Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of orf2 gene of AF346500

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) PAU_03263
( YP_003042093.1 )

hypothetical protein

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

4e-106

2) RSPO_m01197
( YP_006032369.1 )

transmembrane protein

NC_017575
(Ralstonia solanacearum Po82)

3e-78

3) RSPO_m01198
( YP_006032370.1 )

transmembrane protein

NC_017575
(Ralstonia solanacearum Po82)

1e-69

4) TM1040_3238
( YP_611474.1 )

hypothetical protein

NC_008043
(Ruegeria sp. TM1040)

5e-64

5) PGA2_239p1280
( YP_006589713.1 )

hypothetical protein

NC_018421
(Phaeobacter gallaeciensis 2.10)

1e-63

6) XFLM_09155
( YP_006001089.1 )

hypothetical protein

NC_017562
(Xylella fastidiosa GB514)

3e-58

7) XfasM23_0749
( YP_001829462.1 )

hypothetical protein

NC_010577
(Xylella fastidiosa M23)

3e-58

8) PD0713
( NP_778933.1 )

hypothetical protein

NC_004556
(Xylella fastidiosa Temecula1)

3e-58

9) AHML_01115
( YP_008041355.1 )

hypothetical protein

NC_021290
(Aeromonas hydrophila ML09-119)

1e-55

• Sequence Alignments

1) PAU_03263 in NC_012962


> AF346500|2|G2|27479641|AAO17168.1|Photorhabdus_luminescens_W14|+|695..1432|orf2|-|Orf2
Length=245

 Score =  376 bits (1415),  Expect = 4e-106, Method: Compositional matrix adjust.
 Identities = 216/245 (89%), Positives = 234/245 (96%), Gaps = 0/245 (0%)

Query  1    MNSSVTSTSENLVLSYLDGRQPTVGIENVNKVLFSIGVRVSTTPIPKEARPILEASKTRA  60
            MN+S  S+SENLVLSYLDGRQPTVGIEN+NK+LFS+GVRVST+PIP EA+PILE SKTRA
Sbjct  1    MNNSAISASENLVLSYLDGRQPTVGIENINKILFSVGVRVSTAPIPEEAKPILEVSKTRA  60

Query  61   LTEEESEKLISLFPLHRGELLEQIRLAGRQPEAHRGGFLSTSEVGVAPYPKVYDMKAISA  120
            LT EESEKLISLF+LHRGELLEQIRLAGRQPEAHRGGFLS SE+GVAPYPKVYDMKAIS 
Sbjct  61   LTGEESEKLISLFSLHRGELLEQIRLAGRQPEAHRGGFLSISEIGVAPYPKVYDMKAISV  120

Query  121  ETRKTVLEKFGKLHVNSAENGMGIDEVMTVVAGGPWTWFFRLPDGVITKLSIGRVEAGDP  180
            E+RKTVLEKFGKLHVNS+E+GMGIDEVMTVVAGGPWTWFFRLP G I+KLSIGRVE+GDP
Sbjct  121  EARKTVLEKFGKLHVNSSEDGMGIDEVMTVVAGGPWTWFFRLPAGEIAKLSIGRVETGDP  180

Query  181  AWRLSYPGLGMHAAFLDAEDGLIVAFAHGPKHFVMRYDEPSVDSAEMLGTNPWIDFSVDI  240
            AWRLSYPGLGMHA+FLDA DGL+VAFAHGPKHFVMRYDEPSVD++EMLGTNPWIDFS DI
Sbjct  181  AWRLSYPGLGMHAGFLDAKDGLLVAFAHGPKHFVMRYDEPSVDGTEMLGTNPWIDFSGDI  240

Query  241  PKLVK  245
            PKLVK
Sbjct  241  PKLVK  245

2) RSPO_m01197 in NC_017575


> AF346500|2|G2|27479641|AAO17168.1|Photorhabdus_luminescens_W14|+|695..1432|orf2|-|Orf2
Length=245

 Score =  284 bits (1063),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 150/241 (63%), Positives = 206/241 (86%), Gaps = 1/241 (0%)

Query  25   TPLAQAKDIVKLQFSDGRDNVAGVENVNAVLHSIGVHASTLPIPEEAKPILKASQTRAIR  84
            ++++ + ++V L + DGR+   G+EN+N +L S+GV+ ST PIPEEAKPIL  S+TRA+ 
Sbjct  4    SAISASENLV-LSYLDGRQPTVGIENINKILFSVGVRVSTAPIPEEAKPILEVSKTRALT  62

