G  ++A R+ QR  A+ RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VATGRIVANPAAELRGALKTPERKHHAALAHDELPEFLAKLAGYDGDPQTRLGLQLMVHT  238
            V  + I +NPA+++ GAL T   +H +AL+   +PEFLA+LA+Y G   TR++++L + T
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  FVRTGELRAASWAEFNLELSEWRIPAER------------MKMREEHIVPLSKQAVALLR  286
            FVR++ELR A W EF+++ S WR+PA R            MKM+EEHIVPLS+QA+ LL 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLQAVGAGSDLVFPSGNGRRNKWISENTLLYALYRLGYHSRA--TGHGFRATASTILNEM  344
            QL+ ++++ +L+FP++++  +  +SENT+  AL  +GY++++   GHGFR+ A   L E 
Sbjct  298  QLKQISGDKELLFPGDHDATKV-MSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGES  356

Query  345  GF-HPDWIERQLAHAERNKVRAAY-NRALYLAERRQMMQVWSDYLDI  389
            G+   D IERQL+H+ERN+VRAAY + +  L ERR M+Q W+DYLDI
Sbjct  357  GLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDI  403

322) SEEB0189_04710 in NC_021844


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  278 bits (1042),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 175/406 (44%), Positives = 264/406 (66%), Gaps = 27/406 (6%)

Query  1    MKLTARQVETAKPKDKPYKLADGGGLYLLVNPNGKRYWRLKYRSLG--KEKLLAIGVYPD  58
            MKL ARQVETAKPKDK YK+ADGGGLYL V+++G +YWR+KYR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAEARNKREDAKRTLAAGNDPSLERKIEKLSRQQDAENSFEAITREWYQRRYDRWSVS  118
            V+LA+AR KR++AK+ L  G DP  E+K  +   ++ +  +FE+I+REW      RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YREEMLRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARGATEKVRKVRQRCGEVWKYA  178
             R  +LR +E  +FP IG   I+++K  +LLA + K++A G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VVTGRAEYNPAPDLASAVTPHEKEHYAFLTQDELPEFLRTLNTYAGSVLVKIAMQLLILT  238
            V  +  + NPA+D+A+A++     HY+ L    +PEFL  L +Y G V+ +IA++L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRPGELRQAEWQEFDFERKVWNVPAER------------MKMRRPHMVPLSSQAIDLLN  286
             VR++ELR A W+EFDF++ +W VPA R            MKM+  H+VPLS QA+ LL+
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLKPMTGAGTLLFPGRNNPKKPMSDMALTVLVRRIGYAGR--VTGHGFRHTMSTILHEQG  344
            QLK ++G   LLFPG +++ K MS+ ++   +R +GY  +  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IELQLAHVDKNSIRGTYNHA-QYLEGRKEMMQWYGDF  385
            +   W    IE QL+H ++N++R++Y H+ + L+ R+ M+QW +D+
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADY  400

323) int in NC_010694


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  278 bits (1042),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 175/412 (43%), Positives = 269/412 (66%), Gaps = 29/412 (7%)

Query  1    MKLNARQVDTARGKDKPYKLADGGGLYLLVNPNGARYWRLKYRAAG--KEKLLAVGVYPD  58
            MKLNARQV+TA+ KDK YK+ADGGGLYL V+++G++YWR+KYR ++  KE  LA GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSDARRRRDEAKKILAAGGDP-GQEKQAEKQSKILAVQNSFEAIALEWHEHKKTNWSE  117
            V+L++AR +RDEAKK+L  G DP  ++K+A+ ++   +   +FE+IA EWH  +K  WSE
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN---SGAYTFETIAREWHASNK-RWSE  116

Query  118  GYATDILEYLSKDIFPFVGKRAINEIKPAEMLAVLRKMEQRGVLDKLKKTRQACRQIFTH  177
            +  + +L YL   IFP +G   I ++K +++LA ++K++  G  D  ++ +Q    I   
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  178  AVITGRAENNPVTDLAGALKAPKQKHFPHLNVDQIPPFLNDLSNYSGSMITRYATQLLMI  237
            AV  +  ++NP +D+AGAL + K +H+P L   ++P FL  L+ Y G ++TR A +L ++
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  238  TGLRTIELRASEWSDIDFDKGIWQIPAER------------MKMRRPHIVPISSQAKSLL  285
            T +R+ ELR + W ++DFDK++W++PA R            MKM+  HIVP+S QA  LL
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  286  EAIHQLTGRGKYVFPGRNDAGKPMSEASINQVIKRIGYDGKA--TGHGFRHTMSTILHEQ  343
            E + Q++G    +FPG +DA K MSE ++N  ++ +GYD K+   GHGFR      L E 
Sbjct  297  EQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGES  356

Query  344  GYNSAW----VETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDALE  390
            G    W    +E QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  357  G---LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

324) O3M_00580 in NC_018650


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  277 bits (1035),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 178/410 (44%), Positives = 264/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLR  118
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH S+  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNHAL-YLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R++Y H+   LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

325) O3O_25120 in NC_018661


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  277 bits (1035),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 178/410 (44%), Positives = 264/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLR  118
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH S+  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNHAL-YLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R++Y H+   LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

326) O3K_00550 in NC_018658


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  277 bits (1035),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 178/410 (44%), Positives = 264/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLR  118
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH S+  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNHAL-YLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R++Y H+   LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

327) int in NC_011740


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  277 bits (1035),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 176/405 (44%), Positives = 264/405 (66%), Gaps = 27/405 (6%)

Query  1    MKLTARQVETAKPKDKPYKLADGGGLYLLVNPNGKRYWRLKYRSLG--KEKLLAIGVYPD  58
            MKL ARQVETAKPKDK YK+ADGGGLYL V+++G +YWR+KYR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAEARSKREDAKRTLAVGNDPSLERKIEKLSRQQDAENSFEAITREWYQRRYDRWSVS  118
            V+LA+AR+KR++AK+ L  G DP  E+K  +   ++ +  +FE+I+REW      RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YREEMLRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARGATEKVRKVRQRCGEVWKYA  178
             R  +LR +E  +FP IG   I+++K  +LLA + K++A G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VVTGRAEYNPAPDLASAVTPHEKEHYAFLTQDELPEFLRTLNTYAGSVLVKIAMQLLILT  238
            V  +  + NPA+D+A+A++     HY+ L    +PEFL  L +Y G V+ +IA++L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRPGELRQAEWQEFDFERKVWNVPAER------------MKMRRPHLVPLSSQAIDLLN  286
             VR++ELR A W+EFDF++ +W VPA R            MKM+  H+VPLS QA+ LL+
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLKPMTGAGALLFPGRNNPKKSMSDMALIVLVRRIGYAGR--VTGHGFRHTMSTILHEQG  344
            QLK ++G   LLFPG +++ K MS+ ++   +R +GY  +  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IELQLAHVDKNSIRGTYNHA-QYLEGRREMMQWYGD  384
            +   W    IE QL+H ++N++R++Y H+ + L+ RR M+QW +D
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWAD  399

328) EcSMS35_0299 in NC_010498


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  277 bits (1038),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 179/410 (44%), Positives = 273/410 (67%), Gaps = 27/410 (6%)

Query  1    MKLNARQVDAAKPREKAYKLADGAGLYLEVVPSGSRYWRMKYR--FNGKEKRMAFGVYPA  58
            MKLNARQV++AKP++K+YK+ADG+GLYLEV + GS+YWRMKYR   + KE R+AFGV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAQARALRDEAKKKLAEGIDPSFAKKEEKLVRDVQLNNTFQAVALEWHGTKVSRWSEG  118
            V+LAQARA RDEAKK L +GIDP   +KE +   +     TF+++A EWH+++  RWSE+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YASDIIEAFNKDIFPYIGQLPVNDIKPLVLLNVLRRMESRGATEKAKKVRQRCSEVFRYA  178
              S ++  ++  IFP IG   + ++K   LL  ++++++ G  + A++++QR + + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNPAADLTSAMSGHESKHYPFLTVEELPDFFKALAGYTGSPLVVLAARLLILT  238
            +  +  + NPA+D+++A+S   ++HYP L    +P+F+  LA+Y G  +  +A  L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTGELRGAFWSEFDLEKAVWEIPAER------------MKMKRPHLVPLSTQALEIVQ  286
             VR++ELR A W EFD++K++W +PA R            MKMK  H+VPLS QA+ +++
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLKVISGQYPLVFPGRNDPRKTMSEASMNQVFKRIGYTGK--VTGHGFRHTMSTILHEEG  344
            QLK ISG+  L+FPG +D+ K MSE ++N  ++ +GY  K  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNAIRGTYNHAL-YLEGRREMMQWYADCIGRI  389
            +   W    IE QL+H ++N +R++Y H+   L+ RR M+QW AD ++ I
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

329) ECD_03516 in NC_012971


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  277 bits (1036),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 178/410 (44%), Positives = 264/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLR  118
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH S+  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNHAL-YLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R++Y H+   LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

330) ybl160 in NC_012892


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  277 bits (1036),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 178/410 (44%), Positives = 264/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLR  118
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH S+  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNHAL-YLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R++Y H+   LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

331) ECBD_0066 in NC_012947


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  277 bits (1036),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 178/410 (44%), Positives = 264/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLR  118
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH S+  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNHAL-YLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R++Y H+   LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

332) ECB_03516 in NC_012967


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  277 bits (1036),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 178/410 (44%), Positives = 264/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLR  118
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH S+  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNHAL-YLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R++Y H+   LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

333) intC in NC_004431


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  277 bits (1036),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 178/410 (44%), Positives = 264/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLR  118
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH S+  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNHAL-YLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R++Y H+   LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

334) ECIAI39_4188 in NC_011750


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  277 bits (1036),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 178/410 (44%), Positives = 264/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQISLKNTFEAIAREWHQSKADRWSLR  118
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH S+  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNHAL-YLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R++Y H+   LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

335) CE10_4227 in NC_017646


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  277 bits (1036),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 178/410 (44%), Positives = 264/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQISLKNTFEAIAREWHQSKADRWSLR  118
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH S+  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNHAL-YLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R++Y H+   LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

336) KPK_4426 in NC_011283


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  276 bits (1034),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 181/412 (44%), Positives = 273/412 (67%), Gaps = 29/412 (7%)

Query  1    MKLNARQVETAKPKDKPYKLADGGGMYLEVFPNGTKSWRMKYRIAG--KEKRVVFGVYPT  58
            MKLNARQVETAKPKDK YK+ADGGG+YLEV ++G+K WRMKYR ++  KE R+ FGV PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ITLADARSKRDDAKKLLVNGVDPSAFKKESKLAQIEEVKN-TFQQIALEWHNMKVKKWSA  117
            +TLA+AR+KRD+AKKLLV+G+DP   K E K AQ E+    TF+ IA EWH  + K+WS 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDP---KTEQKEAQAENSGAYTFETIAREWHASN-KRWSE  116

Query  118  GYASDILEAFNKDVFPFIGQRPVADIKPLELLNVLKKMEERGATEKAKKVRQRCGEVFRY  177
            +  S +L  ++  +FP IG   + ++K  +LL  +KK++  G  + A++++QR   + RY
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  178  AIVTGRAEYNPAPDLTSAMQGHESKHYPFLTIEELPAFFKALAGYSGSELVVLAARLMII  237
            A+  +  + NPA+D+++A+    ++HYP L    +P F+  LA+Y G  +  +A  L ++
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  238  TGVRTGELRGALWSEIYTDKGLWEISAER------------MKMRRPHIVPLSVQALEII  285
            T VR++ELR A W E+  DK+LW ++A R            MKM+  HIVPLS QA+ ++
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  286  EKIRAMTGNFHLMFPGRNDPSKTMSEASINQVFKRIGYTGR--VTGHGFRHTMSTVLHEQ  343
            E+++ ++G+ +L+FPG +D++K MSE ++N  ++ +GY  +  V GHGFR      L E 
Sbjct  297  EQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGES  356

Query  344  GYNTAW----IETQLAHLDKNAIRGTYNH-AQYLDGRREMLQWYADYMDSLE  390
            G    W    IE QL+H ++N +R++Y H ++ LD RR M+QW ADY+D ++
Sbjct  357  G---LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

337) SSON_3744 in NC_007384


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  276 bits (1032),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 178/410 (44%), Positives = 263/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLAGAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLR  118
            VTLA AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH S+  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNHAL-YLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R++Y H+   LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

338) PAGR_g2495 in NC_017554


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  276 bits (1031),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 177/412 (43%), Positives = 271/412 (66%), Gaps = 29/412 (7%)

Query  1    MQLNARQVETAKPKDKPYKLADGGGMYLEVFPNGTKSWRMKYRIAG--KEKCVVFGVYPT  58
            M+LNARQVETAKPKDK YK+ADGGG+YLEV ++G+K WRMKYR ++  KE  + FGV PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ITLADARSKRDDAKKLLVNGVDPSAFKQESKQAHIEEVKN-TFQQIALEWHNMKVKKWSA  117
            +TLA+AR+KRD+AKKLLV+G+DP   K E K+A+ E+    TF+ IA EWH  + K+WS 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDP---KTEQKEAQAENSGAYTFETIAREWHASN-KRWSE  116

Query  118  GYASDILEAFNKDVFPFIGQRPVADIKPLELLNVLKKMEDRGATEKAKKVRQRCGEVFRY  177
            +  S +L  ++  +FP IG   + ++K  +LL  +KK++  G  + A++++QR   + RY
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  178  AIVTGRAEYNPAPDLTSAMQGHESTHYPFLTTEELPAFFKALAGYSGSELMVLAARLLII  237
            A+  +  + NPA+D+++A+    + HYP L +  +P F+  LA+Y G  +  +A  L ++
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  238  TGLRTGELRGALWSEIDTKKALWEISAER------------MKMRRPHIIPLSTQALAII  285
            T +R++ELR A W E+D  K+LW ++A R            MKM+  HI+PLS QA+ ++
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  286  EQIRAMTGQFPLLFPGRNDPSKTMSEASINQVFKRIGYTGR--VTGHGFRHTMSTVLHEQ  343
            EQ++ ++G+  LLFPG +D++K MSE ++N  ++ +GY  +  V GHGFR      L E 
Sbjct  297  EQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGES  356

Query  344  GYNTAW----IETQLAHVDKNAIRGTYNH-AQYLDGRREMLQWYADYMASLE  390
            G    W    IE QL+H ++N +R++Y H ++ LD RR M+QW ADY+  ++
Sbjct  357  G---LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

339) APECO1_1051 in NC_008563


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  275 bits (1028),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 159/320 (50%), Positives = 230/320 (72%), Gaps = 1/320 (0%)

Query  1    MLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIG  60
            +L   I+P  ++   ++  +    F  +A  WH SN++WS++   R+L  L+  IFP IG
Sbjct  76   LLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIG  135

Query  61   NLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQELIDTNPAANLGGVT  120
            +  + +LK  H++   K ++  G  +VA R +Q+++ I+R AV+++ ID+NPA++++G  
Sbjct  136  SSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGAL  195

Query  121  TPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+RSSELRFARW E+DF
Sbjct  196  STTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFVRSSELRFARWDEFDF  254

Query  181  TNRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             + +W +PA RE I GV+YS RG KM+  HIVPLS Q++ +L Q+K+I+G++EL+FPGDH
Sbjct  255  DKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDH  314

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            ++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW+ DA+ERQ+SH ERN
Sbjct  315  DATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERN  374

Query  301  TVRMAYIHKAEHLEARKAMM  320
             VR AYIH +EHL+ R+ M+
Sbjct  375  NVRAAYIHTSEHLDERRLMV  394

340) intA_2 in NC_022370


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  275 bits (1028),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 159/320 (50%), Positives = 230/320 (72%), Gaps = 1/320 (0%)

Query  1    MLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIG  60
            +L   I+P  ++   ++  +    F  +A  WH SN++WS++   R+L  L+  IFP IG
Sbjct  76   LLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIG  135

Query  61   NLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQELIDTNPAANLGGVT  120
            +  + +LK  H++   K ++  G  +VA R +Q+++ I+R AV+++ ID+NPA++++G  
Sbjct  136  SSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGAL  195

Query  121  TPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+RSSELRFARW E+DF
Sbjct  196  STTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFVRSSELRFARWDEFDF  254

Query  181  TNRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             + +W +PA RE I GV+YS RG KM+  HIVPLS Q++ +L Q+K+I+G++EL+FPGDH
Sbjct  255  DKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDH  314

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            ++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW+ DA+ERQ+SH ERN
Sbjct  315  DATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERN  374

Query  301  TVRMAYIHKAEHLEARKAMM  320
             VR AYIH +EHL+ R+ M+
Sbjct  375  NVRAAYIHTSEHLDERRLMV  394

341) UM146_07320 in NC_017632


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  275 bits (1028),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 159/320 (50%), Positives = 230/320 (72%), Gaps = 1/320 (0%)

Query  1    MLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIG  60
            +L   I+P  ++   ++  +    F  +A  WH SN++WS++   R+L  L+  IFP IG
Sbjct  76   LLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIG  135

Query  61   NLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQELIDTNPAANLGGVT  120
            +  + +LK  H++   K ++  G  +VA R +Q+++ I+R AV+++ ID+NPA++++G  
Sbjct  136  SSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGAL  195

Query  121  TPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+RSSELRFARW E+DF
Sbjct  196  STTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFVRSSELRFARWDEFDF  254

Query  181  TNRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             + +W +PA RE I GV+YS RG KM+  HIVPLS Q++ +L Q+K+I+G++EL+FPGDH
Sbjct  255  DKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDH  314

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            ++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW+ DA+ERQ+SH ERN
Sbjct  315  DATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERN  374

Query  301  TVRMAYIHKAEHLEARKAMM  320
             VR AYIH +EHL+ R+ M+
Sbjct  375  NVRAAYIHTSEHLDERRLMV  394

342) UTI89_C2177 in NC_007946


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  275 bits (1028),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 159/320 (50%), Positives = 230/320 (72%), Gaps = 1/320 (0%)

Query  1    MLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIG  60
            +L   I+P  ++   ++  +    F  +A  WH SN++WS++   R+L  L+  IFP IG
Sbjct  76   LLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIG  135

Query  61   NLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQELIDTNPAANLGGVT  120
            +  + +LK  H++   K ++  G  +VA R +Q+++ I+R AV+++ ID+NPA++++G  
Sbjct  136  SSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGAL  195

Query  121  TPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            +    RHYPALP  R+PE+L R++AY+ GR +TR AV L L  F+RSSELRFARW E+DF
Sbjct  196  STTKARHYPALPSSRFPEFLARLAAYR-GRVMTRIAVELSLLTFVRSSELRFARWDEFDF  254

Query  181  TNRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             + +W +PA RE I GV+YS RG KM+  HIVPLS Q++ +L Q+K+I+G++EL+FPGDH
Sbjct  255  DKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDH  314

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            ++ K M ENTVN ALR MGYDTK ++CGHGFR+MA +AL ESGLW+ DA+ERQ+SH ERN
Sbjct  315  DATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERN  374

Query  301  TVRMAYIHKAEHLEARKAMM  320
             VR AYIH +EHL+ R+ M+
Sbjct  375  NVRAAYIHTSEHLDERRLMV  394

343) intC in NC_008258


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  275 bits (1030),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 178/410 (44%), Positives = 261/410 (64%), Gaps = 27/410 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH     RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHA-SNKRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K   LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N A+  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R +Y H+   LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

344) EAE_02780 in NC_015663


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  275 bits (1028),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 172/405 (43%), Positives = 264/405 (66%), Gaps = 21/405 (5%)

Query  1    MKLTARQVETAKPKEKPYKLADGGGLYLLVNPNGKRYWRLKYRSLG--KEKLLAIGVYPD  58
            MKL ARQVETAKPK+K YK+ADGGGLYL V+++G +YWR+KYR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLSEARGKREDAKRTLAAGNDPSLERKIEKLSRQQNAENSFEAITREWYQRRYDRWSVS  118
            V+L++AR+KR++AK+ L  G DP  E+K  +   ++++  +FE+I+REW      RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YREEMLRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARGATEKVRKVRQRCGEVWKYA  178
             R  +LR +E  +FP IG   I+++K  +LLA + K++A G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VVTGRAEYNPAPALASAVTPHEKEHYAFLTQDELPEFLRTLNTYAGSVIVKIAMQLLILT  238
            V  +  + NPA+ +A+A++     HY+ L    +PEFL  L +Y G V+ +IA++L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRPGELRQAEWREFDFERKVWNVPAER------------MKMRRPHLVPLSGQAIDLLN  286
             VR++ELR A W EFDF++ +W VPA R            MKM+  H+VPLS QA+ LL+
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLKPMTEAGTLLFPGRNNPKKPMSEMALTVLVRRIGYAGR--VTGHGFRHTMSTILHEQG  344
            QLK ++    LLFPG +++ K MSE ++   +R +GY  +  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  F-NSAWIELQLAHVDKNSIRGTYNHA-QYLEGRREMMQWYSNYIS  387
            + +   IE QL+H ++N++R++Y H+ + L+ RR M+QW ++Y+ 
Sbjct  358  LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

345) ECABU_c41260 in NC_017631


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  275 bits (1028),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 177/420 (43%), Positives = 268/420 (64%), Gaps = 27/420 (6%)

Query  1    MALTDVKVKTAKPKEKPYKLADSGGMYLLINANGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPK+K YK+AD+GG+YL ++A+GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQSKADRWSLR  118
            VTLA+AR KR EA+K+L  G DP   +KE +   + S   TFE++AREWH S+  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVITLFK  286
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESVNQVIELLGY--KGRLTGHGFRHTMSTILHEKG  344
            QL  IS +  L+F G +D+ K +S ++VN  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IETQLAHVDKNAIRGTYNH-AQYLDGRREMMQWYADYIGSLTRENVIHGDF  399
            +   W    IE QL+H ++N +R++Y H ++ LD RR M+QW ADY++ +  E++   ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEY  414

346) intC in NC_017652


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  275 bits (1028),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 177/420 (43%), Positives = 268/420 (64%), Gaps = 27/420 (6%)

Query  1    MALTDVKVKTAKPKEKPYKLADSGGMYLLINANGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPK+K YK+AD+GG+YL ++A+GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQSKADRWSLR  118
            VTLA+AR KR EA+K+L  G DP   +KE +   + S   TFE++AREWH S+  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVITLFK  286
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESVNQVIELLGY--KGRLTGHGFRHTMSTILHEKG  344
            QL  IS +  L+F G +D+ K +S ++VN  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IETQLAHVDKNAIRGTYNH-AQYLDGRREMMQWYADYIGSLTRENVIHGDF  399
            +   W    IE QL+H ++N +R++Y H ++ LD RR M+QW ADY++ +  E++   ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEY  414

347) intC in NC_017651


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  275 bits (1028),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 177/420 (43%), Positives = 268/420 (64%), Gaps = 27/420 (6%)

Query  1    MALTDVKVKTAKPKEKPYKLADSGGMYLLINANGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPK+K YK+AD+GG+YL ++A+GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQSKADRWSLR  118
            VTLA+AR KR EA+K+L  G DP   +KE +   + S   TFE++AREWH S+  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVITLFK  286
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESVNQVIELLGY--KGRLTGHGFRHTMSTILHEKG  344
            QL  IS +  L+F G +D+ K +S ++VN  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IETQLAHVDKNAIRGTYNH-AQYLDGRREMMQWYADYIGSLTRENVIHGDF  399
            +   W    IE QL+H ++N +R++Y H ++ LD RR M+QW ADY++ +  E++   ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEY  414

348) ETEC_3899 in NC_017633


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  275 bits (1028),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 174/410 (43%), Positives = 262/410 (64%), Gaps = 27/410 (6%)

Query  1    MALTDIKVKTAKPKEKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPK+K YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKILAAGGNPGVAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLR  118
            VTLA+AR KR EA+K+L  G +P   +KE +  +  +   TFE+IAREWH S+  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLACALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIALFK  286
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPITKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  I+ +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNAIRGTYNH-AQYLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N +R++Y H ++ LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

349) ETAC_13020 in NC_020796


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  274 bits (1026),  Expect = 6e-75, Method: Compositional matrix adjust.
 Identities = 179/410 (44%), Positives = 265/410 (65%), Gaps = 27/410 (6%)

Query  1    MKLNARQVEASKAKDKPYKLADGGGLYLLVNPNGTKYWRLKYRVAG--KEKLLAVGVYPN  58
            MKLNARQVE++K+KDK YK+ADGGGLYL V+++G+KYWR+KYR ++  KE  LA GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADARVKREDAKRVLAAGGDPGQEKQEEKRAKVMAVTNSFEKLAREWHEHKRPTWSKG  118
            VTLA+AR KR++AK++L  G DP  E++E +  +  + + +FE +AREWH  ++  WS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASNKR-WSED  117

Query  119  YADDILEYLRKDIFPYIGKRAITDIKPMDMLAVLRKMEQRGVLDKLKKTRQACRQIFTYA  178
                +L YL   IFP IG   I ++K  ++LA ++K++  G  D  ++ +Q    I  YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VITGRAEHNPVVDLASALKTPKQKHFPHLMADQLGEFLRALADYSGSRVTQNATRLLMLT  238
            V  +  + NP  D+A+AL T K +H+P L + ++ EFL  LA Y G  +T+ A  L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTVELRAAEWAEVDLDLSLWQIPPER------------MKMRRPHIVPLSEQALAIMQ  286
             VR+ ELR A W E D+D SLW++P+ R            MKM+  HIVPLS QA+ +++
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  EMRRISGKGKYIFPGRNDAGKPMSEASINQVIKRIGYDGKA--TGHGFRHTMSTILHEQG  344
            ++++ISG    +FPG +DA K MSE ++N  ++ +GYD K+   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  YNTAW----VETQLAHADKNSIRGTYNHA-QYLDGRREMLQWYADYLDAL  389
                W    +E QL+H+++N++R++Y H+ + LD RR M+QW ADYLD +
Sbjct  358  ---LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

