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PAthogenisity Island DataBase (PAI DB)

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Homologs of YPO0256 gene of NC_003143_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) A1122_03865
( YP_005520468.1 )

two component system sensor kinase SsrA

NC_017168
(Yersinia pestis A1122)

0.0

100

2) YPA_4028
( YP_653934.1 )

two-component sensor/regulator

NC_008150
(Yersinia pestis Antiqua)

0.0

100

3) YPO0256
( YP_002345336.1 )

two-component sensor/regulator

NC_003143
(Yersinia pestis CO92)

0.0

100

4) YPD4_0223
( YP_005503435.1 )

two-component sensor/regulator

NC_017154
(Yersinia pestis D106004)

0.0

100

5) YPD8_0228
( YP_005507311.1 )

two-component sensor/regulator

NC_017160
(Yersinia pestis D182038)

0.0

100

6) YPC_0754
( YP_005622738.1 )

two-component sensor/regulator

NC_017265
(Yersinia pestis Harbin 35)

0.0

100

7) YPN_3413
( YP_649340.1 )

two-component sensor/regulator

NC_008149
(Yersinia pestis Nepal516)

0.0

100

8) YPDSF_3715
( YP_001165038.1 )

two-component sensor/regulator

NC_009381
(Yersinia pestis Pestoides F)

0.0

100

9) YPZ3_0221
( YP_003566393.1 )

two-component sensor/regulator

NC_014029
(Yersinia pestis Z176003)

0.0

100

10) baeS1
( NP_991803.1 )

two-component sensor/regulator

NC_005810
(Yersinia pestis 91001)

0.0

11) y0513
( NP_667851.1 )

two-component sensor/regulator

NC_004088
(Yersinia pestis KIM)

0.0

12) YPTB0311
( YP_068857.1 )

two-component sensor/regulator

NC_006155
(Yersinia pseudotuberculosis IP 32953)

0.0

13) YPTS_0335
( YP_001870781.1 )

multi-sensor hybrid histidine kinase

NC_010634
(Yersinia pseudotuberculosis PB1/+)

0.0

14) YPK_3918
( YP_001722636.1 )

multi-sensor hybrid histidine kinase

NC_010465
(Yersinia pseudotuberculosis YPIII)

0.0

15) YpsIP31758_3832
( YP_001402786.1 )

sensor histidine kinase/response regulator EsrA

NC_009708
(Yersinia pseudotuberculosis IP 31758)

0.0

16) YpAngola_A3944
( YP_001608241.1 )

two-component sensor/regulator

NC_010159
(Yersinia pestis Angola)

0.0

100

17) YE105_C0310
( YP_004296511.1 )

Multi-sensor hybrid histidine kinase

NC_015224
(Yersinia enterocolitica 105.5R(r))

0.0

18) Y11_35181
( YP_006007017.1 )

secretion system regulator: Sensor component

NC_017564
(Yersinia enterocolitica Y11)

0.0

19) HDEF_0149
( YP_002923070.1 )

two-component sensor/regulator

NC_012751
(Candidatus Hamiltonella defensa T5A)

0.0

20) PAU_03782
( YP_003042611.1 )

two-component sensor/regulator precursor

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

0.0

21) SG1280
( YP_454960.1 )

two-component sensor kinase

NC_007712
(Sodalis glossinidius morsitans)

0.0

22) SBOV13911
( YP_008505259.1 )

hypothetical protein

NC_022241
(Salmonella enterica 3114)

2e-171

23) CFSAN002050_13355
( YP_008260582.1 )

transcriptional regulator

NC_021818
(Salmonella enterica CFSAN002050)

3e-171

24) SARI_01589
( YP_001570625.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

6e-171

25) SPAB_01934
( YP_001588157.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

8e-171

26) SeAg_B1779
( YP_002146648.1 )

secretion system regulator:Sensor component

NC_011149
(Salmonella enterica SL483)

2e-170

27) SSPA1359
( YP_002142198.1 )

two-component sensor kinase

NC_011147
(Salmonella enterica AKU12601)

4e-170

28) ssrA
( YP_150712.1 )

two-component sensor kinase

NC_006511
(Salmonella enterica ATCC 9150)

4e-170

29) CFSAN001992_04630
( YP_007470684.1 )

two component system sensor kinase SsrA

NC_020307
(Salmonella enterica CFSAN001992)

1e-169

30) SeSA_A1490
( YP_002114407.1 )

secretion system regulator:Sensor component

NC_011094
(Salmonella enterica CVM19633)

1e-169

31) STBHUCCB_13520
( YP_005216910.1 )

Secretion system regulator:Sensor component

NC_016832
(Salmonella enterica P-stx-12)

1e-168

32) ssrA
( NP_805063.1 )

two-component sensor kinase

NC_004631
(Salmonella enterica Ty2)

1e-168

33) TY21A_06410
( YP_007925586.1 )

putative two-component sensor kinase

NC_021176
(Salmonella enterica Ty21a)

1e-168

34) ssrA
( NP_456136.1 )

putative two-component sensor kinase

NC_003198
(Salmonella enterica CT18)

3e-168

35) SEEB0189_12575
( YP_008308830.1 )

transcriptional regulator

NC_021844
(Salmonella enterica CFSAN000189)

1e-165

36) SNSL254_A1505
( YP_002040646.1 )

secretion system regulator:Sensor component

NC_011080
(Salmonella enterica SL254)

3e-165

37) SN31241_24640
( YP_008360380.1 )

Secretion system regulator:Sensor component

NC_021902
(Salmonella enterica USMARC-S3124.1)

3e-165

38) SEEH1578_16195
( YP_008247298.1 )

two component system sensor kinase SsrA

NC_021810
(Salmonella enterica 41578)

4e-165

39) SU5_02009
( YP_006087643.1 )

Secretion system regulator: Sensor component

NC_017623
(Salmonella enterica B182)

4e-165

40) CFSAN002069_02040
( YP_008249268.1 )

transcriptional regulator

NC_021812
(Salmonella enterica CFSAN002069)

4e-165

41) SeHA_C1527
( YP_002045397.1 )

secretion system regulator:Sensor component

NC_011083
(Salmonella enterica SL476)

4e-165

42) SE451236_12825
( YP_008265591.1 )

transcriptional regulator

NC_021820
(Salmonella enterica 08-1736)

7e-164

43) ssrA
( YP_005237261.1 )

sensor kinase

NC_016856
(Salmonella enterica 14028S)

7e-164

44) spiR
( YP_005396792.1 )

two-component sensor kinase

NC_017046
(Salmonella enterica 798)

7e-164

45) CFSAN001921_10185
( YP_008255411.1 )

transcriptional regulator

NC_021814
(Salmonella enterica CFSAN001921)

7e-164

46) ssrA
( NP_460357.1 )

sensor kinase

NC_003197
(Salmonella enterica LT2)

7e-164

47) spiR
( YP_005181236.1 )

putative two-component sensor kinase

NC_016810
(Salmonella enterica SL1344)

7e-164

48) STMDT12_C14080
( YP_005247104.1 )

sensor kinase

NC_016860
(Salmonella enterica T000240)

7e-164

49) STU288_03280
( YP_007901761.1 )

two component system sensor kinase SsrA

NC_021151
(Salmonella enterica U288)

7e-164

50) ssrA
( YP_005251896.1 )

sensor kinase

NC_016863
(Salmonella enterica UK-1)

7e-164

51) SeD_A1949
( YP_002215737.1 )

secretion system regulator:Sensor component

NC_011205
(Salmonella enterica CT_02021853)

1e-163

52) STMMW_13971
( YP_005232451.1 )

putative two-component sensor kinase

NC_016854
(Salmonella enterica D23580)

1e-163

53) ssrA
( YP_002243753.1 )

two-component sensor kinase

NC_011294
(Salmonella enterica P125109)

1e-163

54) ssrA
( YP_005242293.1 )

sensor kinase

NC_016857
(Salmonella enterica ST4/74)

1e-163

55) ssrA
( YP_216400.1 )

secretion system regulator:sensor component

NC_006905
(Salmonella enterica SC-B67)

3e-163

56) ssrA
( YP_002637895.1 )

two-component sensor kinase

NC_012125
(Salmonella enterica RKS4594)

4e-163

57) ssrA
( YP_002226693.1 )

two-component sensor kinase

NC_011274
(Salmonella enterica 287/91)

1e-162

58) ssrA
( YP_008480881.1 )

putative two-component sensor kinase

NC_022221
(Salmonella enterica CDC1983-67)

2e-162

59) ssrA
( YP_005212419.1 )

putative two-component sensor kinase

NC_016831
(Salmonella enterica RKS5078)

2e-162

60) I137_05565
( YP_008380623.1 )

transcriptional regulator

NC_021984
(Salmonella enterica S06004)

2e-162

61) Sbal175_2422
( YP_006020979.1 )

integral membrane sensor hybrid histidine kinase

NC_017571
(Shewanella baltica BA175)

3e-134

62) Sbal117_2059
( YP_006037290.1 )

multi-sensor hybrid histidine kinase

NC_017579
(Shewanella baltica OS117)

8e-134

63) Sbal_1944
( YP_001050317.1 )

integral membrane sensor hybrid histidine kinase

NC_009052
(Shewanella baltica OS155)

8e-134

64) Sbal195_2247
( YP_001554675.1 )

integral membrane sensor hybrid histidine kinase

NC_009997
(Shewanella baltica OS195)

1e-131

65) Sbal678_2256
( YP_005273463.1 )

multi-sensor hybrid histidine kinase

NC_016901
(Shewanella baltica OS678)

1e-131

66) SVI_2262
( YP_003557011.1 )

sensor histidine kinase/response regulator

NC_014012
(Shewanella violacea DSS12)

1e-118

• Sequence Alignments

1) A1122_03865 in NC_017168


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score = 1362 bits (5169),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 939/939 (100%), Positives = 939/939 (100%), Gaps = 0/939 (0%)

Query  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60
            MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ
Sbjct  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60

Query  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120
            FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG
Sbjct  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120

Query  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180
            TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP
Sbjct  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180

Query  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240
            QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN
Sbjct  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240

Query  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyqlp  300
            QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP
Sbjct  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP  300

Query  301  falailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360
            FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN
Sbjct  301  FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360

Query  361  NLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGAV  420
            NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV
Sbjct  361  NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV  420

Query  421  ELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQA  480
            ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA
Sbjct  421  ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA  480

Query  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540
            MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR
Sbjct  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540

Query  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600
            QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS
Sbjct  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600

Query  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660
            EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA
Sbjct  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660

Query  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720
            LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV
Sbjct  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720

Query  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780
            TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS
Sbjct  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780

Query  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVdlspqlsepqplldladsa  840
            PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA
Sbjct  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA  840

Query  841  lslKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900
            LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE
Sbjct  841  LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900

Query  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939
            TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK
Sbjct  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939

2) YPA_4028 in NC_008150


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score = 1362 bits (5169),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 939/939 (100%), Positives = 939/939 (100%), Gaps = 0/939 (0%)

Query  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60
            MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ
Sbjct  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60

Query  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120
            FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG
Sbjct  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120

Query  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180
            TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP
Sbjct  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180

Query  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240
            QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN
Sbjct  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240

Query  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyqlp  300
            QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP
Sbjct  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP  300

Query  301  falailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360
            FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN
Sbjct  301  FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360

Query  361  NLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGAV  420
            NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV
Sbjct  361  NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV  420

Query  421  ELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQA  480
            ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA
Sbjct  421  ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA  480

Query  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540
            MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR
Sbjct  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540

Query  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600
            QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS
Sbjct  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600

Query  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660
            EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA
Sbjct  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660

Query  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720
            LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV
Sbjct  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720

Query  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780
            TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS
Sbjct  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780

Query  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVdlspqlsepqplldladsa  840
            PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA
Sbjct  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA  840

Query  841  lslKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900
            LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE
Sbjct  841  LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900

Query  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939
            TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK
Sbjct  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939

3) YPC_0754 in NC_017265


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score = 1362 bits (5169),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 939/939 (100%), Positives = 939/939 (100%), Gaps = 0/939 (0%)

Query  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60
            MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ
Sbjct  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60

Query  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120
            FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG
Sbjct  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120

Query  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180
            TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP
Sbjct  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180

Query  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240
            QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN
Sbjct  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240

Query  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyqlp  300
            QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP
Sbjct  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP  300

Query  301  falailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360
            FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN
Sbjct  301  FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360

Query  361  NLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGAV  420
            NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV
Sbjct  361  NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV  420

Query  421  ELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQA  480
            ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA
Sbjct  421  ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA  480

Query  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540
            MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR
Sbjct  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540

Query  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600
            QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS
Sbjct  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600

Query  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660
            EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA
Sbjct  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660

Query  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720
            LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV
Sbjct  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720

Query  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780
            TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS
Sbjct  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780

Query  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVdlspqlsepqplldladsa  840
            PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA
Sbjct  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA  840

Query  841  lslKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900
            LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE
Sbjct  841  LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900

Query  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939
            TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK
Sbjct  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939

4) YPO0256 in NC_003143


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score = 1362 bits (5169),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 939/939 (100%), Positives = 939/939 (100%), Gaps = 0/939 (0%)

Query  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60
            MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ
Sbjct  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60

Query  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120
            FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG
Sbjct  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120

Query  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180
            TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP
Sbjct  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180

Query  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240
            QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN
Sbjct  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240

Query  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyqlp  300
            QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP
Sbjct  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP  300

Query  301  falailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360
            FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN
Sbjct  301  FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360

Query  361  NLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGAV  420
            NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV
Sbjct  361  NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV  420

Query  421  ELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQA  480
            ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA
Sbjct  421  ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA  480

Query  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540
            MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR
Sbjct  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540

Query  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600
            QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS
Sbjct  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600

Query  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660
            EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA
Sbjct  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660

Query  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720
            LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV
Sbjct  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720

Query  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780
            TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS
Sbjct  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780

Query  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVdlspqlsepqplldladsa  840
            PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA
Sbjct  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA  840

Query  841  lslKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900
            LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE
Sbjct  841  LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900

Query  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939
            TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK
Sbjct  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939

5) YPD4_0223 in NC_017154


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score = 1362 bits (5169),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 939/939 (100%), Positives = 939/939 (100%), Gaps = 0/939 (0%)

Query  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60
            MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ
Sbjct  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60

Query  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120
            FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG
Sbjct  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120

Query  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180
            TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP
Sbjct  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180

Query  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240
            QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN
Sbjct  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240

Query  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyqlp  300
            QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP
Sbjct  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP  300

Query  301  falailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360
            FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN
Sbjct  301  FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360

Query  361  NLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGAV  420
            NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV
Sbjct  361  NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV  420

Query  421  ELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQA  480
            ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA
Sbjct  421  ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA  480

Query  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540
            MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR
Sbjct  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540

Query  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600
            QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS
Sbjct  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600

Query  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660
            EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA
Sbjct  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660

Query  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720
            LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV
Sbjct  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720

Query  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780
            TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS
Sbjct  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780

Query  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVdlspqlsepqplldladsa  840
            PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA
Sbjct  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA  840

Query  841  lslKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900
            LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE
Sbjct  841  LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900

Query  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939
            TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK
Sbjct  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939