Query  85   DEEQRKLISIFNLHRGQLLEQVQLAGRTPVAPRGGYLSTTELDTPPYPKVYDMMALTPEV  144
            +EE  KLIS+F+LHRG+LLEQ++LAGR P A RGG+LS +E++ +PYPKVYDM A++ E 
Sbjct  63   GEESEKLISLFSLHRGELLEQIRLAGRQPEAHRGGFLSISEIGVAPYPKVYDMKAISVEA  122

Query  145  HKTVLNKYGRLHVNTSDNGMGIDEVMTVVSGGPFTWVFVMPDGVLARLTVDRVSLGDPAI  204
            +KTVL+K+G+LHVN+S++GMGIDEVMTVV+GGP TW F +P G +A+L+++RV  GDPA 
Sbjct  123  RKTVLEKFGKLHVNSSEDGMGIDEVMTVVAGGPWTWFFRLPAGEIAKLSIGRVETGDPAW  182

Query  205  RLSYPGLGMHAGYMDPKQGVIVAFAHGPKNFVMRYEEPSVPHAELLGTNAWVDFSGDMPK  264
            RLSYPGLGMHAG++D+K+G++VAFAHGPK+FVMRY+EPSV  +E+LGTN+W+DFSGD+PK
Sbjct  183  RLSYPGLGMHAGFLDAKDGLLVAFAHGPKHFVMRYDEPSVDGTEMLGTNPWIDFSGDIPK  242

Query  265  L  265
            L
Sbjct  243  L  243

3) RSPO_m01198 in NC_017575


> AF346500|2|G2|27479641|AAO17168.1|Photorhabdus_luminescens_W14|+|695..1432|orf2|-|Orf2
Length=245

 Score =  255 bits (952),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 137/236 (59%), Positives = 191/236 (81%), Gaps = 0/236 (0%)

Query  2    NTVKLQFSDGRSDVTGVENVNAVLRSVGVRASTLPIPEEAGPILKASRTRAISEEEQRRL  61
            + + L + DGR    G+EN+N +L SVGVR ST PIPEEA PIL  S+TRA++ EE  +L
Sbjct  10   ENLVLSYLDGRQPTVGIENINKILFSVGVRVSTAPIPEEAKPILEVSKTRALTGEESEKL  69

Query  62   IAIFSLNRAELLEQIRLAGRTPEVHRGGYLSTVEGDTPPYPKVYDMQALTPELRAWVLNR  121
            I++FSL+R+ELLEQIRLAGR PE HRGG+LS  E + +PYPKVYDM+A++ E R  VL++
Sbjct  70   ISLFSLHRGELLEQIRLAGRQPEAHRGGFLSISEIGVAPYPKVYDMKAISVEARKTVLEK  129

Query  122  YGRLHVNTSDNGAGIDEVMTVVSGGPFTWVFVLPDGVLARLTVAPIEPDGPALRLSYPGL  181
            +G+LHVN+S++G GIDEVMTVV+GGP TW F LP G +A+L+++ +E ++PA RLSYPGL
Sbjct  130  FGKLHVNSSEDGMGIDEVMTVVAGGPWTWFFRLPAGEIAKLSIGRVETGDPAWRLSYPGL  189

Query  182  GMHAGYMDPSHGLIVAYAHGPETFSIRFGEPGIPHAELLNTNAWVDFSGDMPRLLD  237
            GMHAG++D+ +GL+VA+AHGP  F +R++EP++  +E+L TN+W+DFSGD+P+L+ 
Sbjct  190  GMHAGFLDAKDGLLVAFAHGPKHFVMRYDEPSVDGTEMLGTNPWIDFSGDIPKLVK  245

4) TM1040_3238 in NC_008043


> AF346500|2|G2|27479641|AAO17168.1|Photorhabdus_luminescens_W14|+|695..1432|orf2|-|Orf2
Length=245

 Score =  237 bits (883),  Expect = 5e-64, Method: Compositional matrix adjust.
 Identities = 131/244 (54%), Positives = 184/244 (76%), Gaps = 0/244 (0%)

