Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of unnamed gene of AJ236887

235

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) CKO_00903
( YP_001452489.1 )

hypothetical protein

NC_009792
(Citrobacter koseri ATCC BAA-895)

2e-23

100

2) alpA2
( YP_002920255.1 )

putative transcriptional regulator

NC_012731
(Klebsiella pneumoniae NTUH-K2044)

2e-23

100

3) YPDSF_1221
( YP_001162590.1 )

transcriptional regulator

NC_009381
(Yersinia pestis Pestoides F)

2e-23

100

4) YPTS_1706
( YP_001872132.1 )

phage transcriptional regulator AlpA

NC_010634
(Yersinia pseudotuberculosis PB1/+)

2e-23

100

5) KPK_1789
( YP_002237636.1 )

transcriptional regulator AlpA family

NC_011283
(Klebsiella pneumoniae 342)

4e-21

6) alpA
( YP_049728.1 )

prophage regulatory protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

9e-21

7) Q7S_09575
( YP_005401716.1 )

putative prophage regulatory protein

NC_017047
(Rahnella aquatilis HX2)

1e-20

8) Rahaq2_1737
( YP_005199750.1 )

putative transcriptional regulator

NC_016818
(Rahnella aquatilis CIP 78.65)

1e-20

9) KOX_24535
( YP_005020861.1 )

putative prophage regulatory protein

NC_016612
(Klebsiella oxytoca KCTC 1686)

2e-20

10) Dd586_1466
( YP_003333039.1 )

phage transcriptional regulator AlpA

NC_013592
(Dickeya dadantii Ech586)

2e-20

11) W5S_1631
( YP_006282595.1 )

Phage transcriptional regulator, AlpA

NC_017845
(Pectobacterium sp. SCC3193)

3e-20

12) Dd586_2658
( YP_003334205.1 )

phage transcriptional regulator AlpA

NC_013592
(Dickeya dadantii Ech586)

5e-20

13) Pecwa_1687
( YP_003259081.1 )

phage transcriptional regulator, AlpA

NC_013421
(Pectobacterium wasabiae WPP163)

7e-20

14) Dd1591_1496
( YP_003003833.1 )

phage transcriptional regulator AlpA

NC_012912
(Dickeya zeae Ech1591)

1e-19

15) PMI2608
( YP_002152324.1 )

prophage regulatory protein

NC_010554
(Proteus mirabilis HI4320)

1e-19

16) alpA
( YP_003883704.1 )

DNA-binding protein

NC_014500
(Dickeya dadantii 3937)

2e-19

17) ASA_3077
( YP_001142822.1 )

prophage regulatory protein

NC_009348
(Aeromonas salmonicida A449)

1e-13

18) W5S_0465
( YP_006281463.1 )

Phage transcriptional regulator, AlpA

NC_017845
(Pectobacterium sp. SCC3193)

3e-13

19) CKO_04347
( YP_001455839.1 )

hypothetical protein

NC_009792
(Citrobacter koseri ATCC BAA-895)

9e-13

20) PSEBR_a2011
( YP_004353256.1 )

AlpA family transcriptional regulator

NC_015379
(Pseudomonas brassicacearum NFM421)

7e-12

21) Alide2_3071
( YP_004388933.1 )

phage transcriptional regulator AlpA

NC_015422
(Alicycliphilus denitrificans K601)

2e-11

22) alpA1
( YP_003039844.1 )

predicted phage transcriptional regulator

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

2e-11

23) alpA1
( YP_003042806.1 )

putative dna binding protein

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

2e-11

24) SVI_1340
( YP_003556089.1 )

DNA-binding protein

NC_014012
(Shewanella violacea DSS12)

3e-11

25) Shewmr7_1777
( YP_737827.1 )

phage transcriptional regulator, AlpA

NC_008322
(Shewanella sp. MR-7)

3e-11

26) Fraau_1984
( YP_005378053.1 )

putative transcriptional regulator

NC_017033
(Frateuria aurantia DSM 6220)

3e-11

27) Mpe_A2332
( YP_001021523.1 )

phage transcriptional regulator, AlpA

NC_008825
(Methylibium petroleiphilum PM1)

4e-11

28) alpa
( YP_004713542.1 )

phage transcriptional regulator AlpA

NC_015740
(Pseudomonas stutzeri ATCC 17588)

4e-11

29) Marme_2105
( YP_004313189.1 )

phage transcriptional regulator, AlpA

NC_015276
(Marinomonas mediterranea MMB-1)

4e-11

30) Fraau_3057
( YP_005379067.1 )

putative transcriptional regulator

NC_017033
(Frateuria aurantia DSM 6220)

5e-11

31) Tgr7_2812
( YP_002514872.1 )

phage transcriptional regulator AlpA

NC_011901
(Thioalkalivibrio sulfidophilus HL-EbGR7)

5e-11

32) SEEH1578_21295
( YP_008248310.1 )

Phage AlpA Prophage CP4-57 regulatory protein (AlpA)

NC_021810
(Salmonella enterica 41578)

6e-11

33) SU5_02999
( YP_006088611.1 )

Phage_AlpA Prophage CP4-57 regulatory protein (AlpA)

NC_017623
(Salmonella enterica B182)

6e-11

34) CFSAN002069_19815
( YP_008252705.1 )

DNA-binding protein

NC_021812
(Salmonella enterica CFSAN002069)

6e-11

35) Bpet1289
( YP_001629893.1 )

transcriptional regulator

NC_010170
(Bordetella petrii DSM 12804)

6e-11

36) alpA1
( NP_992437.1 )

transcriptional regulator

NC_005810
(Yersinia pestis 91001)

7e-11

37) A1122_19325
( YP_005523499.1 )

AlpA family transcriptional regulator

NC_017168
(Yersinia pestis A1122)

7e-11

38) YpAngola_A1363
( YP_001605891.1 )

AlpA family transcriptional regulator

NC_010159
(Yersinia pestis Angola)

7e-11

39) YPA_0571
( YP_650484.1 )

transcriptional regulator

NC_008150
(Yersinia pestis Antiqua)

7e-11

40) YPC_1143
( YP_005623090.1 )

DNA-binding protein

NC_017265
(Yersinia pestis Harbin 35)

7e-11

41) YPN_2905
( YP_648832.1 )

transcriptional regulator

NC_008149
(Yersinia pestis Nepal516)

7e-11

42) YPDSF_2604
( YP_001163945.1 )

transcriptional regulator

NC_009381
(Yersinia pestis Pestoides F)

7e-11

43) Pecwa_1667
( YP_003259064.1 )

phage transcriptional regulator, AlpA

NC_013421
(Pectobacterium wasabiae WPP163)

7e-11

44) Despr_0272
( YP_004193747.1 )

phage transcriptional regulator, AlpA

NC_014972
(Desulfobulbus propionicus DSM 2032)

1e-10

45) alpa
( YP_004714828.1 )

phage transcriptional regulator AlpA

NC_015740
(Pseudomonas stutzeri ATCC 17588)

1e-10

46) A458_06100
( YP_006456889.1 )

phage transcriptional regulator AlpA

NC_018028
(Pseudomonas stutzeri CCUG 29243)

1e-10

47) I636_19330
( YP_008185805.1 )

hypothetical protein

NC_021714
(Alteromonas macleodii Ionian Sea UM4b)

9e-11

48) Alide_2723
( YP_004127341.1 )

prophage cp4-57 regulatory

NC_014910
(Alicycliphilus denitrificans BC)

9e-11

49) Alide2_1737
( YP_004387641.1 )

phage transcriptional regulator AlpA

NC_015422
(Alicycliphilus denitrificans K601)

9e-11

50) Tmz1t_1000
( YP_002354662.1 )

phage transcriptional regulator AlpA

NC_011662
(Thauera sp. MZ1T)

9e-11

51) ECSF_2233
( YP_003350223.1 )

putative transcriptional regulator

NC_013654
(Escherichia coli SE15)

1e-10

52) alpA3
( YP_001630044.1 )

transcriptional regulator

NC_010170
(Bordetella petrii DSM 12804)

1e-10

53) Dd1591_0481
( YP_003002845.1 )

phage transcriptional regulator AlpA

NC_012912
(Dickeya zeae Ech1591)

1e-10

54) Neut_0125
( YP_746378.1 )

phage transcriptional regulator AlpA

NC_008344
(Nitrosomonas eutropha C91)

2e-10

55) Sbal223_0381
( YP_002356338.1 )

phage transcriptional regulator AlpA

NC_011663
(Shewanella baltica OS223)

2e-10

56) YE105_C2856
( YP_004299055.1 )

phage transcriptional regulator, AlpA

NC_015224
(Yersinia enterocolitica 105.5R(r))

2e-10

57) Dda3937_01305
( YP_003881185.1 )

DNA-binding protein

NC_014500
(Dickeya dadantii 3937)

2e-10

58) Dd586_3773
( YP_003335309.1 )

phage transcriptional regulator AlpA

NC_013592
(Dickeya dadantii Ech586)

2e-10

59) Dd703_3550
( YP_002989130.1 )

phage transcriptional regulator AlpA

NC_012880
(Dickeya dadantii Ech703)

2e-10

60) Dd1591_3697
( YP_003005981.1 )

phage transcriptional regulator AlpA

NC_012912
(Dickeya zeae Ech1591)

2e-10

61) Dd1591_3709
( YP_003005992.1 )

phage transcriptional regulator AlpA

NC_012912
(Dickeya zeae Ech1591)

2e-10

62) Spea_1260
( YP_001501122.1 )

phage transcriptional regulator AlpA

NC_009901
(Shewanella pealeana ATCC 700345)

2e-10

63) Tola_2395
( YP_002893578.1 )

phage transcriptional regulator, AlpA

NC_012691
(Tolumonas auensis DSM 9187)

2e-10

64) B479_23190
( YP_007231470.1 )

phage transcriptional regulator, AlpA

NC_019905
(Pseudomonas putida PC9)

2e-10

65) ebD61
( YP_158418.1 )

transcriptional regulator

NC_006513
(Aromatoleum aromaticum EbN1)

3e-10

66) Shewmr4_2784
( YP_734912.1 )

phage transcriptional regulator, AlpA

NC_008321
(Shewanella sp. MR-4)

3e-10

67) PSEBR_a730
( YP_004351888.1 )

AlpA family transcriptional regulator

NC_015379
(Pseudomonas brassicacearum NFM421)

3e-10

68) Pmen_1159
( YP_001186658.1 )

phage transcriptional regulator AlpA

NC_009439
(Pseudomonas mendocina ymp)

3e-10

69) Bpet2882
( YP_001631492.1 )

hypothetical protein

NC_010170
(Bordetella petrii DSM 12804)

4e-10

70) YSA_00735
( YP_006384291.1 )

phage transcriptional regulator AlpA

NC_017986
(Pseudomonas putida ND6)

5e-10

71) Sputcn32_3522
( YP_001185030.1 )

phage transcriptional regulator AlpA

NC_009438
(Shewanella putrefaciens CN-32)

5e-10

72) AXYL_01049
( YP_003977110.1 )

prophage CP4-57 regulatory protein AlpA

NC_014640
(Achromobacter xylosoxidans A8)

5e-10

73) T1E_4236
( YP_006534859.1 )

phage transcriptional regulator, AlpA

NC_018220
(Pseudomonas putida DOT-T1E)

5e-10

74) Pput_2913
( YP_001268226.1 )

phage transcriptional regulator AlpA

NC_009512
(Pseudomonas putida F1)

5e-10

75) PputW619_3285
( YP_001750139.1 )

phage transcriptional regulator AlpA

NC_010501
(Pseudomonas putida W619)

6e-10

76) XC_2072
( YP_243152.1 )

hypothetical protein

NC_007086
(Xanthomonas campestris 8004)

6e-10

77) xccb100_2403
( YP_001903808.1 )

phage-related regulatory protein

NC_010688
(Xanthomonas campestris B100)

6e-10

78) FTN_0015
( YP_897680.1 )

AlpA family regulatory protein

NC_008601
(Francisella novicida U112)

6e-10

79) Fphi_1927
( YP_001677705.1 )

AlpA family regulatory protein

NC_010336
(Francisella philomiragia ATCC 25017)

6e-10

80) L483_12005
( YP_008094187.1 )

AlpA family transcriptional regulator

NC_021491
(Pseudomonas putida H8234)

6e-10

81) NH44784_010881
( YP_008028188.1 )

Transcriptional regulator in PFGI-1-like cluster

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

7e-10

82) HEAR1968
( YP_001100239.1 )

CP4-57 prophage; transcriptional acitvator of a P4-like cryptic prophage

NC_009138
(Herminiimonas arsenicoxydans )

7e-10

83) Plav_3376
( YP_001414637.1 )

phage transcriptional regulator AlpA

NC_009719
(Parvibaculum lavamentivorans DS-1)

7e-10

84) XCAW_01643
( YP_007649638.1 )

Phage-related regulatory protein

NC_020815
(Xanthomonas citri Aw12879)

7e-10

85) NAL212_2044
( YP_004295042.1 )

phage transcriptional regulator, AlpA

NC_015222
(Nitrosomonas sp. AL212)

8e-10

86) FN3523_0015
( YP_005823069.1 )

regulatory protein, AlpA family

NC_017449
(Francisella novicida 3523)

9e-10

87) Thivi_2364
( YP_006414434.1 )

putative transcriptional regulator

NC_018012
(Thiocystis violascens DSM 198)

1e-09

88) NH44784_010091
( YP_008028110.1 )

Transcriptional regulator in PFGI-1-like cluster

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

1e-09

89) Ajs_1320
( YP_985616.1 )

phage transcriptional regulator AlpA

NC_008782
(Acidovorax sp. JS42)

1e-09

90) alpA1
( YP_001629631.1 )

transcriptional regulator

NC_010170
(Bordetella petrii DSM 12804)

1e-09

91) alpA
( YP_584437.1 )

DNA-binding transcriptional activator

NC_007973
(Cupriavidus metallidurans CH34)

1e-09

92) PADK2_12295
( YP_006482444.1 )

hypothetical protein

NC_018080
(Pseudomonas aeruginosa DK2)

1e-09

93) PLES_27091
( YP_002440302.1 )

hypothetical protein

NC_011770
(Pseudomonas aeruginosa LESB58)

1e-09

94) SMD_1576
( YP_006184307.1 )

transcriptional regulator

NC_017671
(Stenotrophomonas maltophilia D457)

1e-09

95) TMO_c0096
( YP_006373688.1 )

phage-like protein

NC_017958
(Tistrella mobilis KA081020-065)

1e-09

96) PCNPT3_08010
( YP_007640378.1 )

DNA-binding protein

NC_020802
(Psychromonas sp. CNPT3)

9e-10

97) Hhal_1156
( YP_001002734.1 )

phage transcriptional regulator AlpA

NC_008789
(Halorhodospira halophila SL1)

1e-09

98) Alide_3995
( YP_004128588.1 )

prophage cp4-57 regulatory

NC_014910
(Alicycliphilus denitrificans BC)

1e-09

99) alpA2
( YP_001632930.1 )

hypothetical protein

NC_010170
(Bordetella petrii DSM 12804)

1e-09

100) Daci_4141
( YP_001565157.1 )

phage transcriptional regulator AlpA

NC_010002
(Delftia acidovorans SPH-1)

1e-09

101) NCGM2_1450
( YP_005979701.1 )

hypothetical protein

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

1e-09

102) alpA
( YP_005937940.1 )

phage transcriptional regulator AlpA

NC_017532
(Pseudomonas stutzeri DSM 4166)

1e-09

103) XF1786
( NP_299074.1 )

hypothetical protein

NC_002488
(Xylella fastidiosa 9a5c)

1e-09

104) PputGB1_4755
( YP_001670977.1 )

phage transcriptional regulator AlpA

NC_010322
(Pseudomonas putida GB-1)

2e-09

105) NH44784_008971
( YP_008027999.1 )

Transcriptional regulator in PFGI-1-like cluster

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

2e-09

106) Ajs_1454
( YP_985740.1 )

phage transcriptional regulator AlpA

NC_008782
(Acidovorax sp. JS42)

2e-09

107) XCV2415
( YP_364146.1 )

AlpA family regulatory protein

NC_007508
(Xanthomonas campestris 85-10)

2e-09

108) Dsui_0171
( YP_005026432.1 )

putative transcriptional regulator

NC_016616
(Dechlorosoma suillum PS)

2e-09

109) AHML_05600
( YP_008042251.1 )

putative transcriptional regulator

NC_021290
(Aeromonas hydrophila ML09-119)

3e-09

110) Pput_3427
( YP_001268737.1 )

phage transcriptional regulator AlpA

NC_009512
(Pseudomonas putida F1)

3e-09

111) Mesci_3844
( YP_004143011.1 )

prophage CP4-57 regulator

NC_014923
(Mesorhizobium ciceri WSM1271)

3e-09

112) lpa_00278
( YP_003617395.1 )

hypothetical protein

NC_014125
(Legionella pneumophila 2300/99 Alcoy)

3e-09

113) LPC_0208
( YP_001249552.1 )

prophage CP4-57 regulatory protein AlpA

NC_009494
(Legionella pneumophila Corby)

3e-09

114) Fphi_1931
( YP_001678565.1 )

phage transcriptional regulator, AlpA

NC_010336
(Francisella philomiragia ATCC 25017)

4e-09

115) L483_22060
( YP_008096178.1 )

AlpA family transcriptional regulator

NC_021491
(Pseudomonas putida H8234)

4e-09

116) NH8B_1936
( YP_004847165.1 )

phage transcriptional regulator AlpA

NC_016002
(Pseudogulbenkiania sp. NH8B)

4e-09

117) PFLU1981
( YP_002871606.1 )

putative phage-like protein

NC_012660
(Pseudomonas fluorescens SBW25)

