Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of rci gene of AF000001

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) rci
( NP_458640.1 )

shufflon-specific DNA recombinase

NC_003198
(Salmonella enterica CT18)

7e-168

100

2) STBHUCCB_45020
( YP_005219922.1 )

hypothetical protein

NC_016832
(Salmonella enterica P-stx-12)

7e-168

100

3) rci
( NP_807850.1 )

shufflon-specific DNA recombinase

NC_004631
(Salmonella enterica Ty2)

7e-168

100

4) TY21A_21645
( YP_007928489.1 )

shufflon-specific DNA recombinase

NC_021176
(Salmonella enterica Ty21a)

7e-168

100

5) rci
( YP_002399379.1 )

Shufflon-specific DNA recombinase

NC_011745
(Escherichia coli ED1a)

5e-124

6) rci
( YP_006137020.1 )

IncI1 shufflon-specific DNA recombinase Rci

NC_017642
(Escherichia coli UMNK88)

4e-123

7) SEEH1578_00625
( YP_008248861.1 )

shufflon-specific DNA recombinase

NC_021811
(Salmonella enterica 41578)

5e-123

8) rci
( YP_006203602.1 )

shufflon-specific recombinase

NC_017718
(Salmonella enterica SL1344)

5e-123

9) rci
( YP_006200930.1 )

shufflon-specific DNA reconbinase

NC_017675
(Salmonella enterica ST4/74)

5e-123

10) SeHA_A0108
( YP_002043943.1 )

shufflon-specific DNA recombinase

NC_011081
(Salmonella enterica SL476)

7e-123

11) O3K_25662
( YP_006781730.1 )

shufflon-specific DNA recombinase

NC_018659
(Escherichia coli 2011C-3493)

4e-122

12) CFSAN002069_23600
( YP_008253423.1 )

DNA recombinase

NC_021813
(Salmonella enterica CFSAN002069)

5e-121

13) rci
( YP_048662.1 )

shufflon-specific DNA recombinase

NC_004547
(Pectobacterium atrosepticum SCRI1043)

2e-119

14) Pecwa_0639
( YP_003258070.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

1e-106

15) ECL_00426
( YP_003610941.1 )

shufflon-specific DNA recombinase

NC_014121
(Enterobacter cloacae ATCC 13047)

1e-103

16) SPAB_05367
( YP_001591473.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

7e-102

17) Dd703_3048
( YP_002988643.1 )

integrase family protein

NC_012880
(Dickeya dadantii Ech703)

5e-100

18) PC1_0847
( YP_003016434.1 )

integrase family protein

NC_012917
(Pectobacterium carotovorum PC1)

1e-99

19) Dsui_1127
( YP_005027370.1 )

site-specific recombinase XerD

NC_016616
(Dechlorosoma suillum PS)

3e-82

20) YSA_p00001
( YP_006870569.1 )

integrase family protein

NC_018746
(Pseudomonas putida ND6)

2e-80

21) Msip34_2844
( YP_003052595.1 )

integrase family protein

NC_012970
(Methylovorus glucosetrophus SIP3-4)

5e-80

22) YpsIP31758_B0022
( YP_001393320.1 )

shufflon-specific DNA recombinase

NC_009705
(Yersinia pseudotuberculosis IP 31758)

2e-79

23) Bphyt_7273
( YP_001893487.1 )

integrase family protein

NC_010679
(Burkholderia phytofirmans PsJN)

2e-78

24) rci
( YP_770234.1 )

shufflon-specific DNA recombinase

NC_008380
(Rhizobium leguminosarum 3841)

5e-46

25) METDI4746
( YP_003070189.1 )

integrase

NC_012988
(Methylobacterium extorquens DM4)

1e-44

26) Mext_3783
( YP_001641228.1 )

integrase family protein

NC_010172
(Methylobacterium extorquens PA1)

8e-45

27) Atc_1024
( YP_004748373.1 )

phage integrase

NC_015850
(Acidithiobacillus caldus SM-1)

5e-44

28) LFML04_0301
( YP_006765506.1 )

phage integrase

NC_018649
(Leptospirillum ferriphilum ML-04)

9e-44

29) join
( YP_002479028.1 )

hypothetical protein

NC_011883
(Desulfovibrio desulfuricans ATCC 27774)

3e-43

30) A458_18460
( YP_006459338.1 )

phage integrase

NC_018028
(Pseudomonas stutzeri CCUG 29243)

2e-42

31) AZKH_1638
( YP_007550930.1 )

phage integrase family protein

NC_020516
(Azoarcus sp. KH32C)

4e-42

32) BN115_3831
( YP_006902055.1 )

phage integrase

NC_018829
(Bordetella bronchiseptica MO149)

2e-41

33) bll0870
( NP_767510.1 )

site-specific integrase/recombinase

NC_004463
(Bradyrhizobium japonicum USDA 110)

3e-41

34) rci
( YP_006531957.1 )

integrase family protein

NC_018220
(Pseudomonas putida DOT-T1E)

3e-40

35) rci
( YP_003898371.1 )

site-specific recombinase, phage integrase family

NC_014532
(Halomonas elongata DSM 2581)

3e-40

36) GBP346_A0729
( YP_002895455.1 )

phage integrase family protein

NC_012695
(Burkholderia pseudomallei MSHR346)

5e-40

37) REMIM1_CH04173
( YP_008366811.1 )

phage integrase family protein

NC_021905
(Rhizobium etli Mim1)

6e-40

38) Tmz1t_2794
( YP_002889771.1 )

integrase

NC_011662
(Thauera sp. MZ1T)

7e-40

39) XALc_2647
( YP_003377119.1 )

shufflon-specific DNA recombinase

NC_013722
(Xanthomonas albilineans GPE PC73)

2e-39

40) LFML04_1653
( YP_006766815.1 )

phage integrase

NC_018649
(Leptospirillum ferriphilum ML-04)

9e-39

41) Pnap_3921
( YP_984138.1 )

phage integrase family protein

NC_008781
(Polaromonas naphthalenivorans CJ2)

2e-38

42) PSPTO_3949
( NP_793715.1 )

site-specific recombinase, phage integrase family

NC_004578
(Pseudomonas syringae DC3000)

6e-38

43) PputW619_3971
( YP_001750820.1 )

integrase family protein

NC_010501
(Pseudomonas putida W619)

1e-37

44) B479_20185
( YP_007230872.1 )

integrase family protein

NC_019905
(Pseudomonas putida PC9)

3e-37

45) LFML04_0607
( YP_006765803.1 )

integrase

NC_018649
(Leptospirillum ferriphilum ML-04)

4e-36

46) PSEBR_a5153
( YP_004356610.1 )

phage integrase

NC_015379
(Pseudomonas brassicacearum NFM421)

9e-35

47) D521_1820
( YP_007503121.1 )

Integrase family protein

NC_020417
(beta proteobacterium CB CB)

2e-34

48) XOO0599
( YP_199238.1 )

phage integrase family site specific recombinase

NC_006834
(Xanthomonas oryzae KACC10331)

2e-34

49) Rfer_3039
( YP_524281.1 )

phage integrase

NC_007908
(Rhodoferax ferrireducens T118)