Query  21   HAGAEDTAGLLKLEYTDGRSITLGVEDVNTVLHSVGVRVSTVAIPEQARPILEASRHRAI  80
            + +A  ++  L L Y DGR  T+G+E++N +L SVGVRVST +IPE+A+PILE S+ RA+
Sbjct  2    NNSAISASENLVLSYLDGRQPTVGIENINKILFSVGVRVSTAPIPEEAKPILEVSKTRAL  61

Query  81   TAEEESQLITDFALSRKDLLTEIALAGREPTVENGGSLTTSEPGVAPYPKVYDMNKMDAQ  140
            T+EE  +LI+ F+L R +LL +I LAGR+P  + GG L+ SE GVAPYPKVYDM+ +  +
Sbjct  62   TGEESEKLISLFSLHRGELLEQIRLAGRQPEAHRGGFLSISEIGVAPYPKVYDMKAISVE  121

Query  141  TRIWVHKKFGPLHVNHAEDGTGIDEVMTIVSGGPWVWFFELPGDVIGKLTLGHVGLEGEA  200
            +R  V  KFG LHVN +EDG GIDEVMT+V+GGPW WFF LP++ I+KL++G+V   + A
Sbjct  122  ARKTVLEKFGKLHVNSSEDGMGIDEVMTVVAGGPWTWFFRLPAGEIAKLSIGRVETGDPA  181

Query  201  WRISYPGIRPHGGFLDPEYGLVVAYAHGPEQFEIHFDADNVAGSRLNGTNAWIDMSGEKP  260
            WR+SYPG+  H+GFLD+  GL+VA+AHGP +F +++D  +V G+ + GTN+WID SG+ P
Sbjct  182  WRLSYPGLGMHAGFLDAKDGLLVAFAHGPKHFVMRYDEPSVDGTEMLGTNPWIDFSGDIP  241

Query  261  LLLD  264
             L+ 
Sbjct  242  KLVK  245

5) PGA2_239p1280 in NC_018421


> AF346500|2|G2|27479641|AAO17168.1|Photorhabdus_luminescens_W14|+|695..1432|orf2|-|Orf2
Length=245

 Score =  235 bits (878),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 124/232 (54%), Positives = 176/232 (76%), Gaps = 0/232 (0%)

Query  64   LEYTDGRPASLGVEDVNAVLQRAGVRVGTVAIPDQALPILETSRSRAITAEEEAQLISAF  123
            L Y DGR +++G+E++N +L   GVRV+T +IP++A PILE S++RA+T+EE  +LIS F
Sbjct  14   LSYLDGRQPTVGIENINKILFSVGVRVSTAPIPEEAKPILEVSKTRALTGEESEKLISLF  73

Query  124  ELTREDLLTEIAAAGRQPTVENGGSLTTSEPGVAPYPKVYDMNKMDAETRVWVHKKFGPL  183
             L R +LL +I  AGRQP  + GG L+ SE GVAPYPKVYDM+ +  E+R  V  KFG L
Sbjct  74   SLHRGELLEQIRLAGRQPEAHRGGFLSISEIGVAPYPKVYDMKAISVEARKTVLEKFGKL  133

Query  184  HINHAEDGTGIDEVMTVVSGGPWVWFFELPGDVIGKLTLGHVGPEGEGWRISYPGIRPHG  243
            H+N +EDG GIDEVMTVV+GGPW WFF LP++ I+KL++G+V   + +WR+SYPG+  H+
Sbjct  134  HVNSSEDGMGIDEVMTVVAGGPWTWFFRLPAGEIAKLSIGRVETGDPAWRLSYPGLGMHA  193

Query  244  GFLNPEYGLVVAYAHGPEQFEIHFDADNVAGSRLNGTNAWIDFAGEKPVLLD  295
            GFL++  GL+VA+AHGP +F +++D  +V G+ + GTN+WIDF+G+ P L+ 
Sbjct  194  GFLDAKDGLLVAFAHGPKHFVMRYDEPSVDGTEMLGTNPWIDFSGDIPKLVK  245

6) XFLM_09155 in NC_017562


> AF346500|2|G2|27479641|AAO17168.1|Photorhabdus_luminescens_W14|+|695..1432|orf2|-|Orf2
Length=245