4e-09

118) Shewmr4_1700
( YP_733832.1 )

phage transcriptional regulator, AlpA

NC_008321
(Shewanella sp. MR-4)

5e-09

119) Tbd_2677
( YP_316435.1 )

transcriptional regulator

NC_007404
(Thiobacillus denitrificans ATCC 25259)

6e-09

120) PSF113_3346
( YP_005208742.1 )

transcriptional regulator in PFGI-1-like cluster

NC_016830
(Pseudomonas fluorescens F113)

8e-09

121) F382_00585
( YP_008233008.1 )

DNA-binding protein

NC_021743
(Mannheimia haemolytica D153)

8e-09

122) J451_00555
( YP_008221519.1 )

DNA-binding protein

NC_021739
(Mannheimia haemolytica D174)

8e-09

123) MHH_c21210
( YP_007883922.1 )

putative bacteriophage transcriptional regulator

NC_021082
(Mannheimia haemolytica M42548)

8e-09

124) D650_15180
( YP_007666295.1 )

bacteriophage transcriptional regulator

NC_020833
(Mannheimia haemolytica USDA-ARS-USMARC-183)

8e-09

125) N220_07615
( YP_008338969.1 )

DNA-binding protein

NC_021883
(Mannheimia haemolytica USMARC_2286)

8e-09

126) Ping_0243
( YP_941709.1 )

phage transcriptional regulator AlpA

NC_008709
(Psychromonas ingrahamii 37)

9e-09

127) alpA
( YP_003469248.1 )

CP4-57 prophage; transcriptional acitvator of a P4-like cryptic prophage

NC_013892
(Xenorhabdus bovienii SS-2004)

9e-09

128) CV_0648
( NP_900318.1 )

prophage regulatory protein

NC_005085
(Chromobacterium violaceum ATCC 12472)

1e-08

129) SPO3898
( YP_167161.1 )

DNA-binding protein

NC_003911
(Ruegeria pomeroyi DSS-3)

1e-08

130) CGSHiGG_04055
( YP_001292166.1 )

transcriptional regulator

NC_009567
(Haemophilus influenzae PittGG)

1e-08

131) Nit79A3_1498
( YP_004694728.1 )

phage transcriptional regulator AlpA

NC_015731
(Nitrosomonas sp. Is79A3)

1e-08

132) Sbal223_0384
( YP_002356341.1 )

phage transcriptional regulator AlpA

NC_011663
(Shewanella baltica OS223)

1e-08

133) Maqu_0653
( YP_957938.1 )

phage transcriptional regulator AlpA

NC_008740
(Marinobacter aquaeolei VT8)

1e-08

134) Aave_0567
( YP_968946.1 )

phage transcriptional regulator AlpA

NC_008752
(Acidovorax citrulli AAC00-1)

2e-08

135) alpA
( YP_003468543.1 )

prophage regulatory protein

NC_013892
(Xenorhabdus bovienii SS-2004)

2e-08

136) ETAC_13010
( YP_007630083.1 )

hypothetical protein

NC_020796
(Edwardsiella tarda C07-087)

2e-08

137) NT08PM_0296
( YP_006239208.1 )

Vis

NC_017764
(Pasteurella multocida 3480)

2e-08

138) XNC1_4250
( YP_003714346.1 )

phage-like protein

NC_014228
(Xenorhabdus nematophila ATCC 19061)

3e-08

139) YE105_C1330
( YP_004297529.1 )

Phage transcriptional regulator, AlpA

NC_015224
(Yersinia enterocolitica 105.5R(r))

3e-08

140) UWK_00658
( YP_007466892.1 )

putative transcriptional regulator

NC_020304
(Desulfocapsa sulfexigens DSM 10523)

3e-08

141) A79E_4453
( YP_006638213.1 )

transcriptional regulator

NC_018522
(Klebsiella pneumoniae 1084)

3e-08

142) A464_4539
( YP_008325131.1 )

hypothetical protein

NC_021870
(Salmonella bongori N268-08)

3e-08

143) EC55989_0270
( YP_002401396.1 )

Phage transcriptional regulator, AlpA

NC_011748
(Escherichia coli 55989)

3e-08

144) t2651
( NP_806362.1 )

hypothetical protein

NC_004631
(Salmonella enterica Ty2)

3e-08

145) HS_1424
( YP_719636.1 )

phage transcriptional regulator, AlpA

NC_008309
(Haemophilus somnus 129PT)

4e-08

146) KP1_0641
( YP_002917564.1 )

hypothetical protein

NC_012731
(Klebsiella pneumoniae NTUH-K2044)

4e-08

147) KPN_04704
( YP_001338321.1 )

hypothetical protein

NC_009648
(Klebsiella pneumoniae subsp. pneumoniae MGH 78578)

4e-08

148) ETA_24310
( YP_001908354.1 )

hypothetical protein

NC_010694
(Erwinia tasmaniensis Et1/99)

4e-08

149) ECABU_c03460
( YP_006104481.1 )

putative phage transcriptional AlpA-like regulator

NC_017631
(Escherichia coli ABU 83972)

6e-08

150) ETEC_0317
( YP_006113906.1 )

putative prophage transcriptional regulator

NC_017633
(Escherichia coli ETEC H10407)

6e-08

151) ELI_00935
( YP_457076.1 )

hypothetical protein

NC_007722
(Erythrobacter litoralis HTCC2594)

6e-08

152) ROD_20611
( YP_003365615.1 )

hypothetical protein

NC_013716
(Citrobacter rodentium ICC168)

6e-08

153) Pmen_3994
( YP_001189473.1 )

phage transcriptional regulator AlpA

NC_009439
(Pseudomonas mendocina ymp)

7e-08

154) SerAS9_4092
( YP_004507452.1 )

phage transcriptional regulator, AlpA

NC_015567
(Serratia plymuthica AS9)

7e-08

155) SerAS12_4093
( YP_004502500.1 )

phage transcriptional regulator, AlpA

NC_015566
(Serratia sp. AS12)

7e-08

156) SerAS13_4093
( YP_006026914.1 )

phage transcriptional regulator AlpA

NC_017573
(Serratia sp. AS13)

7e-08

157) AHML_07190
( YP_008042569.1 )

DNA-binding protein

NC_021290
(Aeromonas hydrophila ML09-119)

8e-08

158) Dda3937_00943
( YP_003884284.1 )

regulatory protein

NC_014500
(Dickeya dadantii 3937)

1e-07

159) BRADO6209
( YP_001208071.1 )

prophage CP4-57 regulator

NC_009445
(Bradyrhizobium sp. ORS278)

1e-07

160) A3UG_04565
( YP_006476360.1 )

regulatory protein

NC_018079
(Enterobacter cloacae SDM)

9e-08

161) alpA
( YP_003467237.1 )

CP4-57 prophage; transcriptional acitvator of a P4-like cryptic prophage

NC_013892
(Xenorhabdus bovienii SS-2004)

9e-08

162) alpA
( YP_003713511.1 )

prophage CP4-57 regulatory protein

NC_014228
(Xenorhabdus nematophila ATCC 19061)

9e-08

163) BBta_0434
( YP_001236626.1 )

prophage CP4-57 regulatory protein

NC_009485
(Bradyrhizobium sp. BTAi1)

9e-08

164) XBJ1_2671
( YP_003468559.1 )

hypothetical protein

NC_013892
(Xenorhabdus bovienii SS-2004)

1e-07

165) ENC_02870
( YP_007844426.1 )

Predicted transcriptional regulator

NC_021046
(Enterobacter cloacae NCTC 9394)

1e-07

166) ECP_1932
( YP_669834.1 )

regulatory protein

NC_008253
(Escherichia coli 536)

1e-07

167) i14_2232
( YP_006154341.1 )

putative regulatory protein

NC_017652
(Escherichia coli clone D i14)

1e-07

168) i02_2232
( YP_006149422.1 )

putative regulatory protein

NC_017651
(Escherichia coli clone D i2)

1e-07

169) CKO_03476
( YP_001454992.1 )

hypothetical protein

NC_009792
(Citrobacter koseri ATCC BAA-895)

1e-07

170) CFSAN002050_11655
( YP_008260247.1 )

AlpA family transcriptional regulator

NC_021818
(Salmonella enterica CFSAN002050)

1e-07

171) S70_17370
( YP_006217975.1 )

phage-like protein

NC_017731
(Providencia stuartii MRSN 2154)

1e-07

172) XNC1_2586
( YP_003712790.1 )

phage-like protein

NC_014228
(Xenorhabdus nematophila ATCC 19061)

2e-07

173) Caul_1143
( YP_001682771.1 )

phage transcriptional regulator AlpA

NC_010338
(Caulobacter sp. K31)

2e-07

174) ESA_00625
( YP_001436745.1 )

hypothetical protein

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

2e-07

175) ABLL_2170
( YP_005554362.1 )

hypothetical protein

NC_017192
(Arcobacter sp. L)

2e-07

176) Hneap_0482
( YP_003262384.1 )

phage transcriptional regulator AlpA

NC_013422
(Halothiobacillus neapolitanus c2)

2e-07

177) PCA10_07550
( YP_008101092.1 )

hypothetical protein

NC_021499
(Pseudomonas resinovorans NBRC 106553)

2e-07

178) W5S_3564
( YP_006284506.1 )

Phage transcriptional regulator, AlpA

NC_017845
(Pectobacterium sp. SCC3193)

2e-07

179) Mesop_4439
( YP_004612956.1 )

phage transcriptional regulator AlpA

NC_015675
(Mesorhizobium opportunistum WSM2075)

2e-07

180) RPE_3260
( YP_782174.1 )

phage transcriptional regulator, AlpA

NC_008435
(Rhodopseudomonas palustris BisA53)

2e-07

181) Alide2_2695
( YP_004388566.1 )

phage transcriptional regulator AlpA

NC_015422
(Alicycliphilus denitrificans K601)

2e-07

182) RPC_0150
( YP_530044.1 )

phage transcriptional regulator, AlpA

NC_007925
(Rhodopseudomonas palustris BisB18)

3e-07

183) XNC1_3442
( YP_003713601.1 )

phage-like protein

NC_014228
(Xenorhabdus nematophila ATCC 19061)

4e-07

184) HP15_1087
( YP_005884779.1 )

prophage CP4-57 regulatory

NC_017506
(Marinobacter adhaerens HP15)

4e-07

185) YSA_03456
( YP_006385751.1 )

phage transcriptional regulator AlpA

NC_017986
(Pseudomonas putida ND6)

4e-07

186) OA238_c14340
( YP_007699043.1 )

prophage regulatory protein-like protein

NC_020908
(Octadecabacter arcticus 238)

4e-07

187) ECED1_3320
( YP_002399199.1 )

putative regulatory protein from prophage (AlpA family)

NC_011745
(Escherichia coli ED1a)

5e-07

188) ECED1_2322
( YP_002398256.1 )

putative DNA binding protein from phage origin

NC_011745
(Escherichia coli ED1a)

5e-07

189) A79E_1776
( YP_006635583.1 )

regulatory protein

NC_018522
(Klebsiella pneumoniae 1084)

5e-07

190) ECA2918
( YP_051009.1 )

phage-like protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

5e-07

191) Entcl_1099
( YP_003940650.1 )

phage transcriptional regulator AlpA

NC_014618
(Enterobacter cloacae SCF1)

5e-07

192) STBHUCCB_9230
( YP_005216499.1 )

hypothetical protein

NC_016832
(Salmonella enterica P-stx-12)

6e-07

193) t04980
( YP_006892414.1 )

DNA binding protein

NC_004631
(Salmonella enterica Ty2)

6e-07

194) TY21A_04400
( YP_007925202.1 )

hypothetical protein

NC_021176
(Salmonella enterica Ty21a)

6e-07

195) AciX8_1756
( YP_005057125.1 )

phage transcriptional regulator, AlpA

NC_016631
(Granulicella mallensis MP5ACTX8)

6e-07

196) Sala_3216
( YP_611148.1 )

phage transcriptional regulator, AlpA

NC_008036
(Sphingopyxis alaskensis RB2256)

6e-07

197) Xaut_0443
( YP_001415358.1 )

phage transcriptional regulator AlpA

NC_009720
(Xanthobacter autotrophicus Py2)

7e-07

198) SLG_29070
( YP_004836039.1 )

putative AlpA family transcriptional regulator

NC_015976
(Sphingobium sp. SYK-6)

8e-07

199) ambt_20755
( YP_004469444.1 )

phage transcriptional regulator, AlpA

NC_015554
(Alteromonas sp. SN2)

8e-07

200) CSSP291_03135
( YP_007439514.1 )

phage transcriptional regulator AlpA

NC_020260
(Cronobacter sakazakii Sp291)

8e-07

201) Snov_2642
( YP_003694555.1 )

phage transcriptional regulator AlpA

NC_014217
(Starkeya novella DSM 506)

8e-07

202) alpA
( YP_006028805.1 )

DNA-binding transcriptional activator; CP4-57 prophage

NC_017574
(Ralstonia solanacearum Po82)

1e-06

203) Tcr_2205
( YP_873949.1 )

Phage AlpA family protein

NC_007520
(Thiomicrospira crunogena XCL-2)

1e-06

204) Pecwa_1730
( YP_003259124.1 )

phage transcriptional regulator, AlpA

NC_013421
(Pectobacterium wasabiae WPP163)

1e-06

205) RPD_2277
( YP_569410.1 )

prophage CP4-57 regulatory

NC_007958
(Rhodopseudomonas palustris BisB5)

1e-06

206) SeSA_A2907
( YP_002115719.1 )

hypothetical protein

NC_011094
(Salmonella enterica CVM19633)

2e-06

207) ECO55CA74_24450
( YP_006161979.1 )

putative phage DNA binding protein

NC_017656
(Escherichia coli RM12579)

2e-06

208) SARI_00926
( YP_001569981.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

2e-06

209) EC042_2847A
( YP_006097150.1 )

putative Putative DNA binding protein

NC_017626
(Escherichia coli 042)

3e-06

210) Z3946
( NP_289200.1 )

DNA binding protein

NC_002655
(Escherichia coli EDL933)

3e-06

211) ECs3513
( NP_311540.1 )

DNA binding protein

NC_002695
(Escherichia coli Sakai)

3e-06

212) ECSP_3595
( YP_003079433.1 )

DNA binding protein

NC_013008
(Escherichia coli TW14359)

3e-06

213) CDCO157_3275
( YP_006314142.1 )

putative DNA binding protein

NC_017906
(Escherichia coli Xuzhou21)

3e-06

214) Ser39006_1276
( YP_008521658.1 )

phage transcriptional regulator, AlpA

NC_022268
(Serratia sp. ATCC 39006)

5e-06

215) ETAF_2788
( YP_005700382.1 )

Transcriptional regulator, AlpA like protein

NC_017309
(Edwardsiella tarda FL6-60)

5e-06

216) KPK_4428
( YP_002240227.1 )

transcriptional regulator AlpA family

NC_011283
(Klebsiella pneumoniae 342)

5e-06

217) alpA
( YP_002389731.1 )

putative phage DNA binding protein

NC_011741
(Escherichia coli IAI1)

6e-06

218) ETAC_14735
( YP_007630428.1 )

putative phage DNA binding protein

NC_020796
(Edwardsiella tarda C07-087)

6e-06

219) PAGR_g2494
( YP_005993221.1 )

AlpA family phage transcriptional regulator

NC_017554
(Pantoea ananatis PA13)

7e-06

220) SARI_00214
( YP_001569303.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

8e-06

221) Ent638_2904
( YP_001177620.1 )

phage transcriptional regulator, AlpA

NC_009436
(Enterobacter sp. 638)

9e-06

222) DaAHT2_2155
( YP_003691443.1 )

phage transcriptional regulator, AlpA

NC_014216
(Desulfurivibrio alkaliphilus AHT2)

9e-06

223) SG2024
( YP_002226954.1 )

phage regulatory protein

NC_011274
(Salmonella enterica 287/91)

1e-05

224) SPUCDC_0899
( YP_008480588.1 )

putative phage regulatory protein

NC_022221
(Salmonella enterica CDC1983-67)

1e-05

225) SeD_A2334
( YP_002216088.1 )

hypothetical protein

NC_011205
(Salmonella enterica CT_02021853)

1e-05

226) SEN1998
( YP_002244091.1 )

phage regulatory protein

NC_011294
(Salmonella enterica P125109)

1e-05

227) SPUL_0899
( YP_005212129.1 )

putative phage regulatory protein

NC_016831
(Salmonella enterica RKS5078)

1e-05

228) I137_04075
( YP_008380346.1 )

DNA-binding protein

NC_021984
(Salmonella enterica S06004)

1e-05

229) SeAg_B2092
( YP_002146940.1 )

hypothetical protein

NC_011149
(Salmonella enterica SL483)

1e-05

230) PP1Y_AT16481
( YP_004534343.1 )

prophage regulatory protein

NC_015580
(Novosphingobium sp. PP1Y)

3e-05

231) Pecwa_1696
( YP_003259090.1 )

phage transcriptional regulator, AlpA

NC_013421
(Pectobacterium wasabiae WPP163)

3e-05

232) PputGB1_4148
( YP_001670374.1 )

phage transcriptional regulator AlpA

NC_010322
(Pseudomonas putida GB-1)

6e-05

233) Nitsa_1826
( YP_004168820.1 )

prophage cp4-57 regulatory

NC_014935
(Nitratifractor salsuginis DSM 16511)

6e-05

234) Ser39006_3441
( YP_008523823.1 )

phage transcriptional regulator, AlpA

NC_022268
(Serratia sp. ATCC 39006)

9e-05

235) W5S_1640
( YP_006282604.1 )

Phage transcriptional regulator, AlpA

NC_017845
(Pectobacterium sp. SCC3193)

