>AY330642|2|G1|37811871|AAR03939.1|Helicobacter_pylori_Du52:2|+|1948..5910|cagA|HP0547|CagA
Length = 3963
Score = 2564 bits (6615), Expect = 0.0
Identities = 1408/1568 (90%)
Strand = Plus / Plus
Query: 1032 attacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatgggga 1091
|||||||||||||||| ||| ||| ||||||||||||||||||||| || |||||||||
Sbjct: 869 attacaagttcaaccaattattgatccacaataacgctctgtcttctgtgttaatgggga 928
Query: 1092 gtcatagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctg 1151
|||||| |||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 929 gtcataatggcatagaacctgaaaaagtttcattgttgtatggaaacaatggtggtcctg 988
Query: 1152 aagctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtgg 1211
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 989 aagctaggcatgattggaacgctaccgttggttataaaaaccaacaaggcgacaatgtgg 1048
Query: 1212 ccacactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaa 1271
| |||||||| |||| |||| | ||||| ||||| |||||||||||||| ||| || |
Sbjct: 1049 ctacactcattaatgtgcatatgaaaaatggcagtgggttagtcatagcaggtggtgaga 1108
Query: 1272 atgggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaac 1331
| ||| ||||||||||||| || |||||||||||| |||||| |||||||||||| |||
Sbjct: 1109 aaggggttaacaaccctagtttttatctctacaaagaagaccagctcacaggcttgaaac 1168
Query: 1332 aagcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaa 1391
|||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 1169 aagcattgagtcaagaagagatccaaaacaaagtagatttcatggaatttcttgcacaaa 1228
Query: 1392 acaacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattg 1451
| || |||| | |||| |||||||||| | ||||||||||||| ||||||| ||||||||
Sbjct: 1229 ataatgctaaactagacaacttgagcgtgaaagagaaagaaaaattccaaaatgagattg 1288
Query: 1452 gaaatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctt 1511
| |||| ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 1289 aagattttcaaaaagactctaaggcttatttagacgccctagggaatgatcacattgctt 1348
Query: 1512 ttgtttctaaaaaagaccaaaagcatttagctttggttactgagtttggtaatggggaat 1571
|||||||||||||||| ||||| ||||||||||| ||||||| |||||||||||||| |
Sbjct: 1349 ttgtttctaaaaaagatcaaaaacatttagctttaattactgaatttggtaatggggatt 1408
Query: 1572 tgagctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaa 1631
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 1409 tgagctacactctcaaagattatgggaaaaaacaagataaagctttagatagggagataa 1468
Query: 1632 aaaccactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaatt 1691
||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 1469 aaaccactcttcaaggtaacctaaaacatgatggcgtgatgtttgttaattattctaatt 1528
Query: 1692 tcaaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgttt 1751
|||||||||||||||||||||||||||||||| ||||| | || ||||||||||||||||
Sbjct: 1529 tcaaatacaccaacgcctccaagagtcctgataagggtgtgggtgctacgaatggcgttt 1588
Query: 1752 cccatttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtc 1811
||||||| ||||||||| |||||||||| |||||||||||||||||| |||||||| ||
Sbjct: 1589 cccatttagaagcaaatcttagcaaggtagctgtctttaatttgcctaatttaaataatc 1648
Query: 1812 tcgctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgc 1871
|||||||| |||||| | |||||| | ||||| ||||||||| ||||||||||||
Sbjct: 1649 tcgctatcactagttatataaggcgagacttagaagataaactgtgggctaaaggattgt 1708
Query: 1872 ccccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttg 1931
||||| |||| |||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct: 1709 ccccacaagaaactaataagctcatcaaagactttttgaacagcgacaaggaattggttg 1768
Query: 1932 aaaaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacg 1991
|||||| || | | |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1769 aaaaagtttcaaatctcaataaagctgtagctgaagctaaaaacacaggcaattatgacg 1828
Query: 1992 gagtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagc 2051
||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 1829 aagtgaaaaaagctcagaaagatcttgaaaaatctctaaggaaacgagagcatttagaga 1888
Query: 2052 aagaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaag 2111
||||| || ||||||||| ||||||| | || ||||||||||| ||||||||| ||||
Sbjct: 1889 aagaagtagtgaaaaaattggagaacagaaacgacaacaaaaatagaatggaagcaaaag 1948
Query: 2112 ttcaagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataagg 2171
|||||||||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct: 1949 ctcaagctaacagccaaaaagataagatttttgcaattatcaatgaagaggctggtaagg 2008
Query: 2172 aagcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgata 2231