6) YPD8_0228 in NC_017160


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score = 1362 bits (5169),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 939/939 (100%), Positives = 939/939 (100%), Gaps = 0/939 (0%)

Query  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60
            MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ
Sbjct  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60

Query  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120
            FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG
Sbjct  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120

Query  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180
            TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP
Sbjct  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180

Query  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240
            QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN
Sbjct  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240

Query  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyqlp  300
            QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP
Sbjct  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP  300

Query  301  falailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360
            FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN
Sbjct  301  FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360

Query  361  NLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGAV  420
            NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV
Sbjct  361  NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV  420

Query  421  ELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQA  480
            ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA
Sbjct  421  ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA  480

Query  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540
            MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR
Sbjct  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540

Query  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600
            QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS
Sbjct  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600

Query  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660
            EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA
Sbjct  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660

Query  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720
            LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV
Sbjct  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720

Query  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780
            TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS
Sbjct  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780

Query  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVdlspqlsepqplldladsa  840
            PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA
Sbjct  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA  840

Query  841  lslKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900
            LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE
Sbjct  841  LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900

Query  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939
            TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK
Sbjct  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939

7) YPN_3413 in NC_008149


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score = 1362 bits (5169),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 939/939 (100%), Positives = 939/939 (100%), Gaps = 0/939 (0%)

Query  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60
            MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ
Sbjct  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60

Query  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120
            FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG
Sbjct  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120

Query  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180
            TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP
Sbjct  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180

Query  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240
            QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN
Sbjct  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240

Query  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyqlp  300
            QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP
Sbjct  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP  300

Query  301  falailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360
            FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN
Sbjct  301  FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360

Query  361  NLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGAV  420
            NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV
Sbjct  361  NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV  420

Query  421  ELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQA  480
            ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA
Sbjct  421  ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA  480

Query  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540
            MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR
Sbjct  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540

Query  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600
            QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS
Sbjct  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600

Query  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660
            EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA
Sbjct  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660

Query  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720
            LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV
Sbjct  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720

Query  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780
            TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS
Sbjct  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780

Query  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVdlspqlsepqplldladsa  840
            PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA
Sbjct  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA  840

Query  841  lslKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900
            LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE
Sbjct  841  LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900

Query  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939
            TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK
Sbjct  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939

8) YPDSF_3715 in NC_009381


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score = 1362 bits (5169),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 939/939 (100%), Positives = 939/939 (100%), Gaps = 0/939 (0%)

Query  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60
            MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ
Sbjct  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60

Query  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120
            FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG
Sbjct  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120

Query  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180
            TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP
Sbjct  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180

Query  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240
            QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN
Sbjct  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240

Query  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyqlp  300
            QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP
Sbjct  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP  300

Query  301  falailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360
            FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN
Sbjct  301  FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360

Query  361  NLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGAV  420
            NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV
Sbjct  361  NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV  420

Query  421  ELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQA  480
            ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA
Sbjct  421  ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA  480

Query  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540
            MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR
Sbjct  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540

Query  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600
            QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS
Sbjct  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600

Query  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660
            EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA
Sbjct  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660

Query  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720
            LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV
Sbjct  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720

Query  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780
            TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS
Sbjct  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780

Query  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVdlspqlsepqplldladsa  840
            PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA
Sbjct  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA  840

Query  841  lslKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900
            LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE
Sbjct  841  LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900

Query  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939
            TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK
Sbjct  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939

9) YPZ3_0221 in NC_014029


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score = 1362 bits (5169),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 939/939 (100%), Positives = 939/939 (100%), Gaps = 0/939 (0%)

Query  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60
            MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ
Sbjct  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60

Query  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120
            FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG
Sbjct  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120

Query  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180
            TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP
Sbjct  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180

Query  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240
            QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN
Sbjct  181  QGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSN  240

Query  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyqlp  300
            QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP
Sbjct  241  QLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLP  300

Query  301  falailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360
            FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN
Sbjct  301  FALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYN  360

Query  361  NLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGAV  420
            NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV
Sbjct  361  NLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAV  420

Query  421  ELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQA  480
            ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA
Sbjct  421  ELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA  480

Query  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540
            MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR
Sbjct  481  MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRR  540

Query  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600
            QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS
Sbjct  541  QNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFS  600

Query  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660
            EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA
Sbjct  601  EPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNA  660

Query  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720
            LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV
Sbjct  661  LCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQV  720

Query  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780
            TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS
Sbjct  721  TRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANAS  780

Query  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVdlspqlsepqplldladsa  840
            PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA
Sbjct  781  PDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSA  840

Query  841  lslKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900
            LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE
Sbjct  841  LSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHE  900

Query  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939
            TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK
Sbjct  901  TLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939

10) baeS1 in NC_005810


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score = 1345 bits (5105),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 928/929 (99%), Positives = 929/929 (100%), Gaps = 0/929 (0%)

Query  1    MTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAAS  60
            +TLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAAS
Sbjct  11   LTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAAS  70

Query  61   LISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDS  120
            LISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDS
Sbjct  71   LISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDS  130

Query  121  FIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAV  180
            FIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAV
Sbjct  131  FIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAV  190

Query  181  CDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLK  240
            CDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLK
Sbjct  191  CDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLK  250

Query  241  NSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyqlpfalaillllt  300
            NSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLT
Sbjct  251  NSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLT  310

Query  301  svlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQY  360
            SVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQY
Sbjct  311  SVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQY  370

Query  361  DTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGAVELLQNTPLDA  420
            DTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDA
Sbjct  371  DTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDA  430

Query  421  GQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALS  480
            GQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALS
Sbjct  431  GQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALS  490

Query  481  KSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVE  540
            KSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVE
Sbjct  491  KSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVE  550

Query  541  DTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSL  600
            DTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSL
Sbjct  551  DTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSL  610

Query  601  CLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYA  660
            CLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYA
Sbjct  611  CLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYA  670

Query  661  KLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTAL  720
            KLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTAL
Sbjct  671  KLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTAL  730

Query  721  AIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQA  780
            AIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQA
Sbjct  731  AIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQA  790

Query  781  GMNHYLSKPVTLGQLAEMLDLTAQFQLERGVdlspqlsepqplldladsalslKLYQSLQ  840
            GMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQ
Sbjct  791  GMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQ  850

Query  841  VLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQL  900
            VLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQL
Sbjct  851  VLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQL  910

Query  901  DEIIHVLLQPPTTCESTFIISQGQSLMVK  929
            DEIIHVLLQPPTTCESTFIISQGQSLMVK
Sbjct  911  DEIIHVLLQPPTTCESTFIISQGQSLMVK  939

11) y0513 in NC_004088


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score = 1345 bits (5105),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 928/929 (99%), Positives = 929/929 (100%), Gaps = 0/929 (0%)

Query  1    MTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAAS  60
            +TLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAAS
Sbjct  11   LTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAAS  70

Query  61   LISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDS  120
            LISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDS
Sbjct  71   LISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDS  130

Query  121  FIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAV  180
            FIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAV
Sbjct  131  FIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAV  190

Query  181  CDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLK  240
            CDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLK
Sbjct  191  CDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLK  250

Query  241  NSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyqlpfalaillllt  300
            NSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLT
Sbjct  251  NSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLT  310

Query  301  svlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQY  360
            SVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQY
Sbjct  311  SVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQY  370

Query  361  DTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGAVELLQNTPLDA  420
            DTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDA
Sbjct  371  DTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDA  430

Query  421  GQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALS  480
            GQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALS
Sbjct  431  GQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALS  490

Query  481  KSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVE  540
            KSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVE
Sbjct  491  KSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVE  550

Query  541  DTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSL  600
            DTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSL
Sbjct  551  DTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSL  610

Query  601  CLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYA  660
            CLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYA
Sbjct  611  CLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYA  670

Query  661  KLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTAL  720
            KLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTAL
Sbjct  671  KLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTAL  730

Query  721  AIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQA  780
            AIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQA
Sbjct  731  AIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQA  790

Query  781  GMNHYLSKPVTLGQLAEMLDLTAQFQLERGVdlspqlsepqplldladsalslKLYQSLQ  840
            GMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQ
Sbjct  791  GMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQ  850

Query  841  VLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQL  900
            VLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQL
Sbjct  851  VLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQL  910

Query  901  DEIIHVLLQPPTTCESTFIISQGQSLMVK  929
            DEIIHVLLQPPTTCESTFIISQGQSLMVK
Sbjct  911  DEIIHVLLQPPTTCESTFIISQGQSLMVK  939

12) YPTB0311 in NC_006155


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score = 1312 bits (4977),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 899/909 (99%), Positives = 903/909 (99%), Gaps = 0/909 (0%)

Query  31   AFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPEISIK  90
            AFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPEISIK
Sbjct  31   AFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPEISIK  90

Query  91   HYDSCYIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSD  150
            HYDS YIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSD
Sbjct  91   HYDSYYIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSD  150

Query  151  YLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAY  210
            YLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAY
Sbjct  151  YLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAY  210

Query  211  NHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQ  270
            NHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQ
Sbjct  211  NHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQ  270

Query  271  LKGPGWQQLVIYPRIGFAWEALKPALYQLPFalvilllltsvlslllryylaiplWNFIN  330
            LKGPGWQQLVIYPR+GFAWEALKPALYQLPFAL ILLLLTSVLSLLLRYYLAIPLWNFIN
Sbjct  271  LKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFIN  330

Query  331  IIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVkertlalakakra  390
            IIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLALA AKRA
Sbjct  331  IIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLALAEAKRA  390

Query  391  aeqanrrkSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCslsllaii  450
            AEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAII
Sbjct  391  AEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAII  450

Query  451  nnllDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISADIPLELELD  510
            NNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISA+IPLELELD
Sbjct  451  NNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIPLELELD  510

Query  511  TLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQ  570
            TLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQ
Sbjct  511  TLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQ  570

Query  571  TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHGELFAP  630
            TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHGELFAP
Sbjct  571  TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHGELFAP  630

Query  631  QRLHAQLSAWGMTCQPELANQPSRYFVDNALCYLPGRLYANLKQYLQGAETEVLKSLPLQ  690
            QRLHAQLSAWGMTCQPELANQPSR FVDNALCYLPGRLYA+LKQYLQGAETE LKSLPLQ
Sbjct  631  QRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEALKSLPLQ  690

Query  691  PWQMHILLVDDSETNRDITGMMLQQLGHQVTLADSGTTALAIGRQHRFDLVLMDIRMPVL  750
            PWQMHILLVDDSETNRDITGMMLQQLGHQVT ADSGTTALAIGRQHRFDLVLMDIRMPVL
Sbjct  691  PWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDIRMPVL  750

Query  751  DGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLD  810
            DGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLD
Sbjct  751  DGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLD  810

Query  811  LTAQFQLERGVdlspqlsepqplldladsalslKLYQSLQVLIQQAKDAIENLPVLSHTL  870
            LTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQVLIQQAKDAIENLPVLSHTL
Sbjct  811  LTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQVLIQQAKDAIENLPVLSHTL  870

Query  871  HTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQDIIQLDEIIHVLLQPPTTCESTFII  930
            HTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQ+IIQLDEIIHVLLQPPTTCESTFII
Sbjct  871  HTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQPPTTCESTFII  930

Query  931  SQGQSLMVK  939
            SQGQSLMVK
Sbjct  931  SQGQSLMVK  939

13) YPTS_0335 in NC_010634


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score = 1312 bits (4977),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 899/909 (99%), Positives = 903/909 (99%), Gaps = 0/909 (0%)

Query  31   AFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPEISIK  90
            AFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPEISIK
Sbjct  31   AFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPEISIK  90

Query  91   HYDSCYIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSD  150
            HYDS YIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSD
Sbjct  91   HYDSYYIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSD  150

Query  151  YLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAY  210
            YLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAY
Sbjct  151  YLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAY  210

Query  211  NHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQ  270
            NHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQ
Sbjct  211  NHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQ  270

Query  271  LKGPGWQQLVIYPRIGFAWEALKPALYQLPFalvilllltsvlslllryylaiplWNFIN  330
            LKGPGWQQLVIYPR+GFAWEALKPALYQLPFAL ILLLLTSVLSLLLRYYLAIPLWNFIN
Sbjct  271  LKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFIN  330

Query  331  IIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVkertlalakakra  390
            IIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLALA AKRA
Sbjct  331  IIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLALAEAKRA  390

Query  391  aeqanrrkSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCslsllaii  450
            AEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAII
Sbjct  391  AEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAII  450

Query  451  nnllDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISADIPLELELD  510
            NNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISA+IPLELELD
Sbjct  451  NNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIPLELELD  510

Query  511  TLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQ  570
            TLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQ
Sbjct  511  TLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQ  570

Query  571  TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHGELFAP  630
            TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHGELFAP
Sbjct  571  TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHGELFAP  630

Query  631  QRLHAQLSAWGMTCQPELANQPSRYFVDNALCYLPGRLYANLKQYLQGAETEVLKSLPLQ  690
            QRLHAQLSAWGMTCQPELANQPSR FVDNALCYLPGRLYA+LKQYLQGAETE LKSLPLQ
Sbjct  631  QRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEALKSLPLQ  690

Query  691  PWQMHILLVDDSETNRDITGMMLQQLGHQVTLADSGTTALAIGRQHRFDLVLMDIRMPVL  750
            PWQMHILLVDDSETNRDITGMMLQQLGHQVT ADSGTTALAIGRQHRFDLVLMDIRMPVL
Sbjct  691  PWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDIRMPVL  750

Query  751  DGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLD  810
            DGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLD
Sbjct  751  DGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLD  810

Query  811  LTAQFQLERGVdlspqlsepqplldladsalslKLYQSLQVLIQQAKDAIENLPVLSHTL  870
            LTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQVLIQQAKDAIENLPVLSHTL
Sbjct  811  LTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQVLIQQAKDAIENLPVLSHTL  870

Query  871  HTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQDIIQLDEIIHVLLQPPTTCESTFII  930
            HTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQ+IIQLDEIIHVLLQPPTTCESTFII
Sbjct  871  HTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQPPTTCESTFII  930

Query  931  SQGQSLMVK  939
            SQGQSLMVK
Sbjct  931  SQGQSLMVK  939

14) YPK_3918 in NC_010465


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score = 1311 bits (4974),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 898/909 (99%), Positives = 903/909 (99%), Gaps = 0/909 (0%)

Query  31   AFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRRESLQNTSPLPEISIK  90
            AFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRRESLQ+TSPLPEISIK
Sbjct  31   AFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPEISIK  90

Query  91   HYDSCYIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSD  150
            HYDS YIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSD
Sbjct  91   HYDSYYIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSD  150

Query  151  YLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAY  210
            YLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAY
Sbjct  151  YLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAY  210

Query  211  NHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQ  270
            NHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQ
Sbjct  211  NHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQ  270

Query  271  LKGPGWQQLVIYPRIGFAWEALKPALYQLPFalvilllltsvlslllryylaiplWNFIN  330
            LKGPGWQQLVIYPR+GFAWEALKPALYQLPFAL ILLLLTSVLSLLLRYYLAIPLWNFIN
Sbjct  271  LKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFIN  330

Query  331  IIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVkertlalakakra  390
            IIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLALA AKRA
Sbjct  331  IIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLALAEAKRA  390