350) SFxv_4026 in NC_017328


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  273 bits (1022),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 176/408 (44%), Positives = 261/408 (64%), Gaps = 27/408 (6%)

Query  12   INDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPDVT  69
            +N  +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P VT
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  70   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  129
            LA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH     RWS   R
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHA-SNKRWSEDHR  119

Query  130  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  189
              ++  +E  IFP IG   I ++K   LL +++K++  G  +  ++++QR   + RYA+ 
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  190  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  249
             +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT V
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  250  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  297
            R+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ QL
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  298  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQGFN  355
              IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G+ 
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGL-  358

Query  356  SAW----IEMQLAHVDKNSIRGTYNHAL-YLDGRREMMQWYADYIDSL  398
              W    IE QL+H ++N++R++Y H+   LD RR M+QW ADY+D +
Sbjct  359  --WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

351) S4835 in NC_004741


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  273 bits (1022),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 176/408 (44%), Positives = 261/408 (64%), Gaps = 27/408 (6%)

Query  12   INDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPDVT  69
            +N  +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P VT
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  70   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  129
            LA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH     RWS   R
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHA-SNKRWSEDHR  119

Query  130  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  189
              ++  +E  IFP IG   I ++K   LL +++K++  G  +  ++++QR   + RYA+ 
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  190  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  249
             +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT V
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  250  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  297
            R+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ QL
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  298  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQGFN  355
              IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G+ 
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGL-  358

Query  356  SAW----IEMQLAHVDKNSIRGTYNHAL-YLDGRREMMQWYADYIDSL  398
              W    IE QL+H ++N++R++Y H+   LD RR M+QW ADY+D +
Sbjct  359  --WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

352) SF3698 in NC_004337


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  273 bits (1022),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 176/408 (44%), Positives = 261/408 (64%), Gaps = 27/408 (6%)

Query  12   INDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPDVT  69
            +N  +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P VT
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  70   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  129
            LA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH     RWS   R
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHA-SNKRWSEDHR  119

Query  130  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  189
              ++  +E  IFP IG   I ++K   LL +++K++  G  +  ++++QR   + RYA+ 
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  190  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  249
             +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT V
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  250  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  297
            R+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ QL
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  298  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQGFN  355
              IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G+ 
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGL-  358

Query  356  SAW----IEMQLAHVDKNSIRGTYNHAL-YLDGRREMMQWYADYIDSL  398
              W    IE QL+H ++N++R++Y H+   LD RR M+QW ADY+D +
Sbjct  359  --WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

353) Q7A_2891 in NC_017857


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  272 bits (1019),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 174/402 (44%), Positives = 262/402 (66%), Gaps = 19/402 (4%)

Query  2    LTDVKIKALKPKDKLYAVSDEKGLYIEVSTTGGKWWRFKFR--FDGKQKRLSVGTYPDVG  59
            L   ++ + KPKDK Y ++D  GLY+EVS+ G+K WR K+R   D K+ RL+ G  P V 
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  60   LKQAREQRDELRKQIANGVDPSDIRKAEKQLNAGQLSFEFVAREWHQKFRHRWSEKYALN  119
            L QAR +RDE +K + +G+DP   +K  +  N+G  +FE +AREWH     RWSE     
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHAS-NKRWSEDHRSR  121

Query  120  TISRLEREVFPFIGSKNINDIKAPELLAVLRRMESRGILETAHRVHQKCGQIFRYAVATG  179
             +  LE  +FP IGS +I ++K+++LLA ++++++ G  + A+R++Q+   I RYAV  +
Sbjct  122  VLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQND  181

Query  180  RAERDPSTDLKGALPPVKVKHHASIIEPKQIGGLLRAINGYSGSFVTLCALRLAPLVFVR  239
              + +P++D+ GAL+  K +H +++  ++ +  +L  + +Y G  +T  A+ L+ L FVR
Sbjct  182  YIDSNPASDMAGALSTTKARHYPALPSSR-FPEFLARLAAYRGRVMTRIAVELSLLTFVR  240

Query  240  PGELRHAEWTEFDLEKAEWRIPAEK------------MKMASVHIVPLSKQAIAVIETLK  287
            ++ELR A W EFD++K+ WR+PA +            MKM   HIVPLS+QA+ ++E LK
Sbjct  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300

Query  288  PLTGSGKYLFPSIRTITRPMSENTVNGALRRLGY-TGDEMVGHGFRSMASTILNEQG-WN  345
             ++G    LFP+ +  T+ MSENTVN+ALR +GY T  E+ GHGFR+MA   L E G W+
Sbjct  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360

Query  346  RDAIERQLAHSERDGVRAAY-NYAEYLSERKRMMQSWANYLD  386
             DAIERQL+HSER+ VRAAY + +E L ER+ M+Q WA+YLD
Sbjct  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

354) UMNK88_5213 in NC_017641


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  271 bits (1014),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 161/306 (53%), Positives = 233/306 (77%), Gaps = 3/306 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGG--KEKMLALGKYPE  58
            M L+  +V +AKP  K+YK++DG G+ L V ++GSKYWR++YR  +  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLadararrdearKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHS  118
            V+LA+ARA+RDEA+KLL +G+DP  ++K  + E +  A TFE +AR+WHASN++WS  H 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-NSGAYTFETIAREWHASNKRWSEDHR  119

Query  119  ARVLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
            +RVL+ LE  +F  IG  +I +LKT +LL PIK V++SG+ +VA RLQQR TAIMR+AVQ
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFI  238
            ++ ID NPA ++AGA++T+K +H +AL  +R+PE+L R+  Y GR +TR+AVEL+LL F+
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  239  RSSELHFARWSEVDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKI  298
            RSSEL+FARW E DF+ ++W +P+ RE++ GV+ S RG KM+  H+VPLSRQA+ +LE++
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  299  KSMSGN  304
            K +SG+
Sbjct  300  KQISGD  305

355) NAL212_1009 in NC_015222


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  271 bits (1013),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 169/404 (42%), Positives = 272/404 (68%), Gaps = 22/404 (5%)

Query  2    LTDTAIRNAKPRDKFYKVSDSGGLYLLVKATG-KYWRMDYRFVGKRKT--LAIGVYPTVS  58
            L    +  AKP+DK YK++D+GGLYL V A G KYWRM YR  + +K   LA+GV PTV+
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  59   LVAARKKRDEARELLGKHIDPSLAKAINKRIVLTAAENTFKAVALEWHTKTSKSWAESTA  118
            L  AR KRDEA+ LL + IDP   +   +     ++  TF ++A EWH+ ++K W+E   
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQ--AENSGAYTFETIAREWHA-SNKRWSEDHR  119

Query  119  NNIKRYLEKDIFPWLGNRAIKDIGAPDLLAVLRKIESRGAHEKAQRCREYAGRVFRYAIA  178
            + + RYLE  IFP +G+  I+++ +++LLA ++K+++ G H+ AQR ++    + RYA+ 
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  179  TGRAERDPSGDLRGALTPVKVKHHASITEPKAIGALLRSIWGFNGSYITKCALQLAPLVF  238
             +  + +P++D+ GAL+  K +H +++  ++ +  +L  + ++ G  +T+ A++L+ L F
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSR-FPEFLARLAAYRGRVMTRIAVELSLLTF  238

Query  239  VRPGELRQAEWQEIDFDKQEWRIAGNK------------MKMGEAHIIPLSPQVIEILQS  286
            VR++ELR A W+E+DFDK  WR+++++            MKM E HI+PLS Q + +L+ 
Sbjct  239  VRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQ  298

Query  287  IHPLTGDGQYIFPSIRSSARPMSENTINAALRRMGYE-KDEMTGHGFRSMASTLLHEHG-  344
            +  ++GD + +FP+ + +++ MSENT+N+ALR MGY+ K E+ GHGFR+MA   L E G 
Sbjct  299  LKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGL  358

Query  345  WPHEAIERQLAHAERNKVVAAY-NYAEHLPKRKEMMRWWADYLD  387
            W+++AIERQL+H+ERN+V AAY + +EHL  R+ M++WWADYLD
Sbjct  359  WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

356) PAU_01003 in NC_012962


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  271 bits (1012),  Expect = 8e-74, Method: Compositional matrix adjust.
 Identities = 171/418 (41%), Positives = 271/418 (65%), Gaps = 27/418 (6%)

Query  1    MKLNARQVESAKAKATDYKLADGSGLYLLVKKNGARYWRLKYRIAG--KEKLLALGIYPN  58
            MKLNARQVE+AK+K   YK+ADG+GLYL V  +G++YWR+KYR ++  KE  LA+G+ P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   LSLANARAKRDEAKQHLANGVDPAEVKKTKQKEIIRQATNTFEAIAKEWHSYKLPNWSVG  118
            ++LA+ARAKRDEAK+ L +G+DP   +K  Q E    ++ TFE+IA+EWH+ +   WS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE--NSGAYTFETIAREWHASN-KRWSED  117

Query  119  YADDLLESFNKDIFPYIGKRIITDIKPLDMLETLRKMEQRGVLDKLKKIRQACSQVFKYA  178
                +L  ++  IFP IG   I ++K  ++L  ++K++  G  D  ++++Q  + + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRSEYNPAAELSGALASPKVKHFPHLLADELPLFLQTLSQYKGSIITQIATKLLLLT  238
            +  +  + NPA++++GAL++ K +H+P L +  +P FL  L+ Y+G ++T+IA  L LLT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTIELRAAKWDELDLDRKIWEIPLER------------MKMRRTHIVPLSEQVLSLFK  286
             VR+ ELR A+WDE+D+D+ +W +P  R            MKM+  HIVPLS Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  TLEVITGRFEFIFHGRNDPNKPMSEAAINQVIKRIGYGSRA--TGHGFRHTMSTILHEQG  344
             L  I+G  E++F G +D+ K MSE ++N  ++ +GY++++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  YNTAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDSLEYGENVIY  397
                W    IE QL+H ++N++R++Y H ++ LD RR M+QW ADY+D ++Y +   Y
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPY  412

357) YE4117 in NC_008800


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  270 bits (1010),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 262/411 (64%), Gaps = 27/411 (6%)

Query  1    MKLNARQVETAKQKEKSYKLTDGGGLYLEVSASGAKYWRMKYRYGG--KEKRIAFGVYPH  58
            MKLNARQVETAK K+K+YK++DGGGLYLEVSA G+KYWRMKYR  +  KE R+AFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQKRETAKKLLASGTDPGETKKAEKLAQKIAMENSFELMAREWHKNKADRWSLR  118
            V+LA+AR KR+ AKKLL  G DP   +K  +  +  A   +FE +AREWH     RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGA--YTFETIAREWH-ASNKRWSED  117

Query  119  YREEIIDTFEKDIFPFIGRRPIADIKPMELLETLKRMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL  +K+++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLAGALQTHKKQHLPFLTAQELPYFLRDLAGYTGSIITKTATRIIMLT  238
            +  +  + NPA+D+AGAL T K +H P L +  +P FL  LA+Y G ++T+ A  + +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDLDLDKGLWHIPPEH------------MKMKRPHVVPLSIQVITAFK  286
             VR+ ELRFARW+++D+DK+LW++P+ +            MKMK  H+VPLS Q +  + 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLHPLTHHYPLVFIGRNDHRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  ++ +  L+F G +D  K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  YNSAW----IETQLAHVDKNSIRGTYNH-AQYLDGRQEMLQWYSDYMDSLE  390
                W    IE QL+H ++N++R++Y H ++ LD R+ M+QW +DY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

358) intL in NC_002655


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  270 bits (1010),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 173/410 (43%), Positives = 264/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPK++ YK+ADGGG+YL ++A+GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLR  118
            VTLA+AR KR EA+K+L  G DP   +KE +   + S   TFE++AREWH ++  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL+ LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFAHWEDIDFEAKLWEIPAE------------VMKMKRPHIVPPSEQVIALFK  286
             VR+ ELRFA+W+++DF+  LW +PA              MKMK  HIVP S Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R++Y H ++ LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

359) ECs4534 in NC_002695


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  270 bits (1010),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 173/410 (43%), Positives = 264/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPK++ YK+ADGGG+YL ++A+GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLR  118
            VTLA+AR KR EA+K+L  G DP   +KE +   + S   TFE++AREWH ++  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL+ LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFAHWEDIDFEAKLWEIPAE------------VMKMKRPHIVPPSEQVIALFK  286
             VR+ ELRFA+W+++DF+  LW +PA              MKMK  HIVP S Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R++Y H ++ LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

360) intL in NC_013008


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  270 bits (1010),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 173/410 (43%), Positives = 264/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPK++ YK+ADGGG+YL ++A+GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLR  118
            VTLA+AR KR EA+K+L  G DP   +KE +   + S   TFE++AREWH ++  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL+ LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFAHWEDIDFEAKLWEIPAE------------VMKMKRPHIVPPSEQVIALFK  286
             VR+ ELRFA+W+++DF+  LW +PA              MKMK  HIVP S Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R++Y H ++ LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

361) ECO55CA74_21080 in NC_017656


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  270 bits (1010),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 173/410 (43%), Positives = 264/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPK++ YK+ADGGG+YL ++A+GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLR  118
            VTLA+AR KR EA+K+L  G DP   +KE +   + S   TFE++AREWH ++  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL+ LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFAHWEDIDFEAKLWEIPAE------------VMKMKRPHIVPPSEQVIALFK  286
             VR+ ELRFA+W+++DF+  LW +PA              MKMK  HIVP S Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R++Y H ++ LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

362) CDCO157_4272 in NC_017906


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  270 bits (1010),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 173/410 (43%), Positives = 264/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPK++ YK+ADGGG+YL ++A+GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLR  118
            VTLA+AR KR EA+K+L  G DP   +KE +   + S   TFE++AREWH ++  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL+ LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFAHWEDIDFEAKLWEIPAE------------VMKMKRPHIVPPSEQVIALFK  286
             VR+ ELRFA+W+++DF+  LW +PA              MKMK  HIVP S Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R++Y H ++ LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

363) A1122_00590 in NC_017168


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  270 bits (1011),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 275/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAG--KEKLLALGVYPD  58
            MKLNARQVETAKPKDK+YK+ADGGGLYL V+++GS+YWR+KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSES  118
            V+LA AR KRDEAKK++  G DP  ++++ +   +  ++ TFE+I+REW      RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYA  178
             R  ++  +E  +FP IG   I+++K  +L+A + K++  G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILT  238
            +  +  + NPA+D+A+A++  K  HYP L  + +PEFL+ LA+Y G ++ ++A+ L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GTRPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILK  286
              R++ELR A W EFDFD++LW +PA R            MKM+  H+VPL+ QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIQPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRA--TGHGFRHTMSTILHEQG  344
            Q++ ISG  +++FPG  + +K +SE T+N  +R +GY+ ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLE  390
            +   W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

364) YpAngola_A3853 in NC_010159


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  270 bits (1011),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 275/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAG--KEKLLALGVYPD  58
            MKLNARQVETAKPKDK+YK+ADGGGLYL V+++GS+YWR+KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSES  118
            V+LA AR KRDEAKK++  G DP  ++++ +   +  ++ TFE+I+REW      RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYA  178
             R  ++  +E  +FP IG   I+++K  +L+A + K++  G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILT  238
            +  +  + NPA+D+A+A++  K  HYP L  + +PEFL+ LA+Y G ++ ++A+ L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GTRPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILK  286
              R++ELR A W EFDFD++LW +PA R            MKM+  H+VPL+ QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIQPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRA--TGHGFRHTMSTILHEQG  344
            Q++ ISG  +++FPG  + +K +SE T+N  +R +GY+ ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLE  390
            +   W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

365) YPC_0922 in NC_017265


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  270 bits (1011),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 275/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAG--KEKLLALGVYPD  58
            MKLNARQVETAKPKDK+YK+ADGGGLYL V+++GS+YWR+KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSES  118
            V+LA AR KRDEAKK++  G DP  ++++ +   +  ++ TFE+I+REW      RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYA  178
             R  ++  +E  +FP IG   I+++K  +L+A + K++  G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILT  238
            +  +  + NPA+D+A+A++  K  HYP L  + +PEFL+ LA+Y G ++ ++A+ L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GTRPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILK  286
              R++ELR A W EFDFD++LW +PA R            MKM+  H+VPL+ QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIQPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRA--TGHGFRHTMSTILHEQG  344
            Q++ ISG  +++FPG  + +K +SE T+N  +R +GY+ ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLE  390
            +   W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

366) int4 in NC_005810


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  270 bits (1011),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 275/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAG--KEKLLALGVYPD  58
            MKLNARQVETAKPKDK+YK+ADGGGLYL V+++GS+YWR+KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSES  118
            V+LA AR KRDEAKK++  G DP  ++++ +   +  ++ TFE+I+REW      RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYA  178
             R  ++  +E  +FP IG   I+++K  +L+A + K++  G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILT  238
            +  +  + NPA+D+A+A++  K  HYP L  + +PEFL+ LA+Y G ++ ++A+ L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GTRPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILK  286
              R++ELR A W EFDFD++LW +PA R            MKM+  H+VPL+ QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIQPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRA--TGHGFRHTMSTILHEQG  344
            Q++ ISG  +++FPG  + +K +SE T+N  +R +GY+ ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLE  390
            +   W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

367) int in NC_003143


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  270 bits (1011),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 275/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAG--KEKLLALGVYPD  58
            MKLNARQVETAKPKDK+YK+ADGGGLYL V+++GS+YWR+KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSES  118
            V+LA AR KRDEAKK++  G DP  ++++ +   +  ++ TFE+I+REW      RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYA  178
             R  ++  +E  +FP IG   I+++K  +L+A + K++  G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILT  238
            +  +  + NPA+D+A+A++  K  HYP L  + +PEFL+ LA+Y G ++ ++A+ L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GTRPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILK  286
              R++ELR A W EFDFD++LW +PA R            MKM+  H+VPL+ QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIQPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRA--TGHGFRHTMSTILHEQG  344
            Q++ ISG  +++FPG  + +K +SE T+N  +R +GY+ ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLE  390
            +   W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

368) int in NC_017154


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  270 bits (1011),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 275/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAG--KEKLLALGVYPD  58
            MKLNARQVETAKPKDK+YK+ADGGGLYL V+++GS+YWR+KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSES  118
            V+LA AR KRDEAKK++  G DP  ++++ +   +  ++ TFE+I+REW      RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYA  178
             R  ++  +E  +FP IG   I+++K  +L+A + K++  G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILT  238
            +  +  + NPA+D+A+A++  K  HYP L  + +PEFL+ LA+Y G ++ ++A+ L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GTRPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILK  286
              R++ELR A W EFDFD++LW +PA R            MKM+  H+VPL+ QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIQPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRA--TGHGFRHTMSTILHEQG  344
            Q++ ISG  +++FPG  + +K +SE T+N  +R +GY+ ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLE  390
            +   W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

369) int in NC_017160


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  270 bits (1011),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 275/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAG--KEKLLALGVYPD  58
            MKLNARQVETAKPKDK+YK+ADGGGLYL V+++GS+YWR+KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSES  118
            V+LA AR KRDEAKK++  G DP  ++++ +   +  ++ TFE+I+REW      RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYA  178
             R  ++  +E  +FP IG   I+++K  +L+A + K++  G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILT  238
            +  +  + NPA+D+A+A++  K  HYP L  + +PEFL+ LA+Y G ++ ++A+ L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GTRPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILK  286
              R++ELR A W EFDFD++LW +PA R            MKM+  H+VPL+ QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIQPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRA--TGHGFRHTMSTILHEQG  344
            Q++ ISG  +++FPG  + +K +SE T+N  +R +GY+ ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLE  390
            +   W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

370) y3271 in NC_004088


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  270 bits (1011),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 275/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAG--KEKLLALGVYPD  58
            MKLNARQVETAKPKDK+YK+ADGGGLYL V+++GS+YWR+KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSES  118
            V+LA AR KRDEAKK++  G DP  ++++ +   +  ++ TFE+I+REW      RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYA  178
             R  ++  +E  +FP IG   I+++K  +L+A + K++  G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILT  238
            +  +  + NPA+D+A+A++  K  HYP L  + +PEFL+ LA+Y G ++ ++A+ L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GTRPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILK  286
              R++ELR A W EFDFD++LW +PA R            MKM+  H+VPL+ QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIQPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRA--TGHGFRHTMSTILHEQG  344
            Q++ ISG  +++FPG  + +K +SE T+N  +R +GY+ ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLE  390
            +   W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

371) YPN_3086 in NC_008149


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  270 bits (1011),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 275/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAG--KEKLLALGVYPD  58
            MKLNARQVETAKPKDK+YK+ADGGGLYL V+++GS+YWR+KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSES  118
            V+LA AR KRDEAKK++  G DP  ++++ +   +  ++ TFE+I+REW      RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYA  178
             R  ++  +E  +FP IG   I+++K  +L+A + K++  G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILT  238
            +  +  + NPA+D+A+A++  K  HYP L  + +PEFL+ LA+Y G ++ ++A+ L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GTRPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILK  286
              R++ELR A W EFDFD++LW +PA R            MKM+  H+VPL+ QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIQPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRA--TGHGFRHTMSTILHEQG  344
            Q++ ISG  +++FPG  + +K +SE T+N  +R +GY+ ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLE  390
            +   W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

372) int in NC_014029


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  270 bits (1011),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 275/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAG--KEKLLALGVYPD  58
            MKLNARQVETAKPKDK+YK+ADGGGLYL V+++GS+YWR+KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSES  118
            V+LA AR KRDEAKK++  G DP  ++++ +   +  ++ TFE+I+REW      RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYA  178
             R  ++  +E  +FP IG   I+++K  +L+A + K++  G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILT  238
            +  +  + NPA+D+A+A++  K  HYP L  + +PEFL+ LA+Y G ++ ++A+ L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GTRPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILK  286
              R++ELR A W EFDFD++LW +PA R            MKM+  H+VPL+ QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIQPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRA--TGHGFRHTMSTILHEQG  344
            Q++ ISG  +++FPG  + +K +SE T+N  +R +GY+ ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLE  390
            +   W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

373) Pat9b_1012 in NC_014837


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  269 bits (1006),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 176/408 (44%), Positives = 263/408 (65%), Gaps = 27/408 (6%)

Query  1    MKLNVRQIETAKPKDKAWKLADGGGLYLEIFPTGGKSWRLKYRFAG--KEKRVVFGLYPA  58
            MKLN RQ+ETAKPKDK+ K+ADGGGLYLE+ + G+K WR+KYR ++  KE R+ FG+ P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLAQARGKREDAKRILAAGGDPGAAKQEAKQAKILAVNNNFEAMAREWHGTKRANWSQG  118
            VTLAQAR+KR++AK++L  G DP + ++EA+  +  +    FE++AREWH++++  WS++
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASNK-RWSED  117

Query  119  YADDILEYLRKDIFPHIGKMPVTEITPMLMLAVLRKMEQRGVLDKLKKTRQACSQIYVYA  178
                +L YL   IFPHIG   + ++    +LA ++K++  G  D  ++ +Q  + I  YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNPVSELAGALKSPKQKHFPHLLNNEIGAFLRALCGYSGSKMTQYATRLLMLT  238
            +  +  + NP S++AGAL + K +H+P L ++ +  FL  L +Y G  MT+ A  L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GTRTIELRAAEWREFDLSKGLWEIPEGR------------MKMRRKHSVPLSRQAVELLE  286
              R+ ELR A W EFD+ K+LW +P  R            MKM+  H VPLSRQA+ LLE
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  EIQQLTGRGKYVFPGRSNAGKPMSEATINQVIKRVGYDGRAT--GHGFRHTMSTVLHEQG  344
            +++Q++G    +FPG  +A K MSE T+N  ++ +GYD ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  YNSAW----IEVQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYLD  387
                W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADYLD
Sbjct  358  ---LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

374) YPDSF_0629 in NC_009381


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  269 bits (1007),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 275/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAG--KEKLLALGVYPD  58
            MKLNARQVETAKPKDK+YK+ADGGGLYL V+++GS+YWR+KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSES  118
            V+LA AR KRDEAKK++  G DP  ++++ +   +  ++ TFE+I+REW      RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYA  178
             R  ++  +E  +FP IG   I+++K  +L+A + K++  G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILT  238
            +  +  + NPA+D+A+A++  K  HYP L  + +PEFL+ LA+Y G ++ ++A+ L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GTRPGELRQAEWVEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILK  286
              R++ELR A W EFDFD++LW +PA R            MKM+  H+VPL+ QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIQPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRA--TGHGFRHTMSTILHEQG  344
            Q++ ISG  +++FPG  + +K +SE T+N  +R +GY+ ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLE  390
            +   W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