|||||||| ||||||| || ||||||| ||||||||||||| |||||||||| |||||
Sbjct: 2009 aagcaagagcggccgcttgcgttcagaattttaaaggcatcagaagggaattgtctgata 2068
Query: 2232 aagttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaa 2291
| || |||| ||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 2069 agcttgaaaacatcaacaagaatttgaaagactttgataaatcttttgatgaatttaaaa 2128
Query: 2292 gtggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaagctcgg 2351
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
Sbjct: 2129 atggcaaaaataaggatttcagcaagacagaagaaacgctaaaagcccttaaaagctcag 2188
Query: 2352 tgaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagctt 2411
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2189 tgaaagatttaggtatcaatccagaatggatttcaaaagttgaaaaccttaatacagctt 2248
Query: 2412 tgaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2471
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2249 tgaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacgcaagcaaaaagcg 2308
Query: 2472 accttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgaca 2531
||||||||||||| ||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 2309 accttgaaaattcaattaaagatgtgatcatcaatcaaaagataacggataaagttgaca 2368
Query: 2532 atctcaatcaggctgtattaagggctaaagcgataggcgattttagtggggtagagcaag 2591
|||||||||| ||||||| || ||||| || | ||||||||| |||||||||||||||
Sbjct: 2369 atctcaatcaagctgtatcaatagctaaggcaacaggcgatttcagtggggtagagcaaa 2428
Query: 2592 agctagcc 2599
|||||||
Sbjct: 2429 tgctagcc 2436
Score = 873 bits (2253), Expect = e-254
Identities = 475/518 (92%)
Strand = Plus / Plus
Query: 56 cggcttttaatccacaacaatttatcaataatcttcaagtggcttttattaaacttgata 115
|||||||||| || || ||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct: 41 cggcttttaacccgcagcaacttatcaataatcttcaagtggcttttcttaaagttgata 100
Query: 116 gtgctgtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaacgatagggata 175
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 101 acgctgtcgcttcatttgatcctgatcaaaaaccaatcgttgataagaatgatagggata 160
Query: 176 acaggcaagcttttaatgtaatctcgcaattaagggaagaatacgccaataaagcgatca 235
| |||||||||||| | ||||||||| ||||||| |||| ||| |||||||||||||
Sbjct: 161 ataggcaagcttttgagaaaatctcgcagctaagggaggaattcgctaataaagcgatca 220
Query: 236 aaaatcccaccaaaaagaatcagtatttttcagactttatcgataaaagcaatgatttga 295
||||||| |||||||||||||||||||||||| ||||||| ||| ||||||||||| |
Sbjct: 221 aaaatcctaccaaaaagaatcagtatttttcaagctttatcagtaagagcaatgatttaa 280
Query: 296 tcaacaaaaacgatctcattgatacagattcttccacaaagagctttgaaaaatttgggg 355
|||||||| || |||||||||||||| |||||||| |||||||||| | |||||||||
Sbjct: 281 tcaacaaagacagtctcattgatacaggttcttccataaagagctttcagaaatttggga 340
Query: 356 ctcagcgttaccaaatttttatgaattgggtgtcccatcaaaaagatccgtctaaaatca 415
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 341 ctcagcgttaccaaatttttatgaattgggtgtcccatcaaaaagatccatctaaaatca 400
Query: 416 acacccaaaaaatccgagattttatggaaaatatcatacaaccccctatctctgatgata 475
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acacccaaaaaatccgaggttttatggaaaatatcatacaaccccctatctctgatgata 460
Query: 476 aagaaaaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcataggga 535
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 461 aagagaaagcggagtttttgaggtctgccaaacaagcttttgcaggaattatcataggaa 520
Query: 536 accaaacccgatcggatgaaaaattcatgggcgttttt 573
|||||| |||||||||| |||||||||||||||| |||
Sbjct: 521 accaaatccgatcggatcaaaaattcatgggcgtgttt 558
Score = 641 bits (1653), Expect = e-184
Identities = 364/402 (91%)
Strand = Plus / Plus
Query: 3006 ctagttcgcaagcgaaattggacaattacgctactaacagccacacacgcattaatagca 3065
|||||| | |||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 3563 ctagtttgtcagcgaaattggacaattacgctactaacagccacgcaggcattaatagca 3622
Query: 3066 atgtcaaaaatggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctg 3125
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3623 atgtcaaaaatggaacaatcaatgaaaaagcgaccggcatgctaacgcaaaaaaaccctg 3682
Query: 3126 agtggctcaagcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgt 3185
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3683 agtggctcaagctcgtgaatgataagatagttgcacataatgtgggaagcgctcctttgt 3742
Query: 3186 caggttatgataaaattggattcaaccaaaagaatatgaaaggttattctgattcgttca 3245
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3743 cagcgtatgataaaattggattcaaccaaaagaatatgaaagattattctgattcgttca 3802
