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Homologs of SAR0434 gene of NC_002952_P2

30

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SAR0434
( YP_039885.1 )

restriction and modification system specificity protein

NC_002952
(Staphylococcus aureus MRSA252)

6e-164

100

2) HMPREF0772_10085
( YP_005746167.1 )

EcoA family type I restriction-modification system

NC_017342
(Staphylococcus aureus TCH60)

6e-164

100

3) SAAG_00896
( YP_008448406.1 )

type I restriction modification DNA specificity domain-containing protein

NC_022113
(Staphylococcus aureus 55/2053)

8e-164

99

4) CA347_431
( YP_008127314.1 )

type I restriction modification DNA specificity domain protein

NC_021554
(Staphylococcus aureus CA-347)

9e-101

63

5) SAI6T6_1003130
( YP_007582923.1 )

Type I restriction modification DNA specificity domain protein

NC_020536
(Staphylococcus aureus ST228)

5e-99

69

6) SAI5S5_1003120
( YP_007620637.1 )

Type I restriction modification DNA specificity domain protein

NC_020566
(Staphylococcus aureus ST228)

5e-99

69

7) SAI8T7_1003130
( YP_007622624.1 )

Type I restriction modification DNA specificity domain protein

NC_020568
(Staphylococcus aureus ST228)

5e-99

69

8) SAI1T1_2003130
( YP_007576936.1 )

Type I restriction modification DNA specificity domain protein

NC_020529
(Staphylococcus aureus ST228 (isolate=10388))

5e-99

69

9) SAI2T2_1003130
( YP_007618651.1 )

Type I restriction modification DNA specificity domain protein

NC_020564
(Staphylococcus aureus ST228 (isolate=10497))

5e-99

69

10) SAI3T3_1003130
( YP_007578944.1 )

Type I restriction modification DNA specificity domain protein

NC_020532
(Staphylococcus aureus ST228 (isolate=15532))

5e-99

69

11) SAI4T8_1003130
( YP_007580908.1 )

Type I restriction modification DNA specificity domain protein

NC_020533
(Staphylococcus aureus ST228 (isolate=16035))

5e-99

69

12) SAI7S6_1003130
( YP_007584887.1 )

Type I restriction modification DNA specificity domain protein

NC_020537
(Staphylococcus aureus ST228 (isolate=18412))

5e-99

69

13) hsdS
( YP_005741157.1 )

Type I restriction-modification system, specificity subunit S

NC_017340
(Staphylococcus aureus 04-02981)

1e-98

66

14) SABB_05408
( YP_008167595.1 )

Type-1 restriction enzyme S specificity protein

NC_021670
(Staphylococcus aureus Bmb9393)

1e-98

66

15) SACOL0477
( YP_185367.1 )

type I restriction-modification system S subunit

NC_002951
(Staphylococcus aureus COL)

1e-98

66

16) ECTR2_367
( YP_005749120.1 )

type I restriction modification DNA specificity domain protein

NC_017343
(Staphylococcus aureus ECT-R 2)

1e-98

66

17) hsdS1
( YP_003281323.1 )

type I restriction-modification system S subunit

NC_013450
(Staphylococcus aureus ED98)

1e-98

66

18) SAUSA300_0406
( YP_493120.1 )

putative restriction/modification system specificity protein

NC_007793
(Staphylococcus aureus FPR3757)

1e-98

66

19) SaurJH1_0467
( YP_001315613.1 )

restriction modification system DNA specificity subunit

NC_009632
(Staphylococcus aureus JH1)

1e-98

66

20) SaurJH9_0455
( YP_001245836.1 )

restriction modification system DNA specificity subunit

NC_009487
(Staphylococcus aureus JH9)

1e-98

66

21) hsdS
( YP_005743813.1 )

restriction endonuclease S subunit

NC_017341
(Staphylococcus aureus JKD6008)

1e-98

66

22) hsdS
( YP_001441020.1 )

restriction modification system specificity subunit

NC_009782
(Staphylococcus aureus Mu3)

1e-98

66

23) hsdS
( NP_370956.1 )

restriction modification system specificity subunit

NC_002758
(Staphylococcus aureus Mu50)

1e-98

66

24) hsdS
( NP_373643.1 )

restriction modification system specificity subunit

NC_002745
(Staphylococcus aureus N315)

1e-98

66

25) SAOUHSC_00398
( YP_498985.1 )

restriction modification system specificity subunit

NC_007795
(Staphylococcus aureus NCTC 8325)

