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Homologs of i-inlE gene of AJ888460

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) i-inlE
( YP_004854960.1 )

putative internalin E

NC_016011
(Listeria ivanovii PAM 55)

1e-105

100

2) i-inlI
( YP_004854955.1 )

putative internalin I

NC_016011
(Listeria ivanovii PAM 55)

2e-69

3) LIV_1691
( YP_004855441.1 )

putative soluble interanlin

NC_016011
(Listeria ivanovii PAM 55)

1e-52

4) i-inlH
( YP_004854956.1 )

putative internalin H

NC_016011
(Listeria ivanovii PAM 55)

2e-51

5) i-inlC
( YP_004856221.1 )

putative soluble internalin

NC_016011
(Listeria ivanovii PAM 55)

3e-37

6) i-inlL
( YP_004854951.1 )

putative internalin L

NC_016011
(Listeria ivanovii PAM 55)

7e-34

• Sequence Alignments

1) i-inlE in NC_016011


> AJ888460|2|G2|60417509|CAI59954.1|Listeria_ivanovii_ATCC_19119|+|1564..2259|i-inlE|-|i-InlE 
protein
Length=231

 Score =  375 bits (1408),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 231/231 (100%), Positives = 231/231 (100%), Gaps = 0/231 (0%)

Query  1    MRKSNWLKSVVVAMLVLIVGFCINIGSGTKVHAANILHPMPINQIFPDPDLAKVVKRTLG  60
            MRKSNWLKSVVVAMLVLIVGFCINIGSGTKVHAANILHPMPINQIFPDPDLAKVVKRTLG
Sbjct  1    MRKSNWLKSVVVAMLVLIVGFCINIGSGTKVHAANILHPMPINQIFPDPDLAKVVKRTLG  60

Query  61   KQSVTDVVSQKELDSVQGLNGNESNIKSLEGLQHFNKLEVLFLASNQIKDITPLKNLTNL  120
            KQSVTDVVSQKELDSVQGLNGNESNIKSLEGLQHFNKLEVLFLASNQIKDITPLKNLTNL
Sbjct  61   KQSVTDVVSQKELDSVQGLNGNESNIKSLEGLQHFNKLEVLFLASNQIKDITPLKNLTNL  120

Query  121  KVLDLKVNQISDLTPLYGLKNLTSLDVVYQKIVETPVTYEPDLVIPVTVKKPDGSLVTPK  180
            KVLDLKVNQISDLTPLYGLKNLTSLDVVYQKIVETPVTYEPDLVIPVTVKKPDGSLVTPK
Sbjct  121  KVLDLKVNQISDLTPLYGLKNLTSLDVVYQKIVETPVTYEPDLVIPVTVKKPDGSLVTPK  180

Query  181  CITDNGAYIYDDIIWNLPAYKKEVSYKFGERIQVGKVSTTFTGMVKQPLTR  231
            CITDNGAYIYDDIIWNLPAYKKEVSYKFGERIQVGKVSTTFTGMVKQPLTR
Sbjct  181  CITDNGAYIYDDIIWNLPAYKKEVSYKFGERIQVGKVSTTFTGMVKQPLTR  231

2) i-inlI in NC_016011


> AJ888460|2|G2|60417509|CAI59954.1|Listeria_ivanovii_ATCC_19119|+|1564..2259|i-inlE|-|i-InlE 
protein
Length=231

 Score =  254 bits (949),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 150/211 (72%), Positives = 182/211 (87%), Gaps = 0/211 (0%)

Query  14   VGLCINTGSGTKVQAAKISHPMPINKIFPDPDLANAVKQNLGKKSVTDCVSQRALDKVRK  73
            VG+CIN GSGTKV+AA+I HPMPIN+IFPDPDLA+ VK+ LGK+SVTD VSQ+ LD V+ 
Sbjct  19   VGFCINIGSGTKVHAANILHPMPINQIFPDPDLAKVVKRTLGKQSVTDVVSQKELDSVQG  78

Query  74   FNGIQANIESLEGIQFFTKLEELFLSSNQIKDISPLKDLTELRVLDLKMNEIRDLTPLRG  133
            +NG ++NI SLEG+Q F KLE LFL+SNQIKDI+PLK+LT+L+VLDLK+N+I DLTPL G
Sbjct  79   LNGNESNIKSLEGLQHFNKLEVLFLASNQIKDITPLKNLTNLKVLDLKVNQISDLTPLYG  138

Query  134  LSKITWLDVTYQKIVEDSVPFESDLFIPITVQKIDGSLITPKCITDNGVYMCDGITWNLP  193
            L ++T LDV YQKIVE +V +E+DL IP+TV+K DGSL+TPKCITDNG Y+ D+I WNLP
Sbjct  139  LKNLTSLDVVYQKIVETPVTYEPDLVIPVTVKKPDGSLVTPKCITDNGAYIYDDIIWNLP  198