4e-34

50) PSPTO_0535
( NP_790382.1 )

site-specific recombinase, phage integrase family

NC_004578
(Pseudomonas syringae DC3000)

3e-33

51) mma_0494
( YP_001352184.1 )

phage integrase site specific recombinase

NC_009659
(Janthinobacterium sp. Marseille)

1e-30

• Sequence Alignments

1) rci in NC_003198


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  582 bits (2199),  Expect = 7e-168, Method: Compositional matrix adjust.
 Identities = 383/383 (100%), Positives = 383/383 (100%), Gaps = 0/383 (0%)

Query  1    MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIAS  60
            MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIAS
Sbjct  1    MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIAS  60

Query  61   YRDDRLSQVNTRTGRCISGNTVRlelallsslynlasVEWGTCRTNPVEMVRKPKISGGR  120
            YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR
Sbjct  61   YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR  120

Query  121  DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT  180
            DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT
Sbjct  121  DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT  180

Query  181  KNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH  240
            KNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH
Sbjct  181  KNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH  240

Query  241  EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP  300
            EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP
Sbjct  241  EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP  300

Query  301  YPACIESVNEGSDGCCGFRVHLPDFDNlsvsaasresaleaaGVLLLRTLAKAAQRGERV  360
            YPACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERV
Sbjct  301  YPACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERV  360

Query  361  PRPGDLPEGKHERVMIHPLLSAA  383
            PRPGDLPEGKHERVMIHPLLSAA
Sbjct  361  PRPGDLPEGKHERVMIHPLLSAA  383

2) STBHUCCB_45020 in NC_016832


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  582 bits (2199),  Expect = 7e-168, Method: Compositional matrix adjust.
 Identities = 383/383 (100%), Positives = 383/383 (100%), Gaps = 0/383 (0%)

Query  1    MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIAS  60
            MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIAS
Sbjct  1    MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIAS  60

Query  61   YRDDRLSQVNTRTGRCISGNTVRlelallsslynlasVEWGTCRTNPVEMVRKPKISGGR  120
            YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR
Sbjct  61   YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR  120

Query  121  DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT  180
            DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT
Sbjct  121  DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT  180

Query  181  KNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH  240
            KNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH
Sbjct  181  KNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH  240

Query  241  EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP  300
            EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP
Sbjct  241  EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP  300

Query  301  YPACIESVNEGSDGCCGFRVHLPDFDNlsvsaasresaleaaGVLLLRTLAKAAQRGERV  360
            YPACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERV
Sbjct  301  YPACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERV  360

Query  361  PRPGDLPEGKHERVMIHPLLSAA  383
            PRPGDLPEGKHERVMIHPLLSAA
Sbjct  361  PRPGDLPEGKHERVMIHPLLSAA  383

3) TY21A_21645 in NC_021176


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  582 bits (2199),  Expect = 7e-168, Method: Compositional matrix adjust.
 Identities = 383/383 (100%), Positives = 383/383 (100%), Gaps = 0/383 (0%)

Query  1    MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIAS  60
            MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIAS
Sbjct  1    MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIAS  60

Query  61   YRDDRLSQVNTRTGRCISGNTVRlelallsslynlasVEWGTCRTNPVEMVRKPKISGGR  120
            YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR
Sbjct  61   YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR  120

Query  121  DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT  180
            DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT
Sbjct  121  DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT  180

Query  181  KNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH  240
            KNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH
Sbjct  181  KNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH  240

Query  241  EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP  300
            EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP
Sbjct  241  EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP  300

Query  301  YPACIESVNEGSDGCCGFRVHLPDFDNlsvsaasresaleaaGVLLLRTLAKAAQRGERV  360
            YPACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERV
Sbjct  301  YPACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERV  360

Query  361  PRPGDLPEGKHERVMIHPLLSAA  383
            PRPGDLPEGKHERVMIHPLLSAA
Sbjct  361  PRPGDLPEGKHERVMIHPLLSAA  383

4) rci in NC_004631


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  582 bits (2199),  Expect = 7e-168, Method: Compositional matrix adjust.
 Identities = 383/383 (100%), Positives = 383/383 (100%), Gaps = 0/383 (0%)

Query  1    MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIAS  60
            MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIAS
Sbjct  1    MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIAS  60

Query  61   YRDDRLSQVNTRTGRCISGNTVRlelallsslynlasVEWGTCRTNPVEMVRKPKISGGR  120
            YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR
Sbjct  61   YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR  120

Query  121  DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT  180
            DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT
Sbjct  121  DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT  180

Query  181  KNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH  240
            KNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH
Sbjct  181  KNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH  240

Query  241  EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP  300
            EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP
Sbjct  241  EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP  300

Query  301  YPACIESVNEGSDGCCGFRVHLPDFDNlsvsaasresaleaaGVLLLRTLAKAAQRGERV  360
            YPACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERV
Sbjct  301  YPACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERV  360

Query  361  PRPGDLPEGKHERVMIHPLLSAA  383
            PRPGDLPEGKHERVMIHPLLSAA
Sbjct  361  PRPGDLPEGKHERVMIHPLLSAA  383

5) rci in NC_011745


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  437 bits (1645),  Expect = 5e-124, Method: Compositional matrix adjust.
 Identities = 277/379 (74%), Positives = 322/379 (85%), Gaps = 7/379 (1%)

Query  1    MFRKIKIRKMTLNRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPMAERYMDEITTVDIAT  60
            M R  +I+KM+L++ALDKY  TVS+HK+GH QEFYRV VI+RHP+AE+ MDEITTVDIA+
Sbjct  1    MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIAS  60

Query  61   YRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIASVEWGTCRMNPVELVRKPKISSGR  120
            YRD+RL+Q+N RTGR I+GNTVRLELALLSSL+N+ASVEWGTCR NPVE+VRKPKIS+GR
Sbjct  61   YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR  120

Query  121  DRRLTSGEERRLSRYFRDKNQQLYVIFHLALETAMRQGEILTLRWEHLDLQHGVAHLPET  180
            DRRLTS EERRLSRYF+++N  L  IFHLA+ETAMRQGEIL+LRWEH+DLQHGVAHLP T
Sbjct  121  DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT  180

Query  181  KNGLPRDVPLSRKARNYLQILPQQINGNVFSYTSSGFKSAWRTALLDLKIENLHFHDLRH  240
            KNG +RDVPLSRKAR+ LQ +   ++GNVF Y+SSGFKSAWR AL  L+I +LHFHDLRH
Sbjct  181  KNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH  240

Query  241  EAISRFFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDTKRKQTCKIAPYFVP  300
            EAISR+FELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD++R+QT KIAPYFVP
Sbjct  241  EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP  300

Query  301  YPATVGNRNG------LFIVTLHDFD-LETRAETRELAISHASVlllrtlaqaaqrGERV  353
            YPA + + N        F V L DFD L   A +RE A+  A+VLLLRTLA+AAQRGERV
Sbjct  301  YPACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERV  360