1e-98

66

26) hsdS
( YP_001331433.1 )

type I restriction modification system, site specificity determination subunit

NC_009641
(Staphylococcus aureus Newman)

1e-98

66

27) SAT0131_00471
( YP_005751730.1 )

Restriction modification system DNA specificity domain protein

NC_017347
(Staphylococcus aureus T0131)

1e-98

66

28) hsdS1
( YP_001574340.1 )

type I site-specific deoxyribonuclease specificity subunit

NC_010079
(Staphylococcus aureus TCH1516)

1e-98

66

29) SATW20_05090
( YP_005730518.1 )

type I restriction-modification system specificity protein

NC_017331
(Staphylococcus aureus TW20)

1e-98

66

30) SAVC_01790
( YP_005289958.1 )

type I restriction-modification system subunit S

NC_016912
(Staphylococcus aureus VC40)

1e-98

66

• Sequence Alignments

1) SAR0434 in NC_002952


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  570 bits (2152),  Expect = 6e-164, Method: Compositional matrix adjust.
 Identities = 410/410 (100%), Positives = 410/410 (100%), Gaps = 0/410 (0%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60
            MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  61   LNTNNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLR  120
            LNTNNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLR
Sbjct  61   LNTNNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLR  120

Query  121  GRPKSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQR  180
            GRPKSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQR
Sbjct  121  GRPKSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQR  180

Query  181  KIGDFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDENSEDYPHWENSKIEKY  240
            KIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENSEDYPHWENSKIEKY
Sbjct  181  KIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENSEDYPHWENSKIEKY  240

Query  241  LKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIAYNSMRMWQGA  300
            LKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGA
Sbjct  241  LKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGA  300

Query  301  SGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQL  360
            SGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQL
Sbjct  301  SGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQL  360

Query  361  KNINIDIPVLEEQEKIGDFFKKMDiliskqkikieilekekqsFLQKMFL  410
            KNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEKQSFLQKMFL
Sbjct  361  KNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEKQSFLQKMFL  410

2) HMPREF0772_10085 in NC_017342


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  570 bits (2152),  Expect = 6e-164, Method: Compositional matrix adjust.
 Identities = 410/410 (100%), Positives = 410/410 (100%), Gaps = 0/410 (0%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60
            MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  61   LNTNNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLR  120
            LNTNNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLR
Sbjct  61   LNTNNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLR  120

Query  121  GRPKSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQR  180
            GRPKSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQR
Sbjct  121  GRPKSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQR  180

Query  181  KIGDFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDENSEDYPHWENSKIEKY  240
            KIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENSEDYPHWENSKIEKY
Sbjct  181  KIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENSEDYPHWENSKIEKY  240

Query  241  LKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIAYNSMRMWQGA  300
            LKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGA
Sbjct  241  LKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGA  300

Query  301  SGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQL  360
            SGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQL
Sbjct  301  SGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQL  360

Query  361  KNINIDIPVLEEQEKIGDFFKKMDiliskqkikieilekekqsFLQKMFL  410
            KNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEKQSFLQKMFL
Sbjct  361  KNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEKQSFLQKMFL  410

3) SAAG_00896 in NC_022113


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  569 bits (2150),  Expect = 8e-164, Method: Compositional matrix adjust.
 Identities = 409/410 (99%), Positives = 410/410 (100%), Gaps = 0/410 (0%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60
            MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  61   LNTNNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLR  120
            LNTNNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLR
Sbjct  61   LNTNNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLR  120

Query  121  GRPKSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQR  180
            GRPKSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQR
Sbjct  121  GRPKSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQR  180

Query  181  KIGDFFNKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDENSEDYPHWENSKIEKY  240
            KIGDFF+KLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENSEDYPHWENSKIEKY
Sbjct  181  KIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENSEDYPHWENSKIEKY  240

Query  241  LKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIAYNSMRMWQGA  300
            LKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGA
Sbjct  241  LKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGA  300

Query  301  SGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQL  360
            SGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQL
Sbjct  301  SGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQL  360

Query  361  KNINIDIPVLEEQEKIGDFFKKMDiliskqkikieilekekqsFLQKMFL  410
            KNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEKQSFLQKMFL
Sbjct  361  KNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEKQSFLQKMFL  410

4) CA347_431 in NC_021554


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  360 bits (1353),  Expect = 9e-101, Method: Compositional matrix adjust.
 Identities = 265/423 (63%), Positives = 328/423 (78%), Gaps = 17/423 (4%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60
            MSNTQ KNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  61   INTNNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLR  120
            +NTNNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLR
Sbjct  61   LNTNNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLR  120