Query  194  GYKKEVSYKFWEYINVGKTRTTFTGMVKQPL  224
            +YKKEVSYKF E I+VGK  TTFTGMVKQPL
Sbjct  199  AYKKEVSYKFGERIQVGKVSTTFTGMVKQPL  229

3) LIV_1691 in NC_016011


> AJ888460|2|G2|60417509|CAI59954.1|Listeria_ivanovii_ATCC_19119|+|1564..2259|i-inlE|-|i-InlE 
protein
Length=231

 Score =  199 bits (740),  Expect = 1e-52, Method: Compositional matrix adjust.
 Identities = 123/251 (50%), Positives = 172/251 (69%), Gaps = 22/251 (8%)

Query  1    MNKKEWLKNIIGVMLITAILMCVNTSLESKVQAANIPHPMPIDQIFPDPGLAKVVKQALG  60
            M K +WLK+++  ML+  +  C+N +  +KV+AANI HPMPI+QIFPDP+LAKVVK++LG
Sbjct  1    MRKSNWLKSVVVAMLVLIVGFCINIGSGTKVHAANILHPMPINQIFPDPDLAKVVKRTLG  60

Query  61   KQSVTDVVSQGELDGVQELIGGACNIKSIEGLQHFSNLKELLLPYNHISDISALASLSQL  120
            KQSVTDVVSQ ELD+VQ L G   NIKS+EGLQHF++L  L+L+ N+I DI++L +L++L
Sbjct  61   KQSVTDVVSQKELDSVQGLNGNESNIKSLEGLQHFNKLEVLFLASNQIKDITPLKNLTNL  120

Query  121  EVISLNHNKLKDIDSLVNLTKLRCLYVSNNQLRDLWALEGLKNLESVDAEEQTCTNNPVV  180
             V+ L+ N++ D+ +         LY             GLKNL S+D   Q   + PV 
Sbjct  121  KVLDLKVNQISDLTP---------LY-------------GLKNLTSLDVVYQKIVETPVT  158

Query  181  YKPKVVIPNTIKNMSGKSVTPNFISDNGEYINTDVIWELPTYTTEVSYRFKDILNIGKDY  240
            Y P +VIP T+K+  G  VTP+ I+DNG YI  D+IW+LP+Y  EVSY+F + +++GK  
Sbjct  159  YEPDLVIPVTVKKPDGSLVTPKCITDNGAYIYDDIIWNLPAYKKEVSYKFGERIQVGKVS  218

Query  241  VLFSGVVIQPL  251
              F+G+V QPL
Sbjct  219  TTFTGMVKQPL  229

4) i-inlH in NC_016011


> AJ888460|2|G2|60417509|CAI59954.1|Listeria_ivanovii_ATCC_19119|+|1564..2259|i-inlE|-|i-InlE 
protein
Length=231

 Score =  196 bits (726),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 125/251 (50%), Positives = 171/251 (69%), Gaps = 22/251 (8%)

Query  1    MKKKDWLKSVVVAILVLMVGFCANIYFGTKVYAAGILHSIPINEIFQDYGLANAVKRQLG  60
            M+K +WLKSVVVA+LVL+VGFC NI  GTKV AA ILH++PIN+IF D +LA+ VKR LG
Sbjct  1    MRKSNWLKSVVVAMLVLIVGFCINIGSGTKVHAANILHPMPINQIFPDPDLAKVVKRTLG  60

Query  61   KQSVTEVVSQRELDEIQKLNGNGCNIKSIKGVEYLTNLTKLYLSYNHISDISALASLSQL  120
            KQSVT+VVSQ+ELD +Q LNGN  NIKS+ G++ + +L  L+L+ N+I DI++L +L++L
Sbjct  61   KQSVTDVVSQKELDSVQGLNGNESNIKSLEGLQHFNKLEVLFLASNQIKDITPLKNLTNL  120

Query  121  EVLSLKQNKLKDINSLANLTKLRCLYVSNNQLRDLWALEGLKNLEYVDAEEQTCTNNPVV  180
             VL LK N++ D+ +         LY             GLKNL  +D   Q   + PV 
Sbjct  121  KVLDLKVNQISDLTP---------LY-------------GLKNLTSLDVVYQKIVETPVT  158

Query  181  YKPKVVIPNTIKDMSGKSVTPNFISDNGEYINTDVIWELPTYTTEVSYRFKDILNIGKDY  240
            Y P +VIP T+K   G  VTP+ I+DNG YI  D+IW+LP+Y  EVSY+F + +++GK  
Sbjct  159  YEPDLVIPVTVKKPDGSLVTPKCITDNGAYIYDDIIWNLPAYKKEVSYKFGERIQVGKVS  218

Query  241  VLFSGVVIQPV  251
              F+G+V QP+
Sbjct  219  TTFTGMVKQPL  229