3e-04

• Sequence Alignments

1) CKO_00903 in NC_009792


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score =  101 bits (367),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 61/61 (100%), Positives = 61/61 (100%), Gaps = 0/61 (0%)

Query  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60
           MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

2) alpA2 in NC_012731


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score =  101 bits (367),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 61/61 (100%), Positives = 61/61 (100%), Gaps = 0/61 (0%)

Query  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60
           MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

3) YPDSF_1221 in NC_009381


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score =  101 bits (367),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 61/61 (100%), Positives = 61/61 (100%), Gaps = 0/61 (0%)

Query  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60
           MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

4) YPTS_1706 in NC_010634


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score =  101 bits (367),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 61/61 (100%), Positives = 61/61 (100%), Gaps = 0/61 (0%)

Query  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60
           MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

5) KPK_1789 in NC_011283


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 94.1 bits (338),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 52/61 (86%), Positives = 58/61 (96%), Gaps = 0/61 (0%)

Query  6   MTTHQLLRLKQVEEKTGLKRSQIYLYMKNGDFPRSIKIGPASVAWLESELDEWINRKLSR  65
           MT+ QLLRL+QVE+KTGLKRSQIYLYMK+G FPRSIKIGPASVAWLESE+DEWIN+KLS 
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  66  R  66
           R
Sbjct  61  R  61

6) alpA in NC_004547


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 93.1 bits (334),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 53/61 (87%), Positives = 58/61 (96%), Gaps = 0/61 (0%)

Query  1   MTSHQLLRLKQVEVKTGLKRSQVYLYMKEGTFPRSIKIGPASVAWLESEIDEWINLKLAN  60
           MTS QLLRL+QVE KTGLKRSQ+YLYMKEG+FPRSIKIGPASVAWLESEIDEWIN KL++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

7) Q7S_09575 in NC_017047


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 92.8 bits (333),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 53/61 (87%), Positives = 57/61 (94%), Gaps = 0/61 (0%)

Query  1   MTSHQLLRLKQVEEKTGLKRSQIYLYMKDGTFPRSIKIGPASVAWLESEIDEWINIKLVR  60
           MTS QLLRL+QVE+KTGLKRSQIYLYMK+G+FPRSIKIGPASVAWLESEIDEWIN KL  
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

8) Rahaq2_1737 in NC_016818


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 92.6 bits (332),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 52/61 (86%), Positives = 56/61 (92%), Gaps = 0/61 (0%)

Query  1   MGPYQLLRLKQVEEKTGLKRSQIYLYMKGGTFPRSIKIGPASVAWLESEIDEWINIKLVR  60
           M +YQLLRL+QVE+KTGLKRSQIYLYMK G+FPRSIKIGPASVAWLESEIDEWIN KL  
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

9) KOX_24535 in NC_016612


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 91.8 bits (329),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 53/61 (87%), Positives = 56/61 (92%), Gaps = 0/61 (0%)

Query  1   MTSHQLLRLKQVEGKTGLKRSQIYLYMKDGTFPRSIKIGPASVAWLESEIDEWINIKLVR  60
           MTS QLLRL+QVE KTGLKRSQIYLYMK+G+FPRSIKIGPASVAWLESEIDEWIN KL  
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

10) Dd586_1466 in NC_013592


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 91.8 bits (329),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 52/61 (86%), Positives = 58/61 (96%), Gaps = 0/61 (0%)

Query  1   MSSHQLLRLRQVEEKTGLKRSQIYLYMKDGTFPASIKIGPASVAWLESEIDEWINFKLAN  60
           M+S QLLRLRQVE+KTGLKRSQIYLYMK+G+FP SIKIGPASVAWLESEIDEWIN KL++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

11) W5S_1631 in NC_017845


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 91.2 bits (327),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 52/61 (86%), Positives = 57/61 (94%), Gaps = 0/61 (0%)

Query  1   MTAHQLLRLKQVEVKTGLKRSQIYLYMKEGTFPSSIKIGPASVAWLESEIDEWINLKLAN  60
           MT+ QLLRL+QVE KTGLKRSQIYLYMKEG+FP SIKIGPASVAWLESEIDEWIN KL++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

12) Dd586_2658 in NC_013592


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 90.5 bits (324),  Expect = 5e-20, Method: Compositional matrix adjust.
 Identities = 52/61 (86%), Positives = 56/61 (92%), Gaps = 0/61 (0%)

Query  1   MTSHQLLRLKQVEVKTGLKRSQIYLYMKEGTFPSSIKIGPASVAWLESEIDGWINLKLAN  60
           MTS QLLRL+QVE KTGLKRSQIYLYMKEG+FP SIKIGPASVAWLESEID WIN KL++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

13) Pecwa_1687 in NC_013421


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 90.2 bits (323),  Expect = 7e-20, Method: Compositional matrix adjust.
 Identities = 52/61 (86%), Positives = 57/61 (94%), Gaps = 0/61 (0%)

Query  1   MTAHQLLRLKQVEVKTGLKRSQIYLYMKEGTFPSSIKIGPASVAWLESEIDEWINFKLAN  60
           MT+ QLLRL+QVE KTGLKRSQIYLYMKEG+FP SIKIGPASVAWLESEIDEWIN KL++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

14) Dd1591_1496 in NC_012912


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 89.4 bits (320),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 53/61 (87%), Positives = 57/61 (94%), Gaps = 0/61 (0%)

Query  1   MTSHQLLRLRQVEEKTGLKRSQIYLYMKYGTFPASIKIGPASVAWLESEIDEWINLKLAN  60
           MTS QLLRLRQVE+KTGLKRSQIYLYMK G+FP SIKIGPASVAWLESEIDEWIN KL++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

15) PMI2608 in NC_010554


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 89.1 bits (319),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 52/62 (84%), Positives = 58/62 (94%), Gaps = 1/62 (1%)

Query  1   MTSHQLLRLKQVEEKTGLKRSQIYLYMKGGSFPRSIIKVGPASVAWLESEIDEWINLKLA  60
           MTS QLLRL+QVE+KTGLKRSQIYLYMK G+FPRS IK+GPASVAWLESEIDEWIN KL+
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRS-IKIGPASVAWLESEIDEWINKKLS  59

Query  61  NR  62
           +R
Sbjct  60  DR  61

16) alpA in NC_014500


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 88.6 bits (317),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 53/61 (87%), Positives = 57/61 (94%), Gaps = 0/61 (0%)

Query  1   MTSHQLLRLRQVEEKTGLKRSQIYLYMKYGTFPASIKIGPASVAWLESEIDEWINFKLAN  60
           MTS QLLRLRQVE+KTGLKRSQIYLYMK G+FP SIKIGPASVAWLESEIDEWIN KL++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

17) ASA_3077 in NC_009348


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 69.7 bits (245),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 31/59 (53%), Positives = 47/59 (80%), Gaps = 0/59 (0%)

Query  5   NIRLLRIKDVISKVGLSKPTIYLRMKEGTFPRPVSIGPKSVAWVEHEINDWLTAKISER  63
           + +LLR+++V  K GL ++ IYL MKEG+FPR++ IGP SVAW+E EI++W+  K+S+R
Sbjct  3   SYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

18) W5S_0465 in NC_017845


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 67.9 bits (238),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 33/61 (55%), Positives = 49/61 (81%), Gaps = 0/61 (0%)

Query  1   MTDITLIRLSGVMKKTGLRKSWIYLLMKQGEFPQTVKIGARSVAWVESEVNDWIAARISQ  60
           MT   L+RL  V +KTGL++S IYL MK+G FP+++KIG+ SVAW+ESE+++WI  ++S+
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

19) CKO_04347 in NC_009792


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 66.6 bits (233),  Expect = 9e-13, Method: Compositional matrix adjust.
 Identities = 35/52 (68%), Positives = 43/52 (83%), Gaps = 0/52 (0%)

Query  1   MVSHRFLRLRQVLDKIGLKRSQVYAYMKTGHFLKSVRIGPASVVWLESEIDD  52
           M S ++LRLRQV +K GLKRSQ+Y YMK G F +S++IGPASV WLESEID+
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDE  52

20) PSEBR_a2011 in NC_015379


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 63.4 bits (221),  Expect = 7e-12, Method: Compositional matrix adjust.
 Identities = 28/57 (50%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  16  RILRRSDVEQKTGIKRAHIYNLMSQGKFPKSIRLGVRAVGWHAAEVDQWIAERLQDR  72
           ++LR  +VEQKTG+KR++IY  M +G FP+SI++G  +V+W  +E+D+WI  +L DR
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

21) Alide2_3071 in NC_015422


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 62.4 bits (217),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 27/57 (48%), Positives = 42/57 (74%), Gaps = 0/57 (0%)

Query  2   RILRLPAVSELTGLPRSTLYLYMSKGIFPKPIKLGVKSVGWIQEEVDQWLRQKMESR  58
           ++LRL  V + TGL RS +YLYM  G FP++IK+G  SV+W++ E+D+W+ +K+  R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

22) alpA1 in NC_012962


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 61.8 bits (215),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 31/61 (51%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  1   MAETTLIRLADVMKKVGLKKSWIYHLMQQGEFPKSVSLGARSVAWVEKEIDEWIINKINN  60
           M+   L+RL +V +K GLK+S IY  M++G FP+S+ +G+ SVAW+E EIDEWI +K+++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

23) alpA1 in NC_012962


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 61.8 bits (215),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 31/61 (51%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  1   MAETTLIRLADVMKKVGLKKSWIYHLMQQGEFPKSVSLGARSVAWVEKEIDEWIINKINN  60
           M+   L+RL +V +K GLK+S IY  M++G FP+S+ +G+ SVAW+E EIDEWI +K+++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

24) SVI_1340 in NC_014012


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 61.6 bits (214),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 28/57 (50%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  2   RLIKLHEVMSSTGLARSTIYKYLEEGCFPKSVSLGARAVAWVESEVQEWILSKIEER  58
           +L++L++V   TGL RS IY Y+ EG FP+S+ +G+ +VAW+ESE++EWI  K+ +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

25) Shewmr7_1777 in NC_008322


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 61.6 bits (214),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 27/57 (48%), Positives = 46/57 (81%), Gaps = 0/57 (0%)

Query  6   KLIRIKDVIDTTGLARSTIYKYVDKGIFPKAVKLGSRSVAWVESEVQEWILERIAQR  62
           +L+R+++V + TGL RS IY Y+  G FP+++K+G+ SVAW+ESE++EWI  ++++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

26) Fraau_1984 in NC_017033


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 61.3 bits (213),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 26/56 (47%), Positives = 42/56 (75%), Gaps = 0/56 (0%)

Query  13  RLIRIAEVERTTGLKRASIYRHMAAGTFPASIKLSPACTAWSEAEVQAWIAQRIAA  68
           +L+R+ +VE+ TGLKR+ IY  M  G+FP SIK++PA  AW E+E++ WI ++++ 
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

27) Mpe_A2332 in NC_008825


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 61.0 bits (212),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 44/60 (74%), Gaps = 0/60 (0%)

Query  12  TEHRILRRAEVEAKTGFKRAHIYSLMKEGKFPKALRLGVRAVGWDSVEIEQWIAERLKER  71
           T  ++LR  +VE KTG+KR++IY  MKEG FP+++++G  +V+W   EI++WI  +L +R
Sbjct  2   TSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

28) alpa in NC_015740


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 61.0 bits (212),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 44/60 (74%), Gaps = 0/60 (0%)

Query  12  TEHRILRRAEVEAKTGFKRAHIYSLMKEGKFPKALRLGVRAVGWDSVEIEQWIAERLKER  71
           T  ++LR  +VE KTG+KR++IY  MKEG FP+++++G  +V+W   EI++WI  +L +R
Sbjct  2   TSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

29) Marme_2105 in NC_015276


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 60.8 bits (211),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  2   RVMKLNEVINTTGLSRSSIYAYMSKGNFPKPIQLGPRAVAWIEEEVHKWLCDKISQR  58
           ++++L +V + TGL RS IY YM  G FP++I++GP +VAW+E E++ W+  K+S+R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

30) Rpic12D_0635 in NC_012856


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 60.8 bits (211),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 26/60 (44%), Positives = 45/60 (75%), Gaps = 0/60 (0%)

Query  12  TEHRILRRAEVEAKTGFKRAHIYSLMKEGKFPKALRLGVRAVGWDSMEVEQWIADRLNER  71
           T  ++LR  +VE KTG+KR++IY  MKEG FP+++++G  +V+W   E+++WI  +L++R
Sbjct  2   TSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

31) Fraau_3057 in NC_017033


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 60.8 bits (211),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 25/56 (45%), Positives = 42/56 (75%), Gaps = 0/56 (0%)

Query  14  RLIRIAEVERTTGLKRPTIYRHMAAGTFPASIKLSPSCTAWSEAEVQAWIAQRIAA  69
           +L+R+ +VE+ TGLKR+ IY  M  G+FP SIK++P+  AW E+E++ WI ++++ 
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

32) Tgr7_2812 in NC_011901


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 60.5 bits (210),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 27/57 (48%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  15  RILRRAEVEAKTGFKRAHIYSLMKEGRFPKALRLGVRAVGWDSTEIDQWIADRLKER  71
           ++LR  +VE KTG+KR++IY  MKEG FP+++++G  +V+W  +EID+WI  +L +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

33) SEEH1578_21295 in NC_021810


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 60.5 bits (210),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 29/59 (50%), Positives = 46/59 (78%), Gaps = 0/59 (0%)

Query  13  SYRLLRISEVINLTGLPKSTIYLKIKNDEFPNQVSIGSRSVAWVEHEVNEWIEKNILNR  71
           SY+LLR+ +V + TGL +S IYL +K++ FP  + IG+ SVAW+E E++EWI+K++ +R
Sbjct  3   SYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

34) SU5_02999 in NC_017623


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 60.5 bits (210),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 29/59 (50%), Positives = 46/59 (78%), Gaps = 0/59 (0%)

Query  13  SYRLLRISEVINLTGLPKSTIYLKIKNDEFPNQVSIGSRSVAWVEHEVNEWIEKNILNR  71
           SY+LLR+ +V + TGL +S IYL +K++ FP  + IG+ SVAW+E E++EWI+K++ +R
Sbjct  3   SYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

35) CFSAN002069_19815 in NC_021812


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 60.5 bits (210),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 29/59 (50%), Positives = 46/59 (78%), Gaps = 0/59 (0%)

Query  13  SYRLLRISEVINLTGLPKSTIYLKIKNDEFPNQVSIGSRSVAWVEHEVNEWIEKNILNR  71
           SY+LLR+ +V + TGL +S IYL +K++ FP  + IG+ SVAW+E E++EWI+K++ +R
Sbjct  3   SYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

36) Bpet1289 in NC_010170


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 60.3 bits (209),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 27/57 (48%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  13  RILRRAEVEAKTGFKRAHIYSLMKEGKFPKAMRLGVRAVGWDSAEIDQWITDRLKER  69
           ++LR  +VE KTG+KR++IY  MKEG FP+++++G  +V+W  +EID+WI  +L +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

37) A1122_19325 in NC_017168


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 60.3 bits (209),  Expect = 7e-11, Method: Compositional matrix adjust.
 Identities = 29/61 (48%), Positives = 45/61 (74%), Gaps = 0/61 (0%)

Query  1   MSDINLIRLPEVIEKIRLKKSSIYHLISLNQFPRPIKLGPRSVAWVESEVDEWVIIRINQ  60
           M+  +L+RL +V +K  LK+S IY  +    FPR+IK+GP SVAW+ESE+DEW+  ++++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

38) YpAngola_A1363 in NC_010159


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 60.3 bits (209),  Expect = 7e-11, Method: Compositional matrix adjust.
 Identities = 29/61 (48%), Positives = 45/61 (74%), Gaps = 0/61 (0%)

Query  1   MSDINLIRLPEVIEKIRLKKSSIYHLISLNQFPRPIKLGPRSVAWVESEVDEWVIIRINQ  60
           M+  +L+RL +V +K  LK+S IY  +    FPR+IK+GP SVAW+ESE+DEW+  ++++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

39) YPA_0571 in NC_008150


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 60.3 bits (209),  Expect = 7e-11, Method: Compositional matrix adjust.
 Identities = 29/61 (48%), Positives = 45/61 (74%), Gaps = 0/61 (0%)

Query  1   MSDINLIRLPEVIEKIRLKKSSIYHLISLNQFPRPIKLGPRSVAWVESEVDEWVIIRINQ  60
           M+  +L+RL +V +K  LK+S IY  +    FPR+IK+GP SVAW+ESE+DEW+  ++++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

40) YPC_1143 in NC_017265


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 60.3 bits (209),  Expect = 7e-11, Method: Compositional matrix adjust.
 Identities = 29/61 (48%), Positives = 45/61 (74%), Gaps = 0/61 (0%)

Query  1   MSDINLIRLPEVIEKIRLKKSSIYHLISLNQFPRPIKLGPRSVAWVESEVDEWVIIRINQ  60
           M+  +L+RL +V +K  LK+S IY  +    FPR+IK+GP SVAW+ESE+DEW+  ++++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

41) alpA1 in NC_005810


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 60.3 bits (209),  Expect = 7e-11, Method: Compositional matrix adjust.
 Identities = 29/61 (48%), Positives = 45/61 (74%), Gaps = 0/61 (0%)

Query  1   MSDINLIRLPEVIEKIRLKKSSIYHLISLNQFPRPIKLGPRSVAWVESEVDEWVIIRINQ  60
           M+  +L+RL +V +K  LK+S IY  +    FPR+IK+GP SVAW+ESE+DEW+  ++++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

42) YPN_2905 in NC_008149


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 60.3 bits (209),  Expect = 7e-11, Method: Compositional matrix adjust.
 Identities = 29/61 (48%), Positives = 45/61 (74%), Gaps = 0/61 (0%)