Query  121  GRPKSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGTAINRMKVIYPVSAKEQK  180
            GRPKSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSG+AIN+MKVIYPVSAKEQ+
Sbjct  121  GRPKSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQR  180

Query  181  KIGDFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDENGNDYPNWRTIELKNI  240
            KIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEN++DYP+W    + + 
Sbjct  181  KIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENSEDYPHWENSKIEKY  240

Query  241  LENIVDNRGKTPDNAPSEKYPLLEVNALGYYRPAYIKVSKFVSENTYNNWFREHLKENDI  300
            L +  +  +K    + + +  ++  + L+       K +     + Y+      ++ NDI
Sbjct  241  LKERNERSDKGQMLSVTINSGIIKFSELD------RKDNSSKDKSNYKV-----VRKNDI  289

Query  301  LFSTVGNTGIVSLMDNYKAVIAQNIVGLRVNNNNLPSFIYYMLSYKGNQK----KIKRIQ  356
             ++++      S   NY+++++     L   +N  + FI Y   +K ++     KI+   
Sbjct  290  AYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYK--FKTHRMIHKFKINSQG  347

Query  357  MGAVQPSVKVSQFKFIKYLVPIKDEQEKVAKLLIEIDKLVNKQLIKIELLQQRKKALLKS  416
            + +   ++K  Q+K I+  +P+ +EQEK++ ++  +D L++KQ IKIE+L++ K+++L+ 
Sbjct  348  LTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEKQSFLQK  407

Query  417  MFI  419
            MF+
Sbjct  408  MFL  410

5) SAI1T1_2003130 in NC_020529


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  354 bits (1331),  Expect = 5e-99, Method: Compositional matrix adjust.
 Identities = 277/407 (69%), Positives = 325/407 (80%), Gaps = 13/407 (3%)

Query  1    MPELRFPGFEGEWEEKKLGNLTT-KIGSGKTPKGGSENYTNKGIPFLRSQNIRNGK-LNL  58
            +PELRFPGFEGEWEEKK+G+L   K G  K     + +Y   G +++  +++ N + LN 
Sbjct  9    VPELRFPGFEGEWEEKKVGELLEFKNGLNK-----GKEYFGSGSSIVNFKDVFNNRSLNT  63

Query  59   NDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCII---RL  115
            N+L    +    E+KN     GDV++  T+  IG  +  S++  +++      ++   R 
Sbjct  64   NNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLRGRP  123

Query  116  KK--EYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNF-KEIANLKIFTPTIFEEQQKIG  172
            K   +   N F +Y++  ++ RK  +++S+ +  +L     I ++K++ P    EQ+KIG
Sbjct  124  KSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQRKIG  183

Query  173  QFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKE  232
            +FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEN+EDYP+WENSKIEKYLKE
Sbjct  184  DFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENSEDYPHWENSKIEKYLKE  243

Query  233  RNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIAYNSMRMWQGASGK  292
            RNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASG+
Sbjct  244  RNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASGR  303

Query  293  SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI  352
            SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI
Sbjct  304  SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI  363

Query  353  NIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL  399
            NIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEKQSFLQKMFL
Sbjct  364  NIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEKQSFLQKMFL  410

6) SAI2T2_1003130 in NC_020564


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  354 bits (1331),  Expect = 5e-99, Method: Compositional matrix adjust.
 Identities = 277/407 (69%), Positives = 325/407 (80%), Gaps = 13/407 (3%)

Query  1    MPELRFPGFEGEWEEKKLGNLTT-KIGSGKTPKGGSENYTNKGIPFLRSQNIRNGK-LNL  58
            +PELRFPGFEGEWEEKK+G+L   K G  K     + +Y   G +++  +++ N + LN 
Sbjct  9    VPELRFPGFEGEWEEKKVGELLEFKNGLNK-----GKEYFGSGSSIVNFKDVFNNRSLNT  63

Query  59   NDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCII---RL  115
            N+L    +    E+KN     GDV++  T+  IG  +  S++  +++      ++   R 
Sbjct  64   NNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLRGRP  123

Query  116  KK--EYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNF-KEIANLKIFTPTIFEEQQKIG  172
            K   +   N F +Y++  ++ RK  +++S+ +  +L     I ++K++ P    EQ+KIG
Sbjct  124  KSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQRKIG  183

Query  173  QFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKE  232
            +FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEN+EDYP+WENSKIEKYLKE
Sbjct  184  DFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENSEDYPHWENSKIEKYLKE  243

Query  233  RNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIAYNSMRMWQGASGK  292
            RNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASG+
Sbjct  244  RNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASGR  303

Query  293  SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI  352
            SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI
Sbjct  304  SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI  363

Query  353  NIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL  399
            NIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEKQSFLQKMFL
Sbjct  364  NIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEKQSFLQKMFL  410

7) SAI3T3_1003130 in NC_020532


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  354 bits (1331),  Expect = 5e-99, Method: Compositional matrix adjust.
 Identities = 277/407 (69%), Positives = 325/407 (80%), Gaps = 13/407 (3%)

Query  1    MPELRFPGFEGEWEEKKLGNLTT-KIGSGKTPKGGSENYTNKGIPFLRSQNIRNGK-LNL  58
            +PELRFPGFEGEWEEKK+G+L   K G  K     + +Y   G +++  +++ N + LN 
Sbjct  9    VPELRFPGFEGEWEEKKVGELLEFKNGLNK-----GKEYFGSGSSIVNFKDVFNNRSLNT  63

Query  59   NDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCII---RL  115
            N+L    +    E+KN     GDV++  T+  IG  +  S++  +++      ++   R 
Sbjct  64   NNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLRGRP  123

Query  116  KK--EYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNF-KEIANLKIFTPTIFEEQQKIG  172
            K   +   N F +Y++  ++ RK  +++S+ +  +L     I ++K++ P    EQ+KIG
Sbjct  124  KSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQRKIG  183

Query  173  QFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKE  232
            +FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEN+EDYP+WENSKIEKYLKE
Sbjct  184  DFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENSEDYPHWENSKIEKYLKE  243

Query  233  RNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIAYNSMRMWQGASGK  292
            RNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASG+
Sbjct  244  RNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASGR  303

Query  293  SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI  352
            SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI
Sbjct  304  SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI  363

Query  353  NIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL  399
            NIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEKQSFLQKMFL
Sbjct  364  NIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEKQSFLQKMFL  410

8) SAI4T8_1003130 in NC_020533


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  354 bits (1331),  Expect = 5e-99, Method: Compositional matrix adjust.
 Identities = 277/407 (69%), Positives = 325/407 (80%), Gaps = 13/407 (3%)

Query  1    MPELRFPGFEGEWEEKKLGNLTT-KIGSGKTPKGGSENYTNKGIPFLRSQNIRNGK-LNL  58
            +PELRFPGFEGEWEEKK+G+L   K G  K     + +Y   G +++  +++ N + LN 
Sbjct  9    VPELRFPGFEGEWEEKKVGELLEFKNGLNK-----GKEYFGSGSSIVNFKDVFNNRSLNT  63

Query  59   NDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCII---RL  115
            N+L    +    E+KN     GDV++  T+  IG  +  S++  +++      ++   R 
Sbjct  64   NNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLRGRP  123

Query  116  KK--EYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNF-KEIANLKIFTPTIFEEQQKIG  172
            K   +   N F +Y++  ++ RK  +++S+ +  +L     I ++K++ P    EQ+KIG
Sbjct  124  KSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQRKIG  183

Query  173  QFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKE  232
            +FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEN+EDYP+WENSKIEKYLKE
Sbjct  184  DFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENSEDYPHWENSKIEKYLKE  243

Query  233  RNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIAYNSMRMWQGASGK  292
            RNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASG+
Sbjct  244  RNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASGR  303

Query  293  SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI  352
            SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI
Sbjct  304  SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI  363

Query  353  NIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL  399
            NIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEKQSFLQKMFL
Sbjct  364  NIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEKQSFLQKMFL  410

9) SAI7S6_1003130 in NC_020537


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  354 bits (1331),  Expect = 5e-99, Method: Compositional matrix adjust.
 Identities = 277/407 (69%), Positives = 325/407 (80%), Gaps = 13/407 (3%)

Query  1    MPELRFPGFEGEWEEKKLGNLTT-KIGSGKTPKGGSENYTNKGIPFLRSQNIRNGK-LNL  58
            +PELRFPGFEGEWEEKK+G+L   K G  K     + +Y   G +++  +++ N + LN 
Sbjct  9    VPELRFPGFEGEWEEKKVGELLEFKNGLNK-----GKEYFGSGSSIVNFKDVFNNRSLNT  63

Query  59   NDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCII---RL  115
            N+L    +    E+KN     GDV++  T+  IG  +  S++  +++      ++   R 
Sbjct  64   NNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLRGRP  123