 Score = 32.7 bits (104),  Expect = 0.021, Method: Compositional matrix adjust.
 Identities = 14/48 (30%), Positives = 33/48 (69%), Gaps = 0/48 (0%)

Query  260  NAPSINQTLPAASLTEALKKGLRKKAVTDISPKSELDKANEFHDENRG  307
            ++ +INQ +P + L+  +K+ L K++VTD+ ++ ELD  + +++++  
Sbjct  38   HPMPINQIFPDPDLAKVVKRTLGKQSVTDVVSQKELDSVQGLNGNESN  85

5) i-inlC in NC_016011


> AJ888460|2|G2|60417509|CAI59954.1|Listeria_ivanovii_ATCC_19119|+|1564..2259|i-inlE|-|i-InlE 
protein
Length=231

 Score =  148 bits (545),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 119/294 (41%), Positives = 167/294 (57%), Gaps = 65/294 (22%)

Query  1    MKKNNWLQNVVVAMLVLIVGLCISTGSGTKVQAASILRPMPINQVFPDPGLANAVKQNLG  60
            M+K+NWL++VVVAMLVLIVG+CI+ GSGTKV+AA+IL+PMPINQ+FPDP+LA+ VK+ LG
Sbjct  1    MRKSNWLKSVVVAMLVLIVGFCINIGSGTKVHAANILHPMPINQIFPDPDLAKVVKRTLG  60

Query  61   KQSVTDLVSQKELDGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKL  120
            KQSVTD+VSQKELD+VQ +NG++SNI+SL G+Q F +L  L L+ NQI D++PLK+LT+L
Sbjct  61   KQSVTDVVSQKELDSVQGLNGNESNIKSLEGLQHFNKLEVLFLASNQIKDITPLKNLTNL  120

Query  121  EELYVNRNKLKNLNGIPSACLARLFVDNNELRDTDSLIHLKNLEILSIRNNKLRSIVALG  180
              L ++ N++ +L                      +L  LKNL  L +  +K+    ++ 
Sbjct  121  KVLDLKVNQISDLT---------------------PLYGLKNLTSLDVVYQKIVE-TPVT  158

Query  181  FLSKLEVLDLHGNEITNTGGLNRLKKVNWIDLTGQKCVNEPVRYQPELYITNTVKDPDGR  240
            + + L +       + + +G           L   KC+ +   Y   +Y        D  
Sbjct  159  YEPDLVI----PVTVKKPDG----------SLVTPKCITDNGAY---IY-------DDII  194

Query  241  WIAPYYISNNGKYVDGCVMWELPVYTDEVSYKFSEYISVGETEAIFDGTVVQPL  294
            W  P Y                     EVSYKF+E I VG   + F G V QPL
Sbjct  195  WNLPAY-------------------KKEVSYKFGERIQVGKVSTTFTGMVKQPL  229

6) i-inlL in NC_016011


> AJ888460|2|G2|60417509|CAI59954.1|Listeria_ivanovii_ATCC_19119|+|1564..2259|i-inlE|-|i-InlE 
protein
Length=231

 Score =  136 bits (501),  Expect = 7e-34, Method: Compositional matrix adjust.
 Identities = 100/226 (45%), Positives = 140/226 (62%), Gaps = 24/226 (10%)

Query  28   ETKAQAISIPYAMPINQIFPDYNLADVVKQHLGKQSVTDVVSQRDLDRVQNFNGNCCNIT  87
             TK +A +I  +MPINQIFPD +LA VVK+ LGKQSVTDVVSQ++LD VQ +NGN  NI 
Sbjct  28   GTKVHAANILHPMPINQIFPDPDLAKVVKRTLGKQSVTDVVSQKELDSVQGLNGNESNIK  87

Query  88   SMEGVQYFRHLKQLSMSYNQISDVSVLTPLRQLEILILEHNKLEDIDVLVNIPTLEGLYV  147
            S+EG+Q F  L  L ++ NQI D++ L  L +L +L L  N++ D         L  LY 
Sbjct  88   SLEGLQHFNKLEVLFLASNQIKDITPLKNLTNLKVLDLKVNQISD---------LTPLY-  137

Query  148  GNNALRDLWALEAMGNLKYVDASEQKCINKPVVYQPNLVITNTIKDMIGKPIVPNFISDN  207
               +L++L +L+ +    Y     QK ++ PV Y+P+LVI  T+K   G  + P+ I+DN
Sbjct  138  ---GLKNLTSLDVV----Y-----QKIVETPVTYEPDLVIPVTVKKPDGSLVTPKCITDN  185

Query  208  GAYVNTDVTWDLPNPHSITEVSYSFEEVQHIGKEKVLFSGVVIQPI  253
            GAY+  D+ W+LP      EVSY F E  ++GK    F+G+V QP+
Sbjct  186  GAYIYDDIIWNLPAYKK--EVSYKFGERIQVGKVSTTFTGMVKQPL  229