375) YpsIP31758_0884 in NC_009708


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  269 bits (1006),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 274/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAG--KEKLLAVGVYPD  58
            MKLNARQVETAKPKDK+YK+ADGGGLYL V+++GS+YWR+KYR ++  KE  LA GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSES  118
            V+LA AR KRDEAKK++  G DP  ++++ +   +  ++ TFE+I+REW      RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYA  178
             R  ++  +E  +FP IG   I+++K  +L+A + K++  G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILT  238
            +  +  + NPA+D+A+A++  K  HYP L  + +PEFL+ LA+Y G ++ ++A+ L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GTRPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILK  286
              R++ELR A W EFDFD++LW +PA R            MKM+  H+VPL+ QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIQPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRA--TGHGFRHTMSTILHEQG  344
            Q++ ISG  +++FPG  + +K +SE T+N  +R +GY+ ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLE  390
            +   W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

376) int in NC_006155


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  269 bits (1006),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 274/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAG--KEKLLAVGVYPD  58
            MKLNARQVETAKPKDK+YK+ADGGGLYL V+++GS+YWR+KYR ++  KE  LA GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSES  118
            V+LA AR KRDEAKK++  G DP  ++++ +   +  ++ TFE+I+REW      RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYA  178
             R  ++  +E  +FP IG   I+++K  +L+A + K++  G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILT  238
            +  +  + NPA+D+A+A++  K  HYP L  + +PEFL+ LA+Y G ++ ++A+ L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GTRPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILK  286
              R++ELR A W EFDFD++LW +PA R            MKM+  H+VPL+ QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIQPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRA--TGHGFRHTMSTILHEQG  344
            Q++ ISG  +++FPG  + +K +SE T+N  +R +GY+ ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLE  390
            +   W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

377) YPTS_3293 in NC_010634


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  269 bits (1006),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 274/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAG--KEKLLAVGVYPD  58
            MKLNARQVETAKPKDK+YK+ADGGGLYL V+++GS+YWR+KYR ++  KE  LA GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSES  118
            V+LA AR KRDEAKK++  G DP  ++++ +   +  ++ TFE+I+REW      RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYA  178
             R  ++  +E  +FP IG   I+++K  +L+A + K++  G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILT  238
            +  +  + NPA+D+A+A++  K  HYP L  + +PEFL+ LA+Y G ++ ++A+ L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GTRPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILK  286
              R++ELR A W EFDFD++LW +PA R            MKM+  H+VPL+ QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIQPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRA--TGHGFRHTMSTILHEQG  344
            Q++ ISG  +++FPG  + +K +SE T+N  +R +GY+ ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLE  390
            +   W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

378) YPK_0925 in NC_010465


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  269 bits (1006),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 274/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAG--KEKLLAVGVYPD  58
            MKLNARQVETAKPKDK+YK+ADGGGLYL V+++GS+YWR+KYR ++  KE  LA GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSES  118
            V+LA AR KRDEAKK++  G DP  ++++ +   +  ++ TFE+I+REW      RWSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYA  178
             R  ++  +E  +FP IG   I+++K  +L+A + K++  G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILT  238
            +  +  + NPA+D+A+A++  K  HYP L  + +PEFL+ LA+Y G ++ ++A+ L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GTRPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILK  286
              R++ELR A W EFDFD++LW +PA R            MKM+  H+VPL+ QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIQPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRA--TGHGFRHTMSTILHEQG  344
            Q++ ISG  +++FPG  + +K +SE T+N  +R +GY+ ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLE  390
            +   W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

379) intB in NC_009348


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  268 bits (1002),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 188/419 (45%), Positives = 289/419 (69%), Gaps = 25/419 (5%)

Query  6    ITARQAKWSGKPNGD--KLADEKGLFLLVN-KSGKYWKLKYRHGG--KEKKLALGVYPEV  60
            + ARQ   ++KP++   K+AD  GL+L V+ K++KYW++KYR+ +  KE +LA+GV P V
Sbjct  3    LNARQVE-TAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTV  61

Query  61   SLrearakrdearrVIAEGIDPGLVRKQSKVASRLVSENSLEVLAREWHQSQFALWSPGH  120
            +L +ARAKRDEA++++ +GIDP   +K+++  +   +  ++E +AREWH S+   WS +H
Sbjct  62   TLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASN-KRWSEDH  118

Query  121  ATRVIESLEVDVFPDLGLVPITELTAPMILEALRKVEKRGATETAGRILQRVSAIMRYAI  180
             +RV+  LE+ +FP++G   I +L ++ +L +++KV+  G  + A R+ QRV+AIMRYA+
Sbjct  119  RSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAV  178

Query  181  QTGRASYNPAQDLRGALKATKQEHRPALPRSELPEFFRRLEAEPLNPATRLALHLLMLTM  240
            Q +    NPA D+ GAL +TK  H PALP S +PEF+ RL A      TR+A++L +LT 
Sbjct  179  QNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTF  238

Query  241  TRPGEVRFARWDEFDMERAEWRIPAAR------------MKMRTEHLVPLSRQALAVLDE  288
             R++E+RFARWDEFD +++ WR+PA R            MKM+ EH+VPLSRQA+ +L++
Sbjct  239  VRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQ  298

Query  289  LHQLTGHCELLFPSERKLTNPMSENTLSYAMGRMGY--KGIATPHGFRALASTTLNEEGF  346
            L Q++G+ ELLFP+++  T+ MSENT++ A+  MGY  K     HGFR++A  +L E G+
Sbjct  299  LKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGL  358

Query  347  -DPDVIERQLAHAERNKVRAAY-HRAEYLDDRRKLLQWLADFYDSQRGSNVLPVNFNRV  403
               D IERQL+H+ERN+VRAAY H +E LD+RR ++QW AD+ D  +  ++ P ++ RV
Sbjct  359  WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417

380) ECH74115_5032 in NC_011353


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  268 bits (1003),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 173/410 (43%), Positives = 264/410 (65%), Gaps = 27/410 (6%)

Query  25   MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAG--KEKMLSIGVYPD  82
            M L   +V TAKPK++ YK+ADGGG+YL ++A+GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  83   VTLADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLR  142
            VTLA+AR KR EA+K+L  G DP   +KE +   + S   TFE++AREWH ++  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  143  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  202
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  203  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLT  262
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL+ LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  263  GVRTQELRFAHWEDIDFEAKLWEIPAE------------VMKMKRPHIVPPSEQVIALFK  310
             VR+ ELRFA+W+++DF+  LW +PA              MKMK  HIVP S Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  311  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  368
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  369  FNSAW----IEMQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYIDSL  413
            +   W    IE QL+H ++N++R++Y H ++ LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

381) intL in NC_013941


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  268 bits (1003),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 173/410 (43%), Positives = 264/410 (65%), Gaps = 27/410 (6%)

Query  25   MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAG--KEKMLSIGVYPD  82
            M L   +V TAKPK++ YK+ADGGG+YL ++A+GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  83   VTLADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLR  142
            VTLA+AR KR EA+K+L  G DP   +KE +   + S   TFE++AREWH ++  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  143  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  202
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  203  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLT  262
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL+ LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  263  GVRTQELRFAHWEDIDFEAKLWEIPAE------------VMKMKRPHIVPPSEQVIALFK  310
             VR+ ELRFA+W+++DF+  LW +PA              MKMK  HIVP S Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  311  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG  368
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  369  FNSAW----IEMQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYIDSL  413
            +   W    IE QL+H ++N++R++Y H ++ LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

382) Rpic12D_3122 in NC_012856


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  268 bits (1002),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 168/406 (42%), Positives = 268/406 (67%), Gaps = 22/406 (5%)

Query  1    MSLTDIAIRTAKPTDKPYKLADGGGLYVEVYPTGGKLWRLKYR--FGGKEKRLSFGAYPV  58
            M L    + TAKP DK YK+ADGGGLY+EV + G+K WR+KYR   + KE RL+FG  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLKDARERRDNAKRLLAGGIDPSIERKMQKAATVERAANSFETVGREWFARYSPTWAEG  118
            V+L +AR +RD+AK+LL  GIDP  E+K   A + + +A +FET++REW A  +  W+E+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQK--EAQAENSGAYTFETIAREWHAS-NKRWSED  117

Query  119  HATKIIRRLEADIFPWLGGRPIAEITAPEVLTVLRRIEARGALDTAHRAHQNCGQIFRYA  178
            H ++++R LE  IFP +G+  I ++ ++++L+ +++++A G  D A+R +Q    I RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VATGRAIRDPSGDLRGALPPAKHENFASITDPVKVAELLRAIDAFRGTLVVRCALLLAPM  238
            V  +    +P++D+ GAL+ +K  +++++  + + +E+L  + A+RG ++ R A+ L+ +
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSS-RFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  239  VFVRPGELRKAEWADFDLDAGEWR--------------YLVTKTKTAHLVPLATQAVAIL  284
             FVR++ELR A W +FD+D + WR              Y   K K  H+VPL+ QA+ +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  285  RELHALTGHGRFVFPG-RDPKKPMSDAAVNAALRRMGYDTRTEITGHGFRAMARTILHEE  343
             +L  ++G+  ++FPG +D+ K MS+ +VN+ALR MGYDT+TE+ GHGFR+MAR  L E 
Sbjct  297  EQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGES  356

Query  344  LNYKPEIIEHQLAHSVPDALGTAY-NRTKFVKERRVMMQAWADYLD  388
                 + IE+QL+HS  + + +AY + +  + ERR+M+Q WADYLD
Sbjct  357  GLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

383) MYA_1732 in NC_017920


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  267 bits (997),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 176/404 (44%), Positives = 268/404 (67%), Gaps = 22/404 (5%)

Query  1    MPLTDVAVRAAKPREKSYKLADGQGMYLEIMPNGSKYWRLKYR--IDGKEKRMALRVYPA  58
            M L    V +AKP++K+YK+ADG G+YLE+ ++GSKYWR+KYR   D KE R+A+ V P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLLAARKARDEIKDQLRAGLDPSHEKKRVKAQRSLDRENSFEPIAREWHQQKKGAWSER  118
            VTL  AR  RDE K  L  G+DP  E+K  +A+ S     +FE IAREWH  +K  WSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS--GAYTFETIAREWHASNK-RWSED  117

Query  119  HADRIMKLLERELFPAIGARPIAEIMAPELLAVIRKIEARDAIELAHKTIQATSQIFRYA  178
            H  R+++ LE  +FP IG+  I ++ +++LLA I+K++A +  ++A++  Q  + I RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IATGRAERDSAPDLRGALKPRFVVHMRRVSEAELPELMRQISAYDGDFQTRLALQFMALT  238
            +  +  + ++A+D+ GAL      H   ++ + +PE++ +++AY G   TR+A+++  LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  FVRTSELRFAEWTEID-EKKEWRIPPEK------------MKMRTPHIVPLSTQALEVIA  285
            FVR+SELRFA W E+D +K  WR+P+ +            MKM+  HIVPLS QA+ ++ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  286  KLPELNGHSQFLFPSRSSSKKPMSENTILYALYRMGYHSR--MTGHGFRGLASTILNEHS  343
            +L +++G+ ++LFP+   + K MSENT+  AL  MGY+++  + GHGFR +A   L E +
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  344  F-NRDWIERQLAHSERDGVRAAYNHA-EYLPERRKMMQWWSNYL  385
            + + D IERQL+HSER+ VRAAY H+ E L ERR M+QWW++YL
Sbjct  358  LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYL  401

384) int in NC_014228


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  267 bits (1000),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 173/411 (43%), Positives = 264/411 (65%), Gaps = 27/411 (6%)

Query  1    MKLTARQVDTAKPKEKPYKLADGGGLYLLVNPNGARYWRLKYRIAG--KEKLLALGVYPD  58
            MKL ARQV+TAKPK+K YK+ADGGGLYL V+++G++YWR+KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLAEARTKRNEARRTLSDGNDPIeekkaekaakaFAVSNSFESIAIEWHEHKRPNWSKG  118
            ++LA+AR+KR+EA++ L +G DP  E+K  +A +  + + +FE+IA EWH  ++  WS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASNK-RWSED  117

Query  119  YAEDILEYLKKDIFPYIGKRAVTEIKPAEMLAVLRKMEQRGVLDKLKKTRQACRQIFTYA  178
                +L YL   IFP IG   + ++K +++LA ++K++  G  D  ++ +Q    I  YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VITGRAEFNPVTDLASALKTPKQKHFPHLLADQMNEFLIALAGYSGSEVTQSATRLLMLT  238
            V  +  + NP +D+A+AL T K +H+P L + +  EFL  LA+Y G  +T+ A  L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTIELRESEWTEFDFDKDIWQIPAER------------MKMRRPHIVPLSNQVKAILI  286
             VR+ ELR + W EFDFDK +W++PA R            MKM+  HIVPLS Q   +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  KLHSITGRGKYVFPGRNDAGKPMSEAAINQVIKRIGYDGRA--TGHGFRHTMSTILHEQG  344
            +L  I+G    +FPG +DA K MSE ++N  ++ +GYD ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  YNTAW----IETQLAHVDKNSIRGTYNH-AQYLEGRREMLQWYADHMEMLE  390
                W    IE QL+H ++N++R++Y H ++ L+ RR M+QW AD +++++
Sbjct  358  ---LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

385) ECP_3765 in NC_008253


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  266 bits (995),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 172/410 (42%), Positives = 263/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTDIKVKTVKPKDKPYKLADGSGMYLLINTNGSKYWRMKYRFAG--KEKMLSLGVYPD  58
            M L   +V T KPKDK YK+ADG+G+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADARQKRSEARKILAAGGDPGEVKKEEKIALQMSLKNTFEAIAREWHRSKADRWSLR  118
            VTLA+AR KR EA+K+L  G DP   +KE +   + S   TFE+IAREWH +   RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWH-ASNKRWSED  117

Query  119  YRDEIIDTFEKDIFPYLGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP +G   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFAHWEDINLEKKLWEIPAE------------VMKMKRPHIVPLSEQVITLFK  286
             VR+ ELRFA+W++++++K LW +PA              MKMK  HIVPLS Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHYPLVFIGRNDPRKPISKESINQVIELIGY--KGRLTGHGFRHTMSTILHEQG  344
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N++R++Y H ++ LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

386) Dda3937_00938 in NC_014500


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  265 bits (991),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 171/411 (42%), Positives = 272/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQVDTAKPKDKPYKLSDGGGLYLLVNPNGSRYWRLKYR--VDGKEKLLALGVYPA  58
            MKLNARQV+TAKPKDK YK++DGGGLYL V+++GS+YWR+KYR   D KE  LA+GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLAQARGKRDEAKRGIAGGIDPNVARREEKIAREAQIKNTFQDIALEWHASKIKKWSAG  118
            ++LAQAR+KRDEAK+ +  GIDP+  ++E +    +    TF+ IA EWHAS+ K+WS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YASDIMEAFNKDVFPYIGNKPIAQIKPLELLNVLRRMESRGATEKAKKVRQRCGEVFRYA  178
              S ++  ++  +FP IG+  I Q+K  +LL  ++++++ G  + A++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNPAPDLTSAMQGHESSHYPFLNAQELPEFFHALSEYTGSKlvllaarllilT  238
            +  +  + NPA+D+++A+    + HYP L +  +PEF+  L+ Y G  +  +A  L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTGELRAANWQEIDTENARWEIPAER------------MKMRRPHCVPLSRQAIAILD  286
             VR++ELR A W+E+D +++ W +PA R            MKM+  H VPLSRQA+ +L+
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  EIREMTGRYPLVFPGRNDPRNTMSEASINQVFKRIGYAGR--VTGHGFRHTMSTILHEQG  344
            ++++++G   L+FPG +D+ + MSE ++N  ++ +GY  +  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  YNTAW----IETQLAHVDKNAIRGTYNHA-QYLDGRREMLQWYADYMESLE  390
                W    IE QL+H ++N +R++Y H+ + LD RR M+QW ADY++ ++
Sbjct  358  ---LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

387) ETEC_0316 in NC_017633


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  264 bits (985),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 172/411 (42%), Positives = 272/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQIDTAKPKEKAYKLADGGGLYLLVKPNGGKYWRLKYRVAG--KEKLLALGVYPE  58
            MKLNARQ++TAKPK+K+YK+ADGGGLYL V ++G+KYWR+KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLadarakredakrGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAG  118
            VTLA+ARAKR++AK+ +  GIDP   ++E +         TF  IA EWH+S+ K+WS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YASDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYA  178
              S +L  ++  +FP IG   I ++K  +LL  ++++++ G  + A++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNPAPDLTSAMQGHESNHYPFLTAKELPDFFKALSSYSGSALVVMAARLLIIT  238
            +  +  + NPA+D+++A+    + HYP L +  +P+F+  L++Y G  +  +A  L ++T
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GLRTGELRGALWDEIDFNKALWEIPASR------------MKMRRPHIVPLSEQALSLIG  286
             +R++ELR A WDE+DF+K+LW +PA R            MKM+  HIVPLS QA+ L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  KIREITGNYPLMFPGRNDPRKTMSEASINQVFKRIGYAGR--VTGHGFRHTMSTILHEQG  344
            ++++I+G+  L+FPG +D+ K MSE ++N  ++ +GY  +  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  YNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLE  390
                W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

388) EC55989_0268 in NC_011748


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  264 bits (987),  Expect = 7e-72, Method: Compositional matrix adjust.
 Identities = 174/426 (41%), Positives = 279/426 (66%), Gaps = 29/426 (6%)

Query  1    MKLNARQIDTAKPKEKAYKLADGGGLYLLVKPSGGKYWRFKYRVAG--KEKLLALGVYPE  58
            MKLNARQ++TAKPK+K+YK+ADGGGLYL V + G+KYWR KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADarakreeakrGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAG  118
            VTLA+ARAKR+EAK+ +  GIDP   ++E +         TF  IA EWH+S+ K+WS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YASDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYA  178
              S +L  ++  +FP IG   I ++K  +LL  ++++++ G  + A++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNPAPDLTSAMQGHESNHYPFLTAKELPDFFKALSSYSGSALVVMAARLLIIT  238
            +  +  + NPA+D+++A+    + HYP L +  +P+F+  L++Y G  +  +A  L ++T
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GLRTGELRGALWDEIDLNKAIWEIPASR------------MKMRRPHVVPLSKQALSLIG  286
             +R++ELR A WDE+D++K++W +PA R            MKM+  H+VPLS+QA+ L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIKELTGNYPLMFPGRNDPRKTMSEASINQVFKRIGYNGK--VTGHGFRHTMSTILHEQG  344
            Q+K+++G+  L+FPG +D+ K MSE ++N  ++ +GY+ K  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  YNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLEHGGNVVHGE  399
                W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++   ++   E
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQY-EHITPYE  413

Query  400  FGK-CG  404
            +++ C 
Sbjct  414  YARVCN  419

389) O3K_20180 in NC_018658


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  264 bits (987),  Expect = 7e-72, Method: Compositional matrix adjust.
 Identities = 174/426 (41%), Positives = 279/426 (66%), Gaps = 29/426 (6%)

Query  1    MKLNARQIDTAKPKEKAYKLADGGGLYLLVKPSGGKYWRFKYRVAG--KEKLLALGVYPE  58
            MKLNARQ++TAKPK+K+YK+ADGGGLYL V + G+KYWR KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADarakreeakrGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAG  118
            VTLA+ARAKR+EAK+ +  GIDP   ++E +         TF  IA EWH+S+ K+WS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YASDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYA  178
              S +L  ++  +FP IG   I ++K  +LL  ++++++ G  + A++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNPAPDLTSAMQGHESNHYPFLTAKELPDFFKALSSYSGSALVVMAARLLIIT  238
            +  +  + NPA+D+++A+    + HYP L +  +P+F+  L++Y G  +  +A  L ++T
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GLRTGELRGALWDEIDLNKAIWEIPASR------------MKMRRPHVVPLSKQALSLIG  286
             +R++ELR A WDE+D++K++W +PA R            MKM+  H+VPLS+QA+ L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIKELTGNYPLMFPGRNDPRKTMSEASINQVFKRIGYNGK--VTGHGFRHTMSTILHEQG  344
            Q+K+++G+  L+FPG +D+ K MSE ++N  ++ +GY+ K  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  YNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLEHGGNVVHGE  399
                W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++   ++   E
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQY-EHITPYE  413

Query  400  FGK-CG  404
            +++ C 
Sbjct  414  YARVCN  419

390) AHML_14825 in NC_021290


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  263 bits (984),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 186/419 (45%), Positives = 278/419 (67%), Gaps = 22/419 (5%)

Query  1    MPLSDTAARQAKFTGKQQKLSDEKGLFLLITSSG-KYWRLKFR--FGGKEKVLALGVYPE  57
            M L+      AK  +K  K++D  GL+L +++ G KYWR+K+R   + KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  58   VSlkearvkreearrllaDGIDPSLARKQSKVASRLASENSFEVIAREWHQGQLARWSPG  117
            V+L +AR KR+EA++LL +GIDP   +K+++  +  ++  +FE IAREWH ++  RWS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASN-KRWSED  117

Query  118  HAQRVIESLEADAFPELGLVPVAELTAPIMLDALRKIEARGATETAGRVLQRISSVMRYA  177
            H  RV+  LE   FP++G   + +L ++ +L +++K++A G  + A R+ QR++++MRYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  178  IQTGRVSYNPAQDLKGALRATKQEHRPALPRADLPEFYRRLAAEPLNPATRLAIHLLMLT  237
            +Q + +  NPA D+ GAL +TK  H PALP + +PEF  RLAA      TR+A++L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  238  MTRPGEVRFARWDEFDMARAEWRIPAER------------MKMRAPHIVPLSRQALAVLE  285
              R++E+RFARWDEFD  ++ WR+PA R            MKM+  HIVPLSRQA+ +LE
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  286  ELRLISGHCELLFPSERKLTDPMSENTLSYAMGRMGY--KGIATPHGFRALASTILNEEG  343
            +L+ ISG+ ELLFP+++  T  MSENT++ A+  MGY  K     HGFR++A   L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  344  F-DPDVIERQLAHAERNKVRAAY-HRAEYLDDRRKLLQWLADFYESQQGGNIRPMNFDR  400
            +   D IERQL+H+ERN+VRAAY H +E LD+RR ++QW AD+ +  Q  +I P ++ R
Sbjct  358  LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYAR  416

391) ECABU_c03450 in NC_017631


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  262 bits (980),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 171/411 (42%), Positives = 272/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQIDTAKPKEKAYKLADGGGLYLLVKPNGGKYWRLKYRVAG--KEKLLALGVYPE  58
            MKLNARQ++TAKPK+K+YK+ADGGGLYL V ++G+KYWR+KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLadarakredakrGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAG  118
            VTLA+ARAKR++AK+ +  GIDP   ++E +         TF  IA EWH+S+ K+WS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YASDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYA  178
              S +L  ++  +FP IG   I ++K  +LL  ++++++ G  + A++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNPAPDLTSAMQGHESNHYPFLTTKELPDFFKALSSYSGSALVVMAARLLIIT  238
            +  +  + NPA+D+++A+    + HYP L +  +P+F+  L++Y G  +  +A  L ++T
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GLRTGELRGALWDEIDFNKAIWEIPASR------------MKMRRPHIVPLSEQALSLIG  286
             +R++ELR A WDE+DF+K++W +PA R            MKM+  HIVPLS QA+ L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  KIREITGNYPLMFPGRNDPRKTMSEASINQVFKRIGYAGR--VTGHGFRHTMSTILHEQG  344
            ++++I+G+  L+FPG +D+ K MSE ++N  ++ +GY  +  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  YNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDSLE  390
                W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

392) SYN_01916 in NC_007759


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  261 bits (976),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 268/407 (66%), Gaps = 23/407 (5%)

Query  16   IPLTDMKVQKARPQDKPIALFDGGGLYLLITPSGGKLWRFKYR--FDKKEKKLALGSYPE  73
            + L   +V+ A+P+DK   + DGGGLYL +++ G+K WR KYR   DKKE +LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  74   ISLQDARRKREDARRLLANNIDPDSIRKAQKQAKTEETE--TFEVIGREWHTKFTPTWTP  131
            ++L +AR KR++A++LL + IDP   +  QK+A++E++   TFE I+REWH+     W+ 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDP---KTEQKEAQAENSGAYTFETIAREWHAS-NKRWSE  116

Query  132  GHAVTIMSRLERDLFPWIGKRPINQIKAPELLAVLRRVESRGALESAHRIRTIAGQVFRY  191
            +H   ++  LE  +FP IG   I Q+K+++LLA +++V++ G  + A+R++     + RY
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  192  AVATGRAERDPAADLKGALPQPRERHHAALTEPKEVAPLLRALDGYQGHFVVKCALRLAP  251
            AV  +  + +PA+D+ GAL+  + RH +AL  ++  + +L  L +Y+G+ + + A+ L+ 
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSR-FPEFLARLAAYRGRVMTRIAVELSL  235

Query  252  MFFTRPGELRNAEWSEIDLDEAVWNIPAHK------------MKMKQAHIVPLCRQAVEI  299
            + F R++ELR A W E+D+D ++W +PA +            MKMK+ HIVPL RQA+ +
Sbjct  236  LTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVL  295

Query  300  LTELKEVTGPSRYVFPSGRSFARPMSNNAVNAALRRMGYD-RETMTGHGFRAMARTILDE  358
            L +LK+++G    +FP+++  ++ MS+N+VN+ALR MGYD +  + GHGFR+MAR  L+E
Sbjct  296  LEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGE  355