Query  391  aeqanrrkSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCslsllaii  450
            AEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAII
Sbjct  391  AEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAII  450

Query  451  nnllDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISADIPLELELD  510
            NNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISA+IPLELELD
Sbjct  451  NNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIPLELELD  510

Query  511  TLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQ  570
            TLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQ
Sbjct  511  TLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQ  570

Query  571  TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHGELFAP  630
            TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHGELFAP
Sbjct  571  TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHGELFAP  630

Query  631  QRLHAQLSAWGMTCQPELANQPSRYFVDNALCYLPGRLYANLKQYLQGAETEVLKSLPLQ  690
            QRLHAQLSAWGMTCQPELANQPSR FVDNALCYLPGRLYA+LKQYLQGAETE LKSLPLQ
Sbjct  631  QRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEALKSLPLQ  690

Query  691  PWQMHILLVDDSETNRDITGMMLQQLGHQVTLADSGTTALAIGRQHRFDLVLMDIRMPVL  750
            PWQMHILLVDDSETNRDITGMMLQQLGHQVT ADSGTTALAIGRQHRFDLVLMDIRMPVL
Sbjct  691  PWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDIRMPVL  750

Query  751  DGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLD  810
            DGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLD
Sbjct  751  DGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLD  810

Query  811  LTAQFQLERGVdlspqlsepqplldladsalslKLYQSLQVLIQQAKDAIENLPVLSHTL  870
            LTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQVLIQQAKDAIENLPVLSHTL
Sbjct  811  LTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQVLIQQAKDAIENLPVLSHTL  870

Query  871  HTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQDIIQLDEIIHVLLQPPTTCESTFII  930
            HTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQ+IIQLDEIIHVLLQPPTTCESTFII
Sbjct  871  HTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQPPTTCESTFII  930

Query  931  SQGQSLMVK  939
            SQGQSLMVK
Sbjct  931  SQGQSLMVK  939

15) YpsIP31758_3832 in NC_009708


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score = 1293 bits (4904),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 896/909 (99%), Positives = 905/909 (99%), Gaps = 0/909 (0%)

Query  31   AFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPEISIK  90
            AFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPEISIK
Sbjct  31   AFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPEISIK  90

Query  91   HYDSCYIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSD  150
            HYDS YIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSD
Sbjct  91   HYDSYYIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSD  150

Query  151  YLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAY  210
            YLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAY
Sbjct  151  YLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAY  210

Query  211  NHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQ  270
            NHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQ
Sbjct  211  NHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQ  270

Query  271  LKGPGWQQLVIYPRIGFAWEALKPALYQLPFalvilllltsvlslllryylaiplWNFIN  330
            LKGPGWQQLVIYPR+GFAWEALKPALYQLPFAL ILLLLTSVLSLLLRYYLAIPLWNFIN
Sbjct  271  LKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFIN  330

Query  331  IIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVkertlalakakra  390
            IIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLALA AKRA
Sbjct  331  IIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLALAEAKRA  390

Query  391  aeqanrrkSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCslsllaii  450
            AEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAII
Sbjct  391  AEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAII  450

Query  451  nnllDFSRIESGQMtlslkktallpllDQAMLTIHSQALSKSLALSTFISADIPLELELD  510
            NNLLDFSRIESGQMTLSL KTALLPLLDQAMLTIHSQALSKSLALSTFISA+IPLELELD
Sbjct  451  NNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIPLELELD  510

Query  511  TLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQ  570
            TLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQ
Sbjct  511  TLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQ  570

Query  571  TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPIPFHGELFAP  630
            TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPP+PFHGELFAP
Sbjct  571  TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHGELFAP  630

Query  631  QRLHAQLSAWGMTCQPELTNQPSRHFVDNALCYLPGRLYTNLKQYLQGAETEALKSLPLQ  690
            QRLHAQLSAWGMTCQPEL+NQPSRHFVDNALCYLPGRLY++LKQYLQGAETEALKSLPLQ
Sbjct  631  QRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEALKSLPLQ  690

Query  691  PWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDIRMPVL  750
            PWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDIRMPVL
Sbjct  691  PWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDIRMPVL  750

Query  751  DGLATTARWRHDPANIDSHCMITALSANASPDEQIKTNQAGMNHYLSKPVTLGQLAEMLD  810
            DGLATTARWRHDPANIDSHCMITALSANASPDEQIKT+QAGMNHYLSKPVTLGQLAEMLD
Sbjct  751  DGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLD  810

Query  811  LTAQFQLERGVdlspqlsepqplldladsalslKLYQSLQVLIQQAKDAIENLPVLSHTL  870
            LTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQVLIQQAKDAIENLPVLSHTL
Sbjct  811  LTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQVLIQQAKDAIENLPVLSHTL  870

Query  871  HTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQDIIHLDEIIHVLLQPPTTCESTFII  930
            HTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQ+II+LDEIIHVLLQPPTTCESTFII
Sbjct  871  HTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQPPTTCESTFII  930

Query  931  SQGQSLMVK  939
            SQGQSLMVK
Sbjct  931  SQGQSLMVK  939

16) YpAngola_A3944 in NC_010159


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score = 1285 bits (4876),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 891/891 (100%), Positives = 891/891 (100%), Gaps = 0/891 (0%)

Query  1    MASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQ  60
            MASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQ
Sbjct  49   MASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQ  108

Query  61   HKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTH  120
            HKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTH
Sbjct  109  HKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTH  168

Query  121  NNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGE  180
            NNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGE
Sbjct  169  NNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGE  228

Query  181  LLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFA  240
            LLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFA
Sbjct  229  LLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFA  288

Query  241  WEALKPAlyqlpfalailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINR  300
            WEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINR
Sbjct  289  WEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINR  348

Query  301  IDELGHIARAYNNLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHE  360
            IDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHE
Sbjct  349  IDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHE  408

Query  361  IRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSL  420
            IRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSL
Sbjct  409  IRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSL  468

Query  421  EKTALLPLLDQAMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKF  480
            EKTALLPLLDQAMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKF
Sbjct  469  EKTALLPLLDQAMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKF  528

Query  481  TPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNL  540
            TPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNL
Sbjct  529  TPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNL  588

Query  541  AKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPEL  600
            AKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPEL
Sbjct  589  AKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPEL  648

Query  601  ANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDI  660
            ANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDI
Sbjct  649  ANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDI  708

Query  661  TGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDS  720
            TGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDS
Sbjct  709  TGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDS  768

Query  721  HCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVdlspqls  780
            HCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLS
Sbjct  769  HCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLS  828

Query  781  epqplldladsalslKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDA  840
            EPQPLLDLADSALSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDA
Sbjct  829  EPQPLLDLADSALSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDA  888

Query  841  VIQLEHALDTHETLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  891
            VIQLEHALDTHETLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK
Sbjct  889  VIQLEHALDTHETLTQQEIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK  939

17) YE105_C0310 in NC_015224


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  910 bits (3448),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 654/926 (71%), Positives = 787/926 (85%), Gaps = 12/926 (1%)

Query  1    MEKSSSlvtrltlllgmtltAIWLISIAMTAFFSYEDTRQRLVSELTHMASLRADLSNYQ  60
            M K+SSLVTRLTLL+G+TLT IWLI IA TAFFSYE+TRQ L++ELTHMAS+RADLSN Q
Sbjct  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60

Query  61   FEGAERDALSLINRQDHNQMSWGFP-IPIKNESVKNNTLINSITCSPTQSKHDLQIKQAY  119
            FEGAERDA SLI+R++  Q +  +P I+IK+        +N  +C+  Q K+DL I QAY
Sbjct  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYD-SYYIPFNLDSCNINQHKNDLWIIQAY  119

Query  120  GTSGQTYYLDSFAIKNNDGITIFKPQNVSSDYLKQRRKELLLLPIFPTHNNIFWGMPTYT  179
            GT+GQTYYLDSF IK+++GI +F PQ+ SSDYL+QRRK+LLLLP FPTHNNI+WG PTYT
Sbjct  120  GTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYT  179

Query  180  QQNGWHVSVAACDQMGSLAGFSLKLNELVTNNQSFDQRDINllldkegkllplSQQNIPS  239
             Q GWHVSVA CD++G+LAGF+LKLN+L++ N++ +QRDINLLLDK+G LLP+SQQ  +S
Sbjct  180  PQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSS  239

Query  240  NQLYEILRQLKNIHLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRIGFAWEAAKPAlhql  299
            NQL EIL QLKN  LHDGWQQTPDYLVLRTQLKGPGWQQLVIYPR+GFAWEA KPAL QL
Sbjct  240  NQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQL  299

Query  300  pfalailllltlalslllryylaiplWNFVNIIGSTGPQAMEPRLPVKRMDELGHIARAY  359
            PFALAILLLLT  LSLLLRYYLAIPLWNF+NIIG+TGPQAMEPRLP++R+DELGHIARAY
Sbjct  300  PFALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAY  359

Query  360  NGLLDNLNEQYDTLEMKVKERTLALAKSKLAAEQANHRKSIHLTTISHEIRTPLNGALGA  419
            N LLD LNEQYDTLEMKVKERTLALA +K AAEQAN+RKS HLTTISHEIRTPLNGALGA
Sbjct  360  NNLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGA  419

Query  420  VELLQNTPLAPEQYQLAETARQCSHSLLAIINNLLDFSRIESGQLTLSQEKTALLPLLDQ  479
            VELLQNTPL + Q +LAETA+QCS SLLAIINNLLDFSRIESGQ+TLS EKTALLPLLDQ
Sbjct  420  VELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQ  479

Query  480  AMLTIHSQVLNKPIALSTYVSSDVPLEIELDSQRIKQILVNLLGNAVKFTRQGHISLTVE  539
            AMLTIHSQ L+K++ALST++S+++PLE+ELD+ R++QILVNLLGNAVKFT QG+I L V 
Sbjct  480  AMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVR  539

Query  540  RKGQQLCFTVEDTGCGIDSQHQEKIFRPFIQTYDHRQGTGLGLTIADNLAKMMGGNITLY  599
            R+ Q LCFTVEDTGCGID QHQ+ IF+PF+QT DH QGTGLGL+IADNLAKMMGG++T++
Sbjct  540  RQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVF  599

Query  600  SKPNCGSHFSLTLPFRGTTPVMSFKNVCYaapsslqaqlsaWGITCQPMNHKSISLPLGL  659
            S P  GS FSL LPF + TP M+F    + AP  L+AQLSAWG+TCQP      + P   
Sbjct  600  SEPGQGSCFSLCLPFNAITPPMPFHGELF-APQRLHAQLSAWGMTCQP---ELANQPSRH  655

Query  660  FSDKELCYLPGRLYTKVKHYLDNKGCAppylqqiqhhlplqpwhMSILLVDDAETNRDIT  719
            F D+ LCYLPGRLY+K+K+YL+          +    LPLQPW+M ILLVDD+ETNRDIT
Sbjct  656  FVDNALCYLPGRLYAKLKQYLQGAE------TEALKSLPLQPWQMHILLVDDSETNRDIT  709

Query  720  GMMLRQLGHQVTLAESGEIALHIGQGQYFDLVLMDIRMPGMDGLTATQHWRNDTINLDNR  779
            GMML+QLGHQVT A+SG  AL IG+ + FDLVLMDIRMP +DGL++T +WR+D  N+D++
Sbjct  710  GMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSH  769

Query  780  CMITALSANTNPDEKIKAYQAGMNHYISKPVTFNQLAEVLDLTAQFQLERGINLTPQVTT  839
            CMITALSAN++PDE+IK+ QAGMNHY+SKPVT+ QLAE+LDLTAQFQLERG++L+PQ++ 
Sbjct  770  CMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSE  829

Query  840  AKPLLNladdslrlklskslqellqlaRDSLTHIPTLSDHLHTLKGCAGQAGLIELQEAV  899
            ++PLL+LAD +L LKL +SLQ L+Q A+D++ ++P LS+ LHT+KGCAGQAGLIELQ+AV
Sbjct  830  PQPLLDLADSALSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAV  889

Query  900  IQLEIAIEAKERITQRDITRLDEIIH  925
            IQLE A+++ E +TQ++I +LDEIIH
Sbjct  890  IQLEHALDTHETLTQQEIIQLDEIIH  915

18) Y11_35181 in NC_017564


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  910 bits (3447),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 654/926 (71%), Positives = 787/926 (85%), Gaps = 12/926 (1%)

Query  1    MEKSSSlvtrltlllgmtltAIWLISIAMTAFFSYEDTRQRLVSELTHMASLRADLSNYQ  60
            M K+SSLVTRLTLL+G+TLT IWLI IA TAFFSYE+TRQ L++ELTHMAS+RADLSN Q
Sbjct  1    MGKASSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQ  60

Query  61   FEGAERDALSLINRQDHNQMSWGFP-IPIKNESVKNNTLINSITCSPTQSKHDLQIKQAY  119
            FEGAERDA SLI+R++  Q +  +P I+IK+        +N  +C+  Q K+DL I QAY
Sbjct  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYD-SYYIPFNLDSCNINQHKNDLWIIQAY  119

Query  120  GTSGQTYYLDSFAIKNNDGITIFKPQNVSSDYLKQRRKELLLLPIFPTHNNIFWGMPTYT  179
            GT+GQTYYLDSF IK+++GI +F PQ+ SSDYL+QRRK+LLLLP FPTHNNI+WG PTYT
Sbjct  120  GTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYT  179

Query  180  QQNGWHVSVAACDQMGSLAGFSLKLNELVTNNQSFDQRDINllldkegkllplSQQNIPS  239
             Q GWHVSVA CD++G+LAGF+LKLN+L++ N++ +QRDINLLLDK+G LLP+SQQ  +S
Sbjct  180  PQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSS  239

Query  240  NQLYEILRQLKNIHLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRIGFAWEAAKPAlhql  299
            NQL EIL QLKN  LHDGWQQTPDYLVLRTQLKGPGWQQLVIYPR+GFAWEA KPAL QL
Sbjct  240  NQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQL  299

Query  300  pfalailllltlalslllryylaiplWNFVNIIGSTGPQAMEPRLPVKRMDELGHIARAY  359
            PFALAILLLLT  LSLLLRYYLAIPLWNF+NIIG+TGPQAMEPRLP++R+DELGHIARAY
Sbjct  300  PFALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAY  359

Query  360  NGLLDNLNEQYDTLEMKVKERTLALAKSKLAAEQANHRKSIHLTTISHEIRTPLNGALGA  419
            N LLD LNEQYDTLEMKVKERTLALA +K AAEQAN+RKS HLTTISHEIRTPLNGALGA
Sbjct  360  NNLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGA  419

Query  420  VELLQNTPLAPEQYQLAETARQCSHSLLAIINNLLDFSRIESGQLTLSQEKTALLPLLDQ  479
            VELLQNTPL + Q +LAETA+QCS SLLAIINNLLDFSRIESGQ+TLS EKTALLPLLDQ
Sbjct  420  VELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQ  479

Query  480  AMLTIHSQVLNKPIALSTYVSSDVPLEIELDSQRIKQILVNLLGNAVKFTRQGHISLTVE  539
            AMLTIHSQ L+K++ALST++S+++PLE+ELD+ R++QILVNLLGNAVKFT QG+I L V 
Sbjct  480  AMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVR  539