Query  1   MSDINLIRLPEVIEKIRLKKSSIYHLISLNQFPRPIKLGPRSVAWVESEVDEWVIIRINQ  60
           M+  +L+RL +V +K  LK+S IY  +    FPR+IK+GP SVAW+ESE+DEW+  ++++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

43) YPDSF_2604 in NC_009381


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 60.3 bits (209),  Expect = 7e-11, Method: Compositional matrix adjust.
 Identities = 29/61 (48%), Positives = 45/61 (74%), Gaps = 0/61 (0%)

Query  1   MSDINLIRLPEVIEKIRLKKSSIYHLISLNQFPRPIKLGPRSVAWVESEVDEWVIIRINQ  60
           M+  +L+RL +V +K  LK+S IY  +    FPR+IK+GP SVAW+ESE+DEW+  ++++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  61  R  61
           R
Sbjct  61  R  61

44) Pecwa_1667 in NC_013421


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 60.0 bits (208),  Expect = 7e-11, Method: Compositional matrix adjust.
 Identities = 27/57 (48%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  13  RILRRAEVEAKTGFKRAHIYNLMKEGKFPKALRLGVRAVGWDSAEIDQWITDRLKER  69
           ++LR  +VE KTG+KR++IY  MKEG FP+++++G  +V+W  +EID+WI  +L +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

45) Despr_0272 in NC_014972


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 59.7 bits (207),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 25/55 (46%), Positives = 43/55 (79%), Gaps = 0/55 (0%)

Query  10  LLRRPDVEKRTGLKRAHIYALMKQGEFPQAVPLAGRAVAWISDEIDNWISGRIQQ  64
           LLR  +VE++TGLKR++IY  MK+G FP+++ ++  +VAW+  EID+WI+ ++ +
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

46) alpa in NC_015740


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 59.7 bits (207),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  13  RILRRAEVEAKTGFKRAHIYNLMKDGKFPKALRLGIRAVGWDSAEIDQWITERLQER  69
           ++LR  +VE KTG+KR++IY  MK+G FP+++++G  +V+W  +EID+WI  +L +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

47) A458_06100 in NC_018028


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 59.7 bits (207),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 26/60 (44%), Positives = 43/60 (72%), Gaps = 0/60 (0%)

Query  12  PEHRVLRRAEVEAKTGFKRAHIYSLMKEGKFPKALRLGVRAVGWDSVEIEQWIADRLKER  71
              ++LR  +VE KTG+KR++IY  MKEG FP+++++G  +V+W   EI++WI  +L +R
Sbjct  2   TSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

48) I636_19330 in NC_021714


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 59.7 bits (207),  Expect = 9e-11, Method: Compositional matrix adjust.
 Identities = 28/51 (55%), Positives = 40/51 (79%), Gaps = 0/51 (0%)

Query  1   MRLPEVKAKTGFGRSTIYALMANGEFPRSIRIGARAVGWLESDIDQWIETR  51
           +RL +V  KTG+ RS IY  M +G FPRSI+IG+ +V+WLES+ID+WI+ +
Sbjct  7   LRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKK  57

49) Alide_2723 in NC_014910


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 59.7 bits (207),  Expect = 9e-11, Method: Compositional matrix adjust.
 Identities = 26/60 (44%), Positives = 44/60 (74%), Gaps = 0/60 (0%)

Query  12  PEHRILRRTEVEVKTGFKRAHIYSLMKEGKFPKALRLGVRAVGWDSVEIEQWIADRLNER  71
              ++LR  +VE KTG+KR++IY  MKEG FP+++++G  +V+W   EI++WI  +L++R
Sbjct  2   TSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

50) Alide2_1737 in NC_015422


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 59.7 bits (207),  Expect = 9e-11, Method: Compositional matrix adjust.
 Identities = 26/60 (44%), Positives = 43/60 (72%), Gaps = 0/60 (0%)

Query  12  PEHRILRRAEVEAKTGFKRAHIYSLMKEGKFPKALRLGVRAVGWDSVEIEQWIADRLKER  71
              ++LR  +VE KTG+KR++IY  MKEG FP+++++G  +V+W   EI++WI  +L +R
Sbjct  2   TSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

51) Tmz1t_1000 in NC_011662


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 59.7 bits (207),  Expect = 9e-11, Method: Compositional matrix adjust.
 Identities = 26/60 (44%), Positives = 43/60 (72%), Gaps = 0/60 (0%)

Query  12  PEHRILRRAEVEAKTGFKRAHIYSLMKEGKFPKALRLGVRAVGWDSVEIEQWIADRLKER  71
              ++LR  +VE KTG+KR++IY  MKEG FP+++++G  +V+W   EI++WI  +L +R
Sbjct  2   TSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

52) ECSF_2233 in NC_013654


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 59.5 bits (206),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 28/58 (49%), Positives = 45/58 (78%), Gaps = 0/58 (0%)

Query  14  YRLLRISEVINLTGLPKSTIYLKIKNDEFPNQVSIGSRSVAWVEHEVNEWIEKNILNR  71
           Y+LLR+ +V + TGL +S IYL +K++ FP  + IG+ SVAW+E E++EWI+K++ +R
Sbjct  4   YQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

53) alpA3 in NC_010170


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 59.5 bits (206),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYNLMRAGKFPQALRLGVRAVGWDSVEIDQWIAERLNNR  69
           ++LRL +VE K+G+KR++IY  M+ G FP+++++G  +V+W   EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

54) Bxe_A1231 in NC_007951


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 59.5 bits (206),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYNLMRAGKFPQALRLGVRAVGWDSVEIDQWIAERLNNR  69
           ++LRL +VE K+G+KR++IY  M+ G FP+++++G  +V+W   EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

55) Dd1591_0481 in NC_012912


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 59.2 bits (205),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 27/57 (48%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRRAEVEAKTGFKRAHIYNLMKEGKFPKALHLGVRAVGWDSAEIDQWITDRLKER  69
           ++LR  +VE KTG+KR++IY  MKEG FP+++ +G  +V+W  +EID+WI  +L +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

56) M636_02800 in NC_021822


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 58.9 bits (204),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 28/57 (50%), Positives = 46/57 (81%), Gaps = 0/57 (0%)

Query  2   RFLKLKEVIEKTALSRSAIYRKMSEDAFPKSVNLGDRAVAWVESEVDDWMAKVLVNR  58
           ++L+L++V +KT+L RS IY  M E+AFP+S+++G  +VAW+ESE+D+W+ K L +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

57) Neut_0125 in NC_008344


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 58.9 bits (204),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  13  RILRREEVEAKTGFKRAHIYNLMKKGQFPKALRLGVRAVGWDSTEIDQWITERLNNR  69
           ++LR  +VE KTG+KR++IY  MK G FP+++++G  +V+W  +EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

58) Sbal223_0381 in NC_011663


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 58.9 bits (204),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  2   KLIKLKDVIASTGLGRSTIYKYIENGIFPKAVSLGCRSVAWVESEIQDWILARIEER  58
           +L++L++V   TGL RS IY Y+ +G FP+++ +G  SVAW+ESEI++WI  ++ +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

59) YE105_C2856 in NC_015224


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 58.7 bits (203),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 32/57 (57%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  4   RLIRLPDVMSITGLKRSTIYFKMKEGNFPNNIPIGERSVAWVEGEVINWINGNISKR  60
           +L+RL +V   TGLKRS IY+ MKEG FP +I IG  SVAW+E+E+ +WIN ++S R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

60) Bxe_C0412 in NC_007953


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 58.7 bits (203),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 26/53 (50%), Positives = 37/53 (70%), Gaps = 0/53 (0%)

Query  14  RLIRLREVRTRVGLGASTVYRYLAAGKFPRPVEIGGGRVAWVESEIDAWIASR  66
           +L+RLR+V  + GL  S +Y Y+  G FPR++ IG + VAW+ESEID WI  +
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKK  57

61) Dda3937_01305 in NC_014500


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 58.7 bits (203),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 29/61 (48%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  2   MSNLTLLRLPDVMKKTSLKKSWIYYLIDRGEFPQPVKLGARSVAWVESEINDWIAERIRQ  61
           M++  LLRL +V +KT+LK+S IY  +  G FP+++K+G+ SVAW+ESEI++WI  ++ +
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  62  R  62
           R
Sbjct  61  R  61

62) Dd586_3773 in NC_013592


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 58.7 bits (203),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 29/61 (48%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  2   MSNLTLLRLPDVMKKTSLKKSWIYYLIDRGEFPQPVKLGARSVAWVESEINDWIAERIRQ  61
           M++  LLRL +V +KT+LK+S IY  +  G FP+++K+G+ SVAW+ESEI++WI  ++ +
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  62  R  62
           R
Sbjct  61  R  61

63) Dd703_3550 in NC_012880


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 58.7 bits (203),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 29/61 (48%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  2   MSNLTLLRLPDVMKKTSLKKSWIYYLIDRGEFPQPVKLGARSVAWVESEINDWIAERIRQ  61
           M++  LLRL +V +KT+LK+S IY  +  G FP+++K+G+ SVAW+ESEI++WI  ++ +
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  62  R  62
           R
Sbjct  61  R  61

64) Dd1591_3697 in NC_012912


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 58.7 bits (203),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 29/61 (48%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  2   MSNLTLLRLPDVMKKTSLKKSWIYYLIDRGEFPQPVKLGARSVAWVESEINDWIAERIRQ  61
           M++  LLRL +V +KT+LK+S IY  +  G FP+++K+G+ SVAW+ESEI++WI  ++ +
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  62  R  62
           R
Sbjct  61  R  61

65) Dd1591_3709 in NC_012912


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 58.7 bits (203),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 29/61 (48%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  2   MSNLTLLRLPDVMKKTSLKKSWIYYLIDRGEFPQPVKLGARSVAWVESEINDWIAERIRQ  61
           M++  LLRL +V +KT+LK+S IY  +  G FP+++K+G+ SVAW+ESEI++WI  ++ +
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

Query  62  R  62
           R
Sbjct  61  R  61

66) Spea_1260 in NC_009901


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 58.7 bits (203),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 27/57 (48%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  2   KLIRLKDVIACTGLARSTIYKYIEEGIFPKSVSLGDRAVAWVENEVQEWILERIEER  58
           +L+RL++V   TGL RS IY Y+ EG FP+S+ +G  +VAW+E+E++EWI  ++ +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

67) Tola_2395 in NC_012691


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 58.7 bits (203),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 27/57 (48%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYSLMKKGEFPQSLRLGVRAVGWDSTEIDLWITERLKNR  69
           ++LRL +VE K+G+KR++IY  MK G FP+S+++G  +V+W  +EID WI  +L +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

68) VV0810 in NC_005139


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 58.7 bits (203),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 45/57 (79%), Gaps = 0/57 (0%)

Query  2   RFLKLKEVMEKTALSRSAIYRKMSDGEFPQSVSLGDRAVAWVESEVQDWVIDKVAER  58
           ++L+L++V +KT+L RS IY  M +G FP+S+ +G  +VAW+ESE+++W+  K+++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

69) B479_23190 in NC_019905


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 58.4 bits (202),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 42/57 (74%), Gaps = 0/57 (0%)

Query  10  RVIRLKTVVEITGLARSTVYSYIAKGIFPKSISLGGRCVGWVESEVHTWIQARVTER  66
           +++RL+ V + TGL RS +Y Y+  G FP+SI +G   V+W+ESE++ WI+ ++++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

70) ebD61 in NC_006513


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 58.2 bits (201),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYSLMKKGEFPQALRLGVRAVGWDSTEVDLWISERLKNR  69
           ++LRL +VE K+G+KR++IY  MK G FP+++++G  +V+W  +E+D WI+ +L +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

71) Shewmr4_2784 in NC_008321


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 58.2 bits (201),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 42/58 (73%), Gaps = 0/58 (0%)

Query  2   SNKIMRLPEVKSRTGLSRSSIYLRISKGEFPASISLGDRAVGWLEADIEQWLDERIAA  59
           S +++RL +V  +TGL RS IYL +  G FP SI +G  +V+WLE++I++W++ +++ 
Sbjct  3   SYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

72) PSEBR_a730 in NC_015379


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 58.2 bits (201),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 23/57 (41%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  2   RIIRLQDVKHSTGLGRSTIYKYISEGSFPKPVPLGDRAVGWVESEVMGWVMARIEER  58
           +++RL++V + TGL RS IY Y+ EG+FP+++ +G  +V+W+ESE+  W+  ++ +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

73) Pmen_1159 in NC_009439


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 57.9 bits (200),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  2   RIIRLKEVTHLTGLARSTVYKYLAEGKFPKSVSLGHRSIGFLESEIQEWIMARIKER  58
           +++RL++V + TGL RS +Y Y+ EG FP+S+ +G  S++ LESEI+EWI  ++ +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

74) VV2250 in NC_005139


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 57.9 bits (200),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  17  RFLKLKEVMEKTALSRSAIYRKMNDGEFPESVSLGERAIAWVESEVDEWMEMRLERR  73
           ++L+L++V +KT+L RS IY  M++G FP S+ +G  ++AW+ESE+DEW++ +L  R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

75) Bpet2882 in NC_010170


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 57.6 bits (199),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 42/57 (74%), Gaps = 0/57 (0%)

Query  6   QILRITDVTRITGLSRPAIYYNVKRGLFPRQIQLGPRSVGWLASDVEAWFQSRISAR  62
           Q+LR+ +V + TGL R+ IY  +K G FPR I++GP SV+WL S+++ W++ ++S R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

76) VS_1654 in NC_011753


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 57.6 bits (199),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  12  RFLKLKEVIEKTALSRSAIYRKMDEGNFPVSVSLGDRAVAWVEEEVNNWMEMRLAER  68
           ++L+L++V +KT+L RS IY  M EG FP S+ +G  +VAW+E E+++W++ +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

77) YSA_00735 in NC_017986


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 57.4 bits (198),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 26/55 (48%), Positives = 41/55 (75%), Gaps = 0/55 (0%)

Query  14  HIMRRDEVEQKTGFKRSHIYNLMKAGEFPQCRRIGTRAVGWDSLEIEQWVQDRLS  68
           +++R  +VEQKTG+KRS+IY  MK G FP+  +IG  +V+W   EI++W++ +LS
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLS  59

78) Sputcn32_3522 in NC_009438


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 57.4 bits (198),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  2   KLIRLTKVMDYTGLARSTIYKYIAEGTFPKPVSLGSRAAAWVESEVQEWILTRIEER  58
           +L+RL +V + TGL RS IY Y+ EG+FP+++ +G+ + AW+ESE++EWI  ++ +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

79) AXYL_01049 in NC_014640


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 57.4 bits (198),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 26/63 (42%), Positives = 46/63 (74%), Gaps = 2/63 (3%)

Query  7   LPPYERRILRLDEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSVEIDQWIAERL  66
           + +Y+  +LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  +L
Sbjct  1   MTSYQ--LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKL  58

Query  67  NNR  69
           ++R
Sbjct  59  SDR  61

80) T1E_4236 in NC_018220


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 57.1 bits (197),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 26/55 (48%), Positives = 41/55 (75%), Gaps = 0/55 (0%)

Query  14  HIMRRDEVEQKTGFKRSHIYNLMKAGQFPQCRRIGTRAVGWDSLEIEQWVQDRLS  68
           +++R  +VEQKTG+KRS+IY  MK G FP+  +IG  +V+W   EI++W++ +LS
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLS  59

81) Pput_2913 in NC_009512


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 57.1 bits (197),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 26/55 (48%), Positives = 41/55 (75%), Gaps = 0/55 (0%)

Query  14  HIMRRDEVEQKTGFKRSHIYNLMKAGQFPQCRRIGTRAVGWDSLEIEQWVQDRLS  68
           +++R  +VEQKTG+KRS+IY  MK G FP+  +IG  +V+W   EI++W++ +LS
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLS  59

82) PputW619_3285 in NC_010501


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 57.1 bits (197),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 26/55 (48%), Positives = 41/55 (75%), Gaps = 0/55 (0%)

Query  14  HIMRRDEVEQKTGFKRSHIYNLMKAGQFPQCRRIGTRAVGWDSLEIEQWVQDRLS  68
           +++R  +VEQKTG+KRS+IY  MK G FP+  +IG  +V+W   EI++W++ +LS
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLS  59

83) XC_2072 in NC_007086


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 57.1 bits (197),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  16  RILRLDEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSVEIDQWIAERLNNR  72
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

84) xccb100_2403 in NC_010688


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 57.1 bits (197),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  16  RILRLDEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSVEIDQWIAERLNNR  72
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

85) FTN_0015 in NC_008601


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 57.1 bits (197),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 23/57 (41%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  2   KILRLKQVVEMTGTSKTTIYRWINANQFPKPINLSHASVGWLEADINDWIQSKIQAR  58
           ++LRL+QV + TG  ++ IY  ++   FP++I+++ ASV+WLE++I++WI+ K+  R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

86) Fphi_1927 in NC_010336


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 57.1 bits (197),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 23/57 (41%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  2   KILRLKQVVEMTGTSKTTIYRWINANQFPKPINLSHASVGWLEADINDWIQSKIQAR  58
           ++LRL+QV + TG  ++ IY  ++   FP++I+++ ASV+WLE++I++WI+ K+  R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

87) L483_12005 in NC_021491


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.8 bits (196),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 26/55 (48%), Positives = 41/55 (75%), Gaps = 0/55 (0%)

Query  14  HIMRRDEVEQKTGFKRSHIYNLMKAGHFPQCRRIGTRAVGWDSLEIEQWVQDRLS  68
           +++R  +VEQKTG+KRS+IY  MK G FP+  +IG  +V+W   EI++W++ +LS
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLS  59