Query  359  VLHVRPDYIEHQLAHAVRDPNGRAYNRTA-HLEERRKMMQIWADYLD  404
                  D IE+QL+H+ R+    AY +T+ HL+ERR M+Q WADYLD
Sbjct  356  SGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

393) SeSA_A0666 in NC_011094


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  260 bits (973),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 176/409 (44%), Positives = 256/409 (63%), Gaps = 29/409 (7%)

Query  1    MKLTARQISTAKPTEKPYKLSDGGGLYLLVNPNGSRYWRMKYRYAG--KEKLLSIGVYPD  58
            MKL ARQ+ TAKP +K YK++DGGGLYL V+++GS+YWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLAEARDKRTQAKRILAAGDDP-SEVKQAEREAKNLAVNNSFELLALEWHEHKKPNWSS  117
            VTLA+AR KR +AK++L  G DP +E K+A+ E    +   +FE +A EWH  +K  WS 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN---SGAYTFETIAREWHASNK-RWSE  116

Query  118  GYADDILEYLRKDIFPYIGKKAITDIKPMTMLSVLKKMEDRGVLDKLKKTRQACRQIFTY  177
            +    +L YL   IFP IG   I ++K   +L+ +KK++  G  D  ++ +Q    I  Y
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  178  AIITGRAEFNPVTDLAGALKTPKQQHFPHLMPTQIGPFIHAVNTYSGSKVTRIATLLLMY  237
            A+  +  + NP +D+AGAL T K +H+P L ++++  F+  + +Y G  +TRIA  L + 
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  238  TSVRTIELRASEWTEFDLDNDLWQIPKER------------MKMRRPHLVPLSRQVKSHL  285
            T VR+ ELR + W EFD+D+ LW++P  R            MKM+  H+VPLSRQ    L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  286  LELKKITGWGKYVFPGRNDAHKPMSEASINQVIKRIGFAGK--VTGHGFRHTMSTILHEK  343
             +LK+I+G    +FPG +DA K MSE ++N  ++ +G+  K  V GHGFR      L E 
Sbjct  297  EQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGES  356

Query  344  GFNSAW----IEAQLAHADRNTIRGTYNH-AQYLDGRREMLQWYADYLD  387
            G+   W    IE QL+H++RN +R++Y H ++ LD RR M+QW ADYLD
Sbjct  357  GL---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

394) intS in NC_016514


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  260 bits (973),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 170/410 (42%), Positives = 266/410 (65%), Gaps = 29/410 (7%)

Query  24   MMLNARKVEAAKGKEKSYKLSDGGGLYLQVEPNGSRYWRMKYRFAG--KEKRLSFGVYPT  81
            M LNAR+VE+AK K+K+YK++DGGGLYL+V ++GS+YWRMKYR ++  KE RL+FGV PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  82   VTLADARQKREDAKKLLAAGEDPGEVKKAKKQALNAAIETLNPFRDVALEWHKMKSPKWS  141
            VTLA+AR KR++AKKLL  G DP    K+ ++  +A       F  +A EWH   + +WS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDP----KTEQKEAQAENSGAYTFETIAREWH-ASNKRWS  115

Query  142  EGYASDIIEAFEKDIFPHIGHRPIADIQPLELLGVLRLIEARGAMEKAKKVRQRCGEVFR  201
            E+  S ++  +E  IFPHIG   I +++  +LL+ ++ ++A G  + A++++QR   + R
Sbjct  116  EDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMR  175

Query  202  YAIVTGRAIYNPAPDLASAMQGHEAVHYPFLKAKELPEFFTALNAYSGSPIVllgaqlli  261
            YA+  +    NPA+D+A+A+    A HYP L +  +PEF++ L AY G  +  ++ +L +
Sbjct  176  YAVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSL  235

Query  262  ltglRTGELRAGEWSEVDFNNAVWEIPKER------------MKMRRSHIVPLPKQALSH  309
            LT +R++ELR + W E DF++++W +P  R            MKM+  HIVPL++QA+  
Sbjct  236  LTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVL  295

Query  310  LKSLKDLTGNYPLMFPGRNDPSKPMSEASINQVFKRIGYAGR--VTGHGFRHTMSTILHE  367
            L  LK+++G+  L+FPG +D++K MSE ++N  ++ +GY  +  V GHGFR      L E
Sbjct  296  LEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGE  355

Query  368  KGFNSAW----IETQLAHLDKNSIRGIYNHA-QYLEGRREMMQWYANYLS  412
             G+   W    IE QL+H ++N++R+ Y H+ + L+ RR M+QW A+YL 
Sbjct  356  SGL---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

395) Reut_A2365 in NC_007347


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  260 bits (971),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 166/413 (41%), Positives = 284/413 (69%), Gaps = 22/413 (5%)

Query  8    LTDTKIRNAKPRERSYKLFDGGGLYLEVMTDGRKLWRFKYVRPSGS-ESRLGFGVYPAVS  66
            L   ++  AKP++++YK+ DGGGLYLEV + G K WR KY RPS+  E RL+FGV P+V+
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  67   LAQARTQRETARGIVADGRDPGAVKQEERRAARIAAGNSFEAVARDWHNTQKSSWNDVYA  126
            LAQAR++R+ A+ ++ +G DP + ++E +     +++ +FE++AR+WH ++K  W++   
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASNKR-WSEDHR  119

Query  127  GKVLASLENDVFPVLGSTPIADIKAPAILDLLRKVEARGVRDTTKRILQRMRAVFQYGII  186
            ++VL  LE  +FP +GS+ I ++K++ +L  ++KV+A G +D ++R+ QR+ A+ +Y++ 
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  187  YGLCDRNPAADIDSAAALKSESVQHQARVSPLELPQLLRDIDAYEGDAVTRLALQFMTLT  246
             +  D NPA+D+  A+AL +   +H + +++  +P++L  + AY G  +TR+A+++  LT
Sbjct  180  NDYIDSNPASDM--AGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  247  FVRTTEMIQARWVEIDEAKAEWRIPADR------------MKMRDPHVVPLSTQALAVLA  294
            FVR++E+  ARW E+D  K+ WR+PA R            MKM++ H+VPLS QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  295  ELRAINGHRDLVFYSPRGKSGHISNNTMLYALYRMGYHSR--MTGHGFRGLASTALNELG  352
            +L+ I+G+++L+F + ++ +  +S+NT+  AL  MGY+++  + GHGFR +A  AL E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  353  FRP-DVIERQLAHVERNKVRAAYNH-AQYLPERRQMMQSWADHVHALRMPAVT  403
            +++ D IERQL+H ERN+VRAAY H ++ L ERR M+Q WAD ++ ++   +T
Sbjct  358  LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHIT  410

396) A11S_1005 in NC_020812


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  260 bits (970),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 180/410 (44%), Positives = 268/410 (66%), Gaps = 23/410 (5%)

Query  1    MPLSDVACRQAKPREKSYKMGDSGGLYLEITPKGSKLWRMKYRYGG--KEKRLALGQYPE  58
            M L+      AKP++K+YKM+D+GGLYLE+++KGSK WRMKYR  +  KE RLA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARDGRDKARKLLAEHNDPSLAKQEKKRLAQASAANTFEALALEWHEKNKGNWSPN  118
            V+LA+AR  RD A+KLL +  DP    ++K   A+ S+A TFE++A EWH  NK  WS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPK--TEQKEAQAENSGAYTFETIAREWHASNK-RWSED  117

Query  119  HASTVLRRLEQDLFPAIGNLPIKEITTPRLAIVIENIEKRGAYDIARRALQYSRAIFAYA  178
            H S VLR LE  +FP IG+  I+++ T++L   I +++  G  D+A+R  Q   AI  YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  QLRGKIDTNPADIKAKDFLAPIKQGHYAAMEAKDLPEFLSKLYSNEARLFISTQLALEMM  238
               + ID+NPA   A   L+  K  HY+A+ +  +PEFL++L +  +R  + T++A+E+ 
Sbjct  178  VQNDYIDSNPASDMAGA-LSTTKARHYPALPSSRFPEFLARLAAYRGR--VMTRIAVELS  234

Query  239  LLTFVRTSELIKARWDEFDFEKRQWIIPAER------------MKMNRDHIVPLSKQVLR  286
            LLTFVR+SEL  ARWDEFDF+K  W +PA R            MKM+ +HIVPLS+Q + 
Sbjct  235  LLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMV  294

Query  287  ILEQLKPISEHREFLFPGQRNPKTHMSNGAILMALKRMGYHGIH--TGHGFRALAMTTIM  344
            +LEQLK IS ++E+LFPG++++   MS+ ++  AL+ MGY+      GHGFR++A  ++ 
Sbjct  295  LLEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALG  354

Query  345  EELGYPHEVPDTQLAHAKGDSVRRAYDRTK-FLAQRKKMMQEWADYIENI  393
            E    +++  + QL+H+  ++VR AY +T   L +R+ M+Q WADY++ I
Sbjct  355  ESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

397) A3UG_04555 in NC_018079


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  258 bits (965),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 168/411 (41%), Positives = 272/411 (67%), Gaps = 27/411 (6%)

Query  1    MKLNARQVDAAKPKDNPYKLADGGGLYLLIKPNGGKYWRLKYRVAG--KEKLLALGVYPE  58
            MKLNARQV++AKPKD+ YK+ADGGGLYL + ++G+KYWR+KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADarakreeakrGIAGGIDPMEAKREEKIAREIQLNNTFKDIALEWHSSKLKKWSAG  118
            VTLA+ARAKR+EAK+ +  GIDP   ++E +         TF  IA EWH+S+ K+WS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YASDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKARKVRQRCGEVFRYA  178
              S +L  ++  +FP IG   I ++K  +LL  ++++++ G  + A++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNPAPDLTSAMQGHESNHFPFLTPKELPDFFNALSGYSGSELVVLAARLLIIT  238
            +  +  + NPA+D+++A+    + H+P L +  +P+F+  L++Y G  +  +A  L ++T
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GLRPGELRGAFWDEINISKAVWEIPASR------------MKMRRPHVVPLSRQALTLIG  286
             +R++ELR A WDE+++ K++W +PA R            MKM+  H+VPLSRQA+ L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIQELTGNYPLVFPGRNDPRKTMSEASINQVFKRIGYNGK--VTGHGFRHTMSTILHEQG  344
            Q+++++G+  L+FPG +D+ K MSE ++N  ++ +GY+ K  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  YNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMEALE  390
                W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY++ ++
Sbjct  358  ---LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

398) ESA_03025 in NC_009778


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  258 bits (964),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 173/410 (43%), Positives = 266/410 (65%), Gaps = 29/410 (7%)

Query  1    MMLNARKVEAAKGKEKSYKLSDGGGLYLQVEPNGSRYWRMKYRFGG--KEKRLSFGVYPT  58
            M LNAR+VE+AK K+K+YK++DGGGLYL+V ++GS+YWRMKYR  +  KE RL+FGV PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQKREEAKKLLATGDDPSEVkkakklaliaaTEIVNPFRDVALEWHKMKSPKWS  118
            V+LA+AR KR+EAKKLL  G DP     + +    A       F  +A EWH   + +WS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPK----TEQKEAQAENSGAYTFETIAREWH-ASNKRWS  115

Query  119  EGYASDILEAFDKDIFPHIGHRPIADIQPLELLEVLRLIEARGAMEKAKKVRQRCGEVFR  178
            E+  S +L  ++  IFPHIG   I +++  +LL  ++ ++A G  + A++++QR   + R
Sbjct  116  EDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMR  175

Query  179  YAIVTGRAVYNPAPDLASAMQGHEAVHYPFLKASELPEFFTVLNAYTGSPIVllgahlli  238
            YA+  +    NPA+D+A+A+    A HYP L +S +PEF++ L AY G  +  ++ +L +
Sbjct  176  YAVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSL  235

Query  239  ltglRTGELRAAEWREVDFDNAIWEIPKER------------MKMRRAHIVPLSKQALVY  286
            LT +R++ELR A W E DFD+++W +P  R            MKM+  HIVPLS+QA+V 
Sbjct  236  LTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVL  295

Query  287  LKRLKELTGNYPLMFPGRNDPSKFMSEASINQVFKRIGYGGR--VTGHGFRHTMSTILHE  344
            L +LK+++G+  L+FPG +D++K MSE ++N  ++ +GY+ +  V GHGFR      L E
Sbjct  296  LEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGE  355

Query  345  KGFNSAW----IETQLAHLDKNSIRGIYNHA-QYLDGRREMMQWYGDFIN  389
             G+   W    IE QL+H ++N++R+ Y H+ + LD RR M+QW +D+++
Sbjct  356  SGL---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

399) ECL_01076 in NC_014121


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  257 bits (959),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 173/410 (43%), Positives = 268/410 (66%), Gaps = 29/410 (7%)

Query  1    MMLNARKVEAAKGKEKSYKLSDGGGLYLQVEPNGSRYWRMKYRFAG--KEKRLSFGVYPT  58
            M LNAR+VE+AK K+K+YK++DGGGLYL+V ++GS+YWRMKYR ++  KE RL+FGV PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQKREDAKKLLAAGEDPGEVkkakkhaltaatEILNPFREVALEWHKMKSPKWS  118
            V+LA+AR KR++AKKLL  G DP   +K  +   ++A      F  +A EWH   + +WS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGA----YTFETIAREWH-ASNKRWS  115

Query  119  EGYASDIIEAFEKDIFPHIGHRPIADIKPLELLEVLRLIEARGAMEKAKKVRQRCGEVFR  178
            E+  S ++  +E  IFPHIG   I ++K  +LL  ++ ++A G  + A++++QR   + R
Sbjct  116  EDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMR  175

Query  179  YAIVTGRAIYNPAPDLASAMQGHEAVHYPFLKVNELPEFFTALNAYSGSPIVllgahlli  238
            YA+  +    NPA+D+A+A+    A HYP L  + +PEF++ L AY G  +  ++ +L +
Sbjct  176  YAVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSL  235

Query  239  ltglRTGELRAAEWREVDFDNAVWEIPKER------------MKMRRTHIVPLSKQALVH  286
            LT +R++ELR A W E DFD+++W +P  R            MKM+  HIVPLS+QA+V 
Sbjct  236  LTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVL  295

Query  287  LGRLKELTGNYPLMFPGRNDPSKFMSEASINQVFKRIGYAGR--VTGHGFRHTMSTILHE  344
            L +LK+++G+  L+FPG +D++K MSE ++N  ++ +GY  +  V GHGFR      L E
Sbjct  296  LEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGE  355

Query  345  KGFNSAW----IETQLAHLDKNSIRGIYNHA-QYIEGRREMMQWYADFLE  389
             G+   W    IE QL+H ++N++R+ Y H+ + ++ RR M+QW AD+L+
Sbjct  356  SGL---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

400) SeSA_A0374 in NC_011094


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  256 bits (956),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 175/410 (43%), Positives = 267/410 (66%), Gaps = 29/410 (7%)

Query  1    MMLNARKVEAAKGKEKSYKLADGGGLYLQVEPNGSRYWRMKYRFAG--KEKRLSFGVYPA  58
            M LNAR+VE+AK K+K+YK+ADGGGLYL+V ++GS+YWRMKYR ++  KE RL+FGV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQKREDAKKLLAAGNDPGEVkkakklalTSATEIVNPFKEVALEWHKMKSPKWS  118
            V+LA+AR KR++AKKLL  G DP   +K  +   ++A      F  +A EWH   + +WS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGA----YTFETIAREWH-ASNKRWS  115

Query  119  KGYASDILEAFEKDIFPHIGQRPIADIKPLELLEVLRLIEARGAMEKAKKVRQRCGEVFR  178
             +  S +L  +E  IFPHIG   I ++K  +LL  ++ ++A G  + A++++QR   + R
Sbjct  116  EDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMR  175

Query  179  YAIVTGRAIYNPAPDLASAMQGHEAVHYPFLKATELPEFFTALNAYTGSPIVVLGAHLLI  238
            YA+  +    NPA+D+A+A+    A HYP L ++ +PEF++ L AY G  +  ++ +L +
Sbjct  176  YAVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSL  235

Query  239  LTGLRTGELRAAEWCEIDFDNALWEIPKER------------MKMRRAHLVPLSNQalal  286
            LT +R++ELR A W E+DFD++LW +P  R            MKM+  H+VPLS QA+ L
Sbjct  236  LTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVL  295

Query  287  letlkeltGNYPLMFPGRNDPSKSMSEASINQVFKRIGYAGR--VTGHGFRHTMSTILHE  344
            LE LK+++G+  L+FPG +D++K MSE ++N  ++ +GY  +  V GHGFR      L E
Sbjct  296  LEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGE  355

Query  345  KGFNSAW----IETQLAHLDKNSIRGIYNHA-QYLEGRREMMQWYANYLS  389
             G+   W    IE QL+H ++N++R+ Y H+ + L+ RR M+QW A+YL 
Sbjct  356  SGL---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

401) KN400_0440 in NC_017454


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  255 bits (953),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 172/414 (42%), Positives = 265/414 (65%), Gaps = 24/414 (5%)

Query  6    IPLSALKIDKAKPQEKEVKLYDGGGLFLLITPSGGKLWHLKYR--YGGKEKKLALGAYPL  63
            + L+A +++ AKP++K  K+ DGGGL+L +++ G+K W++KYR   + KE +LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  64   VSLEGARQRREDAKKLLANGVDPGEMKKVLKSAAKDKAANTFEVVAREWHHKFSSAGKWS  123
            V+L  AR +R++AKKLL +G+DP   +K   + A + +A TFE +AREWH   +S  +WS
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQK--EAQAENSGAYTFETIAREWH---ASNKRWS  115

Query  124  PTHAADILHRLEKDIFPPLGARPISEIKPLDLLRVLERIASRGALDTAHRLRHHCGMIFR  183
              H + +L+ LE  IFP +G+  I ++K  +LL  + ++ + G  D A+RL+++   I R
Sbjct  116  EDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMR  175

Query  184  YAVVTERAERDVAADLRGALPPVKNGHHAAPTTPQSLLP-LLRAIDVYEGSYIVKCALQL  242
            YAV  +  + + A+D+ GAL+  K  H   P+ P S +P +L  +  Y G  + + A++L
Sbjct  176  YAVQNDYIDSNPASDMAGALSTTKARHY--PALPSSRFPEFLARLAAYRGRVMTRIAVEL  233

Query  243  LPLFFCRPGELRAAEWTEFDFDKAIWEIPATR------------MKMKQPHIVPLSKQAI  290
              L F R++ELR A W EFDFDK++W +PA R            MKMK+ HIVPLS+QA+
Sbjct  234  SLLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAM  293

Query  291  AILESLQSLTGSGKYLFPCQRSTQRCMSDNAYNAALRRMGF-TKDEATAHGFRASARTIL  349
             +LE L+ ++G    LFP ++ + + MS+N+ N+ALR MG+ TK E  +HGFR+ AR  L
Sbjct  294  VLLEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGAL  353

Query  350  DEVLRIPVVLIEHQLSHSVRDPLGRAYNRTS-HLDERKKMMQQWADYLDGLKCG  402
            +E    +   IE+QLSHS R+ +  AY +TS HLDER+ M+Q WADYLD ++  
Sbjct  354  GESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYE  407

402) EAE_06555 in NC_015663


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  254 bits (947),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 177/407 (44%), Positives = 262/407 (65%), Gaps = 27/407 (6%)

Query  1    MKLTARQVDTAKPKEKPYKLSDGGGLYLEVATSGSRYWRLKYRYAG--KEKRLAFGVYPE  58
            MKL ARQV+TAKPK+K YK++DGGGLYLEV++ GS+YWR+KYR ++  KE RLAFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLaeardkreaakkVLAAGNDPGEVKKAEKIAQKLGFENTFEAIAREWHQVRADRWSLR  118
            V+LA+AR KR+ AKK+L  G DP   +K  +  +  ++  TFE+IAREWH     RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWH-ASNKRWSED  117

Query  119  YREEIIDTFEKDVFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHA  178
             R  ++  +E  +FP IG   I ++K  +LL  +++++  G  +  ++++QR   + R A
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLKDLAGYTGSIITKTATQIIMLT  238
            +  +  + NPA+D+A AL+T K  H+P L +  +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDINFEKRLWEIPAE------------VMKMKRPHIVPMSDQVVALFE  286
             VR+ ELRFARW++++F+K LW +PA              MKMK  HIVP+S Q + L+E
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  SLKPITGLYPLVFIGRNDRTKPISKESINQVIELLGY--KGRVTGHGFRHTMSTILHEEG  344
             LK I+G   L+F G +D TK +S +++N  +  +GY  K  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FDSAW----IETQLAHVDKNAIRGAYNH-AQYLDGRKEMMQWYADYI  386
            +   W    IE QL+H ++N +R+AY H ++ LD R+ M+QW ADY+
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYL  401

403) Selin_1494 in NC_014836


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  254 bits (947),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 167/403 (42%), Positives = 265/403 (66%), Gaps = 20/403 (4%)

Query  8    LTVKQIDSAKPKDKQYRLYDGGGLVFTIKPNGGKYWIMRYR--YEKKSHELHLGTYPEVP  65
            L  +Q+++AKPKDK Y++ DGGGL + + ++G+KYW M+YR   +KK + L +G  P V 
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  66   LSKAREFREEVRVQVAAGIDPKRYREEAENQLLRQKEGSFESVARSWCEIQKPRWTERHG  125
            L++AR  R+E +  +  GIDPK   E+ E Q       +FE++AR W   +K RW+E H 
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKT--EQKEAQAENSGAYTFETIAREWHASNK-RWSEDHR  119

Query  126  SDVINSLETNVFPYIGSRPIYELKPRELLDVVKVIDDRGASEIARRVLQRISAIYDYAFA  185
            S V+  LE  +FP IGS  I +LK  +LL  +K +D  G  ++A+R+ QR++AI  YA  
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  186  HGLVELNPTAGLVKGLKPQKKQNFAALSAEEVPELVRAIEGYHGHPItklalklclltaS  245
            ++ ++ NP++++  +L   K ++++AL++   PE++  + +Y+G+ +T++A+ L LLT  
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV  239

Query  246  RTNEIRFASWQEFDLDNTLWCIPAER------------MKMRRDHRVPLSRQAVAVVEEL  293
            R++E+RFA W+EFD+D++LW +PA R            MKM+ +H VPLSRQA+ ++E+L
Sbjct  240  RSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQL  299

Query  294  IQYSGKNKYLFPNQNKPHTPITENTMLYALYRMGFHKRSTV--HGFRTLFSTIANEKSDF  351
             Q SG +  LFP ++ +   ++ENT+  AL  MG++ ++ V  HGFRT+      E +  
Sbjct  300  KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW  359

Query  352  SADAVERQLAHQEQNRIRAAY-HRADYLDERRELMQWWADYLD  393
            S DA+ERQL+H E+N +RAAY H ++ LDERR ++QWWADYLD
Sbjct  360  SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

404) W5S_3565 in NC_017845


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  252 bits (940),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 171/413 (42%), Positives = 270/413 (66%), Gaps = 27/413 (6%)

Query  1    MKLNARQVDTAKPKDKPYKLADGGGLYLLVKPNGARYWRLKYRVAG--KEKLLALGVYPD  58
            MKLNARQV+TAKPKDK YK+ADGGGLYL V ++G++YWR+KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLadarakrdeakrGIAGGIDPSEAKRKEKAILEAQVNNTFQDIATEWHSSKLKKWSEG  118
            VTLA+ARAKRDEAK+ +  GIDP   ++  +A  E     TF+ IA EWH+S+ K+WSE+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  YASDIMEAFNKDVFPYIGKKPIAEIKPLELLNVLRRMEGRGATEKAKKVRQRCGEVFRYA  178
              S ++  ++  +FP IG   I ++K  +LL  ++++++ G  + A++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNPAPDLTSAMQGHESSHYPFLAAPDLPAFFEALSSYSGSMLVVLAARLLIIT  238
            +  +  + NPA+D+++A+    + HYP L+++ +P F+  L++Y G ++  +A  L ++T
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GLRTGELRGATWKEIDSDTAVWEIPAER------------MKMRRPHIVPLSSQAQAIIA  286
             +R++ELR A W E+D D ++W +PA R            MKM+  HIVPLS QA  ++ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  RIREMTGRYPHIFPGRNDPRKTMSEASINQVFKRIGYSGK--VTGHGFRHTMSTILHEQG  344
            ++++++G    +FPG +D+ K MSE ++N  ++ +GY  K  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  YNTAW----IETQLAHVDKNSIRGTYNHA-QYLDGRREMLQWYADYMDALECG  392
                W    IE QL+H ++N++R++Y H+ + LD RR M+QW ADY+D ++  
Sbjct  358  ---LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYE  407

405) W5S_1285 in NC_017845


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  251 bits (936),  Expect = 8e-68, Method: Compositional matrix adjust.
 Identities = 169/416 (41%), Positives = 273/416 (66%), Gaps = 29/416 (6%)

Query  1    MPLNARQIETAKPQDTEYKLTDGAGLYLLIKPNGAKYWRLKYRVAG--KEKKLSIGVYPD  58
            M LNARQ+ETAKP+D  YK++DG+GLYL + ++G+KYWR+KYR ++  KE +L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLAEARLKREEARKIVASGGDP-SEQKQVERQAKKISIDNTFKAIALEWHEYKRPNWSK  117
            ++LA+AR KR+EA+K++  G DP +EQK+ + +    S   TF +IA EWH  ++  WS 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN---SGAYTFETIAREWHASNK-RWSE  116