Query  354  PTPGELPANIDARVMICPL  372
            P PG+LP   + RVMI PL
Sbjct  361  PRPGDLPEGKHERVMIHPL  379

6) rci in NC_017642


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  434 bits (1633),  Expect = 4e-123, Method: Compositional matrix adjust.
 Identities = 271/380 (72%), Positives = 330/380 (87%), Gaps = 1/380 (0%)

Query  3    SPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATYRD  62
            + RI+KMSLS+ALDKY  TVSVHK+GHQQEFYR  VI+R P+A + MDEITTVDIA+YRD
Sbjct  4    PQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRD  63

Query  63   VRLAEINPRTGKAITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGrdrr  122
             RL+++N RTG+ I+GNTVRLELALLSSL+N+A VEWGTCRTNPVE+VRKPK+S+GRDRR
Sbjct  64   DRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRR  123

Query  123  ltsseerrlsrYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPETKNG  182
            LTS EERRLSRYF+E+N  L  IFHLA+ETAMRQGEIL+LRWEHIDL+HGVAHLP TKNG
Sbjct  124  LTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNG  183

Query  183  HSRDVPLSRRARNFLQMMPVNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHDLRHEAI  242
             SRDVPLSR+AR++LQ M V L GNVF+Y++SGFK+AWR+A QRL I DLHFHDLRHEAI
Sbjct  184  SSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAI  243

Query  243  SRFFELGSLNVMEIAAISGHRSMNMLKRYTHLRAWQLVSKLDARRRQTQKVAAWFVPYPA  302
            SR+FELG+LNVME+AAISGHRS+NMLKRYTHLRA QLVSKLDARRRQTQK+A+ FVPYPA
Sbjct  244  SRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVPYPA  303

Query  303  HITTIDEE-NGQKAHRIEIGDFDNLHVTATTKEEAVHRASEVLLRTLAIAAQKGERVPSP  361
             I +++E  +G  + R+++ DFDNL V+A+++E A++ A+ +LLRTLA AAQ+GERVP P
Sbjct  304  CIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVPRP  363

Query  362  GALPVNDPDYIMICPLNPGS  381
            G LP    + +MI PL +++
Sbjct  364  GDLPEGKHERVMIHPLLSAA  383

7) SEEH1578_00625 in NC_021811


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  433 bits (1632),  Expect = 5e-123, Method: Compositional matrix adjust.
 Identities = 271/380 (72%), Positives = 330/380 (87%), Gaps = 1/380 (0%)

Query  3    SPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATYRD  62
            + RI+KMSLS+ALDKY  TVSVHK+GHQQEFYR  VI+R P+A + MDEITTVDIA+YRD
Sbjct  4    PQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRD  63

Query  63   VRLAEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGrdrr  122
             RL+++N RTG+ I+GNTVRLELALLSSL+N+A VEWGTCRTNPVE+VRKPK+S+GRDRR
Sbjct  64   DRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRR  123

Query  123  ltsseerrlsrYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPETKNG  182
            LTS EERRLSRYF+E+N  L  IFHLA+ETAMRQGEIL+LRWEHIDL+HGVAHLP TKNG
Sbjct  124  LTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNG  183

Query  183  HSRDVPLSRRARNFLQMMPVNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHDLRHEAI  242
             SRDVPLSR+AR++LQ M V L GNVF+Y++SGFK+AWR+A QRL I DLHFHDLRHEAI
Sbjct  184  SSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAI  243

Query  243  SRFFELGSLNVMEIAAISGHRSMNMLKRYTHLRAWQLVSKLDARRRQTQKVAAWFVPYPA  302
            SR+FELG+LNVME+AAISGHRS+NMLKRYTHLRA QLVSKLDARRRQTQK+A+ FVPYPA
Sbjct  244  SRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVPYPA  303

Query  303  HITTIDEE-NGQKAHRIEIGDFDNLHVTATTKEEAVHRASEVLLRTLAIAAQKGERVPSP  361
             I +++E  +G  + R+++ DFDNL V+A+++E A++ A+ +LLRTLA AAQ+GERVP P
Sbjct  304  CIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVPRP  363

Query  362  GALPVNDPDYIMICPLNPGS  381
            G LP    + +MI PL +++
Sbjct  364  GDLPEGKHERVMIHPLLSAA  383

8) rci in NC_017718


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  433 bits (1632),  Expect = 5e-123, Method: Compositional matrix adjust.
 Identities = 271/380 (72%), Positives = 330/380 (87%), Gaps = 1/380 (0%)

Query  3    SPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATYRD  62
            + RI+KMSLS+ALDKY  TVSVHK+GHQQEFYR  VI+R P+A + MDEITTVDIA+YRD
Sbjct  4    PQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRD  63

Query  63   VRLAEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGrdrr  122
             RL+++N RTG+ I+GNTVRLELALLSSL+N+A VEWGTCRTNPVE+VRKPK+S+GRDRR
Sbjct  64   DRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRR  123

Query  123  ltsseerrlsrYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPETKNG  182
            LTS EERRLSRYF+E+N  L  IFHLA+ETAMRQGEIL+LRWEHIDL+HGVAHLP TKNG
Sbjct  124  LTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNG  183

Query  183  HSRDVPLSRRARNFLQMMPVNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHDLRHEAI  242
             SRDVPLSR+AR++LQ M V L GNVF+Y++SGFK+AWR+A QRL I DLHFHDLRHEAI
Sbjct  184  SSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAI  243

Query  243  SRFFELGSLNVMEIAAISGHRSMNMLKRYTHLRAWQLVSKLDARRRQTQKVAAWFVPYPA  302
            SR+FELG+LNVME+AAISGHRS+NMLKRYTHLRA QLVSKLDARRRQTQK+A+ FVPYPA
Sbjct  244  SRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVPYPA  303

Query  303  HITTIDEE-NGQKAHRIEIGDFDNLHVTATTKEEAVHRASEVLLRTLAIAAQKGERVPSP  361
             I +++E  +G  + R+++ DFDNL V+A+++E A++ A+ +LLRTLA AAQ+GERVP P
Sbjct  304  CIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVPRP  363

Query  362  GALPVNDPDYIMICPLNPGS  381
            G LP    + +MI PL +++
Sbjct  364  GDLPEGKHERVMIHPLLSAA  383

9) rci in NC_017675


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  433 bits (1632),  Expect = 5e-123, Method: Compositional matrix adjust.
 Identities = 271/380 (72%), Positives = 330/380 (87%), Gaps = 1/380 (0%)

Query  3    SPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATYRD  62
            + RI+KMSLS+ALDKY  TVSVHK+GHQQEFYR  VI+R P+A + MDEITTVDIA+YRD
Sbjct  4    PQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRD  63

Query  63   VRLAEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGrdrr  122
             RL+++N RTG+ I+GNTVRLELALLSSL+N+A VEWGTCRTNPVE+VRKPK+S+GRDRR
Sbjct  64   DRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRR  123

Query  123  ltsseerrlsrYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPETKNG  182
            LTS EERRLSRYF+E+N  L  IFHLA+ETAMRQGEIL+LRWEHIDL+HGVAHLP TKNG
Sbjct  124  LTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNG  183