 Score =  218 bits (810),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 125/242 (52%), Positives = 175/242 (73%), Gaps = 2/242 (0%)

Query  13   MTSGGVMANDIVTLKFSDARKDVKGIKAVNAVLNPIGVNVTTIEIPEAAKPILRASESRA  72
            M ++++ A++ + L + D+R+   GI  +N +L ++GV V+T  IPE AKPIL  S +RA
Sbjct  1    MNNSAISASENLVLSYLDGRQPTVGIENINKILFSVGVRVSTAPIPEEAKPILEVSKTRA  60

Query  73   LTKEEHAFLIKEFNLTQEQLLEQIKLAGRTPAVKGGGVLT-EETGFGPYPKVYDMLSLDK  131
            LT EE   LI  F+L + +LLEQI+LAGR P    GG L+  E G +PYPKVYDM ++  
Sbjct  61   LTGEESEKLISLFSLHRGELLEQIRLAGRQPEAHRGGFLSISEIGVAPYPKVYDMKAISV  120

Query  132  ETHKGVLEKYGRMHVNSAEDGTDVDEVMTVVSGGPFRWGFTLKDGSIARFQVEKVGLNDK  191
            E++K VLEK+G++HVNS+EDG ++DEVMTVV+GGP  W F L  G IA++ + +V   D 
Sbjct  121  EARKTVLEKFGKLHVNSSEDGMGIDEVMTVVAGGPWTWFFRLPAGEIAKLSIGRVETGDP  180

Query  192  AVRVSYHGLGMHAGIMDAKQGLIVAFVHGPQEFTMRYKANVPLPHAKLLGTNPWIDFSGN  251
            A R+SY GLGMHAG++DAK+GL+VAF HGP++F MRY  + ++  + +LGTNPWIDFSG+
Sbjct  181  AWRLSYPGLGMHAGFLDAKDGLLVAFAHGPKHFVMRY-DEPSVDGTEMLGTNPWIDFSGD  239

Query  252  YP  253
             P
Sbjct  240  IP  241

7) XfasM23_0749 in NC_010577


> AF346500|2|G2|27479641|AAO17168.1|Photorhabdus_luminescens_W14|+|695..1432|orf2|-|Orf2
Length=245

 Score =  218 bits (810),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 125/242 (52%), Positives = 175/242 (73%), Gaps = 2/242 (0%)

Query  13   MTSGGVMANDIVTLKFSDARKDVKGIKAVNAVLNPIGVNVTTIEIPEAAKPILRASESRA  72
            M ++++ A++ + L + D+R+   GI  +N +L ++GV V+T  IPE AKPIL  S +RA
Sbjct  1    MNNSAISASENLVLSYLDGRQPTVGIENINKILFSVGVRVSTAPIPEEAKPILEVSKTRA  60

Query  73   LTKEEHAFLIKEFNLTQEQLLEQIKLAGRTPAVKGGGVLT-EETGFGPYPKVYDMLSLDK  131
            LT EE   LI  F+L + +LLEQI+LAGR P    GG L+  E G +PYPKVYDM ++  
Sbjct  61   LTGEESEKLISLFSLHRGELLEQIRLAGRQPEAHRGGFLSISEIGVAPYPKVYDMKAISV  120

Query  132  ETHKGVLEKYGRMHVNSAEDGTDVDEVMTVVSGGPFRWGFTLKDGSIARFQVEKVGLNDK  191
            E++K VLEK+G++HVNS+EDG ++DEVMTVV+GGP  W F L  G IA++ + +V   D 
Sbjct  121  EARKTVLEKFGKLHVNSSEDGMGIDEVMTVVAGGPWTWFFRLPAGEIAKLSIGRVETGDP  180

Query  192  AVRVSYHGLGMHAGIMDAKQGLIVAFVHGPQEFTMRYKANVPLPHAKLLGTNPWIDFSGN  251
            A R+SY GLGMHAG++DAK+GL+VAF HGP++F MRY  + ++  + +LGTNPWIDFSG+
Sbjct  181  AWRLSYPGLGMHAGFLDAKDGLLVAFAHGPKHFVMRY-DEPSVDGTEMLGTNPWIDFSGD  239

Query  252  YP  253
             P
Sbjct  240  IP  241

8) PD0713 in NC_004556


> AF346500|2|G2|27479641|AAO17168.1|Photorhabdus_luminescens_W14|+|695..1432|orf2|-|Orf2
Length=245