Query: 3246 ggttttccaccaagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttt 3305
||||||||||| ||||||||||||||||||| |||||||||||| |||| ||| |||
Sbjct: 3803 agttttccaccaggttgagcaatgccgtaaaagacattaagtctggctttgtacaatttt 3862
Query: 3306 taaccgattgcattt-ctgcaggaacttacagcccgaagaaagc------ggaacatgga 3358
||||| | ||||||| || ||||| |||||||| || |||||| ||||||||||
Sbjct: 3863 taacc-aatgcattttctacaggatcttacagcttgatgaaagcaaatgtggaacatgga 3921
Query: 3359 gttaaaaatattaatacaaaaagtggtttccagaaatcttaa 3400
|| ||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 3922 gtcaaaaatactaatacgaaaggtggtttccaaaaatcttaa 3963
Score = 354 bits (913), Expect = 9e-98
Identities = 201/231 (87%)
Strand = Plus / Plus
Query: 2766 atctcggcggatcttcccctttgaaaaggtatgctaaagttgatgatctcagtaaggtag 2825
||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 3332 atctcggcggacctttccctttgaaaaggcatgataaagttgatgatctcagtaaggtag 3391
Query: 2826 ggctttcaagggagcaagaattgaatgagaaaattggcaatctcaatcaggcagtgtcag 2885
||||||||||| | ||||||||| | ||||||||| |||||||||||| || || ||||
Sbjct: 3392 ggctttcaaggaatcaagaattggctcagaaaattgacaatctcaatcaagcggtatcag 3451
Query: 2886 aagctaaagcaggttcttttggcaacctagaacaaatgatggatggactcaaagattcta 2945
|||||||| || || ||||| ||||||||| |||||||| || | ||||||||||||
Sbjct: 3452 aagctaaaacatgtcattttgacaacctagatcaaatgatagacgagctcaaagattctg 3511
Query: 2946 caaaaaagaatgttgtgaatctatggtttgaaggtgcaagaaaagtgccta 2996
|||||||||||||| ||||||||| ||||| |||||| |||||||||||
Sbjct: 3512 caaaaaagaatgttatgaatctatatgttgaaagtgcaaaaaaagtgccta 3562
Score = 332 bits (858), Expect = 3e-91
Identities = 187/209 (89%)
Strand = Plus / Plus
Query: 813 ctgttggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctg 872
||| |||||||||| | |||||||||||||| ||||| ||||||||| |||||||||| |
Sbjct: 620 ctggtggggattggttggatatttttttatcatttgtgtttaacaaaaaacaatcttccg 679
Query: 873 atctcaaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctcta 932
||||||||||||||||||||||||| ||| |||||||| ||| | |||||||| |||
Sbjct: 680 atctcaaagaaacgctcaatcaagaaccagttcctcatgtccaaccagatgtagccacta 739
Query: 933 cccccacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtg 992
|| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccaccactgacatacaaagcttaccgcctgaagctagggatttgcttgatgaaaggggta 799
Query: 993 atttttctaaattcactcttggtgatatg 1021
|||||||||||||||||||||| ||||||
Sbjct: 800 atttttctaaattcactcttggcgatatg 828
Score = 174 bits (450), Expect = 9e-44
Identities = 97/106 (92%)
Strand = Plus / Plus
Query: 2660 gctacgattgatgatctcggcggatcttcccctttgaaaaggtatgctaaagttgatgat 2719
|||||||||||||||||||||||| ||| ||||||||||||| ||| |||||||||||||
Sbjct: 3217 gctacgattgatgatctcggcggacctttccctttgaaaaggcatgataaagttgatgat 3276
Query: 2720 ctcagtaaggtagggcaatcagatagccctgaacccatttacgcta 2765
|||||||||||||||| |||| || || |||||||||||||||||
Sbjct: 3277 ctcagtaaggtagggctttcagctaaccatgaacccatttacgcta 3322
Score = 174 bits (450), Expect = 9e-44
Identities = 97/106 (92%)
Strand = Plus / Plus
Query: 2660 gctacgattgatgatctcggcggatcttcccctttgaaaaggtatgctaaagttgatgat 2719
|||||||||||||||||||||||| ||| ||||||||||||| ||| |||||||||||||
Sbjct: 2911 gctacgattgatgatctcggcggacctttccctttgaaaaggcatgataaagttgatgat 2970
Query: 2720 ctcagtaaggtagggcaatcagatagccctgaacccatttacgcta 2765
|||||||||||||||| |||| || || |||||||||||||||||
Sbjct: 2971 ctcagtaaggtagggctttcagctaaccatgaacccatttacgcta 3016
Score = 120 bits (310), Expect = 2e-27
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 2766 atctcggcggatcttcccctttgaaaaggtatgctaaagttgatgatctcagtaaggtag 2825
||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 3026 atctcggcggacctttccctttgaaaaggcatgataaagttgatgatctcagtaaggtag 3085
Query: 2826 ggctttca 2833
||||||||
Sbjct: 3086 ggctttca 3093
Score = 80 bits (207), Expect = 2e-15
Identities = 44/46 (96%)
Strand = Plus / Plus
Query: 767 gatgaatctttgaaagagaggcaagaagcacaaaacaatggagagc 812
|||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 559 gatgaatctttgaaagagaggcaagaagcagaaaaaaatggagagc 604
Score = 37 bits (94), Expect = 3e-02
Identities = 20/22 (91%)
Strand = Plus / Plus
Query: 2635 tcaaaaaaatgaaagtttcaat 2656
||||||||||||| |||||||
Sbjct: 2478 tcaaaaaaatgaagatttcaat 2499
Score = 30 bits (78), Expect = 2e+00
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccat 17
||| |||||||||||||
Sbjct: 1 atgactaacgaaaccat 17
Score = 6 bits (14), Expect = 6e+07
Identities = 3/3 (100%)
Strand = Plus / Plus
Query: 2657 tat 2659
|||
Sbjct: 2519 tat 2521 |