Query  183  HSRDVPLSRRARNFLQMMPVNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHDLRHEAI  242
             SRDVPLSR+AR++LQ M V L GNVF+Y++SGFK+AWR+A QRL I DLHFHDLRHEAI
Sbjct  184  SSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAI  243

Query  243  SRFFELGSLNVMEIAAISGHRSMNMLKRYTHLRAWQLVSKLDARRRQTQKVAAWFVPYPA  302
            SR+FELG+LNVME+AAISGHRS+NMLKRYTHLRA QLVSKLDARRRQTQK+A+ FVPYPA
Sbjct  244  SRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVPYPA  303

Query  303  HITTIDEE-NGQKAHRIEIGDFDNLHVTATTKEEAVHRASEVLLRTLAIAAQKGERVPSP  361
             I +++E  +G  + R+++ DFDNL V+A+++E A++ A+ +LLRTLA AAQ+GERVP P
Sbjct  304  CIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVPRP  363

Query  362  GALPVNDPDYIMICPLNPGS  381
            G LP    + +MI PL +++
Sbjct  364  GDLPEGKHERVMIHPLLSAA  383

10) SeHA_A0108 in NC_011081


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  433 bits (1631),  Expect = 7e-123, Method: Compositional matrix adjust.
 Identities = 272/380 (72%), Positives = 330/380 (87%), Gaps = 1/380 (0%)

Query  14   SPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATYRD  73
            + RI+KMSLS+ALDKY  TVSVHK+GHQQEFYR  VI+R P+A + MDEITTVDIA+YRD
Sbjct  4    PQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRD  63

Query  74   VRLAEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGrdrr  133
             RL+++N RTG+ I+GNTVRLELALLSSL+N+A VEWGTCRTNPVE+VRKPK+S+GRDRR
Sbjct  64   DRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRR  123

Query  134  ltsseerrlsrYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPETKNG  193
            LTS EERRLSRYF+E+N  L  IFHLA+ETAMRQGEIL+LRWEHIDL+HGVAHLP TKNG
Sbjct  124  LTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNG  183

Query  194  HSRDVPLSRRARNFLQMMPVNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHDLRHEAI  253
             SRDVPLSR+AR++LQ M V L GNVF+Y++SGFK+AWR+A QRL I DLHFHDLRHEAI
Sbjct  184  SSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAI  243

Query  254  SRFFELGSLNVMEIAAISGHRSMNMLKRYTHLRAWQLVSKLDARRRQTQKVAAWFVPYPA  313
            SR+FELG+LNVME+AAISGHRS+NMLKRYTHLRA QLVSKLDARRRQTQK+A+ FVPYPA
Sbjct  244  SRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVPYPA  303

Query  314  HITTINEE-NGQKAHRIEIGDFDNLHVTATTKEEAVHRASEVLLRTLAIAAQKGERVPSP  372
             I ++NE  +G  + R+++ DFDNL V+A+++E A++ A+ +LLRTLA AAQ+GERVP P
Sbjct  304  CIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVPRP  363

Query  373  GALPVNDPDYIMICPLNPGS  392
            G LP    + +MI PL +++
Sbjct  364  GDLPEGKHERVMIHPLLSAA  383

11) O3K_25662 in NC_018659


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  431 bits (1621),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 270/380 (72%), Positives = 329/380 (87%), Gaps = 1/380 (0%)

Query  3    SPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATYRD  62
            + RI+KMSLS+ALDKY  TVSVHK+GHQQEFYR  VI+R P+A + MDEITTVDIA+YRD
Sbjct  4    PQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRD  63

Query  63   VRLAEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGrdrr  122
             RL+++N RTG+ I+GNTVRLELALLSSL+N+A VEWGTCRTNPVE+VRKPK+S+GRDRR
Sbjct  64   DRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRR  123

Query  123  ltsseerrlsrYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPETKNG  182
            LTS EERRLSRYF+E+N  L  IFHLA+ETAMRQGEIL+LRWEHIDL+HGVAHLP TKNG
Sbjct  124  LTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNG  183

Query  183  HSRDVPLSRRARNFLQMMPVNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHDLRHEAI  242
             SRDVPLSR+AR++LQ M V L GNVF+Y++SGFK+AWR+A QRL I DLHFHDLRHEAI
Sbjct  184  SSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAI  243

Query  243  SRFFELGSLNVMEIAAISGHRSMNMLKRYTHLRAWLLVSKLDARRRQTQKVAAWFVPYPA  302
            SR+FELG+LNVME+AAISGHRS+NMLKRYTHLRA  LVSKLDARRRQTQK+A+ FVPYPA
Sbjct  244  SRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVPYPA  303

Query  303  HITTIDEE-NGQKAHRIEIGDFDNLHVTATTKEEAVHRASEVLLRTLAIAAQKGERVPSP  361
             I +++E  +G  + R+++ DFDNL V+A+++E A++ A+ +LLRTLA AAQ+GERVP P
Sbjct  304  CIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVPRP  363

Query  362  GALPVNDPDYIMICPLNPGS  381
            G LP    + +MI PL +++
Sbjct  364  GDLPEGKHERVMIHPLLSAA  383

12) CFSAN002069_23600 in NC_021813


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  427 bits (1607),  Expect = 5e-121, Method: Compositional matrix adjust.
 Identities = 268/374 (72%), Positives = 325/374 (87%), Gaps = 1/374 (0%)

Query  1    MSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATYRDVRLAEI  60
            MSLS+ALDKY  TVSVHK+GHQQEFYR  VI+R P+A + MDEITTVDIA+YRD RL+++
Sbjct  10   MSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQV  69

Query  61   NPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGrdrrltssee  120
            N RTG+ I+GNTVRLELALLSSL+N+A VEWGTCRTNPVE+VRKPK+S+GRDRRLTS EE
Sbjct  70   NTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRLTSQEE  129

Query  121  rrlsrYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPETKNGHSRDVP  180
            RRLSRYF+E+N  L  IFHLA+ETAMRQGEIL+LRWEHIDL+HGVAHLP TKNG SRDVP
Sbjct  130  RRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDVP  189

Query  181  LSRRARNFLQMMPVNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHDLRHEAISRFFEL  240
            LSR+AR++LQ M V L GNVF+Y++SGFK+AWR+A QRL I DLHFHDLRHEAISR+FEL
Sbjct  190  LSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISRLFEL  249

Query  241  GSLNVMEIAAISGHRSMNMLKRYTHLRAWQLVSKLDARRRQTQKVAAWFVPYPAHITTID  300
            G+LNVME+AAISGHRS+NMLKRYTHLRA QLVSKLDARRRQTQK+A+ FVPYPA I +++
Sbjct  250  GTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVPYPACIESVN  309

Query  301  EE-NGQKAHRIEIGDFDNLHVTATTKEEAVHRASEVLLRTLAIAAQKGERVPSPGALPVN  359
            E  +G  + R+++ DFDNL V+A+++E A++ A+ +LLRTLA AAQ+GERVP PG LP  
Sbjct  310  EGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVPRPGDLPEG  369