 Score =  218 bits (810),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 125/242 (52%), Positives = 175/242 (73%), Gaps = 2/242 (0%)

Query  13   MTSGGVMANDIVTLKFSDARKDVKGIKAVNAVLNPIGVNVTTIEIPEAAKPILRASESRA  72
            M ++++ A++ + L + D+R+   GI  +N +L ++GV V+T  IPE AKPIL  S +RA
Sbjct  1    MNNSAISASENLVLSYLDGRQPTVGIENINKILFSVGVRVSTAPIPEEAKPILEVSKTRA  60

Query  73   LTKEEHAFLIKEFNLTQEQLLEQIKLAGRTPAVKGGGVLT-EETGFGPYPKVYDMLSLDK  131
            LT EE   LI  F+L + +LLEQI+LAGR P    GG L+  E G +PYPKVYDM ++  
Sbjct  61   LTGEESEKLISLFSLHRGELLEQIRLAGRQPEAHRGGFLSISEIGVAPYPKVYDMKAISV  120

Query  132  ETHKGVLEKYGRMHVNSAEDGTDVDEVMTVVSGGPFRWGFTLKDGSIARFQVEKVGLNDK  191
            E++K VLEK+G++HVNS+EDG ++DEVMTVV+GGP  W F L  G IA++ + +V   D 
Sbjct  121  EARKTVLEKFGKLHVNSSEDGMGIDEVMTVVAGGPWTWFFRLPAGEIAKLSIGRVETGDP  180

Query  192  AVRVSYHGLGMHAGIMDAKQGLIVAFVHGPQEFTMRYKANVPLPHAKLLGTNPWIDFSGN  251
            A R+SY GLGMHAG++DAK+GL+VAF HGP++F MRY  + ++  + +LGTNPWIDFSG+
Sbjct  181  AWRLSYPGLGMHAGFLDAKDGLLVAFAHGPKHFVMRY-DEPSVDGTEMLGTNPWIDFSGD  239

Query  252  YP  253
             P
Sbjct  240  IP  241

9) AHML_01115 in NC_021290


> AF346500|2|G2|27479641|AAO17168.1|Photorhabdus_luminescens_W14|+|695..1432|orf2|-|Orf2
Length=245

 Score =  209 bits (776),  Expect = 1e-55, Method: Compositional matrix adjust.
 Identities = 123/234 (53%), Positives = 172/234 (74%), Gaps = 2/234 (0%)

Query  23   AGDLVSVQFSDGRPAMIGVEAVNKALNPIGVNVVTVDIPDAARPLLEASHHRALTKAEHS  82
            A++ + + + DGR + +G+E +NK L ++GV V T  IP+ A+P+LE S  RALT  E  
Sbjct  8    ASENLVLSYLDGRQPTVGIENINKILFSVGVRVSTAPIPEEAKPILEVSKTRALTGEESE  67

Query  83   TLIAAFNLNQGELLEQARLAGRAPAVQggg-vateetgvgPYPKVYDLMALDEHTRSAVL  141
             LI+ F+L++GELLEQ RLAGR P  + GG ++  E GV+PYPKVYD+ A+  ++R +VL
Sbjct  68   KLISLFSLHRGELLEQIRLAGRQPEAHRGGFLSISEIGVAPYPKVYDMKAISVEARKTVL  127

Query  142  GKYGRMHVNSAEDGTDIDEVMTVVSGGPFRWGFTLQDGSIARFQIDKVGLEDKAVRISYH  201
             K+G++HVNS+EDG +IDEVMTVV+GGP  W F L  G IA++ I++V   D A R+SY 
Sbjct  128  EKFGKLHVNSSEDGMGIDEVMTVVAGGPWTWFFRLPAGEIAKLSIGRVETGDPAWRLSYP  187

Query  202  GLGMHAGLMDAKQGLLVAFAHGPRAFTMRY-QADVPHAQLLGTNPWADVGISLP  254
            GLGMHAG++DAK+GLLVAFAHGP+ F MRY ++ V  +++LGTNPW D +  +P
Sbjct  188  GLGMHAGFLDAKDGLLVAFAHGPKHFVMRYDEPSVDGTEMLGTNPWIDFSGDIP  241