Query  118  GYAEDLMEAFENDIFPDIGKRPIAEIKPLEMLTSLRKLEKRGVLDKLRKIRQACNQVFRY  177
            +    ++  +E  IFP+IG   I ++K  ++L++++K++  G  D  ++++Q    + RY
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  178  AIVTGRAENNpaselasalpppkaTHYPHLLPDELPDFLRALSTYSGSKVTQLATRILML  237
            A+  +  ++NPAS++A+AL+  KA HYP L +  +P+FL  L++Y G  +T++A  + +L
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  238  TGVRTIELRQAEWKEFDFEKGLWEVPKER------------MKMRRPHLVPLSDQVIDAL  285
            T VR+ ELR A W EFDF+K+LW VP  R            MKM+  H+VPLS Q +  L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  286  QQLRAVTGRYNLVFPGRNDITKPMSEASINQVLKRIGYHGKA--TGHGFRHTMSTILHEQ  343
            +QL+ ++G  +L+FPG +D TK MSE ++N  L+ +GY+ K+   GHGFR      L E 
Sbjct  297  EQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGES  356

Query  344  GYNTAW----IELQLAHVDKNTIRGTYNH-AQYLEQRRGMLQWYGDFIDGLEHGDV  394
            G    W    IE QL+H ++N +R++Y H ++ L++RR M+QW +D++D ++  ++
Sbjct  357  G---LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHI  409

406) SEEH1578_01295 in NC_021810


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  249 bits (928),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 164/376 (44%), Positives = 238/376 (64%), Gaps = 26/376 (6%)

Query  1    MKLTARQVETAKPKEKPYKLADGGGLYLLVNPNGKRYWRLKYRSLG--KEKLLAIGVYPD  58
            MKL ARQVETAKPK+K YK+ADGGGLYL V+++G +YWR+KYR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VFLAEARSKREDAKRTLAAGNDPSLERKIEKLSRQQDAENSFEAITREWYQRRYDRWSVS  118
            V LA+AR+KR++AK+ L  G DP  E+K  +   ++ +  +FE+I+REW      RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  CREEMLRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARRATEKVRKVRQRCGEVWKYA  178
             R  +LR +E  +FP IG   I+++K  +LLA + K++A    +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VVTGRAEYNPAPDLASAVIPHEKEHYAFLTQDELPEFLRTLNTYAGSVLVKIAMQLLILT  238
            V  +  + NPA+D+A+A+      HY+ L    +PEFL  L +Y G V+ +IA++L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRLGELRQAEWQEFDFEKKVWNVPAER------------MKMRRPHLVPLSSQAIDLLN  286
             VR +ELR A W+EFDF+K +W VPA R            MKM+  H+VPLS QA+ LL+
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLKPMTGAGALLFPGRNNPKKPMSDMALTVLVRRIGYAGR--VTGHGFRHTMSTILHEQG  344
            QLK ++G   LLFPG +++ K MS+ ++   +R +GY  +  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEIQLAH  356
            +   W    IE QL+H
Sbjct  358  L---WSDDAIERQLSH  370

407) SU5_03538 in NC_017623


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  249 bits (928),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 164/376 (44%), Positives = 238/376 (64%), Gaps = 26/376 (6%)

Query  1    MKLTARQVETAKPKEKPYKLADGGGLYLLVNPNGKRYWRLKYRSLG--KEKLLAIGVYPD  58
            MKL ARQVETAKPK+K YK+ADGGGLYL V+++G +YWR+KYR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VFLAEARSKREDAKRTLAAGNDPSLERKIEKLSRQQDAENSFEAITREWYQRRYDRWSVS  118
            V LA+AR+KR++AK+ L  G DP  E+K  +   ++ +  +FE+I+REW      RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  CREEMLRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARRATEKVRKVRQRCGEVWKYA  178
             R  +LR +E  +FP IG   I+++K  +LLA + K++A    +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VVTGRAEYNPAPDLASAVIPHEKEHYAFLTQDELPEFLRTLNTYAGSVLVKIAMQLLILT  238
            V  +  + NPA+D+A+A+      HY+ L    +PEFL  L +Y G V+ +IA++L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRLGELRQAEWQEFDFEKKVWNVPAER------------MKMRRPHLVPLSSQAIDLLN  286
             VR +ELR A W+EFDF+K +W VPA R            MKM+  H+VPLS QA+ LL+
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLKPMTGAGALLFPGRNNPKKPMSDMALTVLVRRIGYAGR--VTGHGFRHTMSTILHEQG  344
            QLK ++G   LLFPG +++ K MS+ ++   +R +GY  +  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEIQLAH  356
            +   W    IE QL+H
Sbjct  358  L---WSDDAIERQLSH  370

408) CFSAN002069_16980 in NC_021812


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  249 bits (928),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 164/376 (44%), Positives = 238/376 (64%), Gaps = 26/376 (6%)

Query  1    MKLTARQVETAKPKEKPYKLADGGGLYLLVNPNGKRYWRLKYRSLG--KEKLLAIGVYPD  58
            MKL ARQVETAKPK+K YK+ADGGGLYL V+++G +YWR+KYR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VFLAEARSKREDAKRTLAAGNDPSLERKIEKLSRQQDAENSFEAITREWYQRRYDRWSVS  118
            V LA+AR+KR++AK+ L  G DP  E+K  +   ++ +  +FE+I+REW      RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  CREEMLRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARRATEKVRKVRQRCGEVWKYA  178
             R  +LR +E  +FP IG   I+++K  +LLA + K++A    +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VVTGRAEYNPAPDLASAVIPHEKEHYAFLTQDELPEFLRTLNTYAGSVLVKIAMQLLILT  238
            V  +  + NPA+D+A+A+      HY+ L    +PEFL  L +Y G V+ +IA++L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRLGELRQAEWQEFDFEKKVWNVPAER------------MKMRRPHLVPLSSQAIDLLN  286
             VR +ELR A W+EFDF+K +W VPA R            MKM+  H+VPLS QA+ LL+
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLKPMTGAGALLFPGRNNPKKPMSDMALTVLVRRIGYAGR--VTGHGFRHTMSTILHEQG  344
            QLK ++G   LLFPG +++ K MS+ ++   +R +GY  +  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEIQLAH  356
            +   W    IE QL+H
Sbjct  358  L---WSDDAIERQLSH  370

409) SeHA_C3266 in NC_011083


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  249 bits (928),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 164/376 (44%), Positives = 238/376 (64%), Gaps = 26/376 (6%)

Query  1    MKLTARQVETAKPKEKPYKLADGGGLYLLVNPNGKRYWRLKYRSLG--KEKLLAIGVYPD  58
            MKL ARQVETAKPK+K YK+ADGGGLYL V+++G +YWR+KYR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VFLAEARSKREDAKRTLAAGNDPSLERKIEKLSRQQDAENSFEAITREWYQRRYDRWSVS  118
            V LA+AR+KR++AK+ L  G DP  E+K  +   ++ +  +FE+I+REW      RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQA--ENSGAYTFETIAREWHASN-KRWSED  117

Query  119  CREEMLRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARRATEKVRKVRQRCGEVWKYA  178
             R  +LR +E  +FP IG   I+++K  +LLA + K++A    +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VVTGRAEYNPAPDLASAVIPHEKEHYAFLTQDELPEFLRTLNTYAGSVLVKIAMQLLILT  238
            V  +  + NPA+D+A+A+      HY+ L    +PEFL  L +Y G V+ +IA++L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRLGELRQAEWQEFDFEKKVWNVPAER------------MKMRRPHLVPLSSQAIDLLN  286
             VR +ELR A W+EFDF+K +W VPA R            MKM+  H+VPLS QA+ LL+
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLKPMTGAGALLFPGRNNPKKPMSDMALTVLVRRIGYAGR--VTGHGFRHTMSTILHEQG  344
            QLK ++G   LLFPG +++ K MS+ ++   +R +GY  +  V GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEIQLAH  356
            +   W    IE QL+H
Sbjct  358  L---WSDDAIERQLSH  370

410) KO11_04405 in NC_017660


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  248 bits (927),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 175/427 (41%), Positives = 273/427 (64%), Gaps = 27/427 (6%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAG--KEKRLAFGVYPE  58
            MKL  RQ++TAKPK+K YK++DGGGLYLEV+++GS+YWR+KYR ++  KE RLAFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSlaearekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHHLRADRWSLR  118
            V+LA+AR KR+ AKKLL  G DP   +K  +  +   Y  TFE+IAREWH     RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHA-SNKRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHA  178
             R  ++  +E  IFP IG   I ++K  +LL  +++++  G  +  ++++QR   + R A
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLSGYTGSVITKTATQIIMLT  238
            +  +  + NPA+D+A AL+T K  H+P L +  +P+FL  L++Y G V+T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDINFEKRLWEIPAE------------VMKMKRPHIVPMSDQVVELFK  286
             VR+ ELRFARW++++F+K LW +PA              MKMK  HIVP+S Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  SLKPITGLYPLVFVGRNDRTKPISKESVNQVIELLGY--KGRLTGHGFRHTMSTILHEEG  344
             LK I+G   L+F G +D TK +S ++VN  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IETQLAHVDKNAIRGTYNH-AQYLEGRKVMMQWYGNYLNSLIVDRDSSISF  399
            +   W    IE QL+H ++N +R++Y H ++ L+ R++M+QW ++YL+ +  ++ ++  +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEY  414

Query  400  PHLKTIN  406
            +++  I+
Sbjct  415  ARVCNIK  421

411) EKO11_0064 in NC_016902


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  248 bits (927),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 175/427 (41%), Positives = 273/427 (64%), Gaps = 27/427 (6%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAG--KEKRLAFGVYPE  58
            MKL  RQ++TAKPK+K YK++DGGGLYLEV+++GS+YWR+KYR ++  KE RLAFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSlaearekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHHLRADRWSLR  118
            V+LA+AR KR+ AKKLL  G DP   +K  +  +   Y  TFE+IAREWH     RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHA-SNKRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHA  178
             R  ++  +E  IFP IG   I ++K  +LL  +++++  G  +  ++++QR   + R A
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLSGYTGSVITKTATQIIMLT  238
            +  +  + NPA+D+A AL+T K  H+P L +  +P+FL  L++Y G V+T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDINFEKRLWEIPAE------------VMKMKRPHIVPMSDQVVELFK  286
             VR+ ELRFARW++++F+K LW +PA              MKMK  HIVP+S Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  SLKPITGLYPLVFVGRNDRTKPISKESVNQVIELLGY--KGRLTGHGFRHTMSTILHEEG  344
             LK I+G   L+F G +D TK +S ++VN  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IETQLAHVDKNAIRGTYNH-AQYLEGRKVMMQWYGNYLNSLIVDRDSSISF  399
            +   W    IE QL+H ++N +R++Y H ++ L+ R++M+QW ++YL+ +  ++ ++  +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEY  414

Query  400  PHLKTIN  406
            +++  I+
Sbjct  415  ARVCNIK  421

412) LY180_18845 in NC_022364


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  248 bits (927),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 175/427 (41%), Positives = 273/427 (64%), Gaps = 27/427 (6%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAG--KEKRLAFGVYPE  58
            MKL  RQ++TAKPK+K YK++DGGGLYLEV+++GS+YWR+KYR ++  KE RLAFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSlaearekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHHLRADRWSLR  118
            V+LA+AR KR+ AKKLL  G DP   +K  +  +   Y  TFE+IAREWH     RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHA-SNKRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHA  178
             R  ++  +E  IFP IG   I ++K  +LL  +++++  G  +  ++++QR   + R A
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLSGYTGSVITKTATQIIMLT  238
            +  +  + NPA+D+A AL+T K  H+P L +  +P+FL  L++Y G V+T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDINFEKRLWEIPAE------------VMKMKRPHIVPMSDQVVELFK  286
             VR+ ELRFARW++++F+K LW +PA              MKMK  HIVP+S Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  SLKPITGLYPLVFVGRNDRTKPISKESVNQVIELLGY--KGRLTGHGFRHTMSTILHEEG  344
             LK I+G   L+F G +D TK +S ++VN  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IETQLAHVDKNAIRGTYNH-AQYLEGRKVMMQWYGNYLNSLIVDRDSSISF  399
            +   W    IE QL+H ++N +R++Y H ++ L+ R++M+QW ++YL+ +  ++ ++  +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEY  414

Query  400  PHLKTIN  406
            +++  I+
Sbjct  415  ARVCNIK  421

413) ECW_m3936 in NC_017635


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  248 bits (927),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 175/427 (41%), Positives = 273/427 (64%), Gaps = 27/427 (6%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAG--KEKRLAFGVYPE  58
            MKL  RQ++TAKPK+K YK++DGGGLYLEV+++GS+YWR+KYR ++  KE RLAFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSlaearekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHHLRADRWSLR  118
            V+LA+AR KR+ AKKLL  G DP   +K  +  +   Y  TFE+IAREWH     RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHA-SNKRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHA  178
             R  ++  +E  IFP IG   I ++K  +LL  +++++  G  +  ++++QR   + R A
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLSGYTGSVITKTATQIIMLT  238
            +  +  + NPA+D+A AL+T K  H+P L +  +P+FL  L++Y G V+T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDINFEKRLWEIPAE------------VMKMKRPHIVPMSDQVVELFK  286
             VR+ ELRFARW++++F+K LW +PA              MKMK  HIVP+S Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  SLKPITGLYPLVFVGRNDRTKPISKESVNQVIELLGY--KGRLTGHGFRHTMSTILHEEG  344
             LK I+G   L+F G +D TK +S ++VN  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IETQLAHVDKNAIRGTYNH-AQYLEGRKVMMQWYGNYLNSLIVDRDSSISF  399
            +   W    IE QL+H ++N +R++Y H ++ L+ R++M+QW ++YL+ +  ++ ++  +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEY  414

Query  400  PHLKTIN  406
            +++  I+
Sbjct  415  ARVCNIK  421

414) WFL_19235 in NC_017664


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  248 bits (927),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 175/427 (41%), Positives = 273/427 (64%), Gaps = 27/427 (6%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAG--KEKRLAFGVYPE  58
            MKL  RQ++TAKPK+K YK++DGGGLYLEV+++GS+YWR+KYR ++  KE RLAFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSlaearekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHHLRADRWSLR  118
            V+LA+AR KR+ AKKLL  G DP   +K  +  +   Y  TFE+IAREWH     RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHA-SNKRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHA  178
             R  ++  +E  IFP IG   I ++K  +LL  +++++  G  +  ++++QR   + R A
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLSGYTGSVITKTATQIIMLT  238
            +  +  + NPA+D+A AL+T K  H+P L +  +P+FL  L++Y G V+T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDINFEKRLWEIPAE------------VMKMKRPHIVPMSDQVVELFK  286
             VR+ ELRFARW++++F+K LW +PA              MKMK  HIVP+S Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  SLKPITGLYPLVFVGRNDRTKPISKESVNQVIELLGY--KGRLTGHGFRHTMSTILHEEG  344
             LK I+G   L+F G +D TK +S ++VN  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IETQLAHVDKNAIRGTYNH-AQYLEGRKVMMQWYGNYLNSLIVDRDSSISF  399
            +   W    IE QL+H ++N +R++Y H ++ L+ R++M+QW ++YL+ +  ++ ++  +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEY  414

Query  400  PHLKTIN  406
            +++  I+
Sbjct  415  ARVCNIK  421

415) MADE_1010570 in NC_011138


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  248 bits (926),  Expect = 5e-67, Method: Compositional matrix adjust.
 Identities = 175/421 (42%), Positives = 270/421 (65%), Gaps = 25/421 (5%)

Query  1    MPLTDIQIKQAQASTKDIWLTDEKGLRLLVKKNGSKYWRLKYR--FQGKQKTLAIGVYPE  58
            M L   Q+  A++  K   ++D  GL L V  +GSKYWR+KYR   + K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLKDAREAVSEARRQLRDDIDPSAIKQEKKHLSSVSEIELFNTQARLWWNKQKGQWSEG  118
            V+L +AR    EA++ L ++IDP +  ++K   +  S    F+T AR W   +K +WSE+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKT--EQKEAQAENSGAYTFETIAREWHASNK-RWSED  117

Query  119  HAARIWTRLNDNALKTLGKRPIGEITPQDIIRTVQKIETRGALDVAQRVLQDIRRVCRFA  178
            H +R+   L+   +  +G   I ++   +++  ++K+++ G  DVAQR+ Q +  + R+A
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VQTGVLLHNPASELSGILEKRKTSHRASLPREELPQFLRDLDAYHQQGRLLTKLAIELLV  238
            VQ + +  NPAS+++G L   K+ H ++LP   +P+FL  L AY+  GR++T++A+EL +
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYR--GRVMTRIAVELSL  235

Query  239  HTFVRPGELAGARWDEFDLEEKLWRIPAHR------------MKMKSDHIVPLSRQALAV  286
             TFVR++EL  ARWDEFD++  LWR+PA R            MKMK +HIVPLSRQA+ +
Sbjct  236  LTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVL  295

Query  287  LENTKPFSARFEFVFPSERDRFKQMSDNTMRMAIFRMGYDGETKGKSKANPHGFRATASS  346
            LE+ K +S+  E++FP+++D  K MS+NT+  A+  MGYD     K+    HGFR+ A +
Sbjct  296  LEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYD----TKTEVCGHGFRTMARG  351

Query  347  ILNETGF-NPDAIERQLSHMERNGVRAAYTHHARYLEERKEMMQWWSDYLDSLKNNGNVT  405
             L E+G+ + DAIERQLSH ERN VRAAY H +  L+ER+ M+QWW+DYLD ++ + ++T
Sbjct  352  ALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYE-HIT  410

Query  406  P  406
            P
Sbjct  411  P  411

416) P12B_c3788 in NC_017663


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  247 bits (922),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 177/407 (44%), Positives = 261/407 (65%), Gaps = 27/407 (6%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAG--KEKRLAFGVYPE  58
            MKL  RQ++TAKPK+K YK++DGGGLYLEV+++GS+YWR+KYR ++  KE RLAFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSlaearekreaakkllSAGSDPGELKKAEKIAQKLNYKNTFEAIAREWHQLRADRWSLR  118
            V+LA+AR KR+ AKKLL  G DP   +K  +  +   Y  TFE+IAREWH     RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHA-SNKRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHA  178
             R  ++  +E  IFP IG   I ++K  +LL  +++++  G  +  ++++QR   + R A
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLAGYTGSVITKTATQIIMLT  238
            +  +  + NPA+D+A AL+T K  H+P L +  +P+FL  LA+Y G V+T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDINFEKRLWEIPAE------------VMKMKRPHIVPMSDQVVQLFG  286
             VR+ ELRFARW++++F+K LW +PA              MKMK  HIVP+S Q + L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  SLKPITGLNPLVFVGRNDRTKPISKESVNQVIELLGY--KGRLTGHGFRHTMSTILHEEG  344
             LK I+G + L+F G +D TK +S ++VN  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IETQLAHVDKNAIRGTYNH-AQYLEGRREMMQWYADYI  386
            +   W    IE QL+H ++N +R++Y H ++ L+ RR M+QW ADY+
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYL  401

417) Dd586_3778 in NC_013592


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  247 bits (922),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 170/407 (42%), Positives = 262/407 (65%), Gaps = 21/407 (5%)

Query  1    MPLTDAKIRSTKPANKPIKLADGGGLYLDVRPSGSKLWRYRYRIAG--KENVFALGEYPT  58
            M L   ++ ++KP +K  K+ADGGGLYL+V + GSK WR +YR ++  KE+ +A+G  PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   LSLAEARAEHDKARALVKQAIHPAHQRQLERMASYSANANTFEAVAREWIDKKSPDWTPY  118
            ++LA+ARA +D A+ L+ Q+I+P  +++  +  +  + A TFE++AREW   +   W+  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASNKR-WSED  117

Query  119  YLRQVERFLAADVFPAIGKLPIKSVKAAHLLEIIKRIEGRGAETVALLIRQWSSAIFRYA  178
               +V R+L   +FP IG   I+ +K++HLL  IK++++ G + VA  ++Q+ +AI RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VATLRADSDPAAALKGAIRRPKVEHHKPLSRTEIEDFMQALNRYGGYRTTVIALKLMLLT  238
            V     DS+PA+ + GA+   K  H  +L+ + + +F+  L  Y G   T IA+ L LLT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  FVRTVELRKAEWREFDLDGAEWRIPAGR------------MKMREEHIVPLSTQAIVLLR  286
            FVR+ ELR A W EFD+D + WR+PA R            MKM+EEHIVPLS QA+VLL 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  ELQTYTGGRGWLFPNYRNPQDCMTATTLNRALERMGFNGKDSIGFSAHGFRATASTILNE  346
            +L+  +G++  LFP  +++   M+  T+N AL  MG++ K  +   +HGFR+ A   L E
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEV--CGHGFRTMARGALGE  355

Query  347  MGYRP-DVIERQLAHTERNKVRASY-NRAVYLDERRKMMQAWADFVN  391
             G ++ D IERQL+H+ERN+VRA+Y + +  LDERR M+Q WAD+++
Sbjct  356  SGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

418) AMBLS11_09695 in NC_018692


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  247 bits (922),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 165/411 (41%), Positives = 261/411 (64%), Gaps = 26/411 (6%)

Query  1    MPLTDRAIKAIKPADKDQWVSDKDGLRLLVKSNGNKFWRLKYRFAG--KQKTLALGSYPE  58
            M L  R + + KP DK   ++D +GL L V ++G+K+WR+KYR ++  K+  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   TPLSKARELTMQARLTVKSGVDPAAEKREKVREEQRLNEDLFMNVAMEWWEQQSGGWTEN  118
              L++AR    +A+  +  G+DP +E++E   + +      F  +A EW +  +  W+E+
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEA--QAENSGAYTFETIAREW-HASNKRWSED  117

Query  119  HARRVWLR-LKDNSFTALGKRPISTIRPRDVIETVREIEKRGALDVAQRVLQDIGRVCRY  177
            H  RV LR L    F  +G   I  ++  +++  ++ ++  G  DVAQR+ Q +  + RY
Sbjct  118  HRSRV-LRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  178  AVQTERINFNPASELSDVLKSRKVEHRASLPREQLPAFVKALSTYEEKGRLLTKYAIQLL  237
            AVQ + I+ NPAS++++ L + K  H ++LP  ++P F+  L++Y  +GR++T+ A++L 
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAY--RGRVMTRIAVELS  234

Query  238  VLTFVRPGELRGARWEEFNFDDNIWRIPADR------------MKMRSEHIVPLSQQALQ  285
            +LTFVR++ELR ARW+EF+FD ++WR+PA R            MKM+ EHIVPLS+QA+ 
Sbjct  235  LLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMV  294

Query  286  VIELIKPITQQYQLLFPSERDRNDPMSDNTMRRAIFKLGYDGTKPGKAKANPHGFRATAS  345
            ++E +K I+ + +LLFP+++D    MS+NT+  A+  +GYD     K+    HGFR+ A 
Sbjct  295  LLEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYD----TKTEVCGHGFRTMAR  350

Query  346  SILNEQGF-NPDAIERQLSHMERNGVRAAYTHHARYLDERKEMMQWWADYV  395
            + L E G+ + DAIERQLSH ERN VRAAY H +  LDER+ M+QWWADY+
Sbjct  351  GALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYL  401

419) SSON53_21650 in NC_016822


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  246 bits (920),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 155/356 (44%), Positives = 229/356 (65%), Gaps = 19/356 (5%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLR  118
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH S+  RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHASN-KRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP IG   I ++K  +LL +++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTIL  340
            QL  IS +  L+F G +D+ K +S +++N  +  +GY  K  + GHGFR      L
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGAL  353

420) Mpe_A1087 in NC_008825


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  246 bits (919),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 186/423 (44%), Positives = 268/423 (64%), Gaps = 26/423 (6%)

Query  1    MKLTDLKLRTLTQSGKHF---DGGGLYLEVTAAGGRYWRMKYRHGG--KEKRLAFGVYPE  55
            MKL   ++ T    +K +   DGGGLYLEV+A G++YWRMKYR+ +  KE RLAFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  56   VTLraardrrdearrVLDQGGDPGELRKaakaqaaheaSNTFEAVARDWLTHQADSWEAV  115
            VTL  AR +RDEA+++L QG DP   +K A+A+ +   + TFE++AR+W +     W   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSG--AYTFETIAREWHA-SNKRWSED  117

Query  116  TLARIKAAFKADVFPQLGARPMAQIKPREVATVVKAIEARGAGDMAARVLQRIRAVFRFA  175
              +R+   +   +FP++G+  + Q+K  ++ + +K ++A G  D+A R+ QR+ A+ R+A
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  176  VVHERIDSNPMLDLQPGELLKPRQVRHRAALADRDLPVFLEKLAAYDGDVSTSAALRLLM  235
            V ++ IDSNP  D+  +  L   + RH +AL+   +P FL +LAAY G V T  A+ L +
Sbjct  178  VQNDYIDSNPASDMAGA--LSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSL  235

Query  236  LTAVRPGELRGARWDEIDMDAAEWRIPAER------------MKMRSPHVVPLSRQALDV  283
            LT VR++ELR ARWDE+D D + WR+PA R            MKM+  H+VPLSRQA+ +
Sbjct  236  LTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVL  295