Query  360  DPDYIMICPLNPGS  373
              + +MI PL +++
Sbjct  370  KHERVMIHPLLSAA  383

13) rci in NC_004547


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  421 bits (1586),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 244/378 (65%), Positives = 321/378 (85%), Gaps = 8/378 (2%)

Query  3    KRIKKILLSKALDKYFSAVSRHKRGQLQEFYRINVIKRSSLADRYMDEVSSVDIASYRDD  62
            +RIKK+ LSKALDKY+++VS HKRG+ QEFYR+ VI+R +LA++ MDE+++VDIASYRDD
Sbjct  5    QRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDD  64

Query  63   RLAQINPRTKKAISGNTVRLEMALLSALYNLAKVEWGTCTTNPVENVRKPTVSSGRTRRL  122
            RL+Q+N RT + ISGNTVRLE+ALLS+LYNLA VEWGTC TNPVE VRKP +S+GR RRL
Sbjct  65   RLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRL  124

Query  123  ASQEERKIMRYFKGKNPELLAIFRLAVETAMRQGEILSLRWEHIDLRLGIAHLPLTKNGS  182
            +SQEER++ RYF+ +NP L AIF+LA+ETAMRQGEILSLRWEHIDL+ G+AHLP+TKNGS
Sbjct  125  TSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGS  184

Query  183  ARDVPLSSKAREVLKDISELVRHECGSVFSYTSSGFKSAWRIALQSMSIENLHFHDLRHE  242
            +RDVPLS KAR++L++++  +    G+VF Y+SSGFKSAWR+ALQ ++I +LHFHDLRHE
Sbjct  185  SRDVPLSRKARHLLQGMTVALS---GNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHE  241

Query  243  AISRLFELDTLNVMEIAAISGHKSMNMLKRYTHLRATHLVGKLDARKKQAQKLISIFIPY  302
            AISRLFEL+TLNVME+AAISGH+S+NMLKRYTHLRA +LV+KLDAR++Q+QK+ + F+PY
Sbjct  242  AISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVPY  301

Query  303  PADIE-VHDSGRVTMTF----SDFDDLAVTAPTYDDALRVASVELLRFQAIAAKNGERLP  357
            PA IE V++++     F    +DFD+L+V+A++ + AL  A+V LLR  A AA+ GER+P
Sbjct  302  PACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVP  361

Query  358  PPGHISVNMSERILINPL  375
             PG+++    ER++I+PL
Sbjct  362  RPGDLPEGKHERVMIHPL  379

14) Pecwa_0639 in NC_013421


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  379 bits (1425),  Expect = 1e-106, Method: Compositional matrix adjust.
 Identities = 252/378 (67%), Positives = 315/378 (84%), Gaps = 9/378 (2%)

Query  3    KRIKKMLLSQALDKYFATVSRYKRGQLQEFYRINVIKRSPLANRHMDEISSVDIAGYRDD  62
            +RIKKM LS+ALDKY+ATVS  KRG+ QEFYR+ VI+R PLA++ MDEI++VDIA+YRDD
Sbjct  5    QRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDD  64

Query  63   RLAQINPRTKKSISGNTVRlelallsalynlaKVEWGTCTSNPVEHVRKPAVSSGRVRRL  122
            RL+Q+N RT + ISGNTVRLELALLS+LYNLA VEWGTC +NPVE VRKP +S+GR RRL
Sbjct  65   RLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRL  124

Query  123  TSQEERGLTRYFRGKKPELLAIFRLAIETAMRQGEILSLRWENIDLRLGIAHLPLTKNGS  182
            TSQEER L+RYF+ ++P L AIF+LAIETAMRQGEILSLRWE+IDL+ G+AHLP+TKNGS
Sbjct  125  TSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGS  184

Query  183  ARDVPLSSKARLVLKEIGELGRDDTGNVFTYTSSGFKSAWRIALQSLSINDLHFHDLRHE  242
            +RDVPLS KAR +L+ +       +GNVF Y+SSGFKSAWR+ALQ L+I DLHFHDLRHE
Sbjct  185  SRDVPLSRKARHLLQGMTV---ALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHE  241

Query  243  AISRLFELGTLNVMEVAAISGHKSMNMLKRYTHLRATHLVSKLDARKKQAQKLTSIFIPY  302
            AISRLFELGTLNVMEVAAISGH+S+NMLKRYTHLRA +LVSKLDAR++Q+QK+++ F+PY
Sbjct  242  AISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVPY  301

Query  303  PADIYT----YDGTITLK--FSDFDDLEVTAATHDEALRNASVELLRFQAIAAKNGERLp  356
            PA I +     DG   ++  ++DFD+L V+AA+++ AL  A+V LLR  A AA+ GER+P
Sbjct  302  PACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVP  361

Query  357  ppgpvsvnsvnRLLISPL  374
             PG ++    +R++I PL
Sbjct  362  RPGDLPEGKHERVMIHPL  379

15) ECL_00426 in NC_014121


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  369 bits (1387),  Expect = 1e-103, Method: Compositional matrix adjust.
 Identities = 244/379 (65%), Positives = 312/379 (83%), Gaps = 6/379 (1%)

Query  1    MAVRNRIKKMPLAKALDKYFSAVSVHKRGHLQEFYRINVIKRSTLSLKCMDEITSVDIAD  60
            M+  +RIKKM+L+KALDKY+++VSVHKRGH QEFYR+ VI+R  L+ K MDEIT+VDIA 
Sbjct  1    MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIAS  60

Query  61   YRDMRLNTVSDRTGRTVSPNTVRlelallsalynlaRIEWGTCSHNPVEHVRKPAASPGr  120
            YRD RL+ V+ RTGR +S NTVRLELALLS+LYNLA +EWGTC  NPVE VRKP  S GR
Sbjct  61   YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR  120

Query  121  trrltsteerrIARALRQKNPQLLAIFHLALETAMRQGEILSLRWEYVDLHLGIAHLPLT  180
             RRLTS EERR++R ++++NP L AIFHLA+ETAMRQGEILSLRWE +DL+ G+AHLP+T
Sbjct  121  DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT  180

Query  181  KNGTARDVPLSWKARQVLKEFAGPVTGPVFDYTSNGFKSAWRVLLAELEIHDLHFHDLRH  240
            KNG++RDVPLS+KAR++L+  + +++G VF+Y+S+GFKSAWRV L  L+I DLHFHDLRH
Sbjct  181  KNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH  240

Query  241  EAVSRLFELGTLNVMEVAAISGHKSMNMLKRYTHLRASQLVSKLDARRRQAQKLATLFVP  300
            EA+SRLFELGTLNVMEVAAISGH+S+NMLKRYTHLRA QLVSKLDARRRQ+QK+A  FVP
Sbjct  241  EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP  300

Query  301  YPA------EISESGGLFRVQFSDLEHTAITAVNRDEALANAASHLLRIQALAARAGKRL  354
            YPA      E S++   FRV+++D+++ +++A +R+ AL  A+  LLR  A AA+ G R+
Sbjct  301  YPACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERV  360