88) BTI_2164 in NC_021173


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.8 bits (196),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 26/56 (47%), Positives = 43/56 (77%), Gaps = 0/56 (0%)

Query  19  ILRRKDVERRTGFKRSHIYNLMHQGKFPRAIPLGARAVGWDSREIDQWIEERKQQR  74
           +LR ++VE++TG+KRS+IY  M +G FPR+I +G+ +V+W   EID+WI+ +  +R
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

89) NH44784_010881 in NC_021285


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.8 bits (196),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSVEIDQWIAERLNNR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

90) HEAR1968 in NC_009138


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.8 bits (196),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSVEIDQWIAERLNNR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

91) Plav_3376 in NC_009719


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.8 bits (196),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSVEIDQWIAERLNNR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

92) XCAW_01643 in NC_020815


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.8 bits (196),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSVEIDQWIAERLNNR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

93) NAL212_2044 in NC_015222


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.6 bits (195),  Expect = 8e-10, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 42/57 (74%), Gaps = 0/57 (0%)

Query  2   KFVKLETVKSMTGLSRSSIYQYINEGRFPNQVRLGSRSVAWVASEVDEWMNSCIANR  58
           ++++L  V   TGL RS IY Y++EG FP  +++G+ SVAW+ SE+DEW+N  +++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

94) FN3523_0015 in NC_017449


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.6 bits (195),  Expect = 9e-10, Method: Compositional matrix adjust.
 Identities = 25/59 (43%), Positives = 43/59 (73%), Gaps = 0/59 (0%)

Query  2   SLKILRLSQVVEMTGTSKSTIYRWINANQFPKPINLSHASVGWLEADINDWIQSKIQAR  60
           S ++LRL QV + TG  +S IY  ++   FP++I+++ ASV+WLE++I++WI+ K+  R
Sbjct  3   SYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

95) Thivi_2364 in NC_018012


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.3 bits (194),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 25/56 (45%), Positives = 41/56 (74%), Gaps = 0/56 (0%)

Query  9   ATARILRLPEVAARIGMSRSSVYLLMNRGQFPKSVKLSLRAVGWRESEIDEWANSR  64
           ++ ++LRL +V  + G+ RS +YL M+ G FP+S+K++  +V+W ESEIDEW N +
Sbjct  2   TSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKK  57

96) NH44784_010091 in NC_021285


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.3 bits (194),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIAERLNHR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

97) Ajs_1320 in NC_008782


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.3 bits (194),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIAERLNHR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

98) alpA1 in NC_010170


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.3 bits (194),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIAERLNHR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

99) alpA in NC_007973


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.3 bits (194),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIAERLNHR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

100) PADK2_12295 in NC_018080


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.3 bits (194),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIAERLNHR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

101) PLES_27091 in NC_011770


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.3 bits (194),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIAERLNHR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

102) SMD_1576 in NC_017671


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.3 bits (194),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIAERLNHR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

103) TMO_c0096 in NC_017958


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.3 bits (194),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIAERLNHR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

104) PCNPT3_08010 in NC_020802


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.3 bits (194),  Expect = 9e-10, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 43/55 (79%), Gaps = 0/55 (0%)

Query  2   KFIRLKDVIAKTGLARATIYKFMANDKFPKTISLGDRAVAWLDSDVDEWMLGRIA  56
           +++RL++V  KTGL R+ IY +M ++ FP++I +G  +VAWL+S++DEW+  +++
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLS  59

105) Hhal_1156 in NC_008789


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.1 bits (193),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 26/53 (50%), Positives = 42/53 (80%), Gaps = 0/53 (0%)

Query  14  RLLRINSVIKRVGLGRSTIYKKVKEGGFPKPIKLGERAIAWRESDIEEWISRR  66
           +LLR+  V ++ GL RS IY  +KEG+FP++IK+G  ++AW ES+I+EWI+++
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKK  57

106) Alide_3995 in NC_014910


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.1 bits (193),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIAERLNHR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  +L++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

107) alpA2 in NC_010170


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.1 bits (193),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  13  RILRLEEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIDERVNNR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI+ ++++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

108) Daci_4141 in NC_010002


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.1 bits (193),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  13  RILRLEEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIDERVNNR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI+ ++++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

109) NCGM2_1450 in NC_017549


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.1 bits (193),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  13  RILRLEEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIDERVNNR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI+ ++++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

110) alpA in NC_017532


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 56.1 bits (193),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  13  RILRLEEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIDERVNNR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI+ ++++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

111) XF1786 in NC_002488


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.8 bits (192),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  16  RILRLEEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIAERVNNR  72
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  ++++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

112) PputGB1_4755 in NC_010322


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.5 bits (191),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 42/57 (74%), Gaps = 0/57 (0%)

Query  2   KVIRLQQVMEMTGLGRSTVYKYVSGNWFPKPIPLGGRSVGWLESEVNEWILDRIEER  58
           +++RL+QV + TGL RS +Y Y+    FP++I +G  SV+WLESE++EWI  ++ +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

113) NH44784_008971 in NC_021285


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.5 bits (191),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRLEEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIAERVNNR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  ++++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

114) Ajs_1454 in NC_008782


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.5 bits (191),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRLDEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIAERVNNR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  ++++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

115) XCV2415 in NC_007508


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.5 bits (191),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  13  RILRLEEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIAERVNNR  69
           ++LRL +VE K+G+KR++IY  MK   FP+++++G  +V+W   EID+WI  ++++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

116) N175_11480 in NC_022223


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.3 bits (190),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 43/58 (75%), Gaps = 1/58 (1%)

Query  2   RFLRLKEVMSLTGLGRSTIYKFMADETDFPKSVPLGGRAVAWVESEIEEWMESRLSMR  59
           ++LRL++V   TGL RS IY +M  E  FP+S+ +G  +VAW+ESEI+EW++ +LS R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYM-KEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

117) VAA_01228 in NC_015633


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.3 bits (190),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 43/58 (75%), Gaps = 1/58 (1%)

Query  2   RFLRLKEVMSLTGLGRSTIYKFMADETDFPKSVPLGGRAVAWVESEIEEWMESRLSMR  59
           ++LRL++V   TGL RS IY +M  E  FP+S+ +G  +VAW+ESEI+EW++ +LS R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYM-KEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

118) O3Y_08640 in NC_016944


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.3 bits (190),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 45/57 (79%), Gaps = 0/57 (0%)

Query  12  RFLKLKEVMEKTALSRSAIYRKMNDGEFPQSVSLGERAIAWVESEVDEWMDFCLKQR  68
           ++L+L++V +KT+L RS IY  M++G FP+S+ +G  ++AW+ESE+DEW++  L +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

119) VCM66_1723 in NC_012578


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.3 bits (190),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 45/57 (79%), Gaps = 0/57 (0%)

Query  12  RFLKLKEVMEKTALSRSAIYRKMNDGEFPQSVSLGERAIAWVESEVDEWMDFCLKQR  68
           ++L+L++V +KT+L RS IY  M++G FP+S+ +G  ++AW+ESE+DEW++  L +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

120) VCD_002586 in NC_012668


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.3 bits (190),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 45/57 (79%), Gaps = 0/57 (0%)

Query  12  RFLKLKEVMEKTALSRSAIYRKMNDGEFPQSVSLGERAIAWVESEVDEWMDFCLKQR  68
           ++L+L++V +KT+L RS IY  M++G FP+S+ +G  ++AW+ESE+DEW++  L +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

121) VC1785 in NC_002505


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.3 bits (190),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 45/57 (79%), Gaps = 0/57 (0%)

Query  12  RFLKLKEVMEKTALSRSAIYRKMNDGEFPQSVSLGERAIAWVESEVDEWMDFCLKQR  68
           ++L+L++V +KT+L RS IY  M++G FP+S+ +G  ++AW+ESE+DEW++  L +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

122) VC395_1899 in NC_012582


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.3 bits (190),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 45/57 (79%), Gaps = 0/57 (0%)

Query  12  RFLKLKEVMEKTALSRSAIYRKMNDGEFPQSVSLGERAIAWVESEVDEWMDFCLKQR  68
           ++L+L++V +KT+L RS IY  M++G FP+S+ +G  ++AW+ESE+DEW++  L +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

123) VC0395_A1382 in NC_009457


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.3 bits (190),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 45/57 (79%), Gaps = 0/57 (0%)

Query  12  RFLKLKEVMEKTALSRSAIYRKMNDGEFPQSVSLGERAIAWVESEVDEWMDFCLKQR  68
           ++L+L++V +KT+L RS IY  M++G FP+S+ +G  ++AW+ESE+DEW++  L +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

124) Dsui_0171 in NC_016616


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.3 bits (190),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 23/53 (44%), Positives = 39/53 (74%), Gaps = 0/53 (0%)

Query  6   RIIRLPDVEKAVGLKKSAIYKLIKAGEFPHQLKLGKHASGWLEADVQAWIRKK  58
           +++RL +VE+  GLK+S IY  +K G FP+ +K+G  + +WLE++++ WI KK
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKK  57

125) VCLMA_A1546 in NC_017270


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.0 bits (189),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 45/57 (79%), Gaps = 0/57 (0%)

Query  2   RFLKLKEVMEKTALSRSAIYRKMNDGEFPQSVSLGERAIAWVESEVDEWMDFCLKQR  58
           ++L+L++V +KT+L RS IY  M++G FP+S+ +G  ++AW+ESE+DEW++  L +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

126) Vch1786_I1278 in NC_016445


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.0 bits (189),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 45/57 (79%), Gaps = 0/57 (0%)

Query  2   RFLKLKEVMEKTALSRSAIYRKMNDGEFPQSVSLGERAIAWVESEVDEWMDFCLKQR  58
           ++L+L++V +KT+L RS IY  M++G FP+S+ +G  ++AW+ESE+DEW++  L +R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

127) O3Y_02325 in NC_016944


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.0 bits (189),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 43/58 (75%), Gaps = 1/58 (1%)

Query  2   RFLRLKDVMSLTGLGRSTIYKFMADETDFPKSVPLGGRAVAWVESEIEEWMESRLSMR  59
           ++LRL++V   TGL RS IY +M  E  FP+S+ +G  +VAW+ESEI+EW++ +LS R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYM-KEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

128) VCD_001110 in NC_012668


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.0 bits (189),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 43/58 (75%), Gaps = 1/58 (1%)

Query  2   RFLRLKDVMSLTGLGRSTIYKFMADETDFPKSVPLGGRAVAWVESEIEEWMESRLSMR  59
           ++LRL++V   TGL RS IY +M  E  FP+S+ +G  +VAW+ESEI+EW++ +LS R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYM-KEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

129) VC0497 in NC_002505


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 55.0 bits (189),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 43/58 (75%), Gaps = 1/58 (1%)

Query  2   RFLRLKDVMSLTGLGRSTIYKFMADETDFPKSVPLGGRAVAWVESEIEEWMESRLSMR  59
           ++LRL++V   TGL RS IY +M  E  FP+S+ +G  +VAW+ESEI+EW++ +LS R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYM-KEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

130) AHML_05600 in NC_021290


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 54.7 bits (188),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 26/53 (50%), Positives = 40/53 (76%), Gaps = 0/53 (0%)

Query  2   KLLKLKDVIAMTSLSKASVYRQMNDGKFPASVKIGPRSVAWVSSEIELWIEEK  54
           +LL+L++V   T+L ++ +Y  M++G FP S+KIGP SVAW+ SEI+ WI+ K
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKK  57

131) Pput_3427 in NC_009512


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 54.7 bits (188),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 25/51 (50%), Positives = 40/51 (79%), Gaps = 0/51 (0%)

Query  9   RLLRLPDVLRITGMGRNTVYTRIKEGTFPKQVKIGPKSVAWRQSDINQWMA  59
           +LLRL +V + TG+ R+ +Y  +KEG+FP+ +KIGP SVAW +S+I++W+ 
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWIN  55

132) Mesci_3844 in NC_014923


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 54.5 bits (187),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 28/60 (47%), Positives = 45/60 (75%), Gaps = 0/60 (0%)

Query  3   TTNTFIRRPDVERLTGLKTSSLYEQMKEGNFPRPIKIGAKAVAWRLADVTEWQERKIAQR  62
           T+  ++R  +VE+ TGLK S +Y  MKEG FPR+IKIG+ +VAW  +++ EW ++K+++R
Sbjct  2   TSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

133) N646_2021 in NC_022349


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 54.5 bits (187),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 45/57 (79%), Gaps = 0/57 (0%)

Query  2   RLIRLKEVLDNTGLSRAYMYKLMAEGKFPKSVSLGFRSVAWVESEVQDWILERVAER  58
           +L+RL++V ++TGL R+ +Y  M EG FP+S+ +G  SVAW+ESE+++WI  ++++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

134) lpa_00278 in NC_014125


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 54.5 bits (187),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 25/59 (43%), Positives = 47/59 (80%), Gaps = 1/59 (1%)

Query  2   AYKILKLPEVKERTAISRSRIYNLISEGLFPKPILLGGARAVGWIESEINEWIEQQIDA  60
           +Y++L+L +V ++T++ RS+IY  + EG FP++I +G A +V+W+ESEI+EWI++++  
Sbjct  3   SYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPA-SVAWLESEIDEWINKKLSD  60

135) LPC_0208 in NC_009494


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 54.5 bits (187),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 25/59 (43%), Positives = 47/59 (80%), Gaps = 1/59 (1%)

Query  2   AYKILKLPEVKERTAISRSRIYNLISEGLFPKPILLGGARAVGWIESEINEWIEQQIDA  60
           +Y++L+L +V ++T++ RS+IY  + EG FP++I +G A +V+W+ESEI+EWI++++  
Sbjct  3   SYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPA-SVAWLESEIDEWINKKLSD  60

136) Fphi_1931 in NC_010336


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 54.5 bits (187),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 27/57 (48%), Positives = 39/57 (69%), Gaps = 0/57 (0%)

Query  3   KIIRLKTVIEMTGLSRSTIYDYMARGLFPRQITLGENSRGWLYSEVDEWLETRIQKR  59
           +++RL+ V + TGL RS IY YM  G FPR I +G  S +WL SE+DEW++ ++  R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

137) L483_22060 in NC_021491


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 54.5 bits (187),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 41/57 (72%), Gaps = 0/57 (0%)

Query  14  HIMRRDEVELKTGFKRSHIYNLMKAGLFPQCRRIGTRAVGWDSLEIEQWVHDRLSVR  70
           +++R  +VE KTG+KRS+IY  MK G FP+  +IG  +V+W   EI++W++ +LS R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

138) NH8B_1936 in NC_016002


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 54.2 bits (186),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 41/56 (74%), Gaps = 1/56 (1%)

Query  2   QLLTLKEVESKLGLKKTKIYLMIDKNEFPPPIKIGAAS-RWAENIVDEWIANRLKQ  56
           QLL L++VE K GLK+++IYL +    FP +IKIG+AS  W E+ +DEWI ++L +
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

139) vfu_A00206 in NC_016602


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 54.2 bits (186),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 28/58 (49%), Positives = 44/58 (76%), Gaps = 1/58 (1%)

Query  4   KFLRLKDVMSLTGLGRSTIYKFMADETDFPKSVPLGGRAVAWVESEIEEWMEQRLALR  61
           ++LRL++V   TGL RS IY +M  E  FP+S+ +G  +VAW+ESEI+EW++++L+ R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYM-KEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

140) VPBB_0171 in NC_019955


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 54.2 bits (186),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 28/58 (49%), Positives = 44/58 (76%), Gaps = 1/58 (1%)

Query  2   RFLRLKDVMSLTGLGRSTIYKFMADETDFPKSVPLGGRAVAWVESEIEEWMEQRLALR  59
           ++LRL++V   TGL RS IY +M  E  FP+S+ +G  +VAW+ESEI+EW++++L+ R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYM-KEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

141) VV0515 in NC_005139


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 54.2 bits (186),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 28/58 (49%), Positives = 44/58 (76%), Gaps = 1/58 (1%)

Query  4   KFLRLKDVMSLTGLGRSTIYKFMADETDFPKSVPLGGRAVAWVESEIEEWMEQRLALR  61
           ++LRL++V   TGL RS IY +M  E  FP+S+ +G  +VAW+ESEI+EW++++L+ R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYM-KEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

142) PFLU1981 in NC_012660


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 54.2 bits (186),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  19  HIMRREEVERKTGFKRAHIYNLMKEGKFPQAKRIGLRAVGWDSLEIEQWVVERLGQQ  75
           +++R  +VE+KTG+KR++IY  MKEG FP++ +IG  +V+W   EI++W+  +L+++
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

143) Shewmr4_1700 in NC_008321


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 54.0 bits (185),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 38/50 (76%), Gaps = 0/50 (0%)

Query  6   KLIRIKDVIDTTGLARSTIYKYVDKGIFPKAVTLGLRAVAWVESEIQGWI  55
           +L+R+++V + TGL RS IY Y+  G FP+++ +G  +VAW+ESEI+ WI
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWI  54

144) M636_22650 in NC_021848


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 54.0 bits (185),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 45/57 (79%), Gaps = 0/57 (0%)

Query  2   RLIRLQEVLDNTGLSRAYMYKLMAEGKFPKSVSLGFRSVAWVESEVQDWILERVAER  58
           +L+RL++V ++TGL R+ +Y  M EG FP+S+ +G  SVAW+ESE+++WI  ++++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

145) Bphy_3413 in NC_010623


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 53.7 bits (184),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 0/50 (0%)

Query  6   RLLRMPEVVRRTGMSSTTVYRRISDGTFPRPVSLGCNRVAWLESEIDAWI  55
           +LLR+ +V ++TG+  + +Y  + +G+FPR++ +G   VAWLESEID WI
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWI  54