Query  116  KK--EYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNF-KEIANLKIFTPTIFEEQQKIG  172
            K   +   N F +Y++  ++ RK  +++S+ +  +L     I ++K++ P    EQ+KIG
Sbjct  124  KSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQRKIG  183

Query  173  QFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKE  232
            +FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEN+EDYP+WENSKIEKYLKE
Sbjct  184  DFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENSEDYPHWENSKIEKYLKE  243

Query  233  RNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIAYNSMRMWQGASGK  292
            RNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASG+
Sbjct  244  RNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASGR  303

Query  293  SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI  352
            SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI
Sbjct  304  SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI  363

Query  353  NIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL  399
            NIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEKQSFLQKMFL
Sbjct  364  NIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEKQSFLQKMFL  410

10) SAI5S5_1003120 in NC_020566


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  354 bits (1331),  Expect = 5e-99, Method: Compositional matrix adjust.
 Identities = 277/407 (69%), Positives = 325/407 (80%), Gaps = 13/407 (3%)

Query  1    MPELRFPGFEGEWEEKKLGNLTT-KIGSGKTPKGGSENYTNKGIPFLRSQNIRNGK-LNL  58
            +PELRFPGFEGEWEEKK+G+L   K G  K     + +Y   G +++  +++ N + LN 
Sbjct  9    VPELRFPGFEGEWEEKKVGELLEFKNGLNK-----GKEYFGSGSSIVNFKDVFNNRSLNT  63

Query  59   NDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCII---RL  115
            N+L    +    E+KN     GDV++  T+  IG  +  S++  +++      ++   R 
Sbjct  64   NNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLRGRP  123

Query  116  KK--EYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNF-KEIANLKIFTPTIFEEQQKIG  172
            K   +   N F +Y++  ++ RK  +++S+ +  +L     I ++K++ P    EQ+KIG
Sbjct  124  KSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQRKIG  183

Query  173  QFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKE  232
            +FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEN+EDYP+WENSKIEKYLKE
Sbjct  184  DFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENSEDYPHWENSKIEKYLKE  243

Query  233  RNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIAYNSMRMWQGASGK  292
            RNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASG+
Sbjct  244  RNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASGR  303

Query  293  SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI  352
            SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI
Sbjct  304  SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI  363

Query  353  NIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL  399
            NIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEKQSFLQKMFL
Sbjct  364  NIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEKQSFLQKMFL  410

11) SAI6T6_1003130 in NC_020536


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  354 bits (1331),  Expect = 5e-99, Method: Compositional matrix adjust.
 Identities = 277/407 (69%), Positives = 325/407 (80%), Gaps = 13/407 (3%)

Query  1    MPELRFPGFEGEWEEKKLGNLTT-KIGSGKTPKGGSENYTNKGIPFLRSQNIRNGK-LNL  58
            +PELRFPGFEGEWEEKK+G+L   K G  K     + +Y   G +++  +++ N + LN 
Sbjct  9    VPELRFPGFEGEWEEKKVGELLEFKNGLNK-----GKEYFGSGSSIVNFKDVFNNRSLNT  63

Query  59   NDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCII---RL  115
            N+L    +    E+KN     GDV++  T+  IG  +  S++  +++      ++   R 
Sbjct  64   NNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLRGRP  123

Query  116  KK--EYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNF-KEIANLKIFTPTIFEEQQKIG  172
            K   +   N F +Y++  ++ RK  +++S+ +  +L     I ++K++ P    EQ+KIG
Sbjct  124  KSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQRKIG  183

Query  173  QFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKE  232
            +FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEN+EDYP+WENSKIEKYLKE
Sbjct  184  DFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENSEDYPHWENSKIEKYLKE  243

Query  233  RNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIAYNSMRMWQGASGK  292
            RNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASG+
Sbjct  244  RNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASGR  303

Query  293  SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI  352
            SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI
Sbjct  304  SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI  363

Query  353  NIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL  399
            NIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEKQSFLQKMFL
Sbjct  364  NIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEKQSFLQKMFL  410

12) SAI8T7_1003130 in NC_020568


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  354 bits (1331),  Expect = 5e-99, Method: Compositional matrix adjust.
 Identities = 277/407 (69%), Positives = 325/407 (80%), Gaps = 13/407 (3%)