Query  355  PPPGEIGVREAHRVLINPF  373
            P PG++     +RV+I+P+
Sbjct  361  PRPGDLPEGKHERVMIHPL  379

16) SPAB_05367 in NC_010102


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  363 bits (1364),  Expect = 7e-102, Method: Compositional matrix adjust.
 Identities = 234/365 (65%), Positives = 293/365 (81%), Gaps = 6/365 (1%)

Query  2    ALDKYYGCASVQKRGHLQEFYRINVIKRSALARRYMHEITSVDIAEYRDQRLSEVSGKTG  61
            ALDKYY+  SV+KRGH QEFYR+ VI+R +LA + M+EIT+VDIA YRD+RLS+V+ +TG
Sbjct  15   ALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVNTRTG  74

Query  62   RTNSPASVRlelallsalynlaRIEWGTCTHNPVEHVRKPPASKGRTRRLTSQEERKIGR  121
            R  S  +VRLELALLS+LYNLA +EWGTC  NPVE VRKP  S GR RRLTSQEER+++R
Sbjct  75   RCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRLTSQEERRLSR  134

Query  122  ALAKRNIELAAIFHLALETAMRQGEILSLRWENIDLHIGIAHLPLTKNGSVRDVPLSFKA  181
             +  +N  L AIFHLA+ETAMRQGEILSLRWE+IDL+ G+AHLP+TKNGS RDVPLS KA
Sbjct  135  YFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDVPLSRKA  194

Query  182  RKVLREYSGPLSGPVFSYTSNGFKSAWREVIQALGIVDLHFHDLRHEAISRLFELGTLNV  241
            R +L+  + +LSG VF Y+S+GFKSAWR  +Q L IVDLHFHDLRHEAISRLFELGTLNV
Sbjct  195  RHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISRLFELGTLNV  254

Query  242  MEIAAISGHKSLTMLKRYTHLRATQLVSKLDIRKRQAQKLAAIFVPYPAELESSNN----  297
            ME+AAISGH+SL MLKRYTHLRA QLVSKLD R+RQ+QK+A+ FVPYPA +ES N+    
Sbjct  255  MEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVPYPACIESVNEGSDG  314

Query  298  --GIVLRFPDLEHPSLEAQTKEDVIQKASFELLRIQALAARSGERLPPPGNIKANDPTRV  355
              G+ +++PD+++ S+ A ++E  ++ A+  LLR  A AA+ GER+P PG++      RV
Sbjct  315  CCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVPRPGDLPEGKHERV  374

Query  356  LINPL  360
            +I+PL
Sbjct  375  MIHPL  379

17) Dd703_3048 in NC_012880


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  357 bits (1341),  Expect = 5e-100, Method: Compositional matrix adjust.
 Identities = 240/378 (64%), Positives = 309/378 (82%), Gaps = 9/378 (2%)

Query  3    KRIKNILLSKALDKYFSTVSRHKRGQLQEFYRINVIKRSRLANRNMDEISSIDIAEYRDT  62
            +RIK++ LSKALDKY++TVS HKRG+ QEFYR+ VI+R  LA++ MDEI+++DIA YRD 
Sbjct  5    QRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDD  64

Query  63   RLSEFNARTQKPISANTVRlelallsalynlaKVEWGTCSINPVENIRKPTVSSGrtrrl  122
            RLS+ N+RT + IS+NTVRLELALLS+LYNLA VEWGTC  NPVE +RKP +S+GR RRL
Sbjct  65   RLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRL  124

Query  123  ttheerrltrYFKDKNPELLAIFHIALETGMRQGEILSLRWEYTDLRLGVAHLPLTKNGT  182
            T++EERRL+RYF+++NP L AIFH+A+ET+MRQGEILSLRWE  DL+ GVAHLP+TKNG+
Sbjct  125  TSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGS  184

Query  183  SRDVPLSSKARQILSGLGERPHHENGYIFSYTSSGFKSAWRVALKALAIDDLHFHDLRHE  242
            SRDVPLS KAR++L G+       +G +F Y+SSGFKSAWRVAL+ L I DLHFHDLRHE
Sbjct  185  SRDVPLSRKARHLLQGMTVAL---SGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHE  241

Query  243  AISRFFELGTLNVMEVAAISGHKSMNMLKRYTHLRATHLVSKLDAHKKQAKKLASIFVPY  302
            AISR+FELGTLNVMEVAAISGH+S+NMLKRYTHLRA +LVSKLDA+++Q++K+A+ FVPY
Sbjct  242  AISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVPY  301

Query  303  PADIAADDTTVT------LKFSDLDNLSVTASTHDDALKIASVELLRFQAIAAKNGKRLP  356
            PA I + +          + ++D+DNLSV+A++++ AL  A+V LLR  A AA+ G R+P
Sbjct  302  PACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVP  361

Query  357  PPGAISVNSVDRVLISPL  374
             PG ++    +RV+I PL
Sbjct  362  RPGDLPEGKHERVMIHPL  379

18) PC1_0847 in NC_012917


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  355 bits (1335),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 239/378 (64%), Positives = 313/378 (83%), Gaps = 9/378 (2%)

Query  3    KRIKKILLSKALDKYFSTVSRHKRGQLQEFYRINVIKRSRLANRNMDEISSIDIAEYRDN  62
            +RIKK+ LSKALDKY++TVS HKRG+ QEFYR+ VI+R  LA++ MDEI+++DIA YRD+
Sbjct  5    QRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDD  64

Query  63   RLSEFNARTQKPISANTVRlelallsalynlaKVEWGTCSINPVENVRKPTVSSGrtrrl  122
            RLS+ N+RT + IS+NTVRLELALLS+LYNLA VEWGTC  NPVE VRKP +S+GR RRL
Sbjct  65   RLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRL  124

Query  123  ttqeerqltrYFKDKNPELLAIFQIALETGMRQGEILSLRWEYTDLRLGVAHLPLTKNGT  182
            T+QEER+L+RYF+++NP L AIF++A+ET+MRQGEILSLRWE  DL+ GVAHLP+TKNG+
Sbjct  125  TSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGS  184

Query  183  SRDVPLSSKARQILYGLGERPHHENGYIFSYTSSGFKSAWRVALKALAIDDLHFHDLRHE  242
            SRDVPLS KAR++L G+       +G +F Y+SSGFKSAWRVAL+ L I DLHFHDLRHE
Sbjct  185  SRDVPLSRKARHLLQGMTVAL---SGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHE  241

Query  243  AISRFFELGTLNVMEVAAISGHKSMNMLKRYTHLRAAHLVNKLDAHKKQAKKLASIFIPY  302
            AISR+FELGTLNVMEVAAISGH+S+NMLKRYTHLRA +LV+KLDA+++Q++K+A+ F+PY
Sbjct  242  AISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVPY  301

Query  303  PADID-IDDTTVT-----LKFSDLDNLSVTASTHDDALKIASVELLRFQAIAAKNGKRLP  356
            PA I+ +++ +       + ++D+DNLSV+A++++ AL  A+V LLR  A AA+ G R+P
Sbjct  302  PACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVP  361