146) VEA_004310 in NC_013456


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 53.7 bits (184),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 24/53 (46%), Positives = 38/53 (72%), Gaps = 0/53 (0%)

Query  2   SHKIIRLPEVIDMTGLSRSTIYLRMSQGSFPLSISLGERAVGWLKVDIEKWLD  54
           S +++RL +V + TGL RS IYL M +G+FP SI +G  +V+WL  +I+ W++
Sbjct  3   SYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWIN  55

147) Tbd_2677 in NC_007404


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 53.7 bits (184),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 45/58 (78%), Gaps = 1/58 (1%)

Query  7   TALTILRRRQVEKRVGLTRSPLYARIQAGTFPKPIRLGNGRAVGWIEAEIDAWLDEQI  64
           T+  +LR RQVE++ GL RS +Y  ++ G+FP++I++G + +V+W+E+EID W++ ++
Sbjct  2   TSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPA-SVAWLESEIDEWINKKL  58

148) PSF113_3346 in NC_016830


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 53.4 bits (183),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 25/54 (47%), Positives = 40/54 (75%), Gaps = 0/54 (0%)

Query  1   MRREEVEQKTGFKRAHIYSLMKEGKFPQAKRIGLRAVGWDSMEIERWVTDRLAQ  54
           +R  +VEQKTG+KR++IY  MKEG FP++ +IG  +V+W   EI+ W+  +L++
Sbjct  7   LRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

149) F382_00585 in NC_021743


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 53.4 bits (183),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 25/56 (45%), Positives = 40/56 (72%), Gaps = 0/56 (0%)

Query  10  FMKIDEVSAVTTLSETQIYRKMKAGDFPQSISIGANSKVWLESEIQQWIQRKIEQH  65
           ++++ +V   T L  +QIY  MK G FP+SI IG+ S  WLESEI++WI++K+ ++
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

150) J451_00555 in NC_021739


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 53.4 bits (183),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 25/56 (45%), Positives = 40/56 (72%), Gaps = 0/56 (0%)

Query  10  FMKIDEVSAVTTLSETQIYRKMKAGDFPQSISIGANSKVWLESEIQQWIQRKIEQH  65
           ++++ +V   T L  +QIY  MK G FP+SI IG+ S  WLESEI++WI++K+ ++
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

151) MHH_c21210 in NC_021082


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 53.4 bits (183),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 25/56 (45%), Positives = 40/56 (72%), Gaps = 0/56 (0%)

Query  10  FMKIDEVSAVTTLSETQIYRKMKAGDFPQSISIGANSKVWLESEIQQWIQRKIEQH  65
           ++++ +V   T L  +QIY  MK G FP+SI IG+ S  WLESEI++WI++K+ ++
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

152) D650_15180 in NC_020833


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 53.4 bits (183),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 25/56 (45%), Positives = 40/56 (72%), Gaps = 0/56 (0%)

Query  10  FMKIDEVSAVTTLSETQIYRKMKAGDFPQSISIGANSKVWLESEIQQWIQRKIEQH  65
           ++++ +V   T L  +QIY  MK G FP+SI IG+ S  WLESEI++WI++K+ ++
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

153) N220_07615 in NC_021883


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 53.4 bits (183),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 25/56 (45%), Positives = 40/56 (72%), Gaps = 0/56 (0%)

Query  10  FMKIDEVSAVTTLSETQIYRKMKAGDFPQSISIGANSKVWLESEIQQWIQRKIEQH  65
           ++++ +V   T L  +QIY  MK G FP+SI IG+ S  WLESEI++WI++K+ ++
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

154) Ping_0243 in NC_008709


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 53.2 bits (182),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  2   KILRLADVVKKTGLSRAMLYKLMKDGRFPLNLHISMRSVGWVDSEVEIWMENRLEMR  58
           ++LRL +V +KTGL R+ +Y  MK+G FP ++ I+  SV+W++SE++ W++++L  R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

155) alpA in NC_013892


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 53.2 bits (182),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 24/56 (43%), Positives = 44/56 (79%), Gaps = 0/56 (0%)

Query  9   NLIRLPEVQRRTGYSKAWIYKLISDGEFPKQVKIGPRSIAFIESEIDNWIAQRIAE  64
           +L+RL +V+++TG  ++ IY  + +G FP+ +KIGP S+A +ESEID+WI +++++
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

156) CV_0648 in NC_005085


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 52.9 bits (181),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 38/57 (67%), Gaps = 0/57 (0%)

Query  14  RFLRLPEVISTCGLSRSSVYDAIKRGSFPAPVPLGGKSVAWLSSEIDVWMAGRIAAR  70
           ++LRL +V    GL RS +Y  +K G+FP ++ +G  SVAWL SEID W+  +++ R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

157) SPO3898 in NC_003911


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 52.9 bits (181),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 24/55 (44%), Positives = 36/55 (66%), Gaps = 0/55 (0%)

Query  6   LRRHAVEAVTGLSRSSIYAMMDAGDFPRPVRIGKRAVAWPQSAIEAWLANRPTSK  60
           LR + VE  TGL RS IY  M  G FPR+++IG  +VAW +S I+ W+ ++ + +
Sbjct  7   LRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

158) CGSHiGG_04055 in NC_009567


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 52.9 bits (181),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 41/57 (72%), Gaps = 0/57 (0%)

Query  10  RFIKLPEVMNKTGLGRSSIYRKMNTGDFPRSIQLNKNNIVWLESEVNAWMQAQIEKR  66
           ++++L +V +KTGL RS IY  M+ G FPRSI++   ++ WLESE++ W++ ++  R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

159) Nit79A3_1498 in NC_015731


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 52.9 bits (181),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 42/57 (74%), Gaps = 0/57 (0%)

Query  2   KFVKLETVKSMTGLSRSSIYQLINEGRFPNQVNLGSRSVAWVASEIEDWMNNCIANR  58
           ++++L  V   TGL RS IY  ++EG FP  +++G+ SVAW+ SEI++W+N+ +++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

160) Sbal223_0384 in NC_011663


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 52.9 bits (181),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 23/57 (41%), Positives = 42/57 (74%), Gaps = 0/57 (0%)

Query  2   KLIRQKEVMDCTGLGRSTIYNYIADKTFPKPVSLGLRAVAWVESEVQDWILERIEAR  58
           +L+R ++V + TGL RS IY Y+ + +FP+++ +G  +VAW+ESE+++WI  ++  R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

161) Maqu_0653 in NC_008740


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 52.6 bits (180),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 25/56 (45%), Positives = 39/56 (70%), Gaps = 0/56 (0%)

Query  17  RMLRRKEVEAITGRSRSAIYEGMAAGTFPKPVKIGARAVAWPESAIRNWIAERMEG  72
           ++LR ++VE  TG  RS IY  M  G+FP+++KIG+ +VAW ES I +WI  ++ +
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

162) Aave_0567 in NC_008752


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 52.1 bits (178),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 26/56 (47%), Positives = 42/56 (75%), Gaps = 0/56 (0%)

Query  17  TSRRVLRRPLVEQRTGFKRAHIYSLMKEKKFPQRVRLGVRAVGWYEDEIDQWLAQR  72
           TS ++LR   VEQ+TG+KR++IY  MKE  FP+ +++G  +V+W E EID+W+ ++
Sbjct  2   TSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKK  57

163) alpA in NC_013892


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 52.1 bits (178),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 25/55 (46%), Positives = 44/55 (80%), Gaps = 0/55 (0%)

Query  11  LIRLPEVQRRTGYSKAWIYRLIKEDKFPKQVKIGPRSVAFVESEIDGWVDQRIAE  65
           L+RL +V+++TG  ++ IY  +KE+ FP+ +KIGP SVA +ESEID W+++++++
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

164) ETAC_13010 in NC_020796


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 26/55 (48%), Positives = 45/55 (82%), Gaps = 0/55 (0%)

Query  5   LIRLSEVQRRTGYSKAWIYRLLKENRFPQSIKIGSRSIAFVESEVDDWINQRIAE  59
           L+RL +V+++TG  ++ IY  +KE  FP+SIKIG+ S+A +ESE+D+WIN+++++
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

165) NT08PM_0296 in NC_017764


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 51.6 bits (176),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 24/56 (43%), Positives = 41/56 (74%), Gaps = 0/56 (0%)

Query  9   RFINLDEVINRTSLKKTAIYSLIQKGLFPRPINLGINRTAWLESEIDHWIASKIQQ  64
           +++ L +V ++T+LK++ IY  ++ G FPR+I++G    AWLESEID+WI  K+ +
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

166) XNC1_4250 in NC_014228


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 51.6 bits (176),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 44/55 (80%), Gaps = 0/55 (0%)

Query  11  LIRLPEVQRRTGYSKAWIYKLIGDGEFPKQVKIGARSIAFIESEVDDWISQRISE  65
           L+RL +V+++TG  ++ IY  + +G FP+ +KIG+ S+A +ESE+D+WI++++S+
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

167) YE105_C1330 in NC_015224


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 51.6 bits (176),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 25/60 (42%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query  1   MITCELLTIARVERAVGYDRTTIYLRIKEGTFPKPIKDGRNS-RWTSTDIQEWIDKLIAE  59
           M + +LL + +VE+  G  R+ IYL +KEG+FP++IK G  S  W  ++I+EWI+K +++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

168) UWK_00658 in NC_020304


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 51.3 bits (175),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 27/51 (53%), Positives = 38/51 (75%), Gaps = 0/51 (0%)

Query  12  RLLRRPEVEAVTGLKRSTIYARIKMGTFPAPVQLGPKSVAWKSSDIQSWIE  62
           +LLR  +VE  TGLKRS IY  +K G+FP ++++GP SVAW  S+I+ WI+
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWIN  55

169) A79E_4453 in NC_018522


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 51.3 bits (175),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 28/58 (49%), Positives = 43/58 (75%), Gaps = 0/58 (0%)

Query  1   MNSDRFLRLRQVEDKIGFGKSWIYRQIQLQQFPPSIRLNSRHVAWLESEVDAWIHQRI  58
           M S ++LRLRQVE+K G+ +S IY  ++   FP SI++ +  VAWLESE+D WI++++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKL  58

170) A464_4539 in NC_021870


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 51.3 bits (175),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 28/58 (49%), Positives = 43/58 (75%), Gaps = 0/58 (0%)

Query  1   MNSDRFLRLRQVEDKIGFGKSWIYRQIQLQQFPPSIRLNSRHVAWLESEVDAWIHQRI  58
           M S ++LRLRQVE+K G+ +S IY  ++   FP SI++ +  VAWLESE+D WI++++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKL  58

171) EC55989_0270 in NC_011748


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 51.3 bits (175),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 26/55 (48%), Positives = 44/55 (80%), Gaps = 0/55 (0%)

Query  5   LIRLTEVQRRTGYSKAWIYRLMGQGKFPASVKIGSRAIAFVESEIDEWINQRIAE  59
           L+RL +V+++TG  ++ IY  M +G FP S+KIG+ ++A +ESEIDEWIN+++++
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

172) t2651 in NC_004631


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 51.3 bits (175),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 23/57 (41%), Positives = 38/57 (67%), Gaps = 0/57 (0%)

Query  10  RFLRLPEVMHLCGLSRSTIYELIRKGEFPPQVSLGGKNVAWLHSEITAWMAGRIAGR  66
           ++LRL +V +  GL RS IY  ++ G FP  + +G  +VAWL+SEI  W+  ++++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

173) HS_1424 in NC_008309


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 51.1 bits (174),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 28/57 (50%), Positives = 43/57 (76%), Gaps = 0/57 (0%)

Query  3   RILRIKDVCQKTGLPRSTIYARIKQGTFPAQLKLGARSSGWKESELDLWIEQIQSAR  59
           ++LR+++V QKTGL RS IY  +K+G+FP  +K+G+ S +W ESE+D WI++  S R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

174) KPN_04704 in NC_009648


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 51.1 bits (174),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 28/58 (49%), Positives = 43/58 (75%), Gaps = 0/58 (0%)

Query  3   MNSDRFLRLRQVEDKIGFGKSWIYRQIQLQQFPPSIRLNSRHVAWLESEVDAWIHQRI  60
           M S ++LRLRQVE+K G+ +S IY  ++   FP SI++ +  VAWLESE+D WI++++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKL  58

175) KP1_0641 in NC_012731


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 51.1 bits (174),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 28/58 (49%), Positives = 43/58 (75%), Gaps = 0/58 (0%)

Query  3   MNSDRFLRLRQVEDKIGFGKSWIYRQIQLQQFPPSIRLNSRHVAWLESEVDAWIHQRI  60
           M S ++LRLRQVE+K G+ +S IY  ++   FP SI++ +  VAWLESE+D WI++++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKL  58

176) ETA_24310 in NC_010694


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 50.8 bits (173),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 23/57 (41%), Positives = 45/57 (79%), Gaps = 0/57 (0%)

Query  4   NLIRMPEVLRRIGLGKAWVYKLISQGIFPKPVKIGSRSIAFVESEIDAWINQRIAER  60
           +L+R+ +V ++ GL ++ +Y  + +G FP+++KIG+ S+A +ESEID WIN+++++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

177) RSKD131_2324 in NC_011963


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 50.5 bits (172),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 25/54 (47%), Positives = 34/54 (63%), Gaps = 0/54 (0%)

Query  6   LRRPAVEEATGLSRSAIYELMSKGQFPRPVKLTGKAVAWPESAIAEWLAQRAAA  59
           LR   VE+ TGL RS IY  M  G FPR++K+   +VAW ES I EW+ ++ + 
Sbjct  7   LRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

178) ECABU_c03460 in NC_017631


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 50.5 bits (172),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 45/57 (79%), Gaps = 1/57 (1%)

Query  1   MANYNSLIRLSEVQRRTGYSKAWIYRLISQGRFPKQVKIGSRAIAFVESEIDEWIEK  57
           M++Y+ L+RL +V+++TG  ++ IY  + +G FP+ +KIG+ ++A +ESEIDEWI+K
Sbjct  1   MTSYQ-LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINK  56

179) ETEC_0317 in NC_017633


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 50.5 bits (172),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 45/57 (79%), Gaps = 1/57 (1%)

Query  1   MANYNSLIRLSEVQRRTGYSKAWIYRLISQGRFPKQVKIGSRAIAFVESEIDEWIEK  57
           M++Y+ L+RL +V+++TG  ++ IY  + +G FP+ +KIG+ ++A +ESEIDEWI+K
Sbjct  1   MTSYQ-LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINK  56

180) ELI_00935 in NC_007722


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 50.5 bits (172),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 25/56 (45%), Positives = 38/56 (68%), Gaps = 0/56 (0%)

Query  21  RLIHLPEVQHRVGLGRSTIYRWMAEGKFPGPVELGGYSVAWEERAIDVWISQRLDS  76
           +L++L +V+++ GL RS IY  M EG FP ++ +G  SVAW E  ID WI+++L  
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

181) BTI_1089 in NC_021173


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 50.3 bits (171),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 0/50 (0%)

Query  11  LMRRKQVEVETTLARSTIYDRMKAGTFPKAIRIGARSIVWRRADIDAWLA  60
           L+R +QVE  T L RS IY  MK G+FP++I+IG+ S+ W  ++ID W+ 
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWIN  55

182) ROD_20611 in NC_013716


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 50.3 bits (171),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 24/56 (43%), Positives = 40/56 (72%), Gaps = 0/56 (0%)

Query  18  RFIRVPDVLNRVGFSRTTLYERIKEGNFPDRVKIGPRCVAFVESEIDEWIEATIRN  73
           +++R+ +V ++ G+ R+ +Y  +KEG FP  +KIGP  VA +ESEIDEWI+  + +
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

183) Pmen_3994 in NC_009439


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 50.3 bits (171),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 26/56 (47%), Positives = 42/56 (75%), Gaps = 1/56 (1%)

Query  21  LLQLPEVCRQAGFGKTAIYRMMKEGTFPEPIKIGPAS-RWSQIEVQAWIEKQKAAR  75
           LL+L +V +++G+ ++ IY  MKEG+FP +IKIGPAS  W + E++ WI+K+ + R
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

184) SerAS12_4093 in NC_015566


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 50.3 bits (171),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 25/55 (46%), Positives = 42/55 (77%), Gaps = 0/55 (0%)

Query  5   LIRLPDVQRRTGYSKAWIYRLMSEGKFPASVKIGTRAIAFVESEVDEWVNQRIIE  59
           L+RL +V+++TG  ++ IY  M EG FP S+KIG  ++A +ESE+DEW+N+++ +
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

185) SerAS13_4093 in NC_017573


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 50.3 bits (171),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 25/55 (46%), Positives = 42/55 (77%), Gaps = 0/55 (0%)

Query  5   LIRLPDVQRRTGYSKAWIYRLMSEGKFPASVKIGTRAIAFVESEVDEWVNQRIIE  59
           L+RL +V+++TG  ++ IY  M EG FP S+KIG  ++A +ESE+DEW+N+++ +
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

186) SerAS9_4092 in NC_015567


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 50.3 bits (171),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 25/55 (46%), Positives = 42/55 (77%), Gaps = 0/55 (0%)

Query  5   LIRLPDVQRRTGYSKAWIYRLMSEGKFPASVKIGTRAIAFVESEVDEWVNQRIIE  59
           L+RL +V+++TG  ++ IY  M EG FP S+KIG  ++A +ESE+DEW+N+++ +
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

187) AHML_07190 in NC_021290


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 50.0 bits (170),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 25/60 (42%), Positives = 40/60 (67%), Gaps = 0/60 (0%)

Query  5   LSQVTLLKRQQVEAATSLSRSTIYDMMSKGQFPKPIRLGAQRVAWRERDIIEWLEHQVSS  64
           ++   LL+ +QVE  T+L RS IY  M  G FP++I++G+  VAW E +I EW++ ++S 
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

