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Homologs of orf7 gene of NC_000921_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) orf7
( NP_223188.1 )

cag island protein

NC_000921
(Helicobacter pylori J99)

9e-79

100

2) HPGAM_02660
( YP_005780255.1 )

cag island protein

NC_017371
(Helicobacter pylori Gambia94/24)

5e-77

3) cag2
( YP_005783490.1 )

cag island protein

NC_017374
(Helicobacter pylori 2017)

3e-76

4) cag2
( YP_005791332.1 )

cag pathogenicity island protein

NC_017381
(Helicobacter pylori 2018)

3e-76

5) hp908_0520
( YP_005765023.1 )

cag island protein

NC_017357
(Helicobacter pylori 908)

3e-76

6) HPPC18_02490
( YP_006228764.1 )

cag island protein

NC_017742
(Helicobacter pylori PeCan18)

1e-71

• Sequence Alignments

1) orf7 in NC_000921


> NC_000921_P1|2|G2|15611537|NP_223188.1|Helicobacter_pylori_J99|+|491..1150|orf7|jhp0470|cag 
island protein
Length=219

 Score =  286 bits (1070),  Expect = 9e-79, Method: Compositional matrix adjust.
 Identities = 219/219 (100%), Positives = 219/219 (100%), Gaps = 0/219 (0%)

Query  1    MSLATSYNVSNNFSKFNIKRVRGYLICLVCNTPKMIQRGLNGVSFYGCSDYVNKGDCKGV  60
            MSLATSYNVSNNFSKFNIKRVRGYLICLVCNTPKMIQRGLNGVSFYGCSDYVNKGDCKGV
Sbjct  1    MSLATSYNVSNNFSKFNIKRVRGYLICLVCNTPKMIQRGLNGVSFYGCSDYVNKGDCKGV  60

Query  61   LREINGSMKMVCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNerkkdlekek  120
            LREINGSMKMVCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNERKKDLEKEK
Sbjct  61   LREINGSMKMVCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNERKKDLEKEK  120

Query  121  kellnkiekqkikHLERFILAGVKANIKENSFFLGCKNYPKCEWTASMDSQDLKCPKCNR  180
            KELLNKIEKQKIKHLERFILAGVKANIKENSFFLGCKNYPKCEWTASMDSQDLKCPKCNR
Sbjct  121  KELLNKIEKQKIKHLERFILAGVKANIKENSFFLGCKNYPKCEWTASMDSQDLKCPKCNR  180

Query  181  LMKRkknfknneffTATSLTLNAIEFCLYINLKKKETNV  219
            LMKRKKNFKNNEFFTATSLTLNAIEFCLYINLKKKETNV
Sbjct  181  LMKRKKNFKNNEFFTATSLTLNAIEFCLYINLKKKETNV  219

2) HPGAM_02660 in NC_017371


> NC_000921_P1|2|G2|15611537|NP_223188.1|Helicobacter_pylori_J99|+|491..1150|orf7|jhp0470|cag 
island protein
Length=219

 Score =  280 bits (1048),  Expect = 5e-77, Method: Compositional matrix adjust.
 Identities = 212/219 (97%), Positives = 216/219 (99%), Gaps = 0/219 (0%)

Query  1    MSLATSYNVSNNFSKFNIKRVRGYLICLVCNTPKMIQRELNGISFYGCSDYVNKGDCKGV  60
            MSLATSYNVSNNFSKFNIKRVRGYLICLVCNTPKMIQR LNG+SFYGCSDYVNKGDCKGV
Sbjct  1    MSLATSYNVSNNFSKFNIKRVRGYLICLVCNTPKMIQRGLNGVSFYGCSDYVNKGDCKGV  60

Query  61   LREINGSMKVVCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNerkkdlekek  120
            LREINGSMK+VCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNERKKDLEKEK
Sbjct  61   LREINGSMKMVCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNERKKDLEKEK  120