Query  284  LQLMQPLSGERELVFPSPYYPGKPLSENTLNSALARMGY--KGLATAHGFRALFSTVANE  341
            L+ ++ +SG++EL+FP+   + K +SENT+NSAL  MGY  K    +HGFR++      E
Sbjct  296  LEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGE  355

Query  342  SGH-SPDVIERQLAHVERNAVRAAY-HRSTYLKDRAQLMQWWADYLDGRRSGKVVPLSSA  399
            SG  S D IERQL+H ERN VRAAY H S  L +R  ++QWWADYLD  +   + P   A
Sbjct  356  SGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYA  415

Query  400  RVA  402
            RV 
Sbjct  416  RVC  418

421) EAE_24695 in NC_015663


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  246 bits (919),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 171/411 (42%), Positives = 270/411 (66%), Gaps = 27/411 (6%)

Query  1    MTLNARQVETAKPRDKAYKLADGGGLYLMVNTNGSKYWRMKYRFAG--KEKKLSFGIYPD  58
            M LNARQVETAKP+DK+YK+ADGGGLYL V+++GSKYWRMKYR ++  KE +L+FG+ P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLAEARTKRDEARKLLANDKDPGEVKKATLLAKKLSVTNTFEAIALEWYSAKVSGWSKS  118
            ++LA+AR+KRDEA+KLL ++ DP   +K +   +  S + TFE+IA EW +++   WS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASN-KRWSED  117

Query  119  YADYVKRAFKNNVFPYLGSQPVNEIKPLALLSVLQKMEKRGATELASKVRQRCNEVFRYA  178
                V R +   +FP +GS  + ++K   LL+ ++K++  G  ++A +++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNPAADLGSALQGHEKQHYPFLTAAELPDFLQKLSNYSGSlitllatrllmlt  238
            +  +  + NPA+D+++AL     +HYP L ++ +P+FL +L+ Y G ++T +A  L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  glrtVELRLAEWREIDFDNRIWEIPKTR------------MKMKRPHVVPlsaqslsalr  286
             +R+ ELR+A W E+DFD+ +W +P  R            MKMK  H+VPLS Q++  L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  qlKVLTGNYKLIFAGRNDVNIAMSEASINMVIKRIGYDKRAT--GHGFRHTMSTILHEQG  344
            QLK ++G+  L+F+G +D    MSE ++N  ++ +GYD ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IETQLAHVDKNSIRGTYNH-AQYLEGRREMMQWYADFMDAFQ  390
            +   W    IE QL+H ++N++R++Y H ++ L+ RR M+QW AD++D +Q
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

422) Fraau_1988 in NC_017033


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  246 bits (918),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 169/410 (42%), Positives = 270/410 (66%), Gaps = 22/410 (5%)

Query  1    MPLTDTAARKAAPRDKSYRLPDGGGMYLEVMPNGSRYWRLKYR--FGGKEKRLALGVYPG  58
            M L       A P+DK+Y+++DGGG+YLEV ++GS+YWR+KYR   + KE RLA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISladarkrredarrlladGIDPGAARKEAKQEATAEAGGAVTFEQVARQWLARQDV-AE  117
            ++LA+AR +R++A++LL +GIDP + +KEA+    AE +GA TFE +AR+W A +   +E
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQ----AENSGAYTFETIAREWHASNKRWSE  116

Query  118  VTANKNQWLLEEYLFPSIGQRPIADITPRELLAALRETEDKGLLETARRSKIKAGQVFRY  177
               ++  + LE Y+FP IG   I ++   +LLA+++  +  G  + A+R + +   + RY
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  178  AIIEGLCEADPMASLRGALKTTRNRHHAAITDPVQIGGLMRAMDGFAGTFTVRCALLLSA  237
            A+ ++  +++P + + GAL TT+ RH +A+  + ++  ++  + ++ G    R A+ LS 
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSS-RFPEFLARLAAYRGRVMTRIAVELSL  235

Query  238  LLFVRPGELRKAEWAEMDLDGAMWRIPGEK------------MKMGAPHLVPLSEQALAI  285
            L FVR++ELR A W E D+D ++WR+P+ +            MKM   H+VPLS QA+ +
Sbjct  236  LTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVL  295

Query  286  LRDLHGLTGHARYVFSGLRTDSRPMSENTVNTALRALGYD-KATMTAHGFRSMAATRLNE  344
            L +L  ++G+   +F+G +  ++ MSENTVN+ALRA+GYD K+ + +HGFR+MA   L E
Sbjct  296  LEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGE  355

Query  345  MG-WNADAIERQLAHAESNKVRDAYTSQAQYLPERQKMMQAWADYLDSLK  393
             G W+ DAIERQL+H+E N+VR AY   ++ L ER+ M+Q WADYLD ++
Sbjct  356  SGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

423) amb0488 in NC_007626


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  246 bits (917),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 160/387 (42%), Positives = 255/387 (66%), Gaps = 18/387 (4%)

Query  23   GGGMFLLVTPQDQRYWRLKYR--FGGKEKLLALGVYPDVTIKTARQLRDDAKKQLANGID  80
            GGG++L V++++ +YWR+KYR   + KE  LA+GV P VT+  AR  RD+AKK L +GID
Sbjct  23   GGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGID  82

Query  81   PSDARKAKKSSQLLDGPDSFENVAREWFAKNVATWAETHSSKVLQRLESDVFPLIGTKPI  140
            P   +K  ++ +   G+ +FE +AREW A N   W+E H S+VL+ LE  +FP IG+  I
Sbjct  83   PKTEQKEAQAEN--SGAYTFETIAREWHASN-KRWSEDHRSRVLRYLELYIFPHIGSSDI  139

Query  141  GSITAPMILAVARKIEARGANDTAHRAVQNAGQIMRYAVATGRAERDPTGDLRGALPPVR  200
              + ++ +LA  +K++A G +D A+R  Q    IMRYAV  +  + +P++D+ GAL+  +
Sbjct  140  RQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTK  199

Query  201  HKHFAALTDPKLVGELLRAFDAFEGTVVVKAALQLAPLVFVRPGELRKAKWADIDLDAGS  260
             +H++AL  +++  E+L  + A+ G V+ + A++L+ L FVR++ELR A+W ++D+D + 
Sbjct  200  ARHYPALPSSRF-PEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSL  258

Query  261  WAFHASKAR--------KGETI--EHLVPLSTQAVEILRDLHQYTGNRECLFPG-RDPRK  309
            W   A +          +G  +  EH+VPLS QA+ +L +L Q +G++E LFPG +D+ K
Sbjct  259  WRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATK  318

Query  310  PMSEAAVNAALRRLGYDTKTEITGHGFRAMARTILAEQLGEDPHVIEQQLAHRVPDALGR  369
             MSE +VN+ALR +GYDTKTE+ GHGFR+MAR  L+E      + IE+QL+H   + +  
Sbjct  319  VMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRA  378

Query  370  AYNRTK-YIEQRRAMMQRWSDYLDTLK  395
            AY +T   +++RR M+Q+W+DYLD ++
Sbjct  379  AYIHTSEHLDERRLMVQWWADYLDIIQ  405

424) Y11_30661 in NC_017564


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  246 bits (919),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 163/394 (42%), Positives = 246/394 (63%), Gaps = 31/394 (7%)

Query  2    KPKE----MTDGGGLYLEVSASGAKYWRMKYRYGG--KEKRIAFGVYPHVSLADARQKRE  55
            KPK+    M+DGGGLYLEVSA G+KYWRMKYR  +  KE R+AFGV P V+LA+AR KR+
Sbjct  12   KPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRD  71

Query  56   TAKKLLASGTDPAEVKKADKLAQRLSSENSFEAISREWHKAKADRWSLGYREEIMSTFEA  115
             AKKLL  G DP   +K  +  +  S+  +FE+I+REWH A   RWS + R  ++  +E 
Sbjct  72   EAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWH-ASNKRWSEDHRSRVLRYLEL  128

Query  116  DIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTHKVRQRCGEVFRYAIITGRAEYNPA  175
             IFP IG   I ++   +LL  +++++  G  + +++++QR   + RYA+  +  + NPA
Sbjct  129  YIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPA  188

Query  176  PDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGVRTKEMRFAT  235
            +D+A+ALST K +HYP L++   P F+  L +Y G ++T+ A  + +LT VR+ E+RFA 
Sbjct  189  SDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFAR  248

Query  236  WQEIDLESGLWEIPAER------------MKMRRPHIVPLSTHVIALFKQLLPITGHYPY  283
            W+E+D++ +LW +PA R            MKM+  HIVPLS + + L+ QL  I+G+   
Sbjct  249  WDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKEL  308

Query  284  IFIGRNDRKKPISKETVNQVIELLGYKGRAT--GHGFRHTMSTILHEQGYDSAW----IE  337
            +F G +D  K +S +TVN  +  +GY  ++   GHGFR      L E G    W    IE
Sbjct  309  LFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGL---WSDDAIE  365

Query  338  LQLAHVDKNSIRGTYNH-AQYLEKRRDMLQWYAD  370
             QL+H ++N++R++Y H ++ L+ RR M+QW AD
Sbjct  366  RQLSHSERNNVRAAYIHTSEHLDERRLMVQWWAD  399

425) SN31241_7100 in NC_021902


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  246 bits (919),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 168/410 (41%), Positives = 263/410 (65%), Gaps = 27/410 (6%)

Query  1    MALTARQVETARPKEKDYKLSDERGLYLLVKTTGARYWRLKYRIAG--KEKKLALGVYPD  58
            M L ARQVETA+PK+K YK++D  GLYL V + G++YWR+KYR ++  KE +LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAEARIKRDDARKIISEGGDPGEKKRKEKLTQKISATNTFHALATEWHQHKSLSWSES  118
            V+LA+AR KRD+A+K++ +G DP   ++  +  +  S++ TF+++A EWH  +   WSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASNK-RWSED  117

Query  119  YARSVLEALDKDIFPYLGKRSVTDILPLEMLEILRRIEKRGSLEKLRKVRQYCNQIFRYA  178
                VL  L+  IFP +G   + ++   ++L  +++++  G  +  ++++Q    I RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IATGRATVNPASELTSTLAAPKAAHFPHLRADELPVFLRKLAEYHGSPVTrmatnllllt  238
            +  +    NPAS+++++L++ KA H+P L +  +P FL +LA Y+G  +TR+A +L LLT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  glrtielrSAEWSEIDFDNALWTIPESR------------MKMRRKHVVPLSRQTTDILL  286
             +R+ ELR A W E+DFD++LW +P  R            MKM+  H+VPLSRQ+  +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLKTFSGQYQLVFPGRCDINKPMSEASINMVLKRIGYDGRAT--GHGFRHTMSTILHEQG  344
            QLK +SG+ +L+FPG  D  K MSE ++N  L+ +GYD ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNAIRGTYNH-AQYLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N +R++Y H ++ LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

426) SeHA_C4738 in NC_011083


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  245 bits (913),  Expect = 5e-66, Method: Compositional matrix adjust.
 Identities = 169/410 (42%), Positives = 262/410 (64%), Gaps = 27/410 (6%)

Query  1    MALTARQVETARPKEKDYKLSDERGLYLLVKTTGARYWRLKYRIAG--KEKKLALGVYPD  58
            M L ARQVETA+PK+K YK++D  GLYL V + G++YWR+KYR ++  KE +LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAEARIKRDDARKIISEGGDPGEKKRKEKLTQKISATNTFHALATEWHQHKSLSWSES  118
            V+LA+AR KRD+A+K++ +G DP   ++  +  +  S++ TF+++A EWH  +   WSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASNK-RWSED  117

Query  119  YARSVLEALDKDIFPYLGKRSVTDILPLEMLEILRRIEKRGSLEKLRKVRQYCNQIFRYA  178
                VL  L+  IFP +G   + ++   ++L  +++++  G  +  ++++Q    I RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IATGRATVNPASELTSTLAAPKAAHFPHLRADELPVFLRKLAEYHGSPVTrmatnllllt  238
            +  +    NPAS+++++L++ KA H+P L +  +P FL +LA Y+G  +TR+A +L LLT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  glrtielrSAEWSEIDFDNALWTIPESR------------MKMRRKHVVPLSRQATDILL  286
             +R+ ELR A W E+DFD++LW +P  R            MKM+  H+VPLSRQA  +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLKTFSGQYRLVFPGRCDINKPMSEASINMVLKRIGYDGRAT--GHGFRHTMSTILHEQG  344
            QLK +SG+  L+FPG  D  K MSE ++N  L+ +GYD ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNAIRGTYNHA-QYLDGRREMMQWYADYIDSL  389
            +   W    IE QL+H ++N +R++Y H+ + LD RR M+QW ADY+D +
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

427) plu0125 in NC_005126


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  244 bits (909),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 175/407 (43%), Positives = 259/407 (64%), Gaps = 27/407 (6%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAG--KEKCLAFGVYPE  58
            MKL  RQ++TAKPK+K YK++DGGGLYLEV+++GS+YWR+KYR ++  KE  LAFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAQarekreaakkllSAGSDLGELKKAEKIAQKLNYDNTFEAIAREWHQLRADRWSLR  118
            V+LAQAR KR+ AKKLL  G D    +K  +  +   Y  TFE+IAREWH     RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHA-SNKRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRRRCGEVFRHA  178
             R  ++  +E  IFP IG   I ++K  +LL  +++++  G  +  +++++R   + R A
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLKDLAGYTGSVITKTATQIIMLT  238
            +  +  + NPA+D+A AL+T K  H+P L +  +P+FL  LA+Y G V+T+ A ++ +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDINFEKRLWEIPAE------------VMKMKRPHIVPMSDQVVELFE  286
             VR+ ELRFARW++++F+K LW +PA              MKMK  HIVP+S Q + L+E
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  SLKPITGLYPLVFVGRNDRTKPISKESVNQVIELLGY--KGRLTGHGFRHTMSTILHEEG  344
             LK I+G   L+F G +D TK +S ++VN  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IETQLAHVDKNAIRGTYNH-AQYLEGRREMMQWYSDYI  386
            +   W    IE QL+H ++N +R++Y H ++ L+ RR M+QW +DY+
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYL  401

428) EcE24377A_3377 in NC_009801


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  243 bits (907),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 168/414 (41%), Positives = 264/414 (64%), Gaps = 27/414 (6%)

Query  1    MALTARQVETARPKEKDYKLSDERGLYLLVKTTGARYWRLKYRIAG--KEKKLALGVYPD  58
            M L ARQVETA+PK+K YK++D  GLYL V + G++YWR+KYR ++  KE +LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLAEARIKRDDARKIISEGGDPGEKKRKEKLTQKISATNTFHALATEWHQHKSLSWSES  118
            ++LA+AR KRD+A+K++ +G DP   ++  +  +  S++ TF+++A EWH  +   WSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASNK-RWSED  117

Query  119  YTRSVLEALDKDIFPYLGKRSVTDILPLEMLEILRRIEKRGSLEKLRKVRQYCNQIFRYA  178
                VL  L+  IFP +G   + ++   ++L  +++++  G  +  ++++Q    I RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IATGRATVNPASELTSTLAAPKAAHFPHLRADELPVFLRKLAEYHGSPVTrmatnllllt  238
            +  +    NPAS+++++L++ KA H+P L +  +P FL +LA Y+G  +TR+A +L LLT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  glrtielrSAEWSEIDFDNALWTIPESR------------MKMRRKHVVPLSRQATDILL  286
             +R+ ELR A W E+DFD++LW +P  R            MKM+  H+VPLSRQA  +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLKTFSGQYRLVFPGRCDINKPMSEASINMVLKRIGYDGRAT--GHGFRHTMSTILHEQG  344
            QLK +SG+  L+FPG  D  K MSE ++N  L+ +GYD ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNHAL-YLDGRREMMQWYADYIDSLSIQE  393
            +   W    IE QL+H ++N++R++Y H+   LD RR M+QW ADY+D +  ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEH  408

429) RSc0968 in NC_003295


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  243 bits (907),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/405 (43%), Positives = 268/405 (67%), Gaps = 22/405 (5%)

Query  1    MPLTDLSARNAKPQDKPYRLADGLGMYLEVMPNGSKYWRLKYRIAG--KEKRLALGVYPS  58
            M L       AKP+DK Y++ADG G+YLEV ++GSKYWR+KYR ++  KE RLA+GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VGlaqartarddarrliaaGTDPSQARKEAKLATTTARTHTFEVVAREWHEKQSATWVPT  118
            V LAQAR+ RD+A++L+  G DP   +KEA+   + A   TFE +AREWH  +   W   
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGA--YTFETIAREWHASNK-RWSED  117

Query  119  YATKVLHSLETDIFPDLGARPITEITAPQMLATLRKVESRDALETVARLQQRCSAVFRYA  178
              ++VL+ LE  IFP++G+  I ++ ++++LA ++KV++ +  +   RLQQR +A+ RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VVTGRAAHNPCTDLKGAFKTAKVQHMARVQANEVPTLIKNIRGYDGDLITRIALQFMALT  238
            V  +    NP +D+ GA+ T+K +H + + ++  P ++  + +Y G ++TRIA+++  LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  FVRTKELIGAQWSEIDFETEEWRIPAER------------MKMREPHFVPLSWQAIALLR  286
            FVR+ EL  A+W E+DF+   WR+PA R            MKM+E H+VPLS+QA+ LL 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  AAEKMTGNRQYVFQSPKGRTHI-SNNTILYALYRLGYHSR--MTGHGFRGLASTMLHEQG  343
               +++G+++ +F +  + T + S+NT+  AL  +GY+++  + GHGFR +A   L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  344  F-NPDVIERQLAHAERNKVRAAYNH-AQYLPERRRMMQHWADHLD  386
            + + D IERQL+H+ERN+VRAAY H ++ L ERR M+Q WAD LD
Sbjct  358  LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

430) EcSMS35_3112 in NC_010498


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  243 bits (907),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 169/414 (41%), Positives = 264/414 (64%), Gaps = 27/414 (6%)

Query  1    MALTARQVETARPKEKDYKLSDERGLYLLVKTTGARYWRLKYRIAG--KEKKLALGVYPD  58
            M L ARQVETA+PK+K YK++D  GLYL V + G++YWR+KYR ++  KE +LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAEARIKRDDARKIISEGGDPGEKKRKEKLTQKISATNTFHALATEWHQHKSLSWSES  118
            V+LA+AR KRD+A+K++ +G DP   ++  +  +  S++ TF+++A EWH  +   WSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASNK-RWSED  117

Query  119  YARSVLEALDKDIFPYLGKRSVTDILPLEMLEILRRIEKRGSLEKLRKVRQYCNQIFRYA  178
                VL  L+  IFP +G   + ++   ++L  +++++  G  +  ++++Q    I RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IATGRATVNPASELTSTLAAPKAAHFPHLRADELPVFLRKLAEYHGSPVTrmatnllllt  238
            +  +    NPAS+++++L++ KA H+P L +  +P FL +LA Y+G  +TR+A +L LLT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  glrtielrSAEWSEIDFDNALWTIPESR------------MKMRRKHVVPLSRQATDILL  286
             +R+ ELR A W E+DFD++LW +P  R            MKM+  H+VPLSRQA  +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLKTFSGQYRLVFPGRCDINKPMSEASINMVLKRIGYDGRAT--GHGFRHTMSTILHEQG  344
            QLK +SG+  L+FPG  D  K MSE ++N  L+ +GYD ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IEMQLAHVDKNSIRGTYNHAL-YLDGRREMMQWYADYIDSLSIQE  393
            +   W    IE QL+H ++N++R++Y H+   LD RR M+QW ADY+D +  ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEH  408

431) YPK_0061 in NC_010465


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  241 bits (900),  Expect = 5e-65, Method: Compositional matrix adjust.
 Identities = 180/411 (44%), Positives = 265/411 (65%), Gaps = 27/411 (6%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAG--KEKRLAFGVYPE  58
            MKL  RQ++TAKPK+K YK++DGGGLYLEV+++GS+YWR+KYR ++  KE RLAFGV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLAQarekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHQLRADRWSLR  118
            V+LAQAR KR+ AKKLL  G DP   +K  +  +   Y  TFE+IAREWH     RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHA-SNKRWSED  117

Query  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPLELLETLRKMEKRGALEKMRKVRQRCGEVYRYA  178
             R  ++  +E  IFP IG   I ++K  +LL  ++K++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNpapdlataltppKKQHFPFLTAEELPYFLKNLAGYTGSVitktatkiillt  238
            +  +  + NPA+D+A AL+  K +H+P L +  +P FL  LA+Y G V+T+ A  + LLT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  aVRTQELRFTRWQDIDLEKGIWEIPAE------------VMKMKRPHVVPLSKQVIELFN  286
             VR+ ELRF+RW+++D++K++W +PA              MKMK  H+VPLS+Q + L++
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  SLKPLSGHYELVFIGRNDHRKPISKESVNQVIELLGY--KGRLTGHGFRHTMSTILHEKG  344
             LK +SG+ EL+F G +D  K +S ++VN  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  YNSAW----IETQLAHIDKNAIRGTYNHA-QYMDGRREMMQWYADYLDALE  390
                W    IE QL+H ++N +R++Y H+ + +D RR M+QW ADYLD ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

432) PSPTO_5344 in NC_004578


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  241 bits (900),  Expect = 5e-65, Method: Compositional matrix adjust.
 Identities = 163/407 (41%), Positives = 263/407 (65%), Gaps = 21/407 (5%)

Query  1    MPLSDTTIRTAKPKDKLYRLTDANGLCLEIAPSGSKLWRYRYR--FNGKAKMLALGAYPA  58
            M L+   + TAKPKDK Y+++D+ GL LE+++ GSK WR +YR   + K   LA+G  P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLLKARQLRDSARQLLVEGNDPGEHKKTAQQAQKVEGLTFETLAREWFAYNSPRWAEST  118
            VTL +AR  RD A++LLV+G DP  ++K AQ A++  + TFET+AREW A ++ RW+E  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQ-AENSGAYTFETIAREWHA-SNKRWSEDH  118

Query  119  TYKAKLYMENDLIPGIGARPVKALTRPDLVDLVRKVEARGTLNAAGKIRQWLHQIFRYGL  178
              +   Y+E  ++P IG+  ++ L  ++L+  ++KV+A G  + A +++Q++  I RY++
Sbjct  119  RSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAV  178

Query  179  AKGVVESNPATDLDVVAAPQKAPRHHPHVPFSELPELLEICDGSKINTLTRCAIHLLVLT  238
             ++ ++SNPA+D+    +  KA RH P +P S +PE+L    + +   +TR A++L +LT
Sbjct  179  QNDYIDSNPASDMAGALSTTKA-RHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  AVRPGELRNAPWSEFDLDAATWAIPKER------------MKARRPHVVPLPTQAVDILR  286
             VR++ELR A W EFD+D + W +P  R            MK +  H+VPL+ QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLQPITGRYPLVFAGQHNPSRPMSENTINKALRLLGYENRQT--GHGFRHLLSTELNGRG  344
            QL+ I+G   L+F+G+H++++ MSENT+N ALR +GY+ +    GHGFR +    L   G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  Y-NKDWIERQLAHGDADGIRDTYNHAS-YLEQRRGMMQAWADSIDAL  389
              + D IERQL+H++ + +R +Y H+S  L++RR M+Q WAD +D +
Sbjct  358  LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

433) BURPS1710b_1290 in NC_007434


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  241 bits (898),  Expect = 7e-65, Method: Compositional matrix adjust.
 Identities = 165/408 (41%), Positives = 269/408 (66%), Gaps = 25/408 (6%)

Query  1    MPLTDVQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLG--KQKTLALGVYPA  58
            M L   QV  AK+    YK++DG G++L V ++G+KYWR+ YR  +  K+  LA+GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLATARKKRDEAREQLAAGIDPGEAKKEARRTAEIAAANSFEAVAREWFDSQRPGWSDG  118
            VTLA AR KRDEA+  L  GIDP   +KEA+  AE ++A +FE++AREW  S++  WS++
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQ--AENSGAYTFETIAREWHASNKR-WSED  117

Query  119  YAEKVLNSLEVDVFPKIGPRPIAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYG  178
               +VL  LE+ +FP IG+  I ++ ++++L+ ++ V+A G ++ A+R+ QR  A+ +Y+
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRCSRNPAADIDAQTVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLM  238
            +  +    NPA+D+ +     K+   +H + + ++ +P+++  + AY+G ++TR+A+ L 
Sbjct  178  VQNDYIDSNPASDMAGALSTTKA---RHYPALPSSRFPEFLARLAAYRGRVMTRIAVELS  234

Query  239  ALTFVRTTEMIRAEWSEFDEAAAEWRVPPER------------MKMRDPHIVPLSRQALD  286
             LTFVR++E+  A W EFD   + WRVP+ R            MKM++ HIVPLSRQA+ 
Sbjct  235  LLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMV  294

Query  287  VLAQLRALNGQHRFVFYSVQGRSHI-SNNTMLYALYRIGY--KSRMTGHGFRGLAATALR  343
            +L QL+ ++G+  ++F + ++ + + S+NT+  AL  +GY  K+ + GHGFR +A  AL 
Sbjct  295  LLEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALG  354

Query  344  ELGF-GRDVVERQMAHAERNQVTAAYVHA-EYLPERRRMMQAWGDHLD  389
            E G+ + D +ERQ++H+ERN+V AAY+H+ E L ERR M+Q W+D LD
Sbjct  355  ESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

434) Dsui_0218 in NC_016616


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  241 bits (898),  Expect = 9e-65, Method: Compositional matrix adjust.
 Identities = 169/406 (42%), Positives = 252/406 (63%), Gaps = 20/406 (4%)

