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Homologs of hrpD gene of AF069651

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpD
( YP_273535.1 )

type III secretion component protein HrpD

NC_005773
(Pseudomonas syringae 1448A)

5e-73

2) Psyr_1196
( YP_234288.1 )

type III secretion protein HrpD

NC_007005
(Pseudomonas syringae B728a)

9e-64

3) hrpD
( NP_791212.1 )

type III secretion protein HrpD

NC_004578
(Pseudomonas syringae DC3000)

3e-59

4) Pmen_0027
( YP_001185534.1 )

hypothetical protein

NC_009439
(Pseudomonas mendocina ymp)

5e-36

• Sequence Alignments

1) hrpD in NC_005773


> AF069651|2|G2|3603316|AAC35802.1|Pseudomonas_syringae_Race_4|+|833..1360|hrpD|-|HrpD
Length=175

 Score =  266 bits (995),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 171/175 (98%), Positives = 174/175 (99%), Gaps = 0/175 (0%)

Query  1    MELIAEDHWVQWWCNPWQFAHPDWQSRFALNCGLTLSDCDGLIASRHSVFLQSVGIEPDQ  60
            MELIAEDHWVQWWCNPWQ+AHPDWQSRFALNCGLT+SDCDGLIASRHSVFLQSVGIEPDQ
Sbjct  1    MELIAEDHWVQWWCNPWQLAHPDWQSRFALNCGLTFSDCDGLIASRHSVFLQSVGIEPDQ  60

Query  61   PPMPAEPVLRWLALTPLQRERALDLARRICFCRNESDGADGQWCWALTKALRPGVWLELA  120
            PPMPAEPVLRWLALTPLQR+RALDLARRICF RNESDGADGQWCWALTKALRPGVWLELA
Sbjct  61   PPMPAEPVLRWLALTPLQRQRALDLARRICFSRNESDGADGQWCWALTKALRPGVWLELA  120

Query  121  NEDPRLLLGAWLGPEYWSRLRLAWAPDELPDSPCEAPENKLQTLWQAILWRVTAV  175
            NEDPRLLLGAWLGPEYWSRLRLAWAPDELPDSPCEAPENKLQTLWQAILWRVTAV
Sbjct  121  NEDPRLLLGAWLGPEYWSRLRLAWAPDELPDSPCEAPENKLQTLWQAILWRVTAV  175

2) Psyr_1196 in NC_007005


> AF069651|2|G2|3603316|AAC35802.1|Pseudomonas_syringae_Race_4|+|833..1360|hrpD|-|HrpD
Length=175

 Score =  235 bits (877),  Expect = 9e-64, Method: Compositional matrix adjust.
 Identities = 142/175 (82%), Positives = 157/175 (90%), Gaps = 0/175 (0%)

Query  1    MDLTAEDYWTQWWCNPWPWAHPGWQSRFAERCGLTVSDCEALMVSRHGVFLQSVGIMPSQ  60
            M+L AED W QWWCNPW  AHP+WQSRFA  CGLT SDC++L+ SRH+VFLQSVGI P Q
Sbjct  1    MELIAEDHWVQWWCNPWQLAHPDWQSRFALNCGLTFSDCDGLIASRHSVFLQSVGIEPDQ  60

Query  61   PPMPAEPVLNWLALTPAQRDQALDLAQRICFSRNESDGDDGQWCWALTKALRPGVWLELE  120
            PPMPAEPVL WLALTP QR++ALDLA+RICFSRNESDG DGQWCWALTKALRPGVWLEL 
Sbjct  61   PPMPAEPVLRWLALTPLQRQRALDLARRICFSRNESDGADGQWCWALTKALRPGVWLELA  120

Query  121  HEDARLLLGAWLGPEYWSRLRLAWAPDEVAERPCAAPENKLQTLWQAVLWRVTAA  175
            +ED+RLLLGAWLGPEYWSRLRLAWAPDE+++ PC APENKLQTLWQA+LWRVTA 
Sbjct  121  NEDPRLLLGAWLGPEYWSRLRLAWAPDELPDSPCEAPENKLQTLWQAILWRVTAV  175

3) hrpD in NC_004578


> AF069651|2|G2|3603316|AAC35802.1|Pseudomonas_syringae_Race_4|+|833..1360|hrpD|-|HrpD
Length=175

 Score =  220 bits (821),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 130/175 (75%), Positives = 156/175 (90%), Gaps = 0/175 (0%)

Query  2    MSLSAEDHWIHWWCNPWQWAHSEWHDRFANARGLSVSDCDALMASRHGVFLQSLGIDPAQ  61
            M L AEDHW++WWCNPWQ AH++W+ RFA   GL+ SDCD+L+ASRH+VFLQS+GI+P Q
Sbjct  1    MELIAEDHWVQWWCNPWQLAHPDWQSRFALNCGLTFSDCDGLIASRHSVFLQSVGIEPDQ  60

Query  62   PPAPAEPVLRWLALTPSQREQALSLAQCICFSRNESDGPDGQWCWGLTKALRPGVWLEFE  121
            PP PAEPVLRWLALTP QR++AL LA+ ICFSRNESDG+DGQWCW+LTKALRPGVWLE+ 
Sbjct  61   PPMPAEPVLRWLALTPLQRQRALDLARRICFSRNESDGADGQWCWALTKALRPGVWLELA  120

Query  122  HEDARLLLGAWLGPQYWSRLCLEWPPNEVPDTPGKAPENKLQALWQAIMWRVTAA  176
            +ED+RLLLGAWLGP+YWSRL L W+P+E+PD+P  APENKLQ+LWQAI+WRVTA 
Sbjct  121  NEDPRLLLGAWLGPEYWSRLRLAWAPDELPDSPCEAPENKLQTLWQAILWRVTAV  175

4) Pmen_0027 in NC_009439


> AF069651|2|G2|3603316|AAC35802.1|Pseudomonas_syringae_Race_4|+|833..1360|hrpD|-|HrpD
Length=175

 Score =  143 bits (526),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 83/173 (48%), Positives = 120/173 (70%), Gaps = 7/173 (4%)

Query  4    AAERWVRWWCEAWHFAHPGWRRSSPVL--AAAADCS---HSRHAALAQSLGIGATQPPPP  58
            A ++WV+WWC++W++AHP+W+   ++    + +DC     SRH+ + QS+GI + QPP P
Sbjct  5    AEDHWVQWWCNPWQLAHPDWQSRFALNCGLTFSDCDGLIASRHSVFLQSVGIEPDQPPMP  64

Query  59   HEGVLQWLALNERQRQHALALAQHICSAKAPCQALPADADWCRSLGKALRPGLWLTAEAT  118
             E VL+WLAL   QRQ+AL LA++IC ++   ++  AD++WC++L KALRPG+WL     
Sbjct  65   AEPVLRWLALTPLQRQRALDLARRICFSRNESDG--ADGQWCWALTKALRPGVWLELANE  122

Query  119  DPRLLLGAWAGPACWERLRLQWAPGSLEELPPDLPARRLATLWAAVLWRTSQM  171
            DPRLLLGAW GP  W RLRL WAP+ L + P + P  +L TLW A+LWR + +
Sbjct  123  DPRLLLGAWLGPEYWSRLRLAWAPDELPDSPCEAPENKLQTLWQAILWRVTAV  175