Query  540  RKGQQLCFTVEDTGCGIDSQHQEKIFRPFIQTYDHRQGTGLGLTIADNLAKMMGGNITLY  599
            R+ Q LCFTVEDTGCGID QHQ+ IF+PF+QT DH QGTGLGL+IADNLAKMMGG++T++
Sbjct  540  RQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVF  599

Query  600  SKPNCGSRFSLTLPFRGTTPVMSFKNVCYaapsslqaqlsaWGITCQPMNHKSISLPLGL  659
            S P  GS FSL LPF + TP M+F    + AP  L+AQLSAWG+TCQP      + P   
Sbjct  600  SEPGQGSCFSLCLPFNAITPPMPFHGELF-APQRLHAQLSAWGMTCQP---ELANQPSRH  655

Query  660  FSDKELCYLPGRLYTKVKHYLDNKGCAppylqqiqhhlplqpwhMSILLVDDAETNRDIT  719
            F D+ LCYLPGRLY+K+K+YL+          +    LPLQPW+M ILLVDD+ETNRDIT
Sbjct  656  FVDNALCYLPGRLYAKLKQYLQGAE------TEALKSLPLQPWQMHILLVDDSETNRDIT  709

Query  720  GMMLRQLGHQVTLAESGEIALHIGQGQYFDLVLMDIRMPGMDGLTATQHWRNDTINLDNR  779
            GMML+QLGHQVT A+SG  AL IG+ + FDLVLMDIRMP +DGL++T +WR+D  N+D++
Sbjct  710  GMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSH  769

Query  780  CMITALSANTNPDEKIKAYQAGMNHYISKPVTFNQLAEVLDLTAQFQLERGINLTPQVTT  839
            CMITALSAN++PDE+IK+ QAGMNHY+SKPVT+ QLAE+LDLTAQFQLERG++L+PQ++ 
Sbjct  770  CMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSE  829

Query  840  AKPLLNladdslrlklskslqellqlaRDSLTHIPTLSDHLHTLKGCAGQAGLIELQEAV  899
            ++PLL+LAD +L LKL +SLQ L+Q A+D++ ++P LS+ LHT+KGCAGQAGLIELQ+AV
Sbjct  830  PQPLLDLADSALSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAV  889

Query  900  IQLEIAIEAKERITQRDITRLDEIIH  925
            IQLE A+++ E +TQ++I +LDEIIH
Sbjct  890  IQLEHALDTHETLTQQEIIQLDEIIH  915

19) HDEF_0149 in NC_012751


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  688 bits (2600),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 450/905 (50%), Positives = 660/905 (73%), Gaps = 18/905 (1%)

Query  18   GINLTCIWFIATAMNVFFSFENTTTRLIKELENKADLQVGLINQLFQTAERDAL-LLTQI  76
            G+ LT IW+I  A   FFS+ENT   LI+EL + A ++ +L N+ F+ AERDA  L+++ 
Sbjct  16   GVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRR  75

Query  77   DEIAPHNA------KDFSGSFI--QNQNCNRLPLLSSAQNILQVSRMIDQKNYFFSFIIQ  128
            + + + ++      K++ + +I  + ++CN +    +   I+Q     +Q  Y+ SFII+
Sbjct  76   ESLQSTSPLPEISIKHYDSYYIPFNLDSCN-INQHKNDLWIIQAYGTAGQTYYLDSFIIK  134

Query  129  PEKGIALFTPKTLSHQELIKRQNELLDLLSGSPKDNIFWGKPVYVKNDGWHLSLALCNKH  188
               GI LF P+  S + L +R+++LL L   +  +NI+WG P Y  ++GWH+S+A+C+K 
Sbjct  135  QKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKV  194

Query  189  GGFSGIALNINRFFSHDPQKKNQDIHLLLDEAGDLLASSHPLSSKKTINHLLKELRTIKL  248
            G ++G+AL++N +++ +    ++DI+LLLD  G+LL+ S+  +S + ++++L++L+  KL
Sbjct  195  GTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKL  254

Query  249  HDGLQQTENFLVWRLRLPVQKLQQLIVYPRANFLKEAAQPALDQLPFAICIlvlltltvf  308
            HDG QQT ++LV R +L     QQL++YPR  F  EA +PAL QLPFA+ IL+LLT  + 
Sbjct  255  HDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLS  314

Query  309  fllRYYLAVPLWNFVKIMSTTGPESMEKRLPMNRHHELGRIAQSYNDLLDILNKQYDTLE  368
            +LLRYYLA+PLWNF++I+++TGP++ME RLP+NR +ELG+IA++YN+LLD LN QYDTLE
Sbjct  315  LLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLE  374

Query  369  TRVNERTLQLERAKQVAEQANRRKSLHLTTISHEIRTPLNGALGAIELLKHTSLSPSQLK  428
             +V+ERTL L  AK+ AEQANRRKS HLTTISHEIRTPLNGALGA+ELL++T+L ++Q++
Sbjct  375  MKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMR  434

Query  429  LLDTTQQCsasllsiinallDFSHIESGQMTLVLEQTELLPILDQAMLTIQSQAFKHSLN  488
            L +T++QCS SLL+IIN LLDFS+IESGQMTL LE+T LLP+LDQAMLTI+SQA+  SL 
Sbjct  435  LAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLA  494

Query  489  LYTFVSKEVPLVLKLDALRLRQILINLLGNAVKFTQKGSISLYVQHENHKLCFTVEDTGC  548
            L TF+S ++PL L LD+LRLRQIL+NLLGNAVKFT +G I L V+++N+ LCFTVEDTGC
Sbjct  495  LSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGC  554

Query  549  GID-EkfqkkifqpffqAGINKGTGLGLTIASNLASLMKGTLDLQSTLNLGTRVCFEIPV  607
            GID +  Q  +      ++ ++GTGLGL+IA NLA +M G L + S    G+  CF + +
Sbjct  555  GIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGS--CFSLCL  612

Query  608  N-EKYAPPTIFSGSLSAPSSLIPQLNAWGIACLSN--NEVNPKLLDKDLIYLPGRLYSNV  664
              +  +PP  F G L AP  L +QL+AWG++C ++  N+ +  ++D+ L YLPGRLY+++
Sbjct  613  PFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKL  672

Query  665  KKILFEQEHLPESKLPVQPWKMSVLLVDDSEINLKIIGMMLSELGHDVELAHSGDEALEL  724
            K+ L   E  +   LP+QPW+M +LLVDDSE N  I GMML +LGH+V  A+SG  AL +
Sbjct  673  KQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAI  732

Query  725  AHHQRFDLVLMDIRMPKLNGLQTTRLWRTDLKNRDRECMIVALTANASPSEKQRVCKAGM  784
            ++++RFDLVLMDIRMP L+GL TT  WR D  N D +CMI AL+ANASP E+ +  +AGM
Sbjct  733  GRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGM  792

Query  785  NDYLCKPVTIADLAGILDLTAQFQIKRDISLVAQVSTLKPVLDTKDKNLISKIYLSMSKL  844
            N+YL KPVT+++LA +LDLTAQFQ+ R++ L +Q+S  +P+LD  D  L  K+Y S+  L
Sbjct  793  NHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQVL  852

Query  845  AEEIAESIHNPDPVYLADHLHKLKGCAGQAGFIELQEKVVELEKSIHENNKITEKDIKEL  904
             ++  ++I+N  PV L++ LH +KGCAGQAG+IELQ+ V++LE +++ ++ +T+++I +L
Sbjct  853  IQQAKDAIENL-PV-LSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQL  910

Query  905  KNLNQ  909
             ++ +
Sbjct  911  DEIIH  915

20) PAU_03782 in NC_012962


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  665 bits (2514),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 447/894 (50%), Positives = 646/894 (73%), Gaps = 5/894 (0%)

Query  27   VIATAFFSFRHAHQHMMDELSHLATLRADLSNHRFEDAEKDAQELARRYDAYYEKYENDK  86
            + +TAFFS+ +++Q +++EL+H+A++RADLSNH+FE+AE+DA  L  R ++         
Sbjct  27   IATTAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPE  86

Query  87   NITSNTDSKYLPINGNICQPDHEISQDNWFIqaygaagqayyLDSFIFKRSQGISIYPPE  146
                + DS Y+P+N + C+ +++  +D W+IQAYG+AGQ+YYLDSFI+K+ +GI ++PP+
Sbjct  87   ISIKHYDSYYIPFNLDSCNINQH-KNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQ  145

Query  147  KISDDYFVKRCLELANFPMSPNHDNIYWGQPEHIPGSGWSISVAASDKMGRLTGYAIKFN  206
            K S DY+ +R  +L  +P  P H+NIYWG P   P +GW +SVA  DK+G L+G+A+K+N
Sbjct  146  KSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLN  205

Query  207  DLLSYGQAVTNYDIDLWLDSNQQLLPFFKGKLPQDQEQHILALLKKVKLHDGWQYIPGYQ  266
            DL++Y ++V + DI+L LD N +LLP+ +   + +Q ++IL  LK+ KLHDGWQ  P+Y 
Sbjct  206  DLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYL  265

Query  267  VLRIQLKGPGWQQLVLYPTRGLFEEIIDQAIIQLPFALVILFMITLTLFWMLHHYLAKPL  326
            VLR QLKGPGWQQLV+YP  G+  E +  A+ QLPFAL IL+++T  L  +L+ YLA PL
Sbjct  266  VLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPL  325

Query  327  WQFVDIIDKTGPSALDVRLPENRRDELGQIARAYNALLDTLNQQYSTLENKVAERTRALT  386
            W+F++II+ TGP A++ RLP NR DELG+IARAYN LLDTLN+QY TLE KV ERT AL+
Sbjct  326  WNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLALA  385

Query  387  EAKQQAELANKRKSRHLTTISHELRTPLSGTLGALELLKTSEMDNEQLQLAETAHQCTLS  446
            EAK+ AE AN+RKS HLTTISHE+RTPL+G+LGA+ELL+ + +D  Q++LAETAHQC+LS
Sbjct  386  EAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSLS  445

Query  447  LLFIINKLLDFSRIEAGQVELQYATCQLLPLLDQSMATIQGMAHNKRLTLETFVAADVPQ  506
            LL IIN+LLDFSRIE+GQ+ L      LLPLLDQ+M TI++ A +K L+L TF++A++P 
Sbjct  446  LLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIPL  505

Query  507  SLVLDAIRVKQILVNLLGNACKFTDDGGICLTVTRSDNMLIFDVTDSGCGVAPENISSVF  566
             L LD++R++QILVNLLGNA KFT +G I L V R ++ L F V D+GCG+  ++  ++F
Sbjct  506  ELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIF  565

Query  567  NPFYQVQEHaqgtglglaiaatlaKMMGGSLKFNSAFGLGTSVVFQLPLTDFIEPELLQG  626
            +PF Q  +H QGTGLGLAIA  LAKMMGG L   S  G G+   + LP+  +  P  ++G
Sbjct  566  QPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHG  625

Query  627  EVDAPLALHRQLMTWGLTC---LSKQHYGELSANDLRFLPGRLRDIVERQLSGAPSPVQD  683
            E+ AP  LH QL +WG+TC   L++Q   ++  N L +LPGRL   + + L GA +    
Sbjct  626  ELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEALK  685

Query  684  NVPLQPWRMRVLLVDDAETNRDIIGMMLTRLGQEVQYAKDGTEALLLGKRYRFDLVLMDI  743
            ++PLQPW+M++LLVDD+ETNRDI GMML +LG++V  A  GT AL +G++ RFDLVLMDI
Sbjct  686  SLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDI  745

Query  744  LMPGQCDGLETTRLWRIDSDNQDSECMIVALTANTVAEEKERAAQAGMNDYISKPVTINQ  803
             MP   DGL TT  WR D+ N DS+CMI AL+AN+ ++E+ +++QAGMN+Y+SKPVT+ Q
Sbjct  746  RMPVL-DGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  804  LAQILEMTAEYQLRRDIDLMVQQETDKPLLSMNLLRMQERVRRELLTLLNEVEQHVTQQE  863
            LA++L++TA++QL R++DL  Q    +PLL +    +  ++ + L  L+++  + + +  
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQVLIQQAKDAIENLP  864

Query  864  VLEKLLHSMKGVSGQAGLNSLLCIIVEMENQVHNGALPQENELMKLRKLINATL  917
            VL   LH++KG +GQAGL  L   ++++E+ ++      ++E+++L  +I+  L
Sbjct  865  VLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLL  918

21) SG1280 in NC_007712


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  661 bits (2499),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 435/903 (49%), Positives = 654/903 (73%), Gaps = 10/903 (1%)

Query  30   VVAATYVSLNLTRHRILENLAHFSSLRMELTNHRFVGAERDAQAL-AHRYKLYHATPLVM  88
            + ++++ S + TR+ ++++L+H +S+R +L+NH+F GAERDA +L ++R  L  ++PL  
Sbjct  27   IATTAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPE  86

Query  89   LPDEKSESRYFPFNQENCIPPGKRERDRTFIQVFGTAGQTYYLDSFILDRRYGVSLLPPR  148
            ++    +S Y+PFN ++C    ++  D  +IQ +GTAGQTYYLDSFI+ ++ G+ L+PP+
Sbjct  87   ISIKHYDSYYIPFNLDSC-NINQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQ  145

Query  149  DHTPDYFIRQQVELNAFPHQPAHDNLFWGKPEFLPGTGWSVAVAAAAPNEVLTGLTVKLN  208
              ++DY+ +++ +L  +P  P+H+N++WG P + P  GW V+VA       L+G+++KLN
Sbjct  146  KSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLN  205