188) Dda3937_00943 in NC_014500


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 49.8 bits (169),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 24/56 (43%), Positives = 43/56 (77%), Gaps = 0/56 (0%)

Query  5   LIRLPEVQRRTGYSKAWVYRLMARKQFPSAVKIGSRAIAFVESEIDEWINQRIAER  60
           L+RL +V+++TG  ++ +Y  M    FP ++KIG+ ++A +ESEIDEWIN+++++R
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

189) BRADO6209 in NC_009445


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 49.8 bits (169),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 38/55 (70%), Gaps = 0/55 (0%)

Query  6   RIIRLRTVLARTGLSRSTIYRKIAEGTFPAPLKISTNGSGWHDSEINSWIADPVG  60
           +++RLR V  +TGL RS IY  + EG+FP ++KI+  + +W +SEI+ WI   ++
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLS  59

190) A3UG_04565 in NC_018079


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 49.8 bits (169),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 26/56 (47%), Positives = 43/56 (77%), Gaps = 0/56 (0%)

Query  5   LIRLPEVQRRTGYSKAWIYRLLKERKFPQSVKIGSRSIAFVESEIDAWITQRIEER  60
           L+RL +V+++TG  ++ IY  +KE  FP+S+KIG+ S+A +ESEID WI +++ +R
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

191) alpA in NC_013892


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 49.8 bits (169),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 23/56 (42%), Positives = 44/56 (79%), Gaps = 0/56 (0%)

Query  9   NLIRLPEVQRRTGYSKAWIYKLISDGEFPKQIKLGSRSIAFIESEIDNWIAQRIAG  64
           +L+RL +V+++TG  ++ IY  + +G FP+ IK+G+ S+A +ESEID+WI +++++
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

192) alpA in NC_014228


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 49.8 bits (169),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 23/56 (42%), Positives = 44/56 (79%), Gaps = 0/56 (0%)

Query  9   NLIRLPEVQRRTGYSKAWIYKLISDGEFPKQIKLGSRSIAFIESEIDNWIAQRIAG  64
           +L+RL +V+++TG  ++ IY  + +G FP+ IK+G+ S+A +ESEID+WI +++++
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

193) BBta_0434 in NC_009485


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 49.8 bits (169),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 41/59 (70%), Gaps = 0/59 (0%)

Query  2   LASDRIVRLKTVLARTGLSRSTIYRKIAEGTFPPQIKISVNGAGWRESDIDRWVANPVA  60
           ++S +++RL+ V  +TGL RS IY  + EG+FP  IKI+  + +W ES+ID W+ + ++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLS  59

194) XBJ1_2671 in NC_013892


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 49.5 bits (168),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 25/55 (46%), Positives = 42/55 (77%), Gaps = 0/55 (0%)

Query  11  LIRLSEVQRRTGYSKAWIYRLIGEDKFPKQIKIGTRSVAFLESEVDGWIDQRIAE  65
           L+RL +V+++TG  ++ IY  + E+ FP+ IKIG  SVA LESE+D WI++++++
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

195) ENC_02870 in NC_021046


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 49.5 bits (168),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 23/57 (41%), Positives = 37/57 (65%), Gaps = 0/57 (0%)

Query  10  RFLRLPEVMHLCGLSRSTIYDLISREAFPKQISLGGKNVAWAQSEITAWMADRIAER  66
           ++LRL +V +  GL RS IY  +   AFP+ I +G  +VAW +SEI  W+  ++++R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

196) ECP_1932 in NC_008253


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 49.2 bits (167),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 24/51 (48%), Positives = 38/51 (75%), Gaps = 0/51 (0%)

Query  11  RFIRVPDVLNRVGFSRTTLYERIKEGNFPDRVKIGPRCVAFVESEIDEWIE  61
           +++R+ +V ++ G+ R+ +Y  +KEG FP  +KIGP  VA +ESEIDEWI+
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWIN  55

197) i14_2232 in NC_017652


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 49.2 bits (167),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 24/51 (48%), Positives = 38/51 (75%), Gaps = 0/51 (0%)

Query  11  RFIRVPDVLNRVGFSRTTLYERIKEGNFPDRVKIGPRCVAFVESEIDEWIE  61
           +++R+ +V ++ G+ R+ +Y  +KEG FP  +KIGP  VA +ESEIDEWI+
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWIN  55

198) i02_2232 in NC_017651


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 49.2 bits (167),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 24/51 (48%), Positives = 38/51 (75%), Gaps = 0/51 (0%)

Query  11  RFIRVPDVLNRVGFSRTTLYERIKEGNFPDRVKIGPRCVAFVESEIDEWIE  61
           +++R+ +V ++ G+ R+ +Y  +KEG FP  +KIGP  VA +ESEIDEWI+
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWIN  55

199) CKO_03476 in NC_009792


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 49.2 bits (167),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 27/58 (47%), Positives = 42/58 (73%), Gaps = 0/58 (0%)

Query  3   MNSDRFLRLRQVEDKIGFGKSWIYRQIQLQQFPPFIRLNSRHVAWLESEVDAWIHQRI  60
           M S ++LRLRQVE+K G+ +S IY  ++   FP  I++ +  VAWLESE+D WI++++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKL  58

200) CFSAN002050_11655 in NC_021818


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 49.2 bits (167),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 24/52 (47%), Positives = 36/52 (70%), Gaps = 1/52 (1%)

Query  1   MDLKEVCKAVGFKKVSIYSWMNAGEFPKSIKIGR-SVRWLSTEVEEWIAEKI  51
           + L++V +  G+K+  IY  M+ G FP+SIKIG  SV WL +E++EWI  K+
Sbjct  7   LRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKL  58

201) S70_17370 in NC_017731


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 49.2 bits (167),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 25/56 (45%), Positives = 42/56 (75%), Gaps = 0/56 (0%)

Query  10  NLIRLPEVMRRTGYGKAWIYRLIETGQFPKSVKIGTRSIAFVESEVDEWIANKIAE  65
           +L+RL +V ++TG  ++ IY  +  G FP+S+KIG  S+A +ESE+DEWI +K+++
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

202) XNC1_2586 in NC_014228


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 49.0 bits (166),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 26/55 (48%), Positives = 41/55 (75%), Gaps = 0/55 (0%)

Query  11  LIRLSEVQRRTGYSKAWIYRLIGEDKFPKQIKIGTRSVAFLESEVDGWIAQRISE  65
           L+RL +V+++TG  ++ IY  + E+ FP+ IKIG  SVA LESE+D WI +++S+
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

203) Caul_1143 in NC_010338


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 48.7 bits (165),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 22/51 (44%), Positives = 38/51 (75%), Gaps = 0/51 (0%)

Query  6   RILRIRTVLQRTGLSRSTLYRKIQDGSFPRQVQISIHGAGWRESAINHWIA  56
           ++LR+R V Q+TGL RS +Y  +++G+FPR ++I+  + +W ES I++WI 
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWIN  55

204) ESA_00625 in NC_009778


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 48.7 bits (165),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 36/55 (66%), Gaps = 0/55 (0%)

Query  1   MRLPEVINICGLSRSTIYDLICREQFPSQISLGGKNVAWLASEIDDWMQARIAQR  55
           +RL +V +  GL RS IY  +    FP  I +G  +VAWL SEID+W++ ++++R
Sbjct  7   LRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

205) ABLL_2170 in NC_017192


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 48.7 bits (165),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 21/52 (41%), Positives = 37/52 (72%), Gaps = 0/52 (0%)

Query  3   KFLRIKDVMDKTGIAKSTIWLWVKEEKFPKPIKISPRITVWDSDKVDEWMSR  54
           ++LR+++V +KTG+ +S I L +KE  FP++IKI+P    W    +DEW+++
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINK  56

206) Hneap_0482 in NC_013422


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 48.7 bits (165),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 21/52 (41%), Positives = 38/52 (74%), Gaps = 0/52 (0%)

Query  4   ILRLHDVLRITGASRSSIYLWVSAGIFPQPVKLGVRAVGWRRSEVQQWLDDR  55
           +LRL++V + TG  RS IYL +  G FP+++K+G  +V+W  SE+++W++ +
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKK  57

207) PCA10_07550 in NC_021499


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 48.7 bits (165),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 23/57 (41%), Positives = 38/57 (67%), Gaps = 1/57 (1%)

Query  10  RIMRLPTVKEKSGLGRTMIYDLMKEGRFPKCRRIAGSHIVGWDSWEIEAWVAEQLGE  66
           +++RL  V +K+GL R+ IY  MKEG FP+  +I G+  V+W   EI+ W+  +L++
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKI-GPASVAWLESEIDEWINKKLSD  60

208) W5S_3564 in NC_017845


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 48.4 bits (164),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 26/56 (47%), Positives = 43/56 (77%), Gaps = 0/56 (0%)

Query  6   KLLRLAEVKGRTGYSKAWIYKLIAQNRFPQPIKIGSRSIAFIESEIDEWINQRIAE  61
           +LLRL +V  +TG  ++ IY  + +  FP++IKIG+ S+A +ESEIDEWIN+++++
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

209) Mesop_4439 in NC_015675


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 48.4 bits (164),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 39/55 (71%), Gaps = 0/55 (0%)

Query  6   RIIRLKTVLARTGLSRSTIYRKIAEGTFPAQIKISVSGAGWRESDVNRWVNDPVS  60
           +++RL+ V  +TGL RS IY  + EG+FP  IKI+ ++ +W ES+++ W+N  +S
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLS  59

210) RPE_3260 in NC_008435


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 48.4 bits (164),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 38/55 (70%), Gaps = 0/55 (0%)

Query  2   LAPDRIVRMKTVLARTGLSRSTIYRKIAEGTFPPRIKISVNGAGWKESDIDRWIA  56
           +++ +++R++ V  +TGL RS IY  + EG+FP  IKI+  + +W ES+ID WI 
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWIN  55

211) Alide2_2695 in NC_015422


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 48.4 bits (164),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 23/57 (41%), Positives = 37/57 (65%), Gaps = 0/57 (0%)

Query  6   SSFTLLRLPNVMRLTGLARSTIYKLIAAGEFPAPRKLTRRAVAWPASEVEQWVVARV  62
           +S+ LLRL +V + TGL RS IY  +  G FP + K+   +VAW  SE+++W+  ++
Sbjct  2   TSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKL  58

212) RPC_0150 in NC_007925


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 48.4 bits (164),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 24/55 (44%), Positives = 37/55 (68%), Gaps = 0/55 (0%)

Query  6   RIIRLKTVLSRTGLSRSTIYRKITEGTFPAQIRISVNGAGWHESEINRWIADPVS  60
           +++RL+ V  +TGL RS IY  + EG+FP  I+I+  + +W ESEI+ WI   +S
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLS  59

213) VEA_001834 in NC_013456


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 48.2 bits (163),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 38/55 (70%), Gaps = 0/55 (0%)

Query  3   NFLNLEQVETKTTLCKSTIYKLMKNGEFPKNFTVSGKSKAWDEKEVEDWMMSKIG  57
           ++L L QVE KT L +S IY  MK+G FP+++ ++  S AW E E+++W+  K++
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLS  59

214) XNC1_3442 in NC_014228


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 47.9 bits (162),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 26/55 (48%), Positives = 40/55 (73%), Gaps = 0/55 (0%)

Query  11  LIRLSEVQLRTGYSKAWIYRLIGEDKFPKQIKIGTRSVAFLESEVDGWIAQRISE  65
           L+RL +V+ +TG  ++ IY  + E+ FP+ IKIG  SVA LESE+D WI +++S+
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

215) HP15_1087 in NC_017506


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 47.9 bits (162),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 42/57 (74%), Gaps = 6/57 (10%)

Query  10  KFIRLKVVIKKTGLSRASIYNRLKKSSKYYDAAFPKQIRIGGGAVAWIEYEIEDWME  66
           +++RL+ V +KTGL R+ IY  +K      ++AFP+ I+IG ++VAW+E EI++W++
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMK------EGAFPRSIKIGPASVAWLESEIDEWIN  55

216) YSA_03456 in NC_017986


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 47.7 bits (161),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 25/53 (48%), Positives = 37/53 (70%), Gaps = 0/53 (0%)

Query  16  KILRLRDVEAIVGLKRSTIYRKISEGLFPRQRLLCGSSVGWRNSEVQAWIRQR  68
           ++LRLR+VE   GLKRS IY  + EG FPR   +  +SV+W +SE++ WI ++
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKK  57

217) OA238_c14340 in NC_020908


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 47.7 bits (161),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 25/54 (47%), Positives = 32/54 (60%), Gaps = 0/54 (0%)

Query  6   LRRPAVEAATGLSRSSLYAMMGSGDFPRPIRIGRRAVAWPESAVLAWLADRPSA  59
           LR   VE  TGL RS +Y  M  G FPR+I+IG  +VAW ES +  W+  + S 
Sbjct  7   LRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

218) ECED1_3320 in NC_011745


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 47.4 bits (160),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 26/55 (48%), Positives = 41/55 (75%), Gaps = 0/55 (0%)

Query  7   FIRLSEVMRRTGYGRAWIYRLISLGRFPKPVKIGPRSVAFIESEVDEWINQRIDA  61
           ++RL +V ++TG  R+ IY  +  G FP+++KIGP SVA +ESE+DEWIN+++  
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

219) ECED1_2322 in NC_011745


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 47.4 bits (160),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 26/56 (47%), Positives = 40/56 (72%), Gaps = 0/56 (0%)

Query  11  KLIRLSEVIRKTGFGKTWIYKLISAGKFPKQIKIGDRAVAFIESEVDEWIYKAITA  66
           +L+RL +V +KTG+ ++ IY  +  G FP+ IKIG  +VA +ESE+DEWI K ++ 
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

220) A79E_1776 in NC_018522


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 47.4 bits (160),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 26/56 (47%), Positives = 40/56 (72%), Gaps = 0/56 (0%)

Query  11  KLIRLSEVIRKTGFGKTWIYKLISAGKFPKQIKIGERAVAFIESEVDEWIYKAITA  66
           +L+RL +V +KTG+ ++ IY  +  G FP+ IKIG  +VA +ESE+DEWI K ++ 
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

221) ECA2918 in NC_004547


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 47.4 bits (160),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 25/55 (46%), Positives = 39/55 (71%), Gaps = 0/55 (0%)

Query  12  LIRLPEVKRRTGFGKTWIYALIKSGRFPSQVKTGVRAVAFIESEVDAWIEKIISD  66
           L+RL +V ++TG+ ++ IY  +K G FP  +K G  +VA +ESE+D WI+K +SD
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

222) Entcl_1099 in NC_014618


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 47.4 bits (160),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 25/59 (43%), Positives = 40/59 (68%), Gaps = 6/59 (10%)

Query  5   SAVRILRLPAVIHKTGISRATIYDWLNPRSPRYDPTFPKKRKLGTQSVGWLESEIDEWL  63
           ++ ++LRL  V +KTG+ R+ IY  ++      + +FP+  K+G  SV+WLESEIDEW+
Sbjct  2   TSYQLLRLRQVEQKTGLKRSQIYLYMK------EGAFPRSIKIGPASVAWLESEIDEWI  54

223) STBHUCCB_9230 in NC_016832


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 47.1 bits (159),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 26/56 (47%), Positives = 41/56 (74%), Gaps = 0/56 (0%)

Query  11  KLIRLPEVKRRTGFGKTWIYTLIRAGKFPKQVKTGLRSIAFIESEIDEWIYKIISD  66
           +L+RL +V ++TG+ ++ IY  ++ G FP+ +K G  S+A +ESEIDEWI K +SD
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

224) TY21A_04400 in NC_021176


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 47.1 bits (159),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 26/56 (47%), Positives = 41/56 (74%), Gaps = 0/56 (0%)

Query  11  KLIRLPEVKRRTGFGKTWIYTLIRAGKFPKQVKTGLRSIAFIESEIDEWIYKIISD  66
           +L+RL +V ++TG+ ++ IY  ++ G FP+ +K G  S+A +ESEIDEWI K +SD
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

225) t04980 in NC_004631


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 47.1 bits (159),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 26/56 (47%), Positives = 41/56 (74%), Gaps = 0/56 (0%)

Query  11  KLIRLPEVKRRTGFGKTWIYTLIRAGKFPKQVKTGLRSIAFIESEIDEWIYKIISD  66
           +L+RL +V ++TG+ ++ IY  ++ G FP+ +K G  S+A +ESEIDEWI K +SD
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

226) AciX8_1756 in NC_016631


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 47.1 bits (159),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 22/54 (41%), Positives = 37/54 (69%), Gaps = 0/54 (0%)

Query  4   IIRLPAVLACTGLSRSSLYAQMAAKTFPQSISLGDRAVGWLQSEIESWQEQRIA  57
           ++RL  V   TGL RS +Y  M   +FP+SI +G  +V+WL+SEI+ W +++++
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLS  59

227) Sala_3216 in NC_008036


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 47.1 bits (159),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 22/54 (41%), Positives = 36/54 (67%), Gaps = 0/54 (0%)

Query  6   RIIRLKTVLDRTGLSRSTIYRKIAEGTFPTQVKISVHGAGWHESAINRWIADPV  59
           +++RL+ V ++TGL RS IY  + EG+FP  +KI+  + +W ES I+ WI   +
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKL  58

228) Xaut_0443 in NC_009720


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 46.9 bits (158),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 22/54 (41%), Positives = 37/54 (69%), Gaps = 0/54 (0%)

Query  3   TPERIIRLKTVLARTGLSRSTIYRKIAEGTFPAQLKISTNGAGWRESDINRWVA  56
           T+ +++RL+ V  +TGL RS IY  + EG+FP  +KI+  + +W ES+I+ W+ 
Sbjct  2   TSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWIN  55