Query  357  PPGAISVNSIDRVLISPL  374
             PG ++    +RV+I PL
Sbjct  362  RPGDLPEGKHERVMIHPL  379

19) Dsui_1127 in NC_016616


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  298 bits (1116),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 183/357 (52%), Positives = 260/357 (73%), Gaps = 8/357 (2%)

Query  8    TLREALFMYCERISIHKKGHAQEKYRINLYCRYSIADLPIRNITSVDVATFRDERLAEIN  67
            +L  AL  Y   +S+HK+GH QE YR+ +  R ++A+  + +IT+VD+A++RD+RL+++N
Sbjct  11   SLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVN  70

Query  68   ARTGRALSPATVRLDLALLSDLFRIAKNEWGICNDNPVANVRKPKLPPGRDRRLAPREER  127
            +RTGR +S  TVRL+LALLS L+ +A  EWG C  NPV  VRKPK++ GRDRRL+++EER
Sbjct  71   TRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRLTSQEER  130

Query  128  MIMRHCSQRGAHEMKAIVQLALETAMRQGEILGVCWEHINLKSRIVHLPDTKNGSKRDIP  187
             + R   ++ +  + AI +LA+ETAMRQGEIL++ WEHI+L+  + HLP TKNGS RD+P
Sbjct  131  RLSRYFQEQNP-ALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDVP  189

Query  188  LSMEARDILAAQRVKLSGRVFSYTNNGLKSSWRSMIKRLNIPDLHFHDLRHEAISRLMER  247
            LS  AR++L +  V LSG VF Y+++G+KS+WR  ++RLNI DLHFHDLRHEAISRL E 
Sbjct  190  LSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISRLFEL  249

Query  248  GVFNLMEVAAISGHKSLSMLKRYTHLRAQRLVRKLDAGANKGKAAVLSYLVPYPAFIEPY  307
            G +N+MEVAAISGH+SL+MLKRYTHLRA +LV KLDA   +    + +Y+VPYPA IE+ 
Sbjct  250  GTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDA-RRRQTQKIAPYFVPYPACIESV  308

Query  308  ESQV------KVTFPDFDDLHVAGPCLNSAVQQAQDALLREILVLMRQGRPIPPPNN  358
            +         +V +PDFD+L V+++  +SA++ A   LLR +    ++G  +P P +
Sbjct  309  NEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVPRPGD  365

20) YSA_p00001 in NC_018746


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  292 bits (1093),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 193/378 (52%), Positives = 268/378 (71%), Gaps = 10/378 (2%)

Query  2    RKKNLTLAEGLELYRSKISILKKGYAQESYRIAHILRSPIAAKTMREISSPDIADYRDDR  61
            R K+++L+ +L+ Y + +S+ K+G  QE YR+  I R P+A K M EI++ DIA YRDDR
Sbjct  6    RIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDR  65

Query  62   LKQLNHRTGKSISPATVRLEMSLLSNVFDIGRIEWGTCDANPVANVRKPKSPPGrdrrll  121
            L Q+N RTG+ IS  TVRLE++LLS++++++ +EWGTC +NPV  VRKPK + GRDRRL 
Sbjct  66   LSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRLT  125

Query  122  areerlilrYCHGHQTQELYSIVILALETAMRQGELLKLEWEHINLRNRIAHLPETKNGS  181
            ++EER + RY +  Q   L +I  LA+ETAMRQGE+L L WEHI+L++ +AHLP TKNGS
Sbjct  126  SQEERRLSRYFQE-QNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGS  184

Query  182  KRDVPLSIKARDALIRLGVKSKGRVFSYTSNGFKSAWRIMMIRLGIQDLHFHDLRHEACS  241
             RDVPLS KAR+ L  + V   G VF Y+S+GFKSAWR+ + RL I DLHFHDLRHEA S
Sbjct  185  SRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAIS  244

Query  242  RLFELGTLDVMEIAAISGHKSLAMLKRYTHLKASRLVKKLEGNKHRGQQVVINHLVPYPA  301
            RLFELGTL+VME+AAISGH+SL MLKRYTHL+A +LV KL++ +++ Q++    +VPYPA
Sbjct  245  RLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIA-PYFVPYPA  303

Query  302  ITQQTPTGVV------VRVLDFEGVEGQGLTPEIALQSAQDALLRHLMVALRDKRHVPAP  355
              +    G        V++ DF+ +   + + E AL++A   LLR L  A +   +VP P
Sbjct  304  CIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVPRP  363

Query  356  DQYLEQVDEADIIMLDPL  373
            ++  E  +  + +M++PL
Sbjct  364  GDLPE--GKHERVMIHPL  379

21) Msip34_2844 in NC_012970


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  291 bits (1088),  Expect = 5e-80, Method: Compositional matrix adjust.
 Identities = 184/369 (50%), Positives = 268/369 (73%), Gaps = 10/369 (2%)

Query  9    ALVKYKSSVSILKKGYEQEKFRIEQICRSPLGSLVVRNATSVDIASFRDDRLSQVNQKTK  68
            AL KY ++VS+ K+G +QE +R+  I R PL+  ++ + T+VDIAS+RDDRLSQVN +T 
Sbjct  15   ALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVNTRTG  74

Query  69   KPIAASTVRLELSLLSSFFDICRIEWGLCESNPVTNVRKPKAPPGRDRRLTPREDRQILR  128
            + I+++TVRLEL+LLSS++++  +EWG C +NPV  VRKPK + GRDRRLT++E+R++ R
Sbjct  75   RCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRLTSQEERRLSR  134

Query  129  YAHSHSNQEFYSIVILALETAMRQSEIIKLCWEHLDLKSRIAHLPDTKNGSKRDVPLSAK  188
            Y + + N  + +I  LA+ETAMRQ+EI+ L WEH+DL+  +AHLP TKNGS RDVPLS K
Sbjct  135  YFQEQ-NPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDVPLSRK  193

Query  189  ARDALIRLGVKSKGNVFTYTSSGIKSTWRFMLGKLGIEDLHFHDMRHEAISRFFELGSLD  248
            AR+ L  + V   GNVF Y+SSG+KS+WR  L +L I DLHFHD+RHEAISR+FELG+L+
Sbjct  194  ARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISRLFELGTLN  253

Query  249  MMEIAAISGHKSLSMLKRYTHLKAHKLVRKLDGNKHKGKQVIIDHLIPYPAQILRHEDQV  308
            +ME+AAISGH+SL+MLKRYTHL+A +LV KLD+ +++  Q I   ++PYPA I   ++  
Sbjct  254  VMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDA-RRRQTQKIAPYFVPYPACIESVNEGS  312

Query  309  T------LKILDFEGIVLTGTSSSVIIRAAQDVLLRHLMTLIKESKRIPPPDQYLELVDE  362
                   + + DF+ + ++++S    + AA  +LLR L    + + R+P P++  E  + 
Sbjct  313  DGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVPRPGDLPE--GK  370

Query  363  SQLVMIDPM  371
             + VMI+P+
Sbjct  371  HERVMIHPL  379

22) YpsIP31758_B0022 in NC_009705


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  288 bits (1079),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 194/375 (52%), Positives = 275/375 (74%), Gaps = 10/375 (2%)