Query  121  kellnktekqkIKRLERFILAGVKANIKENSFFLGCKNYPKCEWTASMDSQDLKCLKCNR  180
            KELLNK EKQKIK+LERFILAGVKANIKENSFFLGCKNYPKCEWTASMDSQDLKC KCNR
Sbjct  121  KELLNKIEKQKIKHLERFILAGVKANIKENSFFLGCKNYPKCEWTASMDSQDLKCPKCNR  180

Query  181  LMKRkknfknneffTATSLTLNAMEFCLYINLKKKETNV  219
            LMKRKKNFKNNEFFTATSLTLNA+EFCLYINLKKKETNV
Sbjct  181  LMKRKKNFKNNEFFTATSLTLNAIEFCLYINLKKKETNV  219

3) cag2 in NC_017374


> NC_000921_P1|2|G2|15611537|NP_223188.1|Helicobacter_pylori_J99|+|491..1150|orf7|jhp0470|cag 
island protein
Length=219

 Score =  277 bits (1037),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 212/219 (97%), Positives = 217/219 (99%), Gaps = 0/219 (0%)

Query  1    MSLVTSYSVSNNFSKFNIKRVRGYLICFVCNTPKMIQRGLNGISFYGCSDYVNKGDCKGV  60
            MSL TSY+VSNNFSKFNIKRVRGYLIC+VCNTPKMIQRGLNG+SFYGCSDYVNKGDCKGV
Sbjct  1    MSLATSYNVSNNFSKFNIKRVRGYLICLVCNTPKMIQRGLNGVSFYGCSDYVNKGDCKGV  60

Query  61   LREINGSMKMVCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNerkkdlekek  120
            LREINGSMKMVCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNERKKDLEKEK
Sbjct  61   LREINGSMKMVCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNERKKDLEKEK  120

Query  121  kellnkiekqkikRLERFILAGVKANIKENSFFLGCKNYPKCEWTASMDSQDLKCPKCNR  180
            KELLNKIEKQKIK+LERFILAGVKANIKENSFFLGCKNYPKCEWTASMDSQDLKCPKCNR
Sbjct  121  KELLNKIEKQKIKHLERFILAGVKANIKENSFFLGCKNYPKCEWTASMDSQDLKCPKCNR  180

Query  181  LMKRkknfknneffTATSLTLNAMEFCLHINLKKKETNV  219
            LMKRKKNFKNNEFFTATSLTLNA+EFCL INLKKKETNV
Sbjct  181  LMKRKKNFKNNEFFTATSLTLNAIEFCLYINLKKKETNV  219

4) cag2 in NC_017381


> NC_000921_P1|2|G2|15611537|NP_223188.1|Helicobacter_pylori_J99|+|491..1150|orf7|jhp0470|cag 
island protein
Length=219

 Score =  277 bits (1037),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 212/219 (97%), Positives = 217/219 (99%), Gaps = 0/219 (0%)

Query  1    MSLVTSYSVSNNFSKFNIKRVRGYLICFVCNTPKMIQRGLNGISFYGCSDYVNKGDCKGV  60
            MSL TSY+VSNNFSKFNIKRVRGYLIC+VCNTPKMIQRGLNG+SFYGCSDYVNKGDCKGV
Sbjct  1    MSLATSYNVSNNFSKFNIKRVRGYLICLVCNTPKMIQRGLNGVSFYGCSDYVNKGDCKGV  60

Query  61   LREINGSMKMVCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNerkkdlekek  120
            LREINGSMKMVCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNERKKDLEKEK
Sbjct  61   LREINGSMKMVCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNERKKDLEKEK  120

Query  121  kellnkiekqkikRLERFILAGVKANIKENSFFLGCKNYPKCEWTASMDSQDLKCPKCNR  180
            KELLNKIEKQKIK+LERFILAGVKANIKENSFFLGCKNYPKCEWTASMDSQDLKCPKCNR
Sbjct  121  KELLNKIEKQKIKHLERFILAGVKANIKENSFFLGCKNYPKCEWTASMDSQDLKCPKCNR  180