Query  209  DLLSYGHPVLEADINLWLDSDNRILPFSRVSAQTADRLQPMLQQLK---LKEGWQKVPGY  265
            DL++Y HPV + DINL LD +  +LP+S+ ++ ++++L+ +L+QLK   L +GWQ+ P+Y
Sbjct  206  DLIAYNHPVEQRDINLLLDKNGELLPISQQAT-SSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  266  MLLRTQLKGPGWQQVILFPRNGGMKRTLDIIAAQLPFAvvtllvlvvtlfwllHRYLARP  325
            ++LRTQLKGPGWQQ++++PR G    +L     QLPFA+  LL+L   L  LL+ YLA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  326  LWDFVAIIGKTGPHSLSVRLPENRHDELGSIAHAYNLLLDTLRTQYDNLENVVAERTRAL  385
            LW+F+ IIG TGP+++  RLP NR DELG IA+AYN LLDTL  QYD LE  V ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  386  NEAKQQAERANKRKSSHLTTISHELRTPLSGSLGALELLQMTTLTDKQFQLADTARQCVF  445
             EAK+ AE+AN+RKS HLTTISHE+RTPL+G+LGA+ELLQ T L   Q +LA+TA+QC +
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  446  SLLSIINNLLDFSRIESGQLSLHIEETPLLPILDQAMHTIQGPGQSKGLTLRTFVGKQVP  505
            SLL+IINNLLDFSRIESGQ++L +E T+LLP+LDQAM TI++ + SK+L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  506  LYLDIDGMRLRQILVNLLGNALKFTQSGGIFLSVKRRDQQLIFAVNDSGQGIAPEDQEKV  565
            L L++D +RLRQILVNLLGNA+KFT  G I L V+R++Q L F+V+D+G GI  ++Q+ +
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  566  FAPFFQSEGTMQGTGLGLAIAANLAKLMGGSLTLSSTPGLGTCMSFIMPLNDHREphplg  625
            F PF Q+ +  QGTGLGLAIA NLAK+MGG LT+ S PG G+C S+ +P+N    P P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  626  gqlaaplalhRQLAAWGISCDPSLEECP---FSAAELRFLPGKLYDRVIRAFAGDLPETS  682
            G+L AP  LH QL+AWG++C+P L + P   F    L +LPG+LY ++ + + G   E+ 
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  683  CNIPVQPWRLRILLVDDAVINREIIGMMLHSLGQDVTLACDGARALALGRQQHFDLVLMD  742
             ++P+QPW+++ILLVDD+  NR+I GMML+ LG++VT A  G+ ALA+GRQ++FDLVLMD
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  743  VRMPDMDGTACARLWREDAENRDRDCMITALSANTAPEDIARCKEAGMRHYLTKPVTLAQ  802
            +RMP +DG A +  WR+D+ N D +CMITALSAN++P++  +  +AGM HYL+KPVTL+Q
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  803  LADGISLAAEYQLQRDIPLQEQDSRLTTSFLAAGSERLRQKVHELLHSLLNEIELYVNDA  862
            LA+ + L+A++QL+R++ L  Q S    ++L  +   L  K+ + L+ L+++    +++ 
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSE-PQPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  863  ERISTLLHTlkgglgqaglgellCDVVDMENLVKHGLPLSGEQIAELRHALDRYLSAENA  922
              +S  LHT+KG  GQAGL EL   V+++E+ +     L+ ++I +L + ++  L +  +
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQPPTT  923

Query  923  SAG  925
              +
Sbjct  924  CES  926

22) SBOV13911 in NC_022241


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  596 bits (2251),  Expect = 2e-171, Method: Compositional matrix adjust.
 Identities = 400/897 (45%), Positives = 615/897 (69%), Gaps = 25/897 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPEQRLDELDSIAGAFNQLLDTLQVQYDNLENKVADRTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV +RT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AEQAN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGIGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGAP---PHQQNALLNAELLYFPGKLYDLAQQLILRTPNMPV  679
            G L AP  LH QL+ WG+   P    +    +++  L Y+PG+LY   +Q  L+ ++   
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQ-YLQGAETEA  683

Query  680  INNL-LPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLI  738
            +++L L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+
Sbjct  684  LKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLM  743

Query  739  DIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVAAEDIHRCKKNGIHHYITKPVTLA  798
            DIRMP +DG+     W+++P N+D++CM+ ALSA+ ++++  +  + G++HY++KPVTL+
Sbjct  744  DIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLG  803

Query  799  TLARYISIAAEYQLLRNIELQEQDPSRCSALLATDDVVINSKIFQSLDLLLADIENAVSA  858
             LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+  
Sbjct  804  QLAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIEN  862

Query  859  GKKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIITLEELTDLRQKIRMIFK  915
               + + +HT+KGC GQ G  EL   VI++E+ +     +T +E+ +L + I+++++
Sbjct  863  LPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

23) CFSAN002050_13355 in NC_021818


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  596 bits (2250),  Expect = 3e-171, Method: Compositional matrix adjust.
 Identities = 397/896 (45%), Positives = 612/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQQFEEAERDAKNLMYQCSLASEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN+QFE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDEKSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKAATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  ++  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AEQAN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQTMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQ+M TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  QKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

24) SARI_01589 in NC_010067


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  595 bits (2246),  Expect = 6e-171, Method: Compositional matrix adjust.
 Identities = 398/897 (45%), Positives = 621/897 (70%), Gaps = 23/897 (2%)

Query  52   AAAYISMAQNRKHIMEDLSTISEMNIVLNNQRFEEAERDAQKLMYQCSFATVIRHNNTFP  111
            ++A++S  + R+ ++++L+ ++ M   L+N++FE AERDA  L+ +      ++  + +P
Sbjct  29   TTAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISR---RESLQSTSPLP  85

Query  112  GVS-RH-----LPVGPPNCTPTLNRDKPRIFPQPYDIDEENNHRDHFILNHKNEISLLPA  165
             +S +H     +P    +C    +++  +I+ Q+Y+   +    D FI+++K+ I L+P+
Sbjct  86   EISIKHYDSYYIPFNLDSCNINQHKNDLWII-QAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  166  -NAPSGYSTLQLMTLRRLPLYPNHAGFYWSKPEYINGKGWNVSVAVTDQHGVFFGVTVDL  224
             +++S+Y   +   L  LP +P H  +YW+ P Y    GW+VSVAV D+ G + G ++ L
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  225  HNLITNNHPQLDDSIHVWLDQNNHLLPFSYAS------QKIRTRLENVTLHDGWQQIPGF  278
            ++LI+ NHP  +  I++ LD+N +LLP+S  +      + I  +L N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  279  LILRTTLHGPGWSQVILYPYGNLSSRILKTIIQQIPFTLTALVLMTSTFCWLLHSLLAKP  338
            L+LRT L GPGW Q+++YP   ++   LK  + Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  339  LWHFVDAINKTATEPLSTRLPEERQDELGSIAYAFNQLLNTLQVQYDNLESKVAERTHAL  398
            LW+F++ I  T+ +++  RLP +R DELG IA A+N+LL+TL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  399  NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIKQQGLADTARYCtl  458
             EAK+ AEQAN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA+ C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  459  slltlinnllDFSRIESGHFTLHMEETALLPLLDQTMQTIQGPAQSKKLSLRTFVGQHVP  518
            SLL++INNLLDFSRIESG+ TL +E TALLPLLDQ+M TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  519  LYFHTDAIRLRQILVNLLGNAVKFTETGGIRLTVKRHAEQLIFLVSDSGKGIEIQQQPKI  578
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+ + L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  579  FTAFYQADTNSQGTGIGLTIASSLAKMMGGELKIDSIPGVGTCISLVLPLQEYQPPQPIN  638
            F +F Q+  + QGTG+GL+IA +LAKMMGG+L + S PG G+C+SL LP++   PP P++
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  639  GTLSAPICLHRQLACWGI--RGELSHQQNALFNAELL-YFPGKLYNLAQQLILCTPNTPD  695
            G L AP  LH QL+ WG+  + EL++Q +  F  + L Y+PG+LY   +Q  L  ++T  
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQ-YLQGAETEA  683

Query  696  INKL-VQPWQLQILLVDDADINRDIIGRMLVSLGQNVTIAASSNEALTLSQQQRFDLVLM  754
            ++ L +QPWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVLM
Sbjct  684  LKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLM  743

Query  755  DIRMPEIDGIECVQLWHDNPANLDPDCMIVALSASVASEDINRCKKHGIHHYITKPVTLA  814
            DIRMP +DG+     W+++PAN+D++CMI ALSA+ ++++  +  + G++HY++KPVTL+
Sbjct  744  DIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLG  803

Query  815  TLARYISIAAEYQLLRNIELQEQDPSRCSALLATDDIDINSKIFQSLDLLLSDIESAVST  874
             LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +   A+  
Sbjct  804  QLAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIEN  862

Query  875  GKKVDQLLHTLKGCLGQAGQTELACYVADIEYRVNMGKIITMEELTNLRQKVRIIFN  931
               + + LHT+KGC GQAG  EL   V ++E  ++    +T +E+ +L + ++++++
Sbjct  863  LPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

25) SPAB_01934 in NC_010102


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  594 bits (2244),  Expect = 8e-171, Method: Compositional matrix adjust.
 Identities = 398/896 (45%), Positives = 612/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPEQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AEQAN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGAP---PHQQNALLNAELLYFPGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+   P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVAAEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ ++++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDVVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  KKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

26) SeAg_B1779 in NC_011149


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  593 bits (2239),  Expect = 2e-170, Method: Compositional matrix adjust.
 Identities = 397/896 (45%), Positives = 611/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDEKSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSYLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +    +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AEQAN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  QKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

27) SSPA1359 in NC_011147


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  592 bits (2236),  Expect = 4e-170, Method: Compositional matrix adjust.
 Identities = 395/896 (45%), Positives = 611/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEETERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE +ERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDEKSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AEQAN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLRMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLALKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+L++ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSQGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML   G++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  QKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

28) ssrA in NC_006511


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  592 bits (2236),  Expect = 4e-170, Method: Compositional matrix adjust.
 Identities = 395/896 (45%), Positives = 611/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEETERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE +ERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDEKSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  NEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AEQAN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLRMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLALKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+L++ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSQGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML   G++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  QKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

29) CFSAN001992_04630 in NC_020307


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  590 bits (2229),  Expect = 1e-169, Method: Compositional matrix adjust.
 Identities = 396/895 (45%), Positives = 609/895 (69%), Gaps = 21/895 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRIFLQSSDIDEKSFRRDSFILNHKNEISLLSTD  150
            +S +H     ++    +C    + +  +I +Q+ +   +++  DSFI+++K+ I L++ +
Sbjct  87   ISIKHYDSYYIPFNLDSCNINQHKNDLWI-IQAYGTAGQTYYLDSFIIKQKEGIVLFPPQ  145

Query  151  NPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKLP  209
            ++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL 
Sbjct  146  KSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLN  205

Query  210  DLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGFL  263
            DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++L
Sbjct  206  DLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYL  265

Query  264  ILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKPL  323
            +LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA PL
Sbjct  266  VLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPL  325

Query  324  WRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQALN  383
            W F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL 
Sbjct  326  WNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLALA  385

Query  384  EAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTLS  443
            EAK+ AEQAN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+LS
Sbjct  386  EAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSLS  445

Query  444  LLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVPL  503
            LLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++PL
Sbjct  446  LLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIPL  505

Query  504  YFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQIF  563
             ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  IF
Sbjct  506  ELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIF  565

Query  564  TAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIKG  623
             +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ G
Sbjct  566  QPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHG  625

Query  624  TLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTpnipvi  680
             L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++ 
Sbjct  626  ELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEALK  685

Query  681  nnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLIDI  740
            +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+DI
Sbjct  686  SLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDI  745

Query  741  RMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLATL  800
            RMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ L
Sbjct  746  RMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQL  805

Query  801  ARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAGK  860
            A  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+    
Sbjct  806  AEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENLP  864

Query  861  KIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRIIFK  915
             + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  865  VLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

30) SeSA_A1490 in NC_011094


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  590 bits (2229),  Expect = 1e-169, Method: Compositional matrix adjust.
 Identities = 396/895 (45%), Positives = 609/895 (69%), Gaps = 21/895 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRIFLQSSDIDEKSFRRDSFILNHKNEISLLSTD  150
            +S +H     ++    +C    + +  +I +Q+ +   +++  DSFI+++K+ I L++ +
Sbjct  87   ISIKHYDSYYIPFNLDSCNINQHKNDLWI-IQAYGTAGQTYYLDSFIIKQKEGIVLFPPQ  145

Query  151  NPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKLP  209
            ++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL 
Sbjct  146  KSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLN  205

Query  210  DLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGFL  263
            DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++L
Sbjct  206  DLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYL  265

Query  264  ILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKPL  323
            +LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA PL
Sbjct  266  VLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPL  325

Query  324  WRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQALN  383
            W F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL 
Sbjct  326  WNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLALA  385

Query  384  EAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTLS  443
            EAK+ AEQAN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+LS
Sbjct  386  EAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSLS  445

Query  444  LLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVPL  503
            LLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++PL
Sbjct  446  LLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIPL  505

Query  504  YFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQIF  563
             ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  IF
Sbjct  506  ELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIF  565

Query  564  TAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIKG  623
             +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ G
Sbjct  566  QPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHG  625

Query  624  TLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTpnipvi  680
             L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++ 
Sbjct  626  ELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEALK  685

Query  681  nnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLIDI  740
            +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+DI
Sbjct  686  SLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDI  745

Query  741  RMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLATL  800
            RMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ L
Sbjct  746  RMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQL  805

Query  801  ARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAGK  860
            A  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+    
Sbjct  806  AEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENLP  864

Query  861  KIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRIIFK  915
             + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  865  VLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

31) STBHUCCB_13520 in NC_016832


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  587 bits (2217),  Expect = 1e-168, Method: Compositional matrix adjust.
 Identities = 400/900 (45%), Positives = 612/900 (68%), Gaps = 31/900 (3%)

Query  37   AAYISMVQKRQHIIEDLSALSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDEKSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQLLTRKS----FPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGV  204
            +++S DY    L  R+     +P +PTH  +YW+ P Y    GWH SVAV D+ G + G 
Sbjct  145  QKSSSDY----LNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGF  200

Query  205  MVKLPDLISKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQ  258
             +KL DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ
Sbjct  201  ALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQ  260

Query  259  IPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKTILQQIPFTLTALVLMTSAFCWLLHRS  318
             P++L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  
Sbjct  261  TPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYY  320

Query  319  LAKPLWRFVDIINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAER  378
            LA PLW F++II  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ER
Sbjct  321  LAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKER  380

Query  379  TQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTAR  438
            T AL EAK+ AEQAN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA+
Sbjct  381  TLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAH  440

Query  439  NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG  498
            +C+LSLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++
Sbjct  441  QCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFIS  500

Query  499  QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQ  558
             ++PL ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+
Sbjct  501  ANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQH  560

Query  559  QSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPP  618
            Q  IF +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP
Sbjct  561  QQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPP  620

Query  619  QQIKGTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQlilctp  675
              + G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  + 
Sbjct  621  MPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAE  680

Query  676  nipiinnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDL  735
              ++ +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDL
Sbjct  681  TEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDL  740

Query  736  VLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPV  795
            VL+DIRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPV
Sbjct  741  VLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPV  800

Query  796  TLATLARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENA  855
            TL+ LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A
Sbjct  801  TLGQLAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDA  859

Query  856  VSAGKKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
            +     + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  860  IENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

32) TY21A_06410 in NC_021176


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  587 bits (2217),  Expect = 1e-168, Method: Compositional matrix adjust.
 Identities = 400/900 (45%), Positives = 612/900 (68%), Gaps = 31/900 (3%)

Query  37   AAYISMVQKRQHIIEDLSALSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDEKSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQLLTRKS----FPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGV  204
            +++S DY    L  R+     +P +PTH  +YW+ P Y    GWH SVAV D+ G + G 
Sbjct  145  QKSSSDY----LNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGF  200

Query  205  MVKLPDLISKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQ  258
             +KL DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ
Sbjct  201  ALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQ  260

Query  259  IPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKTILQQIPFTLTALVLMTSAFCWLLHRS  318
             P++L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  
Sbjct  261  TPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYY  320

Query  319  LAKPLWRFVDIINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAER  378
            LA PLW F++II  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ER
Sbjct  321  LAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKER  380

Query  379  TQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTAR  438
            T AL EAK+ AEQAN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA+
Sbjct  381  TLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAH  440

Query  439  NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG  498
            +C+LSLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++
Sbjct  441  QCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFIS  500

Query  499  QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQ  558
             ++PL ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+
Sbjct  501  ANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQH  560

Query  559  QSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPP  618
            Q  IF +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP
Sbjct  561  QQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPP  620

Query  619  QQIKGTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQlilctp  675
              + G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  + 
Sbjct  621  MPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAE  680

Query  676  nipiinnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDL  735
              ++ +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDL
Sbjct  681  TEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDL  740

Query  736  VLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPV  795
            VL+DIRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPV
Sbjct  741  VLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPV  800

Query  796  TLATLARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENA  855
            TL+ LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A
Sbjct  801  TLGQLAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDA  859

Query  856  VSAGKKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
            +     + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  860  IENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

33) ssrA in NC_004631


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  587 bits (2217),  Expect = 1e-168, Method: Compositional matrix adjust.
 Identities = 400/900 (45%), Positives = 612/900 (68%), Gaps = 31/900 (3%)

Query  37   AAYISMVQKRQHIIEDLSALSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDEKSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQLLTRKS----FPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGV  204
            +++S DY    L  R+     +P +PTH  +YW+ P Y    GWH SVAV D+ G + G 
Sbjct  145  QKSSSDY----LNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGF  200

Query  205  MVKLPDLISKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQ  258
             +KL DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ
Sbjct  201  ALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQ  260

Query  259  IPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKTILQQIPFTLTALVLMTSAFCWLLHRS  318
             P++L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  
Sbjct  261  TPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYY  320

Query  319  LAKPLWRFVDIINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAER  378
            LA PLW F++II  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ER
Sbjct  321  LAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKER  380

Query  379  TQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTAR  438
            T AL EAK+ AEQAN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA+
Sbjct  381  TLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAH  440

Query  439  NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG  498
            +C+LSLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++
Sbjct  441  QCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFIS  500

Query  499  QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQ  558
             ++PL ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+
Sbjct  501  ANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQH  560

Query  559  QSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPP  618
            Q  IF +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP
Sbjct  561  QQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPP  620

Query  619  QQIKGTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQlilctp  675
              + G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  + 
Sbjct  621  MPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAE  680

Query  676  nipiinnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDL  735
              ++ +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDL
Sbjct  681  TEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDL  740

Query  736  VLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPV  795
            VL+DIRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPV
Sbjct  741  VLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPV  800

Query  796  TLATLARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENA  855
            TL+ LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A
Sbjct  801  TLGQLAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDA  859

Query  856  VSAGKKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
            +     + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  860  IENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

34) ssrA in NC_003198


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  586 bits (2212),  Expect = 3e-168, Method: Compositional matrix adjust.
 Identities = 399/899 (45%), Positives = 612/899 (69%), Gaps = 29/899 (3%)

Query  37   AAYISMVQKRQHIIEDLSALSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDEKSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQLLTRKSF---PLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVM  205
            +++S DY   +   RK +   P +PTH  +YW+ P Y    GWH SVAV D+ G + G  
Sbjct  145  QKSSSDYLNQR---RKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFA  201

Query  206  VKLPDLISKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQI  259
            +KL DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ 
Sbjct  202  LKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQT  261

Query  260  PGFLILRTTLHGPGWSLVTLYPYGNLHNRILKTILQQIPFTLTALVLMTSAFCWLLHRSL  319
            P++L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  L
Sbjct  262  PDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYL  321

Query  320  AKPLWRFVDIINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERT  379
            A PLW F++II  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT
Sbjct  322  AIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERT  381

Query  380  QALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARN  439
             AL EAK+ AEQAN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++
Sbjct  382  LALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQ  441

Query  440  CTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQ  499
            C+LSLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ 
Sbjct  442  CSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISA  501

Query  500  HVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQ  559
            ++PL ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q
Sbjct  502  NIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQ  561

Query  560  SQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQ  619
              IF +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP 
Sbjct  562  QTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPM  621

Query  620  QIKGTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAEFLYFPGKLYDLAQQlilctpn  676
             + G L AP  LH QL+ WG+  +P    +    +++  + Y+PG+LY   +Q +  +  
Sbjct  622  PFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAET  681

Query  677  ipiinnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLV  736
             ++ +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLV
Sbjct  682  EALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLV  741

Query  737  LIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVT  796
            L+DIRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVT
Sbjct  742  LMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVT  801

Query  797  LATLARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAV  856
            L+ LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+
Sbjct  802  LGQLAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAI  860

Query  857  SAGKKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
                 + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  861  ENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

35) SEEB0189_12575 in NC_021844


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  577 bits (2179),  Expect = 1e-165, Method: Compositional matrix adjust.
 Identities = 399/897 (45%), Positives = 615/897 (69%), Gaps = 25/897 (2%)

Query  37   AAYISMVQKRQHIIDDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDEKSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGAP---PHQQNALLNAELLYFPGKLYDLAQQLILRTPNMPV  679
            G L AP  LH QL+ WG+   P    +    +++  L Y+PG+LY   +Q  L+ ++   
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQ-YLQGAETEA  683

Query  680  INNL-LPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLI  738
            +++L L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+
Sbjct  684  LKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLM  743

Query  739  DIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVAAEDIHRCKKNGIHHYITKPVTLA  798
            DIRMP +DG+     W+++P N+D++CM+ ALSA+ ++++  +  + G++HY++KPVTL+
Sbjct  744  DIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLG  803

Query  799  TLARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSA  858
             LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+  
Sbjct  804  QLAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIEN  862

Query  859  GQKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
               + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  863  LPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

36) SNSL254_A1505 in NC_011080


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  576 bits (2174),  Expect = 3e-165, Method: Compositional matrix adjust.
 Identities = 397/896 (45%), Positives = 613/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDEKSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVAAEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ ++++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDVVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  KKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

37) SN31241_24640 in NC_021902


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  576 bits (2174),  Expect = 3e-165, Method: Compositional matrix adjust.
 Identities = 397/896 (45%), Positives = 613/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDEKSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVAAEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ ++++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDVVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  KKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

38) SEEH1578_16195 in NC_021810


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  575 bits (2172),  Expect = 4e-165, Method: Compositional matrix adjust.
 Identities = 397/896 (45%), Positives = 612/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  QKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

39) SU5_02009 in NC_017623


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  575 bits (2172),  Expect = 4e-165, Method: Compositional matrix adjust.
 Identities = 397/896 (45%), Positives = 612/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  QKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

40) CFSAN002069_02040 in NC_021812


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  575 bits (2172),  Expect = 4e-165, Method: Compositional matrix adjust.
 Identities = 397/896 (45%), Positives = 612/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  QKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

41) SeHA_C1527 in NC_011083


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  575 bits (2172),  Expect = 4e-165, Method: Compositional matrix adjust.
 Identities = 397/896 (45%), Positives = 612/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  QKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

42) SE451236_12825 in NC_021820


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  571 bits (2157),  Expect = 7e-164, Method: Compositional matrix adjust.
 Identities = 395/896 (45%), Positives = 611/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G +   ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y++G+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  EKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

43) ssrA in NC_016856


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  571 bits (2157),  Expect = 7e-164, Method: Compositional matrix adjust.
 Identities = 395/896 (45%), Positives = 611/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G +   ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y++G+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  EKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

44) spiR in NC_017046


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  571 bits (2157),  Expect = 7e-164, Method: Compositional matrix adjust.
 Identities = 395/896 (45%), Positives = 611/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G +   ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y++G+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  EKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

45) ssrA in NC_003197


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  571 bits (2157),  Expect = 7e-164, Method: Compositional matrix adjust.
 Identities = 395/896 (45%), Positives = 611/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G +   ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y++G+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  EKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

46) spiR in NC_016810


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  571 bits (2157),  Expect = 7e-164, Method: Compositional matrix adjust.
 Identities = 395/896 (45%), Positives = 611/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G +   ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y++G+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  EKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

47) STMDT12_C14080 in NC_016860


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  571 bits (2157),  Expect = 7e-164, Method: Compositional matrix adjust.
 Identities = 395/896 (45%), Positives = 611/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G +   ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y++G+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  EKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

48) STU288_03280 in NC_021151


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  571 bits (2157),  Expect = 7e-164, Method: Compositional matrix adjust.
 Identities = 395/896 (45%), Positives = 611/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G +   ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y++G+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  EKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

49) ssrA in NC_016863


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  571 bits (2157),  Expect = 7e-164, Method: Compositional matrix adjust.
 Identities = 395/896 (45%), Positives = 611/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G +   ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y++G+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  EKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

50) CFSAN001921_10185 in NC_021814


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  571 bits (2157),  Expect = 7e-164, Method: Compositional matrix adjust.
 Identities = 395/896 (45%), Positives = 611/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G +   ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y++G+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  EKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

51) SeD_A1949 in NC_011205


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  570 bits (2153),  Expect = 1e-163, Method: Compositional matrix adjust.
 Identities = 397/896 (45%), Positives = 612/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTpnipv  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  innllppWQLQILLVDDADINRDIIGKMLVSLGQHVTVAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  QKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

52) ssrA in NC_011294


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  570 bits (2153),  Expect = 1e-163, Method: Compositional matrix adjust.
 Identities = 397/896 (45%), Positives = 612/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTpnipv  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  innllppWQLQILLVDDADINRDIIGKMLVSLGQHVTVAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  QKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

53) STMMW_13971 in NC_016854


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  570 bits (2153),  Expect = 1e-163, Method: Compositional matrix adjust.
 Identities = 395/896 (45%), Positives = 610/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEGLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I+ L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G +   ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPV  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y++G+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  EKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

54) ssrA in NC_016857


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  570 bits (2154),  Expect = 1e-163, Method: Compositional matrix adjust.
 Identities = 395/896 (45%), Positives = 611/896 (69%), Gaps = 23/896 (2%)

Query  53   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  112
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  113  VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  165
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  166  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKL  224
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G +   ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  225  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  278
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  279  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  338
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  339  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  398
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  399  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  458
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  459  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  518
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  519  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  578
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  579  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  638
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  639  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPV  695
            G L AP  LH QL+ WG+  +P    +    +++  L Y++G+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  696  INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  755
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  756  IRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  815
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  816  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  875
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  876  EKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  931
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

55) ssrA in NC_006905


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  569 bits (2149),  Expect = 3e-163, Method: Compositional matrix adjust.
 Identities = 396/896 (45%), Positives = 612/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDEKSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTpnipv  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  innllppWQLQILLVDDADINRDIISKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI + ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  QKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

56) ssrA in NC_012125


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  569 bits (2148),  Expect = 4e-163, Method: Compositional matrix adjust.
 Identities = 397/896 (45%), Positives = 612/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDEKSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQEQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTpnipv  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  innllppWQLQILLVDDADINRDIISKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI + ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  QKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMLFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I++L++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

57) ssrA in NC_011274


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  567 bits (2142),  Expect = 1e-162, Method: Compositional matrix adjust.
 Identities = 396/896 (45%), Positives = 612/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWHFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW+F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSCIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFS IESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTpnipv  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  innllppWQLQILLVDDADINRDIIGKMLVSLGQHVTVAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  QKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

58) ssrA in NC_022221


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  567 bits (2139),  Expect = 2e-162, Method: Compositional matrix adjust.
 Identities = 396/896 (45%), Positives = 611/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSCIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFS IESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTpnipv  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  innllppWQLQILLVDDADINRDIIGKMLVSLGQHVTVAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  QKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

59) ssrA in NC_016831


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  567 bits (2139),  Expect = 2e-162, Method: Compositional matrix adjust.
 Identities = 396/896 (45%), Positives = 611/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSCIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFS IESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTpnipv  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  innllppWQLQILLVDDADINRDIIGKMLVSLGQHVTVAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  QKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

60) I137_05565 in NC_021984


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  566 bits (2138),  Expect = 2e-162, Method: Compositional matrix adjust.
 Identities = 396/896 (45%), Positives = 611/896 (69%), Gaps = 23/896 (2%)

Query  37   AAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPE  96
            +A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE
Sbjct  30   TAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPE  86

Query  97   VS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLST  149
            +S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ 
Sbjct  87   ISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPP  144

Query  150  DNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFGVTVKL  208
            +++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G + G ++KL
Sbjct  145  QKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKL  204

Query  209  PDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGF  262
             DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++
Sbjct  205  NDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDY  264

Query  263  LILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKP  322
            L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ L+L+TS +  LL+  LA P
Sbjct  265  LVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIP  324

Query  323  LWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQAL  382
            LW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL
Sbjct  325  LWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLAL  384

Query  383  neakkraerankrkSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTL  442
             EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+L
Sbjct  385  AEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSL  444

Query  443  SLLAIINNLLDFSCIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVP  502
            SLLAIINNLLDFS IESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++P
Sbjct  445  SLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIP  504

Query  503  LYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQI  562
            L ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  I
Sbjct  505  LELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTI  564

Query  563  FTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIK  622
            F +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ 
Sbjct  565  FQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFH  624

Query  623  GTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFPGKLYDLAQQLILCTpnipv  679
            G L AP  LH QL+ WG+  +P    +    +++  L Y+PG+LY   +Q +  +   ++
Sbjct  625  GELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEAL  684

Query  680  innllppWQLQILLVDDADINRDIIGKMLVSLGQHVTVAASSNEALTLSQQQRFDLVLID  739
             +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+D
Sbjct  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMD  744

Query  740  IRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804

Query  800  LARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAG  859
            LA  + ++A++QL R ++L  Q +    +LL   D  ++ K++QSL++L+ +  +A+   
Sbjct  805  LAEMLDLTAQFQLERGVDLSPQLSEP-QPLLDLADSALSLKLYQSLQVLIQQAKDAIENL  863

Query  860  QKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALKELTDLRQKIRMIFK  915
              + + +HT+KGC GQ G  EL   VI++E+ +     ++ +E+ +L + I+++++
Sbjct  864  PVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEIIHVLLQ  919

61) Sbal175_2422 in NC_017571


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  473 bits (1782),  Expect = 3e-134, Method: Compositional matrix adjust.
 Identities = 365/899 (41%), Positives = 592/899 (66%), Gaps = 33/899 (3%)

Query  8    SLVTKLTVSFMSVLVALWLMI----EYQSYNNTFKHTLERSLVAFSELSGLRAEVSNTLF  63
            SLVT+LT+     L  +WL++     + SY+NT ++ L   L   ++++++RA++SN  F
Sbjct  6    SLVTRLTLLMGVTLTVIWLILIATTAFFSYENT-RQILINEL---THMASMRADLSNHQF  61

Query  64   ADASYDARQL---NKQLKQFASMDKVNAQEIVSHYFPFQVKS---HDDTLAMWVAQTFGN  117
             +A  DA  L      L+  +++  ++ ++  S Y+PF++ S   +++   +W+ Q++G 
Sbjct  62   EGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYGT  121

Query  118  AGQHRYLDTFILKPNEGITIYAASDANDEYFKIRLREIKQLSVQTSTTGYRWGTPIKDTN  177
            AGQ  YLD+FI+K +EGI ++++  ++ +Y++ R +++  L+   +     WG+P    +
Sbjct  122  AGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQ  181

Query  178  SEDYHLSFSYSSDPQDPLSPQVGFSINLASAMSLNNALGPGDISFFMTPQGELFSKSTLT  237
            + + H+S +      D ++   GF+++L   ++ N+++   DI++++  +GEL++ S  +
Sbjct  182  G-GWHVSVAVC----DKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQA  236