Query  4    RVKNIPLSKALDIYLDKISFFKKGGMQEHYRVNTIKKYKLSTLLTNNITTVDIAEYRDER  63
            R+K+++LSKALD Y   +S  K+G  QE YRV  I++  L+  + ++ITTVDIA YRD+R
Sbjct  6    RIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDR  65

Query  64   LKTVKP-NGKTISSNTVRLELALLSHLFKVGIVEWGIARENPVLLVRKPKASEGRNRRVQ  122
            L  V+   G+ IS+NTVRLELALLS L++++ VEWG  R NPV +VRKPK S GR+RR+ 
Sbjct  66   LSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRLT  125

Query  123  PAEHRRLIRYADEHSTGECASIINLAIETAMRQGEILSLQWEYVDLRQGVAHLPETKNGT  182
            + E+RRL RY +E++ +   +I++LAIETAMRQGEILSL+WE +DL++GVAHLP TKNG+
Sbjct  126  SQEERRLSRYFQEQNPAL-HAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGS  184

Query  183  SRDVPLSAKAREILRKCSPKSSGSVFSYTSNGFKSAWRCIIIKSGIKDLHFHDLRHEGVS  242
            SRDVPLS KAR++L+  +   SG+VF Y+S+GFKSAWR  + +  I DLHFHDLRHE++S
Sbjct  185  SRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAIS  244

Query  243  RFVESGRLNIMEVAAISGHKSLSMLKRYTHLKASdltkkldkkktRYESITSVIQPYSAT  302
            R+ E G LN+MEVAAISGH+SL+MLKRYTHL+A +L  KLD ++ + + I++ + PY+A 
Sbjct  245  RLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVPYPAC  304

Query  303  I-TVDMSR-----VKLQFCDFDDLIVDEKNYADAIEKASGSLLKMLCLMLKNGEKIPNPS  356
            I +V+ +       ++++ DFD+L V   +   A+E A+  LL+ L    + GE++P P+
Sbjct  305  IESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVPRPG  364

Query  357  -LPQNGP-FIMIDPL  369
             LP+     +MI+PL
Sbjct  365  DLPEGKHERVMIHPL  379

23) Bphyt_7273 in NC_010679


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  286 bits (1069),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 182/359 (51%), Positives = 253/359 (71%), Gaps = 10/359 (2%)

Query  11   LSIRQALKKYNERISVNKKGCKQEKYRASTICKTFLGKVPISQATTVDIANYRDIRLATI  70
            +S+ +AL KY   +SV+K+G +QE YR   I +  L+   + + TTVDIA+YRD RL+ +
Sbjct  10   MSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQV  69

Query  71   SRTTNRPVSPNTVRLELALLSDLFNIARIEWGVAVDNPVMRVRKPKIPPGRERRLTWGEE  130
            +  T R +S NTVRLELALLS L+N+A +EWG    NPV  VRKPKI+ GR+RRLT  EE
Sbjct  70   NTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRLTSQEE  129

Query  131  RRILRGASQHRNEQFYSVVVLAIETAMRQGEILGLTWENIDLRVRIAHLPATKNGTKRDV  190
            RR+ R   Q++N  + ++  LAIETAMRQGEIL+L WE+IDL+  +AHLP TKNG+ RDV
Sbjct  130  RRLSR-YFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDV  188

Query  191  PLSLRAVDALTRLGVKTEGPVFNYTSAGFKSAWRTLLQRIGMMDLHFHDLRHEAISRLFE  250
            PLS +A + L  + V   G VF+Y+S+GFKSAWR  LQR+ ++DLHFHDLRHEAISRLFE
Sbjct  189  PLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISRLFE  248

Query  251  LGTLDMMEVATISGHKSMQMLKRYTHLKASNLVAKLDGKKVLNKGRRVISQTVVPYPAAV  310
            LGTL++MEVA+ISGH+S++MLKRYTHL+A +LV+KLD+++   +  + I+   VPYPA +
Sbjct  249  LGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARR---RQTQKIAPYFVPYPACI  305

Query  311  SKTED------GFVLQFMDFEHLRLQGrdadevaarardvLLRELVNIMKGSKRAPLPT  363
               ++      GF +++ DF++L + +   +     A  +LLR L +  + + R P P 
Sbjct  306  ESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVPRPG  364

24) rci in NC_008380


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  177 bits (657),  Expect = 5e-46, Method: Compositional matrix adjust.
 Identities = 119/280 (43%), Positives = 191/280 (69%), Gaps = 14/280 (5%)

Query  41   TLGDLLKRYKIEVSPTKRGCVQEIQRIDVLERHEIAHRTLVGLSQPDVASFRDERLSSVA  100
            +L+  L +Y   VS  KRG  QE+ R+ V++RH +A++ +  ++  D+AS+RD+RLS V 
Sbjct  11   SLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVN  70

Query  101  -------PSTAVR-EMAILSHVIEVAMRDWGFPLSRNVVKLVRRPVIRNERKRRLEGDEE  152
                   ++ +VR E+A+LS + ++A  +WG     N V +VR+P I   R RRL ++EE
Sbjct  71   TRTGRCISGNTVRLELALLSSLYNLASVEWG-TCRTNPVEMVRKPKISGGRDRRLTSQEE  129

Query  153  QRLLDGCDGGKIPFMRTLLIVAIETGMRRSEILGLKWTDISHNRRVITLEMTKNGSGREV  212
            +RL       + P +++++ +AIET+MR++EIL+L+W +I  ++ V  L MTKNGS+R+V
Sbjct  130  RRL-SRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDV  188

Query  213  PMTQRAFDALSRWKENAPVEESMVFPIAPGSFEQVWRRLLKRANIVGLRFHDLRHEGVSR  272
            P++++A + L   +  +    + VF  ++++F   WR  L+R NIV+L+FHDLRHE++SR
Sbjct  189  PLSRKARHLL---QGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISR  245

Query  273  LFERG-LNVIEVSSISGHKELRMLKRYTHLSADDLVARLG  311
            LFE G LNV+EV++ISGH+ L MLKRYTHL A +LV++L+
Sbjct  246  LFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285

25) METDI4746 in NC_012988


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  173 bits (639),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 113/281 (41%), Positives = 187/281 (67%), Gaps = 12/281 (4%)

Query  57   LQRITVADLLARYEAEVTTKKRGADRERYKLRVIRSHPLTSLSLAKLTAVAVSRYRDDRL  116
            +++++++  L +Y A V+  KRG ++E Y++RVI+ HPL+   +  +T+V ++ YRDDRL
Sbjct  7    IKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRL  66

Query  117  --------KVVQGATVRRELAILQHCFEVARKEWGTPLPTNPVHGITLPEPSRAREQRLE  168
                    + + G TVR ELA+L   +++A  EWGT   TNPV+ +  P  S +R++RL 
Sbjct  67   SQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTC-RTNPVEMVRKPKISGGRDRRLT  125

Query  169  AEAGQKLHAAIGSVHAWYLRPLMELAIETGMRRGELLSLQWRHVSLