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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrpZ gene of L41862

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpZ1
( YP_273532.1 )

type III restriction system endonuclease

NC_005773
(Pseudomonas syringae 1448A)

7e-113

2) Psyr_1193
( YP_234285.1 )

type III restriction system endonuclease

NC_007005
(Pseudomonas syringae B728a)

6e-103

3) hrpZ1
( NP_791209.1 )

type III restriction system endonuclease

NC_004578
(Pseudomonas syringae DC3000)

1e-59

• Sequence Alignments

1) hrpZ1 in NC_005773


> L41862|2|G2|790916|AAB00136.1|Pseudomonas_syringae_Race_4|+|479..1516|hrpZ|-|-
Length=345

 Score =  400 bits (1503),  Expect = 7e-113, Method: Compositional matrix adjust.
 Identities = 328/330 (99%), Positives = 330/330 (100%), Gaps = 0/330 (0%)

Query  16   MALVLIRPetettgsstssRALQEVIAQLAQELTHNGQLDESSPlgkllgkamaasgkag  75
            MALVLIRPETETTG+STSSRALQEVIAQLAQELTHNGQLDESSPLGKLLGKAMAASGKAG
Sbjct  16   MALVLIRPETETTGPSTSSRALQEVIAQLAQELTHNGQLDESSPLGKLLGKAMAASGKAG  75

Query  76   gglEDIKAALDTLIHEKLGDNFGASADNASDTGQHDLMTQVLNGLAKSMLNDLLTKQDDG  135
            GGLEDIKAALDTLIHEKLGDNFGASADNASDTGQHDLMTQVLNGLAKSMLNDLLTKQDDG
Sbjct  76   GGLEDIKAALDTLIHEKLGDNFGASADNASDTGQHDLMTQVLNGLAKSMLNDLLTKQDDG  135

Query  136  TRFSEDDMPMLKKIAEFMDDNPAQFPKPDSGSWVNELKEDNFLDGDETAQFRSALDIIGQ  195
            TRFSEDDMPMLKKIAEFMDDNPAQFPKPDSGSWVNELKEDNFLDGDETAQFRSALDIIGQ
Sbjct  136  TRFSEDDMPMLKKIAEFMDDNPAQFPKPDSGSWVNELKEDNFLDGDETAQFRSALDIIGQ  195

Query  196  QLGSQQNaagglagdssggglgsPVSNTENSPGSLGDPLIDANTGPASNSNSNGDVGQLI  255
            QLGSQQNAAGGLAGDSSGGGLGSPVSNTENSPGSLGDPLIDANTGPASNSNSNGDVGQLI
Sbjct  196  QLGSQQNAAGGLAGDSSGGGLGSPVSNTENSPGSLGDPLIDANTGPASNSNSNGDVGQLI  255

Query  256  GELIDRGLQSVLAGGGLGTPVSTANTALVPGGEQPNQDlgqllggllqkglEATLQDAGQ  315
            GELIDRGLQSVLAGGGLGTPVSTANTALVPGGEQPNQDLGQLLGGLLQKGLEATLQDAGQ
Sbjct  256  GELIDRGLQSVLAGGGLGTPVSTANTALVPGGEQPNQDLGQLLGGLLQKGLEATLQDAGQ  315

Query  316  TGTGVQSSAAQVALLLVNMLLQSTKNQAAA  345
            TGTGVQSS+AQVALLLVNMLLQSTKNQAAA
Sbjct  316  TGTGVQSSTAQVALLLVNMLLQSTKNQAAA  345

2) Psyr_1193 in NC_007005


> L41862|2|G2|790916|AAB00136.1|Pseudomonas_syringae_Race_4|+|479..1516|hrpZ|-|-
Length=345

 Score =  366 bits (1377),  Expect = 6e-103, Method: Compositional matrix adjust.
 Identities = 255/334 (77%), Positives = 307/334 (92%), Gaps = 2/334 (0%)

Query  12   QTPAMALVLVRPETETTGASSSSKALQEVVVKLAEELMRNGQLDDSSPLGKLLAKSMAAD  71
            Q+P+MALVL+RPETETTG+S+SS+ALQEV+ +LA+EL +NGQLD+SSPLGKLL+K+MAA 
Sbjct  12   QSPSMALVLIRPETETTGPSTSSRALQEVIAQLAQELTHNGQLDESSPLGKLLGKAMAAS  71

Query  72   GKAGGGIEDVIAALDKLIHEKLGDNFGASADNASGTGQQDLMTQVLNGLAKSMLDDLLTK  131
            GKAGGG+ED+ AALD LIHEKLGDNFGASADNAS+TGQ+DLMTQVLNGLAKSML+DLLTK
Sbjct  72   GKAGGGLEDIKAALDTLIHEKLGDNFGASADNASDTGQHDLMTQVLNGLAKSMLNDLLTK  131