Query  238  LTPSILVKLKDEFSRAEPNAKSTAHALGDYYVIKEHIQGPGWQQITLISGVYLKDMALMP  297
             +++ L  + +++  +  +     +   DY V++ +++GPGWQQ+ + + + +   AL P
Sbjct  237  TSSNQLHEILNQLKNSKLHDGW--QQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKP  294

Query  298  FFKELPWSLLSLVFMAIILLNVLRINLARPIGHFVNIINSASQPTFERRLPQNRNDELGQ  357
             + +LP +L  L++++ +L  +LR  LA P+ +F+NII +++  + E RLP NR DELG+
Sbjct  295  ALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGH  354

Query  358  IAKAYNHLLDTVKENYDELEQKVTLRTHelalakqeaekaneRKTEHLTNISHEIRTPLN  417
            IA+AYN+LLDT++E+YD LE KV  RT  LA AK+ AE+AN RK++HLT ISHEIRTPLN
Sbjct  355  IARAYNNLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLN  414

Query  418  GITGALELLRNTQLTPKQMDLRDTAYncansllaiinnllDFSRIEADQIELNLQSYPIL  477
            G  GA+ELL+NT L + QM L +TA +C+ SLLAIINNLLDFSRIE++Q+ L+L+  ++L
Sbjct  415  GALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALL  474

Query  478  KLADDAMITIQSRVVNKPITLKCLVNANVAEKALLDPLRVRQILVNLLGNSAKFTEAGQI  537
             L D+AM+TI+S+ ++K+++L  +++AN++    LD LR+RQILVNLLGN+ KFT  G+I
Sbjct  475  PLLDQAMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRI  534

Query  538  LLRIEVVKQHLYFSVEDTGVGVAIQDQQRIFEPFAQTCHHKSGTGLGLPISAKLASKMQG  597
             LR+   +Q L F+VEDTG G+ +Q+QQ IF+PF QT +H  GTGLGL+I+ +LA  M G
Sbjct  535  QLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGG  594

Query  598  QLTMFSTLGEGSTFILDLPLIDPTAPLCLPNTPIVAPLALHPQLTLWG--ALPIEGDNPD  655
            +LT+FS  G+GS F L LP+   T+P+ + +  + AP  LH+QL+ WG    P  +++P 
Sbjct  595  HLTVFSEPGQGSCFSLCLPFNAITPPMPF-HGELFAPQRLHAQLSAWGMTCQPELANQPS  653

Query  656  --LASPELAHLPARLWQRLFEIRHNLPHQQRQHIPT--LLPWQLKILLVDDVETNRDIIG  711
              +    L  LP+RL  +L   ++ L   + + + +  L PWQ+ ILLVDD ETNRDI G
Sbjct  654  RHFVDNALCYLPGRLYAKL---KQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITG  710

Query  712  KMLLELGQQVIAVNSGEAALEKGTRHIFDLVLMDIRMPGLDGYQTTQQWRHSEDILDGDC  771
             ML +LG+QV   +SG +AL  G +H FDLVLMDIRMP LDG  TT +WRH    +D++C
Sbjct  711  MMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHC  770

Query  772  PIFALTANANPKEHDTIEAAGMNSYITKPVSLKQLNHALEAAADMQLDRDMPLVINNEID  831
             I AL+ANA+P E+     AGMN Y++KPV+L QL + L+ +A+ QL+R++ L  +    
Sbjct  771  MITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEP  830

Query  832  APMIDFSQTDLNHRLSVHLADMAHQAKLHIGKQAWKALSDVLHTIKGSAGLAGKKDIAN  890
             P++D++++ L+ +L   L  + +QAK  I + +   LS+ LHTIKG AG AG  ++ +
Sbjct  831  QPLLDLADSALSLKLYQSLQVLIQQAKDAIENLP--VLSHTLHTIKGCAGQAGLIELQD  887

62) Sbal117_2059 in NC_017579


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  471 bits (1776),  Expect = 8e-134, Method: Compositional matrix adjust.
 Identities = 364/893 (41%), Positives = 588/893 (66%), Gaps = 33/893 (3%)

Query  8    SLVTKLTVSFMSVLVALWLMI----EYQSYNNTFKHTLERSLVAFSELSGLRAEVSNTLF  63
            SLVT+LT+     L  +WL++     + SY+NT ++ L   L   ++++++RA++SN  F
Sbjct  6    SLVTRLTLLMGVTLTVIWLILIATTAFFSYENT-RQILINEL---THMASMRADLSNHQF  61

Query  64   ADASYDARQL---NKQLKQFASMDKVNAQEIVSHYFPFQ---AKSHDDTLAMWVAQTFGN  117
             +A  DA  L      L+  +++  ++ ++  S Y+PF+    + +++   +W+ Q++G 
Sbjct  62   EGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYGT  121

Query  118  AGQHRYLDTFILKPNEGITIYAASDANDEYFKIRLREIKQLSVQTSTTGYRWGTPIKDTN  177
            AGQ  YLD+FI+K +EGI ++++  ++ +Y++ R +++  L+   +     WG+P    +
Sbjct  122  AGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQ  181

Query  178  SEDYHLSFSYSSDPQDPLSPQVGFSINLASAMSLNNALGPGDISFFMSPQGELFSKSTLT  237
            + + H+S +      D ++   GF+++L   ++ N+++   DI++++  +GEL++ S  +
Sbjct  182  G-GWHVSVAVC----DKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQA  236

Query  238  LTPSILVKLKDEFSRAEPNAKSTAHALGDYYVIKEHIQGPGWQQITLISGVYLKDMALMP  297
             +++ L  + +++  +  +     +   DY V++ +++GPGWQQ+ + + + +   AL P
Sbjct  237  TSSNQLHEILNQLKNSKLHDGW--QQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKP  294

Query  298  FFKELPWSLLSLVFMAIILLNVLRINLARPIGHFVNIINSASQPTFERRLPQNRNDELGQ  357
             + +LP +L  L++++ +L  +LR  LA P+ +F+NII +++  + E RLP NR DELG+
Sbjct  295  ALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGH  354

Query  358  IAKAYNHLLDTVKENYDELEQKVTLRTHelalakqeaekaneRKTEHLTNISHEIRTPLN  417
            IA+AYN+LLDT++E+YD LE KV  RT  LA AK+ AE+AN RK++HLT ISHEIRTPLN
Sbjct  355  IARAYNNLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLN  414

Query  418  GITGALELLRNTQLTPKQMDLRDTAYncansllaiinnllDFSRIEADQIELNLQSYPIL  477
            G  GA+ELL+NT L + QM L +TA +C+ SLLAIINNLLDFSRIE++Q+ L+L+  ++L
Sbjct  415  GALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALL  474

Query  478  KLADDAMITIQSRVVNKPITLKCLVNANVAEKALLDPLRVRQILVNLLGNSAKFTEAGQI  537
             L D+AM+TI+S+ ++K+++L  +++AN++    LD LR+RQILVNLLGN+ KFT  G+I
Sbjct  475  PLLDQAMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRI  534

Query  538  LLRIEVVKQHLYFSVEDTGVGVAIQDQQRIFEPFAQTCHHKSGTGLGLPISAKLASKMQG  597
             LR+   +Q L F+VEDTG G+ +Q+QQ IF+PF QT +H  GTGLGL+I+ +LA  M G
Sbjct  535  QLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGG  594

Query  598  QLTMFSTLGEGSTFILDLPLIDPTAPLCLPNTPIVAPLALHPQLTLWG--ALPIEGDNPD  655
            +LT+FS  G+GS F L LP+   T+P+ + +  + AP  LH+QL+ WG    P  +++P 
Sbjct  595  HLTVFSEPGQGSCFSLCLPFNAITPPMPF-HGELFAPQRLHAQLSAWGMTCQPELANQPS  653

Query  656  --LASPELAHLPARLWQRLFEIRHNLPHQQRQHIPT--LLPWQLKILLVDDVETNRDIIG  711
              +    L  LP+RL  +L   ++ L   + + + +  L PWQ+ ILLVDD ETNRDI G
Sbjct  654  RHFVDNALCYLPGRLYAKL---KQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITG  710

Query  712  KMLLELGQQVIAVNSGEAALEKGTRHIFDLVLMDIRMPGLDGYQTTQQWRHSEDILDGDC  771
             ML +LG+QV   +SG +AL  G +H FDLVLMDIRMP LDG  TT +WRH    +D++C
Sbjct  711  MMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHC  770

Query  772  PIFALTANANPKEHDTIEAAGMNSYITKPVSLKQLNHALEAAADMQLDRDMPLVINNEID  831
             I AL+ANA+P E+     AGMN Y++KPV+L QL + L+ +A+ QL+R++ L  +    
Sbjct  771  MITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEP  830

Query  832  APMIDFSQTDLNHRLSVHLADMAHQAKLHIGKQAWKALSDVLHTIKGSAGLAG  884
             P++D++++ L+ +L   L  + +QAK  I + +   LS+ LHTIKG AG AG
Sbjct  831  QPLLDLADSALSLKLYQSLQVLIQQAKDAIENLP--VLSHTLHTIKGCAGQAG  881

63) Sbal_1944 in NC_009052


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  471 bits (1776),  Expect = 8e-134, Method: Compositional matrix adjust.
 Identities = 364/893 (41%), Positives = 588/893 (66%), Gaps = 33/893 (3%)

Query  8    SLVTKLTVSFMSVLVALWLMI----EYQSYNNTFKHTLERSLVAFSELSGLRAEVSNTLF  63
            SLVT+LT+     L  +WL++     + SY+NT ++ L   L   ++++++RA++SN  F
Sbjct  6    SLVTRLTLLMGVTLTVIWLILIATTAFFSYENT-RQILINEL---THMASMRADLSNHQF  61

Query  64   ADASYDARQL---NKQLKQFASMDKVNAQEIVSHYFPFQ---AKSHDDTLAMWVAQTFGN  117
             +A  DA  L      L+  +++  ++ ++  S Y+PF+    + +++   +W+ Q++G 
Sbjct  62   EGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYGT  121

Query  118  AGQHRYLDTFILKPNEGITIYAASDANDEYFKIRLREIKQLSVQTSTTGYRWGTPIKDTN  177
            AGQ  YLD+FI+K +EGI ++++  ++ +Y++ R +++  L+   +     WG+P    +
Sbjct  122  AGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQ  181

Query  178  SEDYHLSFSYSSDPQDPLSPQVGFSINLASAMSLNNALGPGDISFFMSPQGELFSKSTLT  237
            + + H+S +      D ++   GF+++L   ++ N+++   DI++++  +GEL++ S  +
Sbjct  182  G-GWHVSVAVC----DKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQA  236

Query  238  LTPSILVKLKDEFSRAEPNAKSTAHALGDYYVIKEHIQGPGWQQITLISGVYLKDMALMP  297
             +++ L  + +++  +  +     +   DY V++ +++GPGWQQ+ + + + +   AL P
Sbjct  237  TSSNQLHEILNQLKNSKLHDGW--QQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKP  294

Query  298  FFKELPWSLLSLVFMAIILLNVLRINLARPIGHFVNIINSASQPTFERRLPQNRNDELGQ  357
             + +LP +L  L++++ +L  +LR  LA P+ +F+NII +++  + E RLP NR DELG+
Sbjct  295  ALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGH  354

Query  358  IAKAYNHLLDTVKENYDELEQKVTLRTHelalakqeaekaneRKTEHLTNISHEIRTPLN  417
            IA+AYN+LLDT++E+YD LE KV  RT  LA AK+ AE+AN RK++HLT ISHEIRTPLN
Sbjct  355  IARAYNNLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLN  414

Query  418  GITGALELLRNTQLTPKQMDLRDTAYncansllaiinnllDFSRIEADQIELNLQSYPIL  477
            G  GA+ELL+NT L + QM L +TA +C+ SLLAIINNLLDFSRIE++Q+ L+L+  ++L
Sbjct  415  GALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALL  474

Query  478  KLADDAMITIQSRVVNKPITLKCLVNANVAEKALLDPLRVRQILVNLLGNSAKFTEAGQI  537
             L D+AM+TI+S+ ++K+++L  +++AN++    LD LR+RQILVNLLGN+ KFT  G+I
Sbjct  475  PLLDQAMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRI  534

Query  538  LLRIEVVKQHLYFSVEDTGVGVAIQDQQRIFEPFAQTCHHKSGTGLGLPISAKLASKMQG  597
             LR+   +Q L F+VEDTG G+ +Q+QQ IF+PF QT +H  GTGLGL+I+ +LA  M G
Sbjct  535  QLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGG  594

Query  598  QLTMFSTLGEGSTFILDLPLIDPTAPLCLPNTPIVAPLALHPQLTLWG--ALPIEGDNPD  655
            +LT+FS  G+GS F L LP+   T+P+ + +  + AP  LH+QL+ WG    P  +++P 
Sbjct  595  HLTVFSEPGQGSCFSLCLPFNAITPPMPF-HGELFAPQRLHAQLSAWGMTCQPELANQPS  653

Query  656  --LASPELAHLPARLWQRLFEIRHNLPHQQRQHIPT--LLPWQLKILLVDDVETNRDIIG  711
              +    L  LP+RL  +L   ++ L   + + + +  L PWQ+ ILLVDD ETNRDI G
Sbjct  654  RHFVDNALCYLPGRLYAKL---KQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITG  710

Query  712  KMLLELGQQVIAVNSGEAALEKGTRHIFDLVLMDIRMPGLDGYQTTQQWRHSEDILDGDC  771
             ML +LG+QV   +SG +AL  G +H FDLVLMDIRMP LDG  TT +WRH    +D++C
Sbjct  711  MMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHC  770

Query  772  PIFALTANANPKEHDTIEAAGMNSYITKPVSLKQLNHALEAAADMQLDRDMPLVINNEID  831
             I AL+ANA+P E+     AGMN Y++KPV+L QL + L+ +A+ QL+R++ L  +    
Sbjct  771  MITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEP  830

Query  832  APMIDFSQTDLNHRLSVHLADMAHQAKLHIGKQAWKALSDVLHTIKGSAGLAG  884
             P++D++++ L+ +L   L  + +QAK  I + +   LS+ LHTIKG AG AG
Sbjct  831  QPLLDLADSALSLKLYQSLQVLIQQAKDAIENLP--VLSHTLHTIKGCAGQAG  881

64) Sbal195_2247 in NC_009997


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  464 bits (1748),  Expect = 1e-131, Method: Compositional matrix adjust.
 Identities = 362/899 (41%), Positives = 586/899 (66%), Gaps = 33/899 (3%)

Query  8    SLVTKLTVSFMSVLVALWLMI----EYQSYNNTFKHTLERSLVAFSELSGLRAEVSNALF  63
            SLVT+LT+     L  +WL++     + SY+NT ++ L   L   ++++++RA++SN  F
Sbjct  6    SLVTRLTLLMGVTLTVIWLILIATTAFFSYENT-RQILINEL---THMASMRADLSNHQF  61