Query  1    MPELRFPGFEGEWEEKKLGNLTT-KIGSGKTPKGGSENYTNKGIPFLRSQNIRNGK-LNL  58
            +PELRFPGFEGEWEEKK+G+L   K G  K     + +Y   G +++  +++ N + LN 
Sbjct  9    VPELRFPGFEGEWEEKKVGELLEFKNGLNK-----GKEYFGSGSSIVNFKDVFNNRSLNT  63

Query  59   NDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCII---RL  115
            N+L    +    E+KN     GDV++  T+  IG  +  S++  +++      ++   R 
Sbjct  64   NNLTGKVNVNSKELKNYSVEKGDVFFTRTSEVIGEIGYPSVILNDPENTVFSGFVLRGRP  123

Query  116  KK--EYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNF-KEIANLKIFTPTIFEEQQKIG  172
            K   +   N F +Y++  ++ RK  +++S+ +  +L     I ++K++ P    EQ+KIG
Sbjct  124  KSGIDLINNNFKRYVFFTNSFRKEMITKSSMTTRALTSGSAINKMKVIYPVSAKEQRKIG  183

Query  173  QFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKE  232
            +FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDEN+EDYP+WENSKIEKYLKE
Sbjct  184  DFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENSEDYPHWENSKIEKYLKE  243

Query  233  RNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnYKVVRKNDIAYNSMRMWQGASGK  292
            RNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASG+
Sbjct  244  RNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASGR  303

Query  293  SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI  352
            SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI
Sbjct  304  SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNI  363

Query  353  NIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL  399
            NIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEKQSFLQKMFL
Sbjct  364  NIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEKQSFLQKMFL  410

13) hsdS in NC_017340


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410

14) SABB_05408 in NC_021670


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410

15) SACOL0477 in NC_002951


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410

16) ECTR2_367 in NC_017343


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410

17) hsdS1 in NC_013450


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410

18) SaurJH1_0467 in NC_009632


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410

19) SaurJH9_0455 in NC_009487


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410

20) hsdS in NC_017341


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410

21) hsdS in NC_009782


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410

22) hsdS in NC_002758


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410

23) hsdS in NC_002745


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410

24) SAOUHSC_00398 in NC_007795


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410

25) hsdS in NC_009641


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410

26) SAT0131_00471 in NC_017347


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410

27) SATW20_05090 in NC_017331


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410

28) SAUSA300_0406 in NC_007793


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410

29) hsdS1 in NC_010079


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410

30) SAVC_01790 in NC_016912


> NC_002952_P2|19|G17|49482661|YP_039885.1|Staphylococcus_aureus_subsp._aureus_MRSA252|+|13957..15189|-|SAR0434|restriction 
and modification system specificity protein
Length=410

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 280/429 (66%), Positives = 331/429 (78%), Gaps = 45/429 (10%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKQLGDL---------------TDRVIRKNKNLESKKP  45
            MSNTQ KNVPELRFPGFEGEWEEK++G+L               ++  I + K++ ++++
Sbjct  1    MSNTQTKNVPELRFPGFEGEWEEKKVGELLEFKNGLNKGKEYFGSGSSIVNFKDVFNNRS  60

Query  46   LTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSG  105
            L  +   G ++        V+SK+L NY++ K + F + ++      +G I     Y S 
Sbjct  61   LNTNNLTGKVN--------VNSKELKNYSVEKGDVF-FTRTSE---VIGEIG----YPSV  104

Query  106  VLS----SLYICFSIK--SEMSKDFMEAYFDS----THWYREVSGIAVEGARNHGLLNVS  155
            +L+    +++  F ++  +  + D+++  F      T+ +R    I+  +   ++L + S
Sbjct  105  ILNDPENTVFSGFVLRGRPKSGIDLINNNFKRYVFFTNSFRK-EMITKSSMTTRALTSGS  163

Query  156  VNDFFTILIKYP-SLEEQQKIGKFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRF  214
              +   + + YP S  EQ+KIG FFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF
Sbjct  164  AIN--KMKVIYPVSAKEQRKIGDFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRF  221

Query  215  KDENGEDYPDWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRkdnsskdksnY  274
            KDEN+EDYP+WENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY
Sbjct  222  KDENSEDYPHWENSKIEKYLKERNERSDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNY  281

Query  275  KVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  334
            KVVRKNDIAYNSMRMWQGASG+SNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF
Sbjct  282  KVVRKNDIAYNSMRMWQGASGRSNYNGIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKF  341

Query  335  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEK  394
            KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQK+KIEILEKEK
Sbjct  342  KINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKIKIEILEKEK  401

Query  395  QSFLQKMFL  403
            QSFLQKMFL
Sbjct  402  QSFLQKMFL  410