> AY463491|2|G2|38619362|AAR25630.1|Pseudomonas_sp._KD|+|1504..2619|hrpJ|-|type
III secretion protein HrpJ
Length=371
Score = 304 bits (1140), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 174/336 (52%), Positives = 261/336 (78%), Gaps = 5/336 (1%)
Query 1 MKIVAPPILPTHTVTPIRAVTPAARAIPGTLSSEKGTSSQQVSRFAAA--LVRNSRILRQ 58
MKI + ++ H+V P + PA +S+K ++++ + ++ L+++S+ L Q
Sbjct 1 MKIPGFTPVAIHSVNPA-SARPALTLRRRRRTSQKIRAPRRTRWRDSPRHLIQQSKELSQ 59
Query 59 RELIASRNALQSRAVKLGELYQLLMSANDTGLDNAARLLRKKLLQENDTE--LEQVLEFA 116
REL+ + LQS+A+KLGELYQ+LM++ND LD+A R LR+ L ++ E L +VL FA
Sbjct 60 RELVIGGTVLQSKAMKLGELYQMLMGSNDKRLDEAVRTLRQTLKRQRSDESLLGRVLAFA 119
Query 117 DGDAAKAHVVLQAARKQAEEDGAEGEYVALTQTLKQLRRKFGPHARAGINTARAFGRQNV 176
+GD+AKAHV+LQAA KQA+++GA +E L++ LR++ G +ARAGINTARAF+R +
Sbjct 120 GGDPAKAHVMLQAAMKQAHHEGARDEHQVLSDHASALRQRHGNRARAGINTARAFSRSGL 179
Query 177 DNKRRTALRNLYGVAVSGQPNVTGLIEALINEQEETGDFDLNLRDMRRAIADDLSAITPS 236
D++RR LR+LY +V GQP +++LI++L+ +++ ++F+ LRD+RRAIADDL+++ PS
Sbjct 180 DSQRRKNLRELYYNGVVGQPTISSLIDTLLGQEDGEAQFEPTLRDLRRAIADDLASVNPS 239
Query 237 ASHEQLRTLMHGLTTARHVTTLLRGCEHLLGRMRNKNPDLKVDPPAFLKHLLTLTANGMN 296
++++QLRTLMHG+ TA+HV+TLL++CEHLLGRMR+KNP+L+V +P+FLKHLL L+++GMN
Sbjct 240 SPRQQLRTLMHGVNTAKHVSTLLKSCEHLLGRMRDKNPQLQVSAPTFLKHLLVLSGKGMN 299
Query 297 VNQTLQLTQHIGGARLKNQLAFLNGLRPMLMQLPIL 332
+++TLQLTQ IGGA+LK+QL+FLNGLRPML QLPIL
Sbjct 300 LQETLQLTQFIGGAQLKHQLSFLNGLRPMLQQLPIL 335 |