229) Rpic_2749 in NC_010682


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 46.6 bits (157),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 22/51 (44%), Positives = 36/51 (71%), Gaps = 0/51 (0%)

Query  11  ILRRRQVEAATGLSRSSIYQRIKERTFPAAVQLGPRAVGWRAGDIEAFLAN  61
           +LR RQVE  TGL RS IY  +KE +FP ++++GP +V+W  ++I+  + +
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINK  56

230) SLG_29070 in NC_015976


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 46.6 bits (157),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 22/52 (43%), Positives = 35/52 (68%), Gaps = 0/52 (0%)

Query  6   KIIRLKTVLTRTGLSRSTLYRKIAEGSFPRQITISVHGTGWHESAVDRWIAN  57
           +++RL+ V  +TGL RS +Y  + EG+FPR I I+  + +W ES +D WI +
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINK  56

231) ambt_20755 in NC_015554


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 46.6 bits (157),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 23/56 (42%), Positives = 40/56 (72%), Gaps = 1/56 (1%)

Query  2   SVKIVRMKEVQRITGLSRSTIYAQIAKGQFPKQVKLTGARSVGWHEAAIIEWIEAR  57
           S +++R+++V++ TGL RS IY  +  G FP+ +K+ G+ SV+W E+ I EWI+ +
Sbjct  3   SYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKI-GPASVAWLESEIDEWINKK  57

232) CSSP291_03135 in NC_020260


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 46.6 bits (157),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 25/60 (42%), Positives = 42/60 (70%), Gaps = 6/60 (10%)

Query  3   VQSVKILRMRDVMLKTGLARATIYDWLNPKSPRYDATFPKQRRLGKQSVGWLESEIDQWV  62
           + S ++LR+R+V  KTGL R+ IY  ++      +++FP+  ++G  SV+WLESEID+W+
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMK------EGAFPRSIKIGPASVAWLESEIDEWI  54

233) Snov_2642 in NC_014217


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 46.6 bits (157),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 22/54 (41%), Positives = 37/54 (69%), Gaps = 0/54 (0%)

Query  3   TPERIIRLKTVLARTGLSRSTIYRKIAEGTFPAQLKISTNGAGWRESDINRWVA  56
           T+ +++RL+ V  +TGL RS IY  + EG+FP  +KI+  + +W ES+I+ W+ 
Sbjct  2   TSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWIN  55

234) alpA in NC_017574


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 46.3 bits (156),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 38/55 (70%), Gaps = 0/55 (0%)

Query  7   TALTILRRKQVEAATGLSRSSIYQRIKERTFPAAIQLGPRAVGWRAGDIEAFLAN  61
           T+  +LR +QVE  TGL RS IY  +KE +FP +I++GP +V+W  ++I+  + +
Sbjct  2   TSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINK  56

235) M636_20505 in NC_021848


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 45.8 bits (154),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 23/48 (48%), Positives = 36/48 (75%), Gaps = 0/48 (0%)

Query  2   EKTELSRSAIYRKMNDDAFPKSVNLGDRAVAWVESEVDYWVESILLTR  49
           +KT L RS IY  M+++AFP+S+++G  +VAW+ESE+D W++  L  R
Sbjct  14  QKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

236) Tcr_2205 in NC_007520


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 45.8 bits (154),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 23/51 (46%), Positives = 35/51 (69%), Gaps = 1/51 (1%)

Query  8   QLLPLPKVEMMIGLKKSKIYALIKTGEFPKN-RVIKGKALWLSSEIQNWIS  57
           QLL L +VE   GLK+S+IY  +K G FP++ ++  +   WL SEI++WI+
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWIN  55

237) Pecwa_1730 in NC_013421


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 45.8 bits (154),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 25/56 (45%), Positives = 40/56 (72%), Gaps = 0/56 (0%)

Query  11  RLIRLPEVKRRTGFGKTWIYELIKAGRFPSQVKTGLRSIAFIESEVDAWIEKIISD  66
           +L+RL +V ++TG+ ++ IY  +K G FP  +K G  S+A +ESE+D WI+K +SD
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

238) RPD_2277 in NC_007958


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 45.8 bits (154),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 21/51 (42%), Positives = 36/51 (71%), Gaps = 0/51 (0%)

Query  6   RIVRLKTVLARTGLSRSTIYRKIAEGTFPVQLRISSNGTGWHESDINRWIA  56
           +++RL+ V  +TGL RS IY  + EG+FP  ++I++ + +W ES+I+ WI 
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWIN  55

239) SeSA_A2907 in NC_011094


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 45.8 bits (154),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 26/56 (47%), Positives = 41/56 (74%), Gaps = 0/56 (0%)

Query  8   RLIRLPEVLQRTGYGKAWIYRLISEGRFPAPVKIGARAVAFVESEIDEWIDAVINS  63
           +L+RL +V Q+TG  ++ IY  + EG FP ++KIG+ +VA +ESEIDEWI+  ++ 
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

240) ECO55CA74_24450 in NC_017656


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 45.3 bits (152),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 38/50 (76%), Gaps = 0/50 (0%)

Query  11  LIRLPEVLKRTGFGKAWVYRLIKDGKFPAPVKIGTRAVAFVESEIDAWIQ  60
           L+RL +V ++TG+ ++ +Y  +K+G FP ++KIG  +VA +ESEID WI+
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWIN  55

241) SARI_00926 in NC_010067


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 45.0 bits (151),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 39/55 (71%), Gaps = 0/55 (0%)

Query  11  KLIRLSEVIRRTGFGKTWIYTLIKTGRFPSQVKTGVRAVAFIESEIDAWIDNAIA  65
           +L+RL +V ++TG+ ++ IY  +K G FP  +K G  +VA +ESEID WI++ ++
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLS  59

242) EC042_2847A in NC_017626


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 44.8 bits (150),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 39/55 (71%), Gaps = 0/55 (0%)

Query  11  RLIRLPEVLNRTGLCKAWIYRLISRNEFPSPIKLGERAIAFLESDIDKWIDEKIT  65
           +L+RL +V ++TGL ++ IY  +    FP +IK+G  ++A LES+ID WI+ K++
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLS  59

243) Z3946 in NC_002655


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 44.5 bits (149),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 23/56 (42%), Positives = 41/56 (74%), Gaps = 0/56 (0%)

Query  7   RLIRLPEVLHRTGYGKAWIYHLINQNRFPSPVKIGARSVAFIESEVDEWIQLTIEN  62
           +L+RL +V ++TG  ++ IY  +++  FP ++KIG+ SVA +ESE+DEWI+  + +
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

244) ECs3513 in NC_002695


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 44.5 bits (149),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 23/56 (42%), Positives = 41/56 (74%), Gaps = 0/56 (0%)

Query  7   RLIRLPEVLHRTGYGKAWIYHLINQNRFPSPVKIGARSVAFIESEVDEWIQLTIEN  62
           +L+RL +V ++TG  ++ IY  +++  FP ++KIG+ SVA +ESE+DEWI+  + +
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

245) ECSP_3595 in NC_013008


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 44.5 bits (149),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 23/56 (42%), Positives = 41/56 (74%), Gaps = 0/56 (0%)

Query  7   RLIRLPEVLHRTGYGKAWIYHLINQNRFPSPVKIGARSVAFIESEVDEWIQLTIEN  62
           +L+RL +V ++TG  ++ IY  +++  FP ++KIG+ SVA +ESE+DEWI+  + +
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

246) CDCO157_3275 in NC_017906


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 44.5 bits (149),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 23/56 (42%), Positives = 41/56 (74%), Gaps = 0/56 (0%)

Query  7   RLIRLPEVLHRTGYGKAWIYHLINQNRFPSPVKIGARSVAFIESEVDEWIQLTIEN  62
           +L+RL +V ++TG  ++ IY  +++  FP ++KIG+ SVA +ESE+DEWI+  + +
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

247) Ser39006_1276 in NC_022268


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 44.0 bits (147),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 27/56 (49%), Positives = 40/56 (72%), Gaps = 0/56 (0%)

Query  1   MTARRLIRLPEVMNKTGYSKAWIYRLISRGDFPEPIKIGIRASAFVESEIDEWIEN  56
           MT+ +L+RL +V +KTG  ++ IY  +  G FP +IKIG  + A +ESEIDEWI++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINK  56

248) ETAF_2788 in NC_017309


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 44.0 bits (147),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 24/51 (48%), Positives = 38/51 (75%), Gaps = 0/51 (0%)

Query  11  LIRLPEVLKRTGFGKAWIYRLISEGRFPAPVKIGVRAVAFVESEVDEWIQS  61
           L+RL +V ++TG+ ++ IY  + EG FP ++KIG  +VA +ESE+DEWI+ 
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINK  56

249) KPK_4428 in NC_011283


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 44.0 bits (147),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 23/56 (42%), Positives = 41/56 (74%), Gaps = 0/56 (0%)

Query  7   RLIRLSEVMNKTGFGKAWIYRLISQNRFPQPVKIGIRAIAFIESEIDEWIQLTIEN  62
           +L+RL +V +KTG+ ++ IY  + +  FP+++KIG  ++A +ESEIDEWI+  + +
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

250) alpA in NC_011741


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 44.0 bits (147),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 24/51 (48%), Positives = 38/51 (75%), Gaps = 0/51 (0%)

Query  8   LIRLPEVLKRTGFGKAWIYRLISEGRFPAPVKIGVRAVAFVESEVDEWIQS  58
           L+RL +V ++TG+ ++ IY  + EG FP ++KIG  +VA +ESE+DEWI+ 
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINK  56

251) ETAC_14735 in NC_020796


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 43.7 bits (146),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 24/51 (48%), Positives = 38/51 (75%), Gaps = 0/51 (0%)

Query  8   LIRLPEVLKRTGFGKAWIYRLISEGRFPAPVKIGVRAVAFVESEVDEWIQS  58
           L+RL +V ++TG+ ++ IY  + EG FP ++KIG  +VA +ESE+DEWI+ 
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINK  56

252) PAGR_g2494 in NC_017554


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 43.5 bits (145),  Expect = 7e-06, Method: Compositional matrix adjust.
 Identities = 27/56 (49%), Positives = 40/56 (72%), Gaps = 0/56 (0%)

Query  1   MTTRRLIRLPEVMNKTGYSKAWIYRLISKGVFPEPIKIGIRARAFVESEIDEWIEN  56
           MT+ +L+RL +V +KTG  ++ IY  +  G FP +IKIG  + A +ESEIDEWI++
Sbjct  1   MTSYQLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINK  56

253) SARI_00214 in NC_010067


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 43.5 bits (145),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 24/52 (47%), Positives = 38/52 (74%), Gaps = 0/52 (0%)

Query  7   RLIRLPEVLERTGYGKAWIYRLISEGRFPAPVKIGVRAVAFVESEVDEWIQS  58
           +L+RL +V ++TG  ++ IY  + EG FP ++KIG  +VA +ESE+DEWI+ 
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINK  56

254) Ent638_2904 in NC_009436


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 43.2 bits (144),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 24/56 (43%), Positives = 39/56 (70%), Gaps = 0/56 (0%)

Query  7   RLIRLPEVMNKTGYCKAWVYRLISEGRFPAPVKIGVRAVAFVESEVDEWIQSVIEA  62
           +L+RL +V +KTG  ++ +Y  + EG FP ++KIG  +VA +ESE+DEWI+  +  
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

255) DaAHT2_2155 in NC_014216


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 43.2 bits (144),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 19/47 (41%), Positives = 31/47 (66%), Gaps = 0/47 (0%)

Query  17  KVGLSDPTIWRLEKKGKFPKRLRLGGNSCGWLEHEVNEWINNRAAER  63
           K GL  + I    K G FP+ +++G  S +WLE E++EWIN++ ++R
Sbjct  15  KTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

256) SeAg_B2092 in NC_011149


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 42.9 bits (143),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 38/55 (70%), Gaps = 0/55 (0%)

Query  12  FIRLPEVIKRTGFGKTWIYELIKAGRFPSQVKTGIRAVAFIESEIDEWIEATIRN  66
           ++RL +V ++TG+ ++ IY  +K G FP  +K G  +VA +ESEIDEWI+  + +
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

257) SeD_A2334 in NC_011205


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 42.9 bits (143),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 38/55 (70%), Gaps = 0/55 (0%)

Query  12  FIRLPEVIKRTGFGKTWIYELIKAGRFPSQVKTGIRAVAFIESEIDEWIEATIRN  66
           ++RL +V ++TG+ ++ IY  +K G FP  +K G  +VA +ESEIDEWI+  + +
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

258) SEN1998 in NC_011294


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 42.9 bits (143),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 38/55 (70%), Gaps = 0/55 (0%)

Query  12  FIRLPEVIKRTGFGKTWIYELIKAGRFPSQVKTGIRAVAFIESEIDEWIEATIRN  66
           ++RL +V ++TG+ ++ IY  +K G FP  +K G  +VA +ESEIDEWI+  + +
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

259) SG2024 in NC_011274


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 42.9 bits (143),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 38/55 (70%), Gaps = 0/55 (0%)

Query  12  FIRLPEVIKRTGFGKTWIYELIKAGRFPSQVKTGIRAVAFIESEIDEWIEATIRN  66
           ++RL +V ++TG+ ++ IY  +K G FP  +K G  +VA +ESEIDEWI+  + +
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

260) SPUCDC_0899 in NC_022221


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 42.9 bits (143),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 38/55 (70%), Gaps = 0/55 (0%)

Query  12  FIRLPEVIKRTGFGKTWIYELIKAGRFPSQVKTGIRAVAFIESEIDEWIEATIRN  66
           ++RL +V ++TG+ ++ IY  +K G FP  +K G  +VA +ESEIDEWI+  + +
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

261) SPUL_0899 in NC_016831


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 42.9 bits (143),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 38/55 (70%), Gaps = 0/55 (0%)

Query  12  FIRLPEVIKRTGFGKTWIYELIKAGRFPSQVKTGIRAVAFIESEIDEWIEATIRN  66
           ++RL +V ++TG+ ++ IY  +K G FP  +K G  +VA +ESEIDEWI+  + +
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

262) I137_04075 in NC_021984


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 42.9 bits (143),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 38/55 (70%), Gaps = 0/55 (0%)

Query  12  FIRLPEVIKRTGFGKTWIYELIKAGRFPSQVKTGIRAVAFIESEIDEWIEATIRN  66
           ++RL +V ++TG+ ++ IY  +K G FP  +K G  +VA +ESEIDEWI+  + +
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD  60

263) PP1Y_AT16481 in NC_015580


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 41.4 bits (137),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 21/51 (42%), Positives = 35/51 (69%), Gaps = 0/51 (0%)

Query  7   RFLRMGDVTRKTGRSRAAIYRMIAEGTFPPQIPIGARAVGWRLSSVLEWME  57
           ++LR+ +V +KTG  R+ IY  + EG+FP  I IG+ +V+W  S + EW++
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWIN  55

264) Pecwa_1696 in NC_013421


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 41.4 bits (137),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 23/57 (41%), Positives = 39/57 (69%), Gaps = 0/57 (0%)

Query  6   RLIRFPEVMRKTGFGKAWLYRLISEERFPQPVKIGIRAVAFVEHEIDEWILSAIEKR  62
           +L+R+ +V +KTG+ ++ +Y  + E  FP+++KIG  +VA +E EIDEWI   +  R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

265) PputGB1_4148 in NC_010322


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 40.6 bits (134),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 22/49 (45%), Positives = 34/49 (70%), Gaps = 1/49 (2%)

Query  5   LLDRKEVCKRIGFSHTFVYKEMREGRFPKHRKIGNRS-RWLESEVDDWI  52
           LL  ++V ++ G+ ++ +Y  M+EG FP+  KIG  S  WLESE+D+WI
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWI  54

266) Nitsa_1826 in NC_014935


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 40.6 bits (134),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 21/51 (42%), Positives = 35/51 (69%), Gaps = 1/51 (1%)

Query  11  RLLNIKQVSEKTSLGQTKIYEMIKLNEFPPPVKLGRSR-RWRESDIDRWIA  60
           +LL ++QV +KT+L +++IY  +K   FP ++K+G +   W ES+ID WI 
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWIN  55

267) Ser39006_3441 in NC_022268


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 40.0 bits (132),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 20/47 (43%), Positives = 32/47 (69%), Gaps = 0/47 (0%)

Query  10  LIRVPEVLRRVGFSRTTMYELIKEGRFPDKVIIGARCVAFVESEIDG  56
           L+R+ +V ++ G+ R+ +Y  +KEG FP  + IG+  VA +ESEID 
Sbjct  6   LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDE  52

268) W5S_1640 in NC_017845


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 38.2 bits (125),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 22/48 (46%), Positives = 33/48 (69%), Gaps = 0/48 (0%)

Query  2   RKTGFGKAWIYRLISEERFPRPVKIGIRAVAFVENEIDEWILTAIEKR  49
           +KTG+ ++ IY  + E  FPR++KIG  +VA +E+EIDEWI   +  R
Sbjct  14  QKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61

269) VF_A0523 in NC_006841


> AJ236887|2|G2|5420119|CAB46594.1|Yersinia_pseudotuberculosis|+|1939..2124|-|-|DNA-binding 
protein
Length=61

 Score = 36.6 bits (119),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 28/57 (50%), Positives = 45/57 (79%), Gaps = 0/57 (0%)

Query  2   RFLRLKEVMALTALGRSSIYKFMSEGRFPQTISLGDRavawveseveewMHERLSQR  58
           ++LRL++V   T+L RS IY +M EG FP++I +G  +VAW+ESE++EW++ +LS+R
Sbjct  5   QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR  61