Query  5    LTDTKVRNAKPAEKPYKLQDGQGLYLDVRPSGAKFWRYRYWITPEK-DGIYTIGEYPVVS  63
            L   +V  AKP +K YK+ DG GLYL+V + G+K+WR +Y+  ++K ++  ++G  P V+
Sbjct  3    LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT  62

Query  64   LSDarrerewareqaKQGINPTHAKEAERLRRMGEHANTFEAVAREWIDQNRNHWTEKYL  123
            L++AR  R+ A+    QGI+P   +   +    G  A TFE++AREW   N+ +W+E   
Sbjct  63   LAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSG--AYTFETIAREWHASNK-RWSEDHR  119

Query  124  YQVERFLGNDVFPKIGALPIRMVTSAHLLGIIRTVEERGAKSIAVLIRQWSGQIFRYAVA  183
             +V R+L   +FP IG+  IR + ++HLL+ I+ V+  G   +A  ++Q+   I RYAV 
Sbjct  120  SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ  179

Query  184  TLRADSDPSAPLRGAIKKDPVRHNPPLSKDEIPVMLNKLQKYGGYRGTVL---ATKLMLY  240
                DS+P++ + GA+     RH P+L+   +P  L +L   ++YRG V+   A  L L 
Sbjct  180  NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARL---AAYRGRVMTRIAVELSLL  236

Query  241  TFVRTVELRKAEWTEFDLEGGEWRVPADRMKMK------KQMKVGESHIVPLSRQALEVL  294
            TFVR+ ELR A W EFD++ + WRVPA R  +K      + MK+ E HIVPLSRQA+ +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  295  KELKTLSGGRKFLFPNLRTPDTCMTATTINKALERMGYAGK--FSGHGFRATASTMLHEL  352
             +LK +SG++ +LFP  + +   M+  T+N AL  MGY  K    GHGFR+ A   L E 
Sbjct  297  EQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGES  356

Query  353  G-WNEKAIERQLAHAERNKVKAAYNHA-EYLPERREMMQAWSDWID  396
            G W++ AIERQL+H+ERN+V+AAY H+ E L ERR M+Q W+D +D
Sbjct  357  GLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

435) CSSP291_04405 in NC_020260


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  240 bits (894),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 169/408 (42%), Positives = 267/408 (66%), Gaps = 27/408 (6%)

Query  1    MPLNARQVETAKPRDKAYKLADGGGLYLMVNTNGSKYWRMKYRFAG--KEKKLSFGTYPD  58
            M LNARQVETAKP+DK+YK+ADGGGLYL V+++GSKYWRMKYR ++  KE +L+FG  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLAEARTKRDEARKTLANDKDPGEVKKAELLAQKLSVTNTFEAIAVEWYNAKVSGWSKN  118
            ++LA+AR+KRDEA+K L ++ DP   +K     +  S + TFE+IA EW  ++   WS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASN-KRWSED  117

Query  119  YADYVNRAFKNNVFPFVGSQPVNEIKPLELLSVLQRMEKRGAPELASKVRQRCSEVFRYA  178
                V R +   +FP +GS  + ++K  +LL+ +++++  G  ++A +++QR + + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNPAADLGSALQGYEKQHYPFLTAAELPEFLQKLSQYTGSlvtllatrllmlt  238
            +  +  + NPA+D+++AL     +HYP L ++ +PEFL +L+ Y G ++T +A  L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  glrtvELRMAEWSEIDFENHIWEIPKSR------------MKMRRPHIVPlsaqslaalr  286
             +R+ ELR A W E+DF++ +W +P  R            MKM+  HIVPLS Q++  L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  qlkqlTGTYQFIFAGRNDVNKPMSEASINMVIKRIGYDKRAT--GHGFRHTMSTILHEEG  344
            QLKQ++G  +++F+G +D  K MSE ++N  ++ +GYD ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNAIRGTYNHA-QYLEGRKEMMQWYGDYLD  387
            +   W    IE QL+H ++N +R++Y H+ + L+ R+ M+QW +DYLD
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

436) ECL_03688 in NC_014121


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  240 bits (894),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 169/408 (42%), Positives = 267/408 (66%), Gaps = 27/408 (6%)

Query  1    MPLNARQVETAKPRDKAYKLADGGGLYLMVNTNGSKYWRMKYRFAG--KEKKLSFGTYPD  58
            M LNARQVETAKP+DK+YK+ADGGGLYL V+++GSKYWRMKYR ++  KE +L+FG  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLAEARTKRDEARKTLANDKDPGEVKKAELLAQKLSVTNTFEAIAVEWYNAKVSGWSKN  118
            ++LA+AR+KRDEA+K L ++ DP   +K     +  S + TFE+IA EW  ++   WS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASN-KRWSED  117

Query  119  YADYVNRAFKNNVFPFVGSQPVNEIKPLELLSVLQRMEKRGAPELASKVRQRCSEVFRYA  178
                V R +   +FP +GS  + ++K  +LL+ +++++  G  ++A +++QR + + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNPAADLGSALQGYEKQHYPFLTAAELPEFLQKLSQYTGSlvtllatrllmlt  238
            +  +  + NPA+D+++AL     +HYP L ++ +PEFL +L+ Y G ++T +A  L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  glrtvELRMAEWSEIDFENHIWEIPKSR------------MKMRRPHIVPlsaqslaalr  286
             +R+ ELR A W E+DF++ +W +P  R            MKM+  HIVPLS Q++  L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  qlkqlTGTYQFIFAGRNDVNKPMSEASINMVIKRIGYDKRAT--GHGFRHTMSTILHEEG  344
            QLKQ++G  +++F+G +D  K MSE ++N  ++ +GYD ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNTAW----IETQLAHVDKNAIRGTYNHA-QYLEGRKEMMQWYGDYLD  387
            +   W    IE QL+H ++N +R++Y H+ + L+ R+ M+QW +DYLD
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

437) GBP346_A1152 in NC_012695


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 164/408 (41%), Positives = 269/408 (66%), Gaps = 25/408 (6%)

Query  21   MPLTDVQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLG--KQKTLALGVYPA  78
            M L   QV  AK+    YK++DG G++L V ++G+KYWR+ YR  +  K+  LA+GV P+
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  79   VTLATARKKRDEAREQLAAGIDPGEAKKEARRTAEIAAANSFEAVAREWFDSQRPGWSDG  138
            VTLA AR KRDEA+  L  GIDP   +KEA+  AE ++A +FE++AREW  S++  WS++
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQ--AENSGAYTFETIAREWHASNKR-WSED  117

Query  139  YAEKVLNSLEVDVFPKIGPRPIAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYG  198
               +VL  LE+ +FP IG+  I ++ ++++L+ ++ V+A G ++ A+R+ QR  A+ +Y+
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  199  IVTGRCSRNPAADIDAQTALKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLM  258
            +  +    NPA+D+ +  +  K+   +H + + ++ +P+++  + AY+G ++TR+A+ L 
Sbjct  178  VQNDYIDSNPASDMAGALSTTKA---RHYPALPSSRFPEFLARLAAYRGRVMTRIAVELS  234

Query  259  ALTCVRTTEMIRAEWSEFDEAAAEWRVPPER------------MKMRDPHIVPLSRQALD  306
             LT VR++E+  A W EFD   + WRVP+ R            MKM++ HIVPLSRQA+ 
Sbjct  235  LLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMV  294

Query  307  VLAQLRALNGQHRFVFYSVQGRSHI-SNNTMLYALYRIGY--KSRMTGHGFRGLAATALR  363
            +L QL+ ++G+  ++F + ++ + + S+NT+  AL  +GY  K+ + GHGFR +A  AL 
Sbjct  295  LLEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALG  354

Query  364  ELGF-GRDVVERQMAHAERNQVTAAYVHA-EYLPERRRMMQAWGDHLD  409
            E G+ + D +ERQ++H+ERN+V AAY+H+ E L ERR M+Q W+D LD
Sbjct  355  ESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

438) intS in NC_014228


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  235 bits (876),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 155/383 (41%), Positives = 246/383 (65%), Gaps = 20/383 (5%)

Query  1    MKLTARQVETVKPQEKDFKLSDGGGLYLLVKVNGSKYWRLKYRIAG--KEKLLAIGTFPL  58
            MKL ARQVET KP++K +K++DGGGLYL V  +GSKYWR+KYR ++  KE  LA+G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLAEARRKRDEAKKLIAEGIDPNQDKKQKKLAAQGEISNTFESIAREWYEGRKDRWSVG  118
            VTLA+AR KRDEAKKL+ +GIDP+ ++K+ +    G  + TFE+IAREW  + K RWS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSG--AYTFETIAREWHASNK-RWSED  117

Query  119  YREDMMDAFEKDVFPYIGHRPIAEIKPLELLDLLSIMEKRGVTDKLKKVRQRCGEVWTYA  178
             R  ++  +E  +FP IG   I ++K  +LL  +  ++  G  D  ++++QR   +  YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLASAFIPHQREHYAHLSVDELPEFLRSIDKYMGSQIVRTALRMLILT  238
            +  +  + NPA+D+A+A+   +  HY+ L+   +PEFL  +  Y G  + R A+ + +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRPGELRKAEWSEIDLDKAVWTIPAEK------------MKMRCTHVVPLSEQVINLLK  286
             VR++ELR A W E+D+DK++W +PA +            MKM+  H+VPLS Q + LL 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIQPISGNYQYVFPSRTDYRKHISDMAINTMIRRMGYSGRAT--GHGFRHTMSTILHDQD  344
            Q++ ISG+ + +FP+  D  K +S+ ++N+ +R MGY  ++   GHGFR      L + +
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  Y-NTEWVEKQLAHVDKNSIRGTY  366
              + + +E+QL+H ++N++R++Y
Sbjct  358  LWSDDAIERQLSHSERNNVRAAY  380

439) Tbd_2005 in NC_007404


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  234 bits (872),  Expect = 9e-63, Method: Compositional matrix adjust.
 Identities = 173/407 (43%), Positives = 253/407 (63%), Gaps = 24/407 (5%)

Query  17   VALTDTAVKKAKPGDKPYKMADEKGLYLLVNQAG-KYWRMDYRFLGKRKT--LALGVYSD  73
            + L    V  AKP DK YKMAD  GLYL V+  G KYWRM YR  + +K   LA+GV + 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  74   VSLararqkrddaraMLADGTDPGEQRKETKRANQAAQANSFEAVAREWHAMKLKRKWTQ  133
            V+LA+AR KRD+A+ +L +G DP  ++KE++   + + A +FE++AREWHA +  ++W++
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQ--AENSGAYTFETIAREWHASN--KRWSE  116

Query  134  STADKTMAQLEAYVFPEMGHLPIASVKASQLLAMLRKVENRGIAYTAVRLREVCGQIFRY  193
                + +  LE Y+FP++G   I  +K+S+LLA ++KV+  G    A RL++    I RY
Sbjct  117  DHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRY  176

Query  194  GVATGRAEDNPAAHLLGALHKPEVNHRPAITDRRGFGAFLRDLREATGYDAVTRHAAYFA  253
            +V  +  + NPA+++ GAL      H PA+   R F  FL  L    G   +TR A  ++
Sbjct  177  AVQNDYIDSNPASDMAGALSTTKARHYPALPSSR-FPEFLARLAAYRG-RVMTRIAVELS  234

Query  254  LLTFVRAQEFRYAKWEEIDWQAKEWKVPAKRM---------KTGKALPAHTVPLSQQALA  304
            LLTFVR+ E+R+A+W+E+D +   W+VPAKR          +  K    H VPLS+QA+ 
Sbjct  235  LLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMV  294

Query  305  LLTELKNLTGHSPYLFPKVKGYGDAEVISENTVGKMLNKMGYQGRQ--CVHGFRASARSI  362
            LL +LK+++G+   LFP   + + + V+SENTV   L  MGY+ +   C HGFR+ AR+ 
Sbjct  295  LLEQLKQISGDKELLFP--GDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGA  352

Query  363  LSEQG-WSREAMERQLDHKETDSTVAAYAR-SEHLPERRNMMQAWAD  407
            L+E G WS +A+ERQL H E ++  AAY + SEHL ERR M+Q WAD
Sbjct  353  LGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWAD  399

440) C380_06330 in NC_018708


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  233 bits (867),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 171/392 (44%), Positives = 248/392 (64%), Gaps = 29/392 (7%)

Query  21   RLADEKALYLEVTAAGGKYWRWKYR--YGGKEKRLALGVYPDVTLAQAREARDQARKVLA  78
            ++AD  +LYLEV+A G+KYWR KYR   + KE RLA+GV P VTLAQAR  RD+A+K+L 
Sbjct  19   KMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLV  78

Query  79   GGDDPGQLKRDAKMTSAVHQANTFEAVARVWWE---HWRDGKSERHAAYAIKRLEADAFP  135
             G DP   +++A+  ++   A TFE++AR W     +W ++   R   Y    LE   FP
Sbjct  79   QGIDPKTEQKEAQAENSG--AYTFETIAREWHASNKRWSEDHRSRVLRY----LELYIFP  132

Query  136  VLGARPIANITAKDLTRMAKAVQDRGAIDLAHRVLQMAGQVMRYAVAHDLIERNPATDVK  195
             +G+  I ++ + +L    K V+  G  D+A+R+ Q    +MRYAV +D I+ NPA+D+ 
Sbjct  133  HIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDM-  191

Query  196  PSDTLRSRRKENYARLGEKELPELLRKIEAYQGGPYTRLAMQLMALTFVRTTELIAARWA  255
             +++L + +  +Y+ L    +PE+L ++ AY+G   TR+A++L  LTFVR++EL  ARW 
Sbjct  192  -AGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWD  250

Query  256  EFDLQAAEWRIPPER------------MKMKTPHIVPLSPQAVEVLKVLHTLSGGRALLF  303
            EFD++ + WR+P+ R            MKMK  HIVPLS QA+ +L  L  +SG++ LLF
Sbjct  251  EFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLF  310

Query  304  PGERDHDKPMSNNTILKALERMGY--KGRMTGHGFRGMASTILHEQGY-AHHAIELQLAH  360
            PG++D  K MS+NT+  AL  MGY  K  + GHGFR MA   L E G  +++AIE QL+H
Sbjct  311  PGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSH  370

Query  361  QERNEVSAAYNHAL-YLKERRVMMCDWANHLD  391
             ERN+V AAY H+   L ERR+M+  WA+ LD
Sbjct  371  SERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

441) S70_17360 in NC_017731


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  232 bits (865),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 165/411 (41%), Positives = 262/411 (64%), Gaps = 27/411 (6%)

Query  1    MKLTVKQIDSSKPKEKDYKLSDGGGLYLLVKTNGGKYWRLKYR--IDGKEKLLAIGVYPT  58
            MKL  +Q++++KPK+K YK++DGGGLYL V ++G+KYWR+KYR   D KE  LA+GV PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTladarrkrddakrlladGIDPNQQRKEQKQASKIDSVNTFKNIALEWYEGRKDRWSVG  118
            VTLA+AR KRD+AK+LL +GIDP+ ++KE +  +   +  TF  IA EW  + K RWS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASNK-RWSED  117

Query  119  YRDDMMDAFEKDVFPYIGNRPIAEIKPMELLEVLSIMEKRGATEKLKKVRQRCGEVWKYA  178
             R  ++  +E  +FP IG+  I ++K  +LL  +  ++  G  +  ++++QR   + +YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IITGRAEYNPAPDLASAFVPHKREHYAHLSVSELPDFLSSIDKYMGSQIVRVALRVLILT  238
            +  +  + NPA+D+A+A+   K  HY+ L+ S +P+FL+ +  Y G  + R+A+ + +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRPGELRKAEWSEINFDTKIWEIPAEK------------MKMRRPHIVPLSEQVIDLLR  286
             VR++ELR A W E++FD  +W +PA +            MKM+  HIVPLS Q + LL 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QIHPISGSYQYIFPSRTDYRKHISDMALNTMIRRMGYSGRAT--GHGFRHTMSTILHEQG  344
            Q+  ISG  + +FP+  D  K +S+ ++N+ +R MGY  ++   GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  YNTAW----IETQLAHVDKNSIRGTYNHA-QYIDGRREMLQWYADYMGALE  390
                W    IE QL+H ++N++R++Y H+ + +D RR M+QW ADY++ ++
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

442) int in NC_020409


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  232 bits (864),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 160/390 (42%), Positives = 255/390 (66%), Gaps = 19/390 (4%)

Query  18   YRVADAEGLCLEVTPTGSKLWRLRYR--YNDKGKMMALGKLTDVDLAQARDECRKWKRCL  75
            Y++AD+ GL LEV++ GSK WR++YR   + K   +A+G    V LAQAR      K+ L
Sbjct  18   YKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLL  77

Query  76   REGFDPALVKKEEDARSSGKDSFETVTREWFAKFKQKWAEQTGVRKLARLESHVFPLIGS  135
             +G+DP   +KE +A +SG  +FET++REW A  +++W+E+   R L  LE  +FP IGS
Sbjct  78   VQGIDPKTEQKEAQAENSGAYTFETIAREWHAS-NKRWSEDHRSRVLRYLELYIFPHIGS  136

Query  136  LPIDKVDAPQIRRVVLRLESLEKLHTAHRVKNIIGEIMRYAVAMGLILHNPVPDLAGVLP  195
              I ++ ++++   + ++++  K + A+R+++ +  IMRYAV  + I  NP +D+AG L+
Sbjct  137  SDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALS  196

Query  196  PTKEIHRASIVDPKGIGGLLRAIDEYQGSLVTRCALKLAPITFVRPGELRHAEWSEIDYE  255
             TK  H +++  ++ +  +L  +  Y+G ++TR A+ L+ +TFVR++ELR A W E+D++
Sbjct  197  TTKARHYPALPSSR-FPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFD  255

Query  256  GKEWRIPAEK------------MKMKRPHVVPLSRQAVEVLKEVELVTGHGGYIFPSERS  303
               WR+PA +            MKMK  H+VPLSRQA+ +L ++  ++G+   +FP+++ 
Sbjct  256  KSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHD  315

Query  304  SARPMSNNTINAALRRMGY-TKDEMTGHGFRSMASTNLNELGF-HPDHIERQLAHVEANR  361
            +++ MS+NT+N+ALR MGY TK E+ GHGFR+MA   L E G+   D IERQL+H E N 
Sbjct  316  ATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNN  375

Query  362  VRAAY-NYAEHLVERKKMMQAWADWLDGVK  390
            VRAAY + +EHL ER+ M+Q WAD LD ++
Sbjct  376  VRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

443) Fraau_3064 in NC_017033


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  231 bits (862),  Expect = 6e-62, Method: Compositional matrix adjust.
 Identities = 164/408 (41%), Positives = 270/408 (67%), Gaps = 26/408 (6%)

Query  7    KLTALAIKAAEP-GKHF---DGGGMFLHITTKG-RYWRLKYRVAG--KEKLLALGVYPEV  59
            KL A  + +A P +K +   DGGG++L++++KG +YWR+KYR ++  KE  LA+GV P V
Sbjct  2    KLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTV  61

Query  60   SLaearkrrdearrVIGEGGDPSAIRRTTKVTAVLATANTFQAVAEEWLAQHKARMAPAT  119
            +LA+AR +RDEA++++ +G DP + ++ ++     + A TF+++A EW A +K +     
Sbjct  62   TLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASNKRWSEDHR  119

Query  120  YNKAVWMLGDLVYPWLGRRPISDIEAPELLAVLRRIEARGAHTTAHRTKQRCGQVFRYAI  179
             ++ ++ L   ++P +G   I ++ +++LLA +++++A G H  A+R +QR   + RYA+
Sbjct  120  -SRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAV  178

Query  180  ATGRAKRDPSADLRGALAPLNPTSRAAITDPLRVGELLRAIDGYSGTFPVICALRLAPML  239
              +    +P++D+ GAL+  ++   +A+  + R  E+L  + +Y G      A+ L+ + 
Sbjct  179  QNDYIDSNPASDMAGALSTTKARHYPALPSS-RFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  240  FVRPGELRHAEWAEFDLDQSLWRIPAEK------------MKMRDEHLVPLPDQALAILR  287
            FVR++ELR A W EFD+D+SLWR+PA +            MKM++EH+VPL+ QA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  288  DLLPLTGPDGFLFPGERSASRPMSENTVNAALRRLGYD-KDTMTGHGFRAMASTRLNELG  346
            +L  ++G   +LFPG++ A++ MSENTVN+ALR +GYD K  + GHGFR+MA   L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  347  -WSPDVIERQLAHAERNKVRAAY-NRAQYLPERQRMMQAWADYLDSLK  392
             WS D IERQL+H+ERN+VRAAY + ++ L ER+ M+Q WADYLD ++
Sbjct  358  LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

444) YPTB3886 in NC_006155


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  230 bits (857),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 167/408 (41%), Positives = 255/408 (63%), Gaps = 27/408 (6%)

Query  1    MPLTDIKVKTAKPIDKAYKLTDGGGMYLLVKPNGSKYWRLKYRFVG--KEKMLSIGVYPD  58
            M L   +V TAKP DK+YK++DGGG+YL V ++GSKYWR+KYR  +  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQKRDEARKVLAAGGDPGEVKKADKLAQKLSSENTFEAIAREWHKQKADRWSLR  118
            V+LA+AR KRDEA+K+L  G DP   +K  +  +  S+  TFE+IAREWH     RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWH-ASNKRWSED  117

Query  119  YRDEIIDTFEKDIFPYLGRRPIAEIKPMelletlrrlekrGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP +G   I ++K  +LL  +++++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNpapdlatalatpKKTHFPFLTAEELPYFIRDLAGYTGSVITKTATQIIMQT  238
            +  +  + NPA+D+A AL+T K  H+P L +  +P F+  LA+Y G V+T+ A ++ + T
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFEKRLWEIPSE------------VIKMKRPHIVPLSEQVVELFQ  286
             VR+ ELRFARW+++DF+K LW +P+              +KMK  HIVPLS Q + L++
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  SLKPITGMYPLVFIGRNDRAKPISKESVNQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
             LK I+G   L+F G +D +K +S ++VN  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IETQLAHVDKNAIRGTYNH-AHYLEGRREMMQWYGDNLE  387
            +   W    IE QL+H ++N +R++Y H ++ L+ RR M+QW +D L+
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

445) YPTS_4103 in NC_010634


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  230 bits (857),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 167/408 (41%), Positives = 255/408 (63%), Gaps = 27/408 (6%)

Query  1    MPLTDIKVKTAKPIDKAYKLTDGGGMYLLVKPNGSKYWRLKYRFVG--KEKMLSIGVYPD  58
            M L   +V TAKP DK+YK++DGGG+YL V ++GSKYWR+KYR  +  KE  L++GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VSLADARQKRDEARKVLAAGGDPGEVKKADKLAQKLSSENTFEAIAREWHKQKADRWSLR  118
            V+LA+AR KRDEA+K+L  G DP   +K  +  +  S+  TFE+IAREWH     RWS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWH-ASNKRWSED  117

Query  119  YRDEIIDTFEKDIFPYLGRRPIAEIKPMelletlrrlekrGALEKMRKVRQRCGEVFRYA  178
             R  ++  +E  IFP +G   I ++K  +LL  +++++  G  +  ++++QR   + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNpapdlatalatpKKTHFPFLTAEELPYFIRDLAGYTGSVITKTATQIIMQT  238
            +  +  + NPA+D+A AL+T K  H+P L +  +P F+  LA+Y G V+T+ A ++ + T
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTQELRFARWEDIDFEKRLWEIPSE------------VIKMKRPHIVPLSEQVVELFQ  286
             VR+ ELRFARW+++DF+K LW +P+              +KMK  HIVPLS Q + L++
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  SLKPITGMYPLVFIGRNDRAKPISKESVNQVIELLGY--KGRLTGHGFRHTMSTILHEQG  344
             LK I+G   L+F G +D +K +S ++VN  +  +GY  K  + GHGFR      L E G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  FNSAW----IETQLAHVDKNAIRGTYNH-AHYLEGRREMMQWYGDNLE  387
            +   W    IE QL+H ++N +R++Y H ++ L+ RR M+QW +D L+
Sbjct  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

446) BCAL2961 in NC_011000


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  228 bits (848),  Expect = 7e-61, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 255/407 (63%), Gaps = 15/407 (3%)

Query  1    MPLTDTTIRNTKPAEKPVKLFDGGGLFLLVTPAGQRYWRLKYR--AAGKEKLLALGVYPD  58
            M L    +  +KP +K  K+ DGGGL+L V++ G +YWR+KYR  +  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTlaaarrkrdeareklaaGIDPGEAKKAEKRTARLSAENSFEAVAREWHIKYAPTWSES  118
            VTLA AR KRDEA+  L  GIDP   +K  +     S+  +FE++AREWH      WSE 
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHAS-NKRWSED  117

Query  119  HGSRILRRLEVDAFPWIGSKPIAELAPPDVLEVLRRVEKRGALETAHRLHANVSQVCRYA  178
            H SR+LR LE+  FP IGS  I +L  +++L  +++V+  G  + A+RL+  V+ + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VATGRAQRDVTADLRGALPPVQQEHMAAVTDPKQVAELLRSIDGYQGTFPVLCALRLFPL  238
            V  +  + + ++D+ GAL+  +  H +A+  ++  +E+L  + +Y+G      A+ L  L
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSR-FPEFLARLAAYRGRVMTRIAVELSLL  236

