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PAthogenisity Island DataBase (PAI DB)

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Homologs of rstR gene of AF220606

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

• Sequence Alignments

1) rstR in NC_012582


> AF220606|2|G1|6851391|AAF29541.1|Vibrio_cholerae_86015|-|625..960|rstR|-|RstR
Length=111

 Score =  178 bits (658),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%), Gaps = 0/111 (0%)

Query  1    MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL  60
            MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL
Sbjct  1    MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL  60

Query  61   VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR  111
            VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR
Sbjct  61   VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR  111

2) rstR in NC_012582


> AF220606|2|G1|6851391|AAF29541.1|Vibrio_cholerae_86015|-|625..960|rstR|-|RstR
Length=111

 Score =  178 bits (658),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%), Gaps = 0/111 (0%)

Query  1    MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL  60
            MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL
Sbjct  1    MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL  60

Query  61   VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR  111
            VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR
Sbjct  61   VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR  111

3) rstR in NC_012583


> AF220606|2|G1|6851391|AAF29541.1|Vibrio_cholerae_86015|-|625..960|rstR|-|RstR
Length=111

 Score =  178 bits (658),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%), Gaps = 0/111 (0%)

Query  1    MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL  60
            MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL
Sbjct  1    MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL  60

Query  61   VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR  111
            VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR
Sbjct  61   VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR  111

4) VC0395_0505 in NC_009456


> AF220606|2|G1|6851391|AAF29541.1|Vibrio_cholerae_86015|-|625..960|rstR|-|RstR
Length=111

 Score =  178 bits (658),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%), Gaps = 0/111 (0%)

Query  1    MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL  60
            MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL
Sbjct  1    MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL  60

Query  61   VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR  111
            VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR
Sbjct  61   VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR  111

5) VC0395_A1067 in NC_009457


> AF220606|2|G1|6851391|AAF29541.1|Vibrio_cholerae_86015|-|625..960|rstR|-|RstR
Length=111

 Score =  178 bits (658),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%), Gaps = 0/111 (0%)

Query  1    MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL  60
            MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL
Sbjct  1    MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL  60

Query  61   VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR  111
            VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR
Sbjct  61   VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR  111

6) VC0395_A1070 in NC_009457


> AF220606|2|G1|6851391|AAF29541.1|Vibrio_cholerae_86015|-|625..960|rstR|-|RstR
Length=111

 Score =  178 bits (658),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%), Gaps = 0/111 (0%)

Query  1    MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL  60
            MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL
Sbjct  1    MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL  60

Query  61   VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR  111
            VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR
Sbjct  61   VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR  111

7) VCD_000757 in NC_012667


> AF220606|2|G1|6851391|AAF29541.1|Vibrio_cholerae_86015|-|625..960|rstR|-|RstR
Length=111

 Score =  177 bits (657),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%), Gaps = 0/111 (0%)

Query  4    MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL  63
            MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL
Sbjct  1    MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL  60

Query  64   VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR  114
            VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR
Sbjct  61   VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR  111

8) rstR in NC_006841


> AF220606|2|G1|6851391|AAF29541.1|Vibrio_cholerae_86015|-|625..960|rstR|-|RstR
Length=111

 Score = 93.9 bits (337),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 48/108 (45%), Positives = 84/108 (78%), Gaps = 0/108 (0%)

Query  1    MIKERIKELRSSRNLTQEDVANAMKIAKSTYIKYEKGTQSPQLETIEVMAKFYGVDISEF  60
            M+  +I++LR  R+L QE+VAN++ ++K+TY+ YEKGTQSP+LET+E +AKFYGV I+E+
Sbjct  1    MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL  60

Query  61   FDEKKPDLDLQLMSKLELINQLEKDEKESIILMIEGLIFRRQNINLSK  108
              +   ++D +L SK+ +I+ L+  EKES+++++E+L+ R ++ ++ K
Sbjct  61   VSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQK  108