Query  64   ADASYDARQL---NKQLKQFASMDKVNAQEIVSHYFPFQ---AKSHDDTLAMWVAQTFGN  117
             +A  DA  L      L+  +++  ++ ++  S Y+PF+    + +++   +W+ Q++G 
Sbjct  62   EGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYGT  121

Query  118  AGQHRYLDTFILKPNEGITIYAASDANDEYFKIRLREIKQLSVQTSTTGYRWGTPIKDTN  177
            AGQ  YLD+FI+K +EGI ++++  ++ +Y++ R +++  L+   +     WG+P    +
Sbjct  122  AGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQ  181

Query  178  SENYHLSFSYSSDPQDPLSPQVGFSINLASAMSLNNALGPGDISFFMTPQGELFSKSTLT  237
            +   H+S +      D ++   GF+++L   ++ N+++   DI++++  +GEL++ S  +
Sbjct  182  G-GWHVSVAVC----DKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQA  236

Query  238  LTPSILVKLKDEFSRAEPNAKSTAHALGDYYVIKEHIQGPGWQQITLISGVYLKDMALMP  297
             +++ L  + +++  +  +     +   DY V++ +++GPGWQQ+ + + + +   AL P
Sbjct  237  TSSNQLHEILNQLKNSKLHDGW--QQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKP  294

Query  298  FFKELSWSLLSLVFMAIILLNVLRINLARPIGHFVNIINSASQPTFERRLPQNRNDELGQ  357
             + +L+ +L  L++++ +L  +LR  LA P+ +F+NII +++  + E RLP NR DELG+
Sbjct  295  ALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGH  354

Query  358  IAKAYNHLLDTAKENYDELEQKVTLRTHelalakqeaekaneRKTEHLTNISHEIRTPLN  417
            IA+AYN+LLDT +E+YD LE KV  RT  LA AK+ AE+AN RK++HLT ISHEIRTPLN
Sbjct  355  IARAYNNLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLN  414

Query  418  GITGALELLRNTQLTPKQMDLRDTAYncansllaiinnllDFSRIEADQIELNLQSYPIL  477
            G  GA+ELL+NT L + QM L +TA +C+ SLLAIINNLLDFSRIE++Q+ L+L+  ++L
Sbjct  415  GALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALL  474

Query  478  KLADDAMITIQSRVVNKPITLKCLVNANVAEKALLDPLRVRQILVNLLGNSAKFTEAGQI  537
             L D+AM+TI+S+ ++K+++L  +++AN++    LD LR+RQILVNLLGN+ KFT  G+I
Sbjct  475  PLLDQAMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRI  534

Query  538  LLRIEVVKQHLYFSVEDTGVGVAIQDQQRIFEPFAQTCHHKSGTGLGLPISAKLASKMKG  597
             LR+   +Q L F+VEDTG G+ +Q+QQ IF+PF QT +H  GTGLGL+I+ +LA  M G
Sbjct  535  QLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGG  594

Query  598  KLTMFSTLGEGSTFILDLPLIDPTAPLCLPNTPIVAPLALHPQLTLWG--ALPIEGENPD  655
             LT+FS  G+GS F L LP+   T+P+ + +  + AP  LH+QL+ WG    P  +++P 
Sbjct  595  HLTVFSEPGQGSCFSLCLPFNAITPPMPF-HGELFAPQRLHAQLSAWGMTCQPELANQPS  653

Query  656  --LASPELAHLPARLWQRLFEIRHNLPHQQRQ--HTPTLLPWQLKILLVDDVETNRDIIS  711
              +    L  LP+RL  +L   ++ L   + +   +  L PWQ+ ILLVDD ETNRDI +
Sbjct  654  RHFVDNALCYLPGRLYAKL---KQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITG  710

Query  712  KMLLELGQQVIAVSSGEAALEKGTRHIFDLVLMDIRMPGLDGYQTTQQWRHSENILDGDC  771
             ML +LG+QV    SG +AL  G +H FDLVLMDIRMP LDG  TT +WRH    +D++C
Sbjct  711  MMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHC  770

Query  772  PIFALTANANPKEHDTIEAAGMNSYITKPVSLKQLNHALEAAADMQLDRDMPLVINNEID  831
             I AL+ANA+P E+     AGMN Y++KPV+L QL + L+ +A+ QL+R++ L  +    
Sbjct  771  MITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEP  830

Query  832  APMIDFSQTDLNHRLSVHLADMAHQAKLHIGKQAWKALSDVLHTIKGSAGLAGKKDIAN  890
             P++D++++ L+ +L   L  + +QAK  I + +   LS+ LHTIKG AG AG  ++ +
Sbjct  831  QPLLDLADSALSLKLYQSLQVLIQQAKDAIENLP--VLSHTLHTIKGCAGQAGLIELQD  887

65) Sbal678_2256 in NC_016901


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  464 bits (1748),  Expect = 1e-131, Method: Compositional matrix adjust.
 Identities = 362/899 (41%), Positives = 586/899 (66%), Gaps = 33/899 (3%)

Query  8    SLVTKLTVSFMSVLVALWLMI----EYQSYNNTFKHTLERSLVAFSELSGLRAEVSNALF  63
            SLVT+LT+     L  +WL++     + SY+NT ++ L   L   ++++++RA++SN  F
Sbjct  6    SLVTRLTLLMGVTLTVIWLILIATTAFFSYENT-RQILINEL---THMASMRADLSNHQF  61

Query  64   ADASYDARQL---NKQLKQFASMDKVNAQEIVSHYFPFQ---AKSHDDTLAMWVAQTFGN  117
             +A  DA  L      L+  +++  ++ ++  S Y+PF+    + +++   +W+ Q++G 
Sbjct  62   EGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYGT  121

Query  118  AGQHRYLDTFILKPNEGITIYAASDANDEYFKIRLREIKQLSVQTSTTGYRWGTPIKDTN  177
            AGQ  YLD+FI+K +EGI ++++  ++ +Y++ R +++  L+   +     WG+P    +
Sbjct  122  AGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQ  181

Query  178  SENYHLSFSYSSDPQDPLSPQVGFSINLASAMSLNNALGPGDISFFMTPQGELFSKSTLT  237
            +   H+S +      D ++   GF+++L   ++ N+++   DI++++  +GEL++ S  +
Sbjct  182  G-GWHVSVAVC----DKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQA  236

Query  238  LTPSILVKLKDEFSRAEPNAKSTAHALGDYYVIKEHIQGPGWQQITLISGVYLKDMALMP  297
             +++ L  + +++  +  +     +   DY V++ +++GPGWQQ+ + + + +   AL P
Sbjct  237  TSSNQLHEILNQLKNSKLHDGW--QQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKP  294

Query  298  FFKELSWSLLSLVFMAIILLNVLRINLARPIGHFVNIINSASQPTFERRLPQNRNDELGQ  357
             + +L+ +L  L++++ +L  +LR  LA P+ +F+NII +++  + E RLP NR DELG+
Sbjct  295  ALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGH  354

Query  358  IAKAYNHLLDTAKENYDELEQKVTLRTHelalakqeaekaneRKTEHLTNISHEIRTPLN  417
            IA+AYN+LLDT +E+YD LE KV  RT  LA AK+ AE+AN RK++HLT ISHEIRTPLN
Sbjct  355  IARAYNNLLDTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLN  414

Query  418  GITGALELLRNTQLTPKQMDLRDTAYncansllaiinnllDFSRIEADQIELNLQSYPIL  477
            G  GA+ELL+NT L + QM L +TA +C+ SLLAIINNLLDFSRIE++Q+ L+L+  ++L
Sbjct  415  GALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALL  474

Query  478  KLADDAMITIQSRVVNKPITLKCLVNANVAEKALLDPLRVRQILVNLLGNSAKFTEAGQI  537
             L D+AM+TI+S+ ++K+++L  +++AN++    LD LR+RQILVNLLGN+ KFT  G+I
Sbjct  475  PLLDQAMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRI  534

Query  538  LLRIEVVKQHLYFSVEDTGVGVAIQDQQRIFEPFAQTCHHKSGTGLGLPISAKLASKMKG  597
             LR+   +Q L F+VEDTG G+ +Q+QQ IF+PF QT +H  GTGLGL+I+ +LA  M G
Sbjct  535  QLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGG  594

Query  598  KLTMFSTLGEGSTFILDLPLIDPTAPLCLPNTPIVAPLALHPQLTLWG--ALPIEGENPD  655
             LT+FS  G+GS F L LP+   T+P+ + +  + AP  LH+QL+ WG    P  +++P 
Sbjct  595  HLTVFSEPGQGSCFSLCLPFNAITPPMPF-HGELFAPQRLHAQLSAWGMTCQPELANQPS  653

Query  656  --LASPELAHLPARLWQRLFEIRHNLPHQQRQ--HTPTLLPWQLKILLVDDVETNRDIIS  711
              +    L  LP+RL  +L   ++ L   + +   +  L PWQ+ ILLVDD ETNRDI +
Sbjct  654  RHFVDNALCYLPGRLYAKL---KQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITG  710

Query  712  KMLLELGQQVIAVSSGEAALEKGTRHIFDLVLMDIRMPGLDGYQTTQQWRHSENILDGDC  771
             ML +LG+QV    SG +AL  G +H FDLVLMDIRMP LDG  TT +WRH    +D++C
Sbjct  711  MMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHC  770

Query  772  PIFALTANANPKEHDTIEAAGMNSYITKPVSLKQLNHALEAAADMQLDRDMPLVINNEID  831
             I AL+ANA+P E+     AGMN Y++KPV+L QL + L+ +A+ QL+R++ L  +    
Sbjct  771  MITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEP  830

Query  832  APMIDFSQTDLNHRLSVHLADMAHQAKLHIGKQAWKALSDVLHTIKGSAGLAGKKDIAN  890
             P++D++++ L+ +L   L  + +QAK  I + +   LS+ LHTIKG AG AG  ++ +
Sbjct  831  QPLLDLADSALSLKLYQSLQVLIQQAKDAIENLP--VLSHTLHTIKGCAGQAGLIELQD  887

66) SVI_2262 in NC_014012


> NC_003143_P1|2|G2|218927461|YP_002345336.1|Yersinia_pestis_CO92|-|646..3465|-|YPO0256|two-component 
sensor/regulator
Length=939

 Score =  421 bits (1585),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 302/673 (45%), Positives = 468/673 (70%), Gaps = 10/673 (1%)

Query  266  HPIEQYYIIKEHIKGPGWLQVTLVSKTFLQNLALTPFFSELPWSllalalmafvllhvlR  325
            +   +Y +++ ++KGPGW Q+ + ++  +   AL P + +LP +L  L L++ VL  +LR
Sbjct  259  QQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLR  318

Query  326  INLTKPIGHFVSIINGDAQPTFERRLPETRQDELGQIAKAYNHLLDTVKESHDVLEKKVA  385
              L+ P+ +F++II + +  + E RLP  R DELG+IA+AYN+LLDT++E  D LE KV 
Sbjct  319  YYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVK  378

Query  386  QRTHELAITTQEAEKANMRKSEHLTDISHEIRTPLNGILGSLELLRNTQLDAKQADLGDT  445
            +RT  LA + + AE+AN RKS+HLT ISHEIRTPLNG LG++ELL+NT LDA Q  L++T
Sbjct  379  ERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAET  438

Query  446  AFHCASSLLAIINNLLDFSRIEADQIELNYQLCSIFQLADNAMLTIQNRVINRPISLECI  505
            A +C+ SLLAIINNLLDFSRIE++Q+ L+ +  +++ L D+AMLTI+++ ++++++L  +
Sbjct  439  AHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTF  498

Query  506  VNADVPEKALLDPLRVRQILVNLLGNSAKFTEDGYILLRIEVVENHLYFSVEDTGDGIAI  565
            ++A++P    LD LR+RQILVNLLGN+ KFT +G I LR+   ++ L F+VEDTG GI +
Sbjct  499  ISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDV  558

Query  566  QDQQRIFEPFAQSCHHKAGSGLGLPISAKLALKMQGQLTMCSTLGYGSTFILDLPLTEAN  625
            Q+QQ IF+PF Q+ +H  G+GLGL+I+ +LA  M G+LT+ S  G GS F L LP+    
Sbjct  559  QHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAIT  618

Query  626  APLTLPPESIIAPLALHRQLSLWGAVP----IEGDNEELCHKELAHLPARLWQRLHEIRY  681
            +P+ +  E ++AP  LH QLS WG        +  + ++ ++ L  LP+RL  +L +  Y
Sbjct  619  PPMPFHGE-LFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLPGRLYAKLKQ--Y  675

Query  682  -NLPQEQTNNTlnllpwklkillVDDVETNRNIIGIMLAELGQQVFTASSGKAALQKGQR  740
             + ++ ++ ++L L PW++ ILLVDD ETNR+I G+ML +LG+QV  A SG +AL  G++
Sbjct  676  LQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQ  735

Query  741  HIFDLVLMDIRMPGLDGYQTTQMWRNSEDILDTECPIFALTANANPMDRDTIEAIGINSY  800
            H FDLVLMDIRMP LDG  TT  WR+    +D++C I AL+ANA+P ++      G+N Y
Sbjct  736  HRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHY  795

Query  801  LTKPVSLAQLNSALETAADLQLDRDMPLVINTDIDDPMIDFSQTDLNYRLAVHLTDIVEQ  860
            L+KPV+L+QL   L+ +A++QL+R++ L  +    +P++D++++ L+ +L   L  +++Q
Sbjct  796  LSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQVLIQQ  855

Query  861  AKQFIANEEWKLLSDVLHTIKGSAGLAGLKHIFDTAVDLEVILETEECLSLDVFSPLEGL  920
            AK+ I  E+  +LS+ LHTIKG AG AGL ++ D+ ++LE  L+T+E L+ + +  L+ +
Sbjct  856  AKDAI--ENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQEIIQLDEI  913

Query  921  IQALASAPTTCTA  933
            I+ L  +PTTC +
Sbjct  914  IHVLLQPPTTCES  926


 Score = 71.0 bits (250),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 52/183 (29%), Positives = 105/183 (58%), Gaps = 12/183 (6%)

Query  8    ASLVTKLTVSFTAVLICLWIMI----EFLSYSNTFNRILDRNLIAYGELSDLKSEVSNSL  63
            +SLVT+LT+     L  +W+++     F+SY NT  +IL  +L    +++ +++++SN  
Sbjct  5    SSLVTRLTLLMGVTLTVIWLILIATTAFFSYENT-RQILINEL---THMASMRADLSNHQ  60

Query  64   FSGAKYDAIQFDQR---LHQFSSIDKINAYEIVARYFPLS-DKKNTQNDTLSMWITQTFG  119
            F GA  DA  +  R   L+  S++  I+  +  + Y+P++ D  N +++   +WI Q++G
Sbjct  61   FEGAERDAASLISRRESLQSTSPLPEISIKHYDSYYIPFNLDSCNINQHKNDLWIIQAYG  120

Query  120  NAGQHRYIDSFIFQPHKGVSIYASTYADKAYFQKRFNEIKQLTSQQTVDGYRWGQPIFDK  179
             AGQ  Y+DSFI++   G+ ++++  +   Y+++R +++  L    T +   WG P +  
Sbjct  121  TAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTP  180

Query  180  KSG  182
            ++G
Sbjct  181  QGG  183