Query  132  QDGGTSFSEDDMPMLNKIAQFMDDNPAQFPKPDSGSWVNELKEDNFLDGDETAAFRSALD  191
            QD+GT FSEDDMPML+KIA+FMDDNPAQFPKPDSGSWVNELKEDNFLDGDETA FRSALD
Sbjct  132  QDDGTRFSEDDMPMLKKIAEFMDDNPAQFPKPDSGSWVNELKEDNFLDGDETAQFRSALD  191

Query  192  IIGQQLGNQQSgtg--glagtggglgtPssfssnssGVKGDPLIDANTGPGDSGTTSGEA  249
            IIGQQLG+QQ+++G  +  ++GGGLG+P S + NS+G  GDPLIDANTGP+ ++ ++G+ 
Sbjct  192  IIGQQLGSQQNAAGGLAGDSSGGGLGSPVSNTENSPGSLGDPLIDANTGPASNSNSNGDV  251

Query  250  GQLIGELIDRGLQSVLAGGGLGTPVNTPQTGTAANggqsaqdldqllgglllkglEATLK  309
            GQLIGELIDRGLQSVLAGGGLGTPV+T++T+  + G Q+ QDL+QLLGGLL KGLEATL+
Sbjct  252  GQLIGELIDRGLQSVLAGGGLGTPVSTANTALVPGGEQPNQDLGQLLGGLLQKGLEATLQ  311

Query  310  DAGQTATDVQSSAAQIATLLVSTLLQGTRNQAAA  343
            DAGQT+T+VQSS+AQ+A LLV+ LLQ+T+NQAAA
Sbjct  312  DAGQTGTGVQSSTAQVALLLVNMLLQSTKNQAAA  345

3) hrpZ1 in NC_004578


> L41862|2|G2|790916|AAB00136.1|Pseudomonas_syringae_Race_4|+|479..1516|hrpZ|-|-
Length=345

 Score =  223 bits (829),  Expect = 1e-59, Method: Compositional matrix adjust.
 Identities = 215/375 (58%), Positives = 287/375 (77%), Gaps = 42/375 (11%)

Query  1    MQALN-SISSLQTSA-SLFPVSLNSDVSANTSTSSKELKAVIDQLVQALTQSGQLDETSP  58
            MQ+L+ + S+LQ+++ +L  +  +++ ++  STSS+ L+ VI QL Q LT++GQLDE+SP
Sbjct  1    MQSLSLNSSTLQSPSMALVLIRPETE-TTGPSTSSRALQEVIAQLAQELTHNGQLDESSP  59

Query  59   LGKMLAKAMAADGKSANSIDDITASLDKLIHEKLGDNFgasagigaggggggiggagsgs  118
            LGK+L+KAMAA GK++ +++DI A+LD LIHEKLGDNFGASA+ +++ G           
Sbjct  60   LGKLLGKAMAASGKAGGGLEDIKAALDTLIHEKLGDNFGASADNASDTGQH---------  110

Query  119  gvggglssdagagqsDLMSQVLNGLGKAVLDDLLTPSGEGGTTFSSDDMPTLEKVAQFMD  178
                           DLM+QVLNGL+K++L+DLLT   ++GT FS DDMP L K+A+FMD
Sbjct  111  ---------------DLMTQVLNGLAKSMLNDLLT-KQDDGTRFSEDDMPMLKKIAEFMD  154

Query  179  DNKAQFPTRDGGSWMNELKEDNGLDAQETAQFRSALDVIGQQLGQQQGDASGVT---SGG  235
            DN AQFP  D+GSW+NELKEDN LD++ETAQFRSALD+IGQQLG QQ  A+G++   SGG
Sbjct  155  DNPAQFPKPDSGSWVNELKEDNFLDGDETAQFRSALDIIGQQLGSQQNAAGGLAGDSSGG  214

Query  236  GLGSPVSDS-----SLGNPAIDANTGPAANGNASVDVGQLIGQLIDRglqsvssggglgT  290
            GLGSPVS++     SLG+P IDANTGPA+N+N++ DVGQLIG+LIDRGLQSV +GGGLGT
Sbjct  215  GLGSPVSNTENSPGSLGDPLIDANTGPASNSNSNGDVGQLIGELIDRGLQSVLAGGGLGT  274

Query  291  PVDNSTQPTGGTPAANPTGNVSNqdlgqllsgllqrglEATLQDAGNTGadlqssaaqva  350
            PV      + +  A  P G+ +NQDLGQLL+GLLQ+GLEATLQDAG+TG+++QSS+AQVA
Sbjct  275  PV------STANTALVPGGEQPNQDLGQLLGGLLQKGLEATLQDAGQTGTGVQSSTAQVA  328

Query  351  aqlINALLQGTNNQT  365
              L+N LLQ+T+NQ+
Sbjct  329  LLLVNMLLQSTKNQA  343