Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of shiB gene of AF335540

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SFxv_4028
( YP_005729299.1 )

hypothetical protein

NC_017328
(Shigella flexneri 2002017)

2e-61

2) shiB
( NP_839236.1 )

hypothetical protein

NC_004741
(Shigella flexneri 2457T)

2e-61

3) shiB
( NP_709439.1 )

hypothetical protein

NC_004337
(Shigella flexneri 301)

2e-61

4) shiB
( YP_691183.1 )

hypothetical protein

NC_008258
(Shigella flexneri 8401)

5e-61

• Sequence Alignments

1) SFxv_4028 in NC_017328


> AF335540|2|G1|14626622|AAK71629.1|Shigella_boydii_0-1392|+|1800..2249|shiB|-|ShiB
Length=149

 Score =  228 bits (849),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 136/143 (96%), Positives = 141/143 (99%), Gaps = 0/143 (0%)

Query  1    MDENALRFASYWRNSLADAESGKGCFERKDAQNFTHWHGIAAGRLDEAIVNKFFKGEKDD  60
            MDENAL F+SYWRNSLADAESGKG FERKDA+NFTHWHGIAAGRLDEAIV+KFFKGEKDD
Sbjct  1    MDENALGFTSYWRNSLADAESGKGSFERKDAKNFTHWHGIAAGRLDEAIVSKFFKGEKDD  60

Query  61   VETVNVILRPKVYFRLLQHGKDRSAGTPDIVTPIVTPALLSREGFLYPTPATSIPRDLLE  120
            VETV+VILRPKVYFRLLQHGKDRSAG+PDIVTPIVTPALLSREGFLYPTPATSIPRDLLE
Sbjct  61   VETVDVILRPKVYFRLLQHGKDRSAGAPDIVTPIVTPALLSREGFLYPTPATSIPRDLLE  120

Query  121  PLPKGAFSIGEIGQYDKYKTTHT  143
            PLPKGAFSIGEIGQYDKYKTTHT
Sbjct  121  PLPKGAFSIGEIGQYDKYKTTHT  143

2) shiB in NC_004741


> AF335540|2|G1|14626622|AAK71629.1|Shigella_boydii_0-1392|+|1800..2249|shiB|-|ShiB
Length=149

 Score =  228 bits (849),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 136/143 (96%), Positives = 141/143 (99%), Gaps = 0/143 (0%)

Query  1    MDENALRFASYWRNSLADAESGKGCFERKDAQNFTHWHGIAAGRLDEAIVNKFFKGEKDD  60
            MDENAL F+SYWRNSLADAESGKG FERKDA+NFTHWHGIAAGRLDEAIV+KFFKGEKDD
Sbjct  1    MDENALGFTSYWRNSLADAESGKGSFERKDAKNFTHWHGIAAGRLDEAIVSKFFKGEKDD  60

Query  61   VETVNVILRPKVYFRLLQHGKDRSAGTPDIVTPIVTPALLSREGFLYPTPATSIPRDLLE  120
            VETV+VILRPKVYFRLLQHGKDRSAG+PDIVTPIVTPALLSREGFLYPTPATSIPRDLLE
Sbjct  61   VETVDVILRPKVYFRLLQHGKDRSAGAPDIVTPIVTPALLSREGFLYPTPATSIPRDLLE  120

Query  121  PLPKGAFSIGEIGQYDKYKTTHT  143
            PLPKGAFSIGEIGQYDKYKTTHT
Sbjct  121  PLPKGAFSIGEIGQYDKYKTTHT  143

3) shiB in NC_004337


> AF335540|2|G1|14626622|AAK71629.1|Shigella_boydii_0-1392|+|1800..2249|shiB|-|ShiB
Length=149

 Score =  228 bits (849),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 136/143 (96%), Positives = 141/143 (99%), Gaps = 0/143 (0%)

Query  1    MDENALRFASYWRNSLADAESGKGCFERKDAQNFTHWHGIAAGRLDEAIVNKFFKGEKDD  60
            MDENAL F+SYWRNSLADAESGKG FERKDA+NFTHWHGIAAGRLDEAIV+KFFKGEKDD
Sbjct  1    MDENALGFTSYWRNSLADAESGKGSFERKDAKNFTHWHGIAAGRLDEAIVSKFFKGEKDD  60

Query  61   VETVNVILRPKVYFRLLQHGKDRSAGTPDIVTPIVTPALLSREGFLYPTPATSIPRDLLE  120
            VETV+VILRPKVYFRLLQHGKDRSAG+PDIVTPIVTPALLSREGFLYPTPATSIPRDLLE
Sbjct  61   VETVDVILRPKVYFRLLQHGKDRSAGAPDIVTPIVTPALLSREGFLYPTPATSIPRDLLE  120

Query  121  PLPKGAFSIGEIGQYDKYKTTHT  143
            PLPKGAFSIGEIGQYDKYKTTHT
Sbjct  121  PLPKGAFSIGEIGQYDKYKTTHT  143

4) shiB in NC_008258


> AF335540|2|G1|14626622|AAK71629.1|Shigella_boydii_0-1392|+|1800..2249|shiB|-|ShiB
Length=149

 Score =  226 bits (844),  Expect = 5e-61, Method: Compositional matrix adjust.
 Identities = 135/143 (95%), Positives = 141/143 (99%), Gaps = 0/143 (0%)

Query  1    MDENALRFASYWRNSLADAESGKGCFEQKDAQNFTHWHGIAAGRLDEAIVNKFFKGEKDD  60
            MDENAL F+SYWRNSLADAESGKG FE+KDA+NFTHWHGIAAGRLDEAIV+KFFKGEKDD
Sbjct  1    MDENALGFTSYWRNSLADAESGKGSFERKDAKNFTHWHGIAAGRLDEAIVSKFFKGEKDD  60

Query  61   VETVNVILRPKVYFRLLQHGKDRSAGTPDIVTPIVTPALLSREGFLYPTPATSIPRDLLE  120
            VETV+VILRPKVYFRLLQHGKDRSAG+PDIVTPIVTPALLSREGFLYPTPATSIPRDLLE
Sbjct  61   VETVDVILRPKVYFRLLQHGKDRSAGAPDIVTPIVTPALLSREGFLYPTPATSIPRDLLE  120

Query  121  PLPKGAFSIGEIGQYDKYKTTHT  143
            PLPKGAFSIGEIGQYDKYKTTHT
Sbjct  121  PLPKGAFSIGEIGQYDKYKTTHT  143