Query  181  LMKRkknfknneffTATSLTLNAMEFCLHINLKKKETNV  219
            LMKRKKNFKNNEFFTATSLTLNA+EFCL INLKKKETNV
Sbjct  181  LMKRKKNFKNNEFFTATSLTLNAIEFCLYINLKKKETNV  219

5) hp908_0520 in NC_017357


> NC_000921_P1|2|G2|15611537|NP_223188.1|Helicobacter_pylori_J99|+|491..1150|orf7|jhp0470|cag 
island protein
Length=219

 Score =  277 bits (1037),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 212/219 (97%), Positives = 217/219 (99%), Gaps = 0/219 (0%)

Query  1    MSLVTSYSVSNNFSKFNIKRVRGYLICFVCNTPKMIQRGLNGISFYGCSDYVNKGDCKGV  60
            MSL TSY+VSNNFSKFNIKRVRGYLIC+VCNTPKMIQRGLNG+SFYGCSDYVNKGDCKGV
Sbjct  1    MSLATSYNVSNNFSKFNIKRVRGYLICLVCNTPKMIQRGLNGVSFYGCSDYVNKGDCKGV  60

Query  61   LREINGSMKMVCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNerkkdlekek  120
            LREINGSMKMVCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNERKKDLEKEK
Sbjct  61   LREINGSMKMVCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNERKKDLEKEK  120

Query  121  kellnkiekqkikRLERFILAGVKANIKENSFFLGCKNYPKCEWTASMDSQDLKCPKCNR  180
            KELLNKIEKQKIK+LERFILAGVKANIKENSFFLGCKNYPKCEWTASMDSQDLKCPKCNR
Sbjct  121  KELLNKIEKQKIKHLERFILAGVKANIKENSFFLGCKNYPKCEWTASMDSQDLKCPKCNR  180

Query  181  LMKRkknfknneffTATSLTLNAMEFCLHINLKKKETNV  219
            LMKRKKNFKNNEFFTATSLTLNA+EFCL INLKKKETNV
Sbjct  181  LMKRKKNFKNNEFFTATSLTLNAIEFCLYINLKKKETNV  219

6) HPPC18_02490 in NC_017742


> NC_000921_P1|2|G2|15611537|NP_223188.1|Helicobacter_pylori_J99|+|491..1150|orf7|jhp0470|cag 
island protein
Length=219

 Score =  262 bits (980),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 202/211 (96%), Positives = 207/211 (99%), Gaps = 0/211 (0%)

Query  1    MSNNFSKFNIKRVRGYLICLVCNTPKMIQRGLNGISFYGCSDYVDKGDCKGVLREINGSM  60
            +SNNFSKFNIKRVRGYLICLVCNTPKMIQRGLNG+SFYGCSDYV+KGDCKGVLREINGSM
Sbjct  9    VSNNFSKFNIKRVRGYLICLVCNTPKMIQRGLNGVSFYGCSDYVNKGDCKGVLREINGSM  68

Query  61   KMVCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNerkkdlekekkellnkie  120
            KMVCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNERKKDLEKEKKELLNKIE
Sbjct  69   KMVCLHCENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNERKKDLEKEKKELLNKIE  128

Query  121  kqkikRLERFILAGVKANIKENSFFLGCENYPKCEWTASMDSQDLKCLKCNRLMKRkknf  180
            KQKIK+LERFILAGVKANIKENSFFLGC NYPKCEWTASMDSQDLKC KCNRLMKRKKNF
Sbjct  129  KQKIKHLERFILAGVKANIKENSFFLGCKNYPKCEWTASMDSQDLKCPKCNRLMKRKKNF  188

Query  181  knneffTATSLILNAMEFCLHINLKKKETNV  211
            KNNEFFTATSL LNA+EFCL INLKKKETNV
Sbjct  189  KNNEFFTATSLTLNAIEFCLYINLKKKETNV  219