Query  239  LFQRPGELRAAEWSEFDLDASTWEIPSER-----MKRTKQGKASGGAHIVPLSAQAVAIL  293
             F R++ELR A W EFD+D S W +P+ R     ++ + +G      HIVPLS QA+ +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  294  RDLHALTGNSRFLFPSVRTKDRPMSDNTINGALRRLGYDGDT-MTGHGFRAMARTILDEV  352
             +L  ++G+  +LFP+ +   + MS+NT+N+ALR +GYD  T + GHGFR+MAR  L+E 
Sbjct  297  EQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGES  356

Query  353  LGV-PVAIVEAQLAHAVKDPLGRAYNRTA-HLPQRREMMQRWADYLD  397
             G+ +   +E QL+H+ ++ +  AY +T+ HL +RR M+Q+WADYLD
Sbjct  357  -GLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

447) PAU_01009 in NC_012962


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  227 bits (846),  Expect = 9e-61, Method: Compositional matrix adjust.
 Identities = 176/414 (43%), Positives = 270/414 (66%), Gaps = 30/414 (7%)

Query  1    MKLTARQIDTAKPKDKSYKLSDGGGMYLEIFPNGSKCWRLKYRFAG--KEKRLAFGTYPT  58
            MKL ARQ++TAKPKDK+YK++DGGG+YLE+ ++GSK WR+KYR ++  KE RLAFG  PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLaearkkredakkILANGNDPGLVKRQEKREKALIINNSFEKIALEWHTYKLPNWSKG  118
            VTLA+AR KR++AKK+L +G DP   +++ + E++     +FE IA EWH+ +   WS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENS--GAYTFETIAREWHASN-KRWSED  117

Query  119  YAEDLLEGFTKDIFPFIGKHAITDIKPLDMLTVLRKMEQRGVLDKLKKIRQACNQVFRYA  178
                +L  +   IFP IG   I ++K  ++L+ ++K++  G  D  ++++Q    + RYA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IVTGRAEYNPTAELAGALATPKAKHFPHLNVDELPAFLQALSFYSGSKITQIAtkllllt  238
            +  +  + NP++++AGAL+T KA+H+P L    +P FL  L+ Y G  +T+IA  L LLT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  glrtielRASTWTEIDFDKAIWEIPQER------------MKMRRPHIVPLSEQalallk  286
             +R+ ELR + W E+DFDK++W +P  R            MKM+  HIVPLS QA+ LL 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  elaaITGRFNFVFHGRNDASKPMSEAAINAINQVLKRIGYDGRAT--GHGFRHTMSTILH  344
            +L  I+G  +++F G +DA+K MSE ++N+    L+ +GYD ++   GHGFR      L 
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNS---ALRAMGYDTKTEVCGHGFRTMARGALG  354

Query  345  EQGYNTAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDMLE  393
            E G    W    IE QL+H ++N++R++Y H ++ LD RR M+QW ADY+D+++
Sbjct  355  ESGL---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

448) NAL212_2545 in NC_015222


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  226 bits (844),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 169/409 (42%), Positives = 260/409 (64%), Gaps = 21/409 (5%)

Query  1    MKLTDTAIKKAKPQAKPYRIADGGGMYIEVKPNGAKYWRMAYR--FADKQKTLALGVYPD  58
            MKL    +  AKP+ K Y++ADGGG+Y+EV ++G+KYWRM YR     K+  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLADARDRRNEARKLLANGADPGAVkqsqkkqakiaasnsFELIAREFHSLKTPMWSTN  118
            VTLA+AR +R+EA+KLL +G DP +  + +  QA  +++ +FE IARE H+     WS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKT--EQKEAQAENSGAYTFETIAREWHA-SNKRWSED  117

Query  119  HAADWIKTLEREIFPKFGNYPISEIDAPAVLDAIRAIESRDAHEvaarvlqrvravcaYA  178
            H +  ++ LE  IFP +G+  I ++ ++ +L +I+ +++ + H+VA R+ QRV A+  YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  IATGRARHNPASEIKGALAPQPKIKHFAALTEKELPDFLRAVAAYPCYPLTKYATALLML  238
            +  +    NPAS++ GAL+   K +H++AL    +P+FL  +AAY    +T+ A  L +L
Sbjct  178  VQNDYIDSNPASDMAGALST-TKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLL  236

Query  239  TFVRTGEVRGAKWCEFDLDAKLWKIPAER------------MKSREPHIVPLAKQAIEIL  286
            TFVR++E+R A+W EFD+D  LW++PA R            MK +E HIVPL++QA+ +L
Sbjct  237  TFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLL  296

Query  287  GELHPLTGHGEHLFPNRTGNGKVISENTVLKVIERLGY--KGRMTGHGFRTIASTYLNGV  344
             +L  ++G+ E LFP   +  KV+SENTV   +  +GY  K  + GHGFRT+A   L   
Sbjct  297  EQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGES  356

Query  345  GMIRPDVIEAQLAHTEanatraa-ynranyMEYRAAMMQFWADTLDAME  392
            G+   D IE QL+H+E N  RAA  + ++ ++ R  M+Q WAD LD ++
Sbjct  357  GLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

449) Nit79A3_1833 in NC_015731


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  222 bits (828),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 169/414 (41%), Positives = 261/414 (64%), Gaps = 31/414 (7%)

Query  1    MKLTDpeikaakpkekpYSLPDGHGLVLLVQPSGAKWWRYRYRFNGTAK--MLSMGVYPD  58
            MKL   ++ +AKPK+K Y ++DG GL L V + G+K WR +YR  +  K   L+ GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLKEARNQQARFKELLAQSIDPSLHRQEQKQQQAIATEN-SFESIARLWW---NQWSAA  114
            VTL +AR ++   K LL Q+IDP   + EQK+ QA  +   +FE+IAR W    ++WS  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDP---KTEQKEAQAENSGAYTFETIAREWHASNKRWSED  117

Query  115  RNQRHADYVIRRLEADIFPVIGRKPVTELSAPMLLMAIKKIEARGALDIAKRALTTCNQI  174
            +  R    V+R LE  IFP IG   + +L ++ LL +IKK++A G  D+A+R       I
Sbjct  118  HRSR----VLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAI  173

Query  175  MRYAVAHGLAERNPAADIKPSDVLKPTTKTNYARLDQKELPELLRKIDAYDGQPLTKLAL  234
            MRYAV ++  + NPA+D+  ++ L  T   +Y+ L    +PE+L ++ AY G+ +T++A+
Sbjct  174  MRYAVQNDYIDSNPASDM--AGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAV  231

Query  235  QLMALTFVRTSELIGAKWDEIELDNKQWRIPAE------------CMKMKTPHIVPLSNQ  282
            +L  LTFVR+SEL  A+WDE+++D+  WR+PA              MKMK  HIVPLS Q
Sbjct  232  ELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQ  291

Query  283  AIAVLGKIKELAADQILLFPSERRDGNSMSNNTILYALYRLGYHSR--MTGHGFRGIAST  340
            A+ +L ++K++++D+ LLFP+++   + MS+NT+  AL  +GY+++  + GHGFR +A  
Sbjct  292  AMVLLEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARG  351

Query  341  ILHERGY-SHEHIELQLAHAKRDQVSASYNHAL-YLEPRARMMQDWADYLEAIR  392
             L E G  S++ IE QL+H+ R++V A+Y H+   L+ R  M+Q WADYL+ I+
Sbjct  352  ALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQ  405

450) LFML04_0012 in NC_018649


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  221 bits (822),  Expect = 7e-59, Method: Compositional matrix adjust.
 Identities = 149/360 (42%), Positives = 239/360 (67%), Gaps = 18/360 (5%)

Query  2    GVYPETSLrearerrdeakkkieSGIDPSHARKAKKESDSGADTFETIAREWFEKFSPTW  61
            GV P  +L +AR +RDEAKK +  GIDP   +K  +  +SGA TFETIAREW    +  W
Sbjct  56   GVWPTVTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHAS-NKRW  114

Query  62   SPSHGDRIIRRLERDIFPWLGKRSIKDIKAPEFLAVLRRIESRGAVETAHRASQNCGQVF  121
            S  H  R++R LE  IFP +G   I+++K++++LA ++++++ G  + A+R  Q    + 
Sbjct  115  SEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIM  174

Query  122  RYAAAMGRTEGDPSGDLRGAIPPTTTKHHASITDPKEIGGLLRAIDSYEGGLVVRCALKL  181
            RYA   +  +++P++D+ GA++ T ++H +++  ++ +  +L  + +Y G ++ R A+ L
Sbjct  175  RYAVQNDYIDSNPASDMAGALSTTKARHYPALPSSR-FPEFLARLAAYRGRVMTRIAVEL  233

Query  182  APLVFVRPGELRRAEWSEIDFEKMEWRIPAEK------------MKMREQHIVPLSRQAL  229
            + L FVR++ELR A W E+DF+K  WR+PA +            MKM+E+HIVPLSRQA+
Sbjct  234  SLLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAM  293

Query  230  GILRELQPLTGEGKYLFPSPRSWDRPMSENAVLAALRRMGYSG-DQMTGHGFRSMASTIL  288
             +L +L+ ++G+   LFP+ +   + MSEN+V +ALR MGY    ++ GHGFR+MA   L
Sbjct  294  VLLEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGAL  353

Query  289  IEQG-WNRDAIERQLAHAERDEIRAAY-NYAQHLPERRKMMQAWANYLDELRIDGQILPF  346
             E G W+ DAIERQL+H+ER+++RAAY + ++HL ERR M+Q WA+YLD ++ + +I P+
Sbjct  354  GESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYE-HITPY  412

451) Galf_2041 in NC_014394


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  221 bits (822),  Expect = 8e-59, Method: Compositional matrix adjust.
 Identities = 159/388 (41%), Positives = 247/388 (64%), Gaps = 25/388 (6%)

Query  22   DGDGMYIEVMPSGSKYWRLKYRYAG--KEKRLALGVYPEVSLKdarerrdaarKLIANGT  79
            DG+G+Y+EV + GSKYWR+KYR ++  KE RLA+GV P V+L +AR +RD A+KL+ +G 
Sbjct  22   DGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGI  81

Query  80   DP-GEAKQAQKREGKIAAANTFEAVAREWVENRSNDWTAGHKALTLRTLEQDAFPSIGRR  138
            DP  E K+AQ   +  ++A TFE++AREW +  ++ W+ +H++  LR LE   FP IG  
Sbjct  82   DPKTEQKEAQ---AENSGAYTFETIAREW-HASNKRWSEDHRSRVLRYLELYIFPHIGSS  137

Query  139  PIAEISSSEVLATVRAIEKRGALEIAGRVLQRCSAVFRYAIATDRCKNNPAFKMSEALKS  198
             I ++ +S++LA ++ ++  G  ++A R+ QR +A+ RYA+  D   +NPA  M+ AL +
Sbjct  138  DIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALST  197

Query  199  PTRSHYNTIEKGGFPKLLRDIDGYQGSPMTTYILQLMALTFTRTGELVNAEWKEIDLDRA  258
                HY ++  + FP +L  + +Y+G  MT   ++L  LTF R++EL  A W E+D+D++
Sbjct  198  TKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKS  257

Query  259  EWLIPAER------------MKMRRPHLVPLSVQAVAVFREAAKLSGDRVHVFPNRNDPS  306
             W +PA R            MKM+  H+VPLS QA+ ++ +  ++SGD+  +FP  +D++
Sbjct  258  LWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDAT  317

Query  307  QPASNAIILRALGRMGYTGK--MTGHGFRSAASTMLNENKSKWGIHRDTIELQLAHVEKN  364
            +  S+  +  AL  MGY  K  + GHGFR+ A   L E+ + W+   D+IE QL+H E+N
Sbjct  318  KVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGES-GLWS--DDAIERQLSHSERN  374

Query  365  ASRAAY-NFAEYLDERRTMMQQWADHLD  391
              RAAY + +E LDERR M+Q WAD LD
Sbjct  375  NVRAAYIHTSEHLDERRLMVQWWADYLD  402

452) Fraau_2605 in NC_017033


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  220 bits (819),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 157/388 (41%), Positives = 247/388 (64%), Gaps = 21/388 (5%)

Query  23   DGGGLHLKVEATGRKYWRYDFRIAG--KPDTFAVGVYPKVTLAEARLRHAEASALVSQGI  80
            DGGGL L V A G KYWR  +R ++  K D +A GV P VTLA+AR ++ EA  L+ QGI
Sbjct  22   DGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGI  81

Query  81   NPkahkrakqaaavvanantfqavaDEWMAQQKPKMAKATYDKAMWMLADLVYPWLGKRP  140
            +PK++++  QA    A +    A   EW A +K + +     + ++ L   ++P +G   
Sbjct  82   DPKTEQKEAQAENSGAYTFETIAR--EWHASNK-RWSEDHRSRVLRYLELYIFPHIGSSD  138

Query  141  ISEIDAPELLAVLRRIEERGANETAHRTKQRCGQIFRYAIATGRAKHDPSGDLRGALAPP  200
            I ++ +++LLA +++++  G ++ A+R +QR   I RYA+  +    +P++D+ GAL+  
Sbjct  139  IRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTT  198

Query  201  ITKSRAAITDPQKVGELLRAIDGYSGSFSVICALRLAPMLFVRPGELRHAEWAEFDLDQG  260
             ++  +A+  + +  E+L  + +Y G      A+ L+ + FVR++ELR A W EFD+D++
Sbjct  199  KARHYPALPSS-RFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKS  257

Query  261  LWRIPAEK------------MKMRDEHLVPLPDQALAILRDLLPLTGPDGYLFPGERSAS  308
            LWR+PA +            MKM++EH+VPL+ QA+ +L +L  ++G    LFPG++ A+
Sbjct  258  LWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDAT  317

Query  309  RPMSENTVNAALRRLGYD-KDTMTGHGFRAMASTRLNELG-WSPDVIERQLAHAERNKVR  366
            + MSENTVN+ALR +GYD K  + GHGFR+MA   L E G WS D IERQL+H+ERN+VR
Sbjct  318  KVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVR  377

Query  367  AAY-NRAQYLPERQRMMQAWADYLDSLK  393
            AAY + ++ L ER+ M+Q WADYLD ++
Sbjct  378  AAYIHTSEHLDERRLMVQWWADYLDIIQ  405

453) XCV2217 in NC_007508


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  218 bits (813),  Expect = 4e-58, Method: Compositional matrix adjust.
 Identities = 164/409 (41%), Positives = 268/409 (66%), Gaps = 24/409 (5%)

Query  1    MPLTDTAIRKTKPGAVPLKLRDGGGLYLLMRPDGARWWRWDYRRPVTGKRNTLSLGTYPD  60
            M L    +  +KP     K+ DGGGLYL + + G++ WR  YRRP   K + L++G  P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  61   TGladarekrdaarkllaaGVDPGEQRKQAKQERAALVDAAGETFEVVAREWMARQTVAR  120
              LA+AR KRD A+KLL  G+DP  ++K+A+ E     ++++ TFE +AREW A +   +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAE-----NSGAYTFETIAREWHASNK-RW  114

Query  121  VTAEKNR--WLLETFLFPEIGSRPIGEITPRELLDALRKIEATGKLETAARAKIKAGQVF  178
               +++R  + LE ++FP+IGS  I ++   +LL +++K++A+GK + A R + +   + 
Sbjct  115  SEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIM  174

Query  179  RYAMLEGKAEIDPTaslrgalkaakarhhaaVTEPAKIGQLLRAIEGFSGQPVTHAALKL  238
            RYA+ ++  + +P++ + GAL ++KARH +A+  ++++ ++L  + ++ G+ +T+ A+ L
Sbjct  175  RYAVQNDYIDSNPASDMAGALSTTKARHYPALP-SSRFPEFLARLAAYRGRVMTRIAVEL  233

Query  239  APLVFVRPGELRAAEWAEIDLDAAMWRIRPER------------MKMKAAHLVPLSSQAV  286
            + L FVR++ELR A W E+D+D ++WR+ + R            MKMK  H+VPLS QA+
Sbjct  234  SLLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAM  293

Query  287  AILRDLHALTGGGHHVFPGLR-PNRPMSENTVNAALRALGYSGD-EMTGHGFRSMAATRL  344
             +L +L  ++G+ + +FPG + + + MSENTVN+ALRA+GY    E+ GHGFR+MA   L
Sbjct  294  VLLEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGAL  353

Query  345  NELG-WNADAVERQLAHAETNKVREAYTHAAQYLHERVRMMQAWADYLD  392
             E G W+ DA+ERQL+H+E N+VR AY H+++ L+ER  M+Q WADYLD
Sbjct  354  GESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

454) NCGM2_0360 in NC_017549


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  218 bits (811),  Expect = 6e-58, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 265/407 (66%), Gaps = 21/407 (5%)

Query  1    MPLTDSAIKTAKPKEKPYKLSDAQGLYLLVNPNGSKLWRLKYR--VGGKEKGLAFGAYPT  58
            M L    + TAKPK+K YK++D+ GLYL V+++GSK WR+KYR   + KE  LAFG  PT
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   VTLqqarqrrdearqqlaqGEDPGeqkkaskqakkvseLTFETLAREWYAYNAPRWAEST  118
            VTL QAR +RDEA++ L QG DP    +   QA + +  TFET+AREW A +  RW+E  
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDP-KTEQKEAQAENSGAYTFETIAREWHA-SNKRWSEDH  118

Query  119  AYKAKLYLENDLIPGIGSRPIAAITRPDLVDLVRKVEARGTLNAAGKIRQWLHQIYRYAL  178
              +   YLE  ++P IGS  I  +  ++L+  ++KV+A G  + A +++Q++  I RYA+
Sbjct  119  RSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAV  178

Query  179  AKGVVESNPATDLDVVaapakaarhhphlpFAELPELLEKLATAKLHTLTRSAIRLLMLT  238
             ++ ++SNPA+D+    + +KA +  +  + + +PE+L +LA+ + + +TR A+ L +LT
Sbjct  179  QNDYIDSNPASDMAGALSTTKARHYPALPS-SRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  AVRPGELRAAPWCEFDLDTATWTIPAAR------------MKARRSHVVPLPRQAVTILR  286
             VR++ELR A W EFD+D + W +PA R            MK +  H+VPL+RQA+ +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  QLHELTGSYSLLFPGQQNAERPMSENTINKALRLVGYGGRQT--GHGFRHLLSTELNSRG  344
            QL +++G   LLFPG+++A + MSENT+N ALR +GY+ +    GHGFR +    L   G
Sbjct  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357

Query  345  Y-NRDWIERQLAHGDKDEIRGTYNHAT-YLEQRRGMMQAWADSIDAL  389
              + D IERQL+H++++++R++Y H++  L++RR M+Q WAD +D +
Sbjct  358  LWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404

455) XALc_1632 in NC_013722


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  216 bits (805),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 153/382 (41%), Positives = 251/382 (66%), Gaps = 23/382 (6%)

Query  1    MRPDGARWWRWDYRRPNTGKRNTLSLGTYPDTGladardkrdaarkllaaGVDPGEQRKR  60
            + + G++ WR  YRRP+  K + L++G  P   LA+AR KRD A+KLL  G+DP  ++K 
Sbjct  30   VSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKTEQKE  89

Query  61   AKEQAAMVAPAGETFETVARAWMARQTVARVTAEKNR--WLLETFLFPEIGSRPIGEITP  118
            A+ + +    ++ TFET+AR W A +   +   +++R  + LE ++FP+IGS  I ++  
Sbjct  90   AQAENS----GAYTFETIAREWHASNK-RWSEDHRSRVLRYLELYIFPHIGSSDIRQLKT  144

Query  119  RELLDALRKIEATGKLETAGRAKIKAGQVFRYAMLEGKAEIDPTASLRGALKTVKARHHA  178
             +LL +++K++A+GK + A R + +   + RYA+ ++  + +P++ + GAL T KARH +
Sbjct  145  SHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYP  204

Query  179  AVTDPVKIGQLLRAIEGFIGQPVTHAALKLAPLVFVRPGELRAAEWGEIDLDAAMWRIRP  238
            A+  + ++ ++L  + ++ G+ +T+ A+ L+ L FVR++ELR A W+E+D+D ++WR+ +
Sbjct  205  ALPSS-RFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPA  263

Query  239  ER------------MKMKAAHLVPLSSQAVAILRDLHALTGGGPHVFPGLR-PNRPMSEN  285
             R            MKMK  H+VPLS QA+ +L +L  ++G+   +FPG + + + MSEN
Sbjct  264  KREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSEN  323

Query  286  TINSALRALGYSGD-EMTGHGFRSMAATRLNEMG-WNADAIERQLAHAETNKVREAYTHA  343
            T+NSALRA+GY    E+ GHGFR+MA   L E G W+ DAIERQL+H+E N+VR AY H+
Sbjct  324  TVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHT  383

Query  344  AQYLPERVRMMQAWADYLDSLR  365
            ++ L ER  M+Q WADYLD ++
Sbjct  384  SEHLDERRLMVQWWADYLDIIQ  405

456) Pnap_2643 in NC_008781


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  208 bits (774),  Expect = 5e-55, Method: Compositional matrix adjust.
 Identities = 158/390 (41%), Positives = 256/390 (66%), Gaps = 17/390 (4%)

Query  21   KHTDGGGMYLLVT-KAGKYWRMNYRFAGKRKT--LALGVYPAVSLAEARQGRDKARKLLA  77
            K +DGGG+YL V+ K++KYWRM+YR ++ +K   LA+GV P+V+LA+AR  RD A+KLL 
Sbjct  19   KMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLV  78

Query  78   QDIDPSAAKQEDRQatataaantfeavaREFHALKAGGWSEGHATKWLRMNELYLFPHIG  137
            Q+IDP + ++E +  +  ++A TFE++ARE HA     WSE+H ++ LR  ELY+FPHIG
Sbjct  79   QGIDPKTEQKEAQ--AENSGAYTFETIAREWHA-SNKRWSEDHRSRVLRYLELYIFPHIG  135

Query  138  TLPLSTIKAPTLLAALRKVEKKGILSTAQDLQAMAGQVFRYGVQTGRCESNPGVDLKGAL  197
            +  +  +K++ LLA+++KV+  G    AQ LQ     + RY+VQ +  +SNP+ D+ GAL
Sbjct  136  SSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGAL  195

Query  198  QPHIAKHFAAILDPVEAGAMLRAIDAYTGQPETLAALKLSALFFQRPGNIRAMEWAWIDL  257
                A+H++A L +      L  + AY G+  T  A+ LS L F R++++R   W  +D+
Sbjct  196  STTKARHYPA-LPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDF  254

Query  258  DGQMLTIPA-----KSMKSSKHEKANGKPHTVPLARQALDVLKSIKQLTGHGRYVFPGAR  312
            D  +  +PA     K+++ S +       H VPL+RQA+ +L  +KQ++G+   +FPG +
Sbjct  255  DKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDH  314

Query  313  TGERPMSDGTINAALRRLDYGNNEHV-AHGFRAMARTMMAERLSGI-PQDMVEAQLGHGK  370
             + + MS+ T+N+ALR ++Y+ + +V +HGFR+MAR  ++E  SG+ ++D +E QL+H+ 
Sbjct  315  DATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGE--SGLWSDDAIERQLSHSE  372

Query  371  KGPLGSAY-DRSEYLPQRQQMMQTWADYLD  399
            +  + +AY + SE L +R+ M+Q WADYLD
Sbjct  373  RNNVRAAYIHTSEHLDERRLMVQWWADYLD  402

457) XBJ1_1315 in NC_013892


> NC_003198_P10|2|G1|16763282|NP_458899.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|249..1514|STY4821|-|integrase
Length=421

 Score =  205 bits (761),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 130/307 (43%), Positives = 199/307 (65%), Gaps = 17/307 (5%)

Query  1    MKLTARQVDTAKPKEKPYKLADGGGLYLLVNPNGARYWRLKYRIAG--KEKLLALGVYPD  58
            MKL ARQV+TAKPK+K YK+ADGGGLYL V+++G++YWR+KYR ++  KE  LA+GV P 
Sbjct  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60

Query  59   ISLSDARTKRNEARRTLSDGNDPIeekkaekaakaFAVSNSFESIAIEWHEHKRPNWSKG  118
            ++L++AR+KR+EA++ L +G DP  E+K  +A +  + + +FE+IA EWH  ++  WS +
Sbjct  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAEN--SGAYTFETIAREWHASNK-RWSED  117

Query  119  YAEDILEYLKKDIFPYIGKRAVTEIKPAEMLAVLRKMEQRGVLDKLKKTRQACRQIFTYA  178
                +L YL   IFP IG   + ++K +++LA ++K++  G  D  ++ +Q    I  YA
Sbjct  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177

Query  179  VITGRAEFNPVTDLASALKAPKQKHFSHLLADQMNAFLVALAGYSGSEVTQSATRLLMLT  238
            V  +  + NP +D+A+AL + K +H++ L + +   FL  LA+Y G  +T+ A  L +LT
Sbjct  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237

Query  239  GVRTIELRESEWTEFDFDKDIWQIPAER------------MKMRRPHIVPLSNQVKAILI  286
             VR+ ELR + W EFDFDK +W++PA R            MKM+  HIVPLS Q   +L 
Sbjct  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297

Query  287  KLHSITG  293
            +L  I+G
Sbjct  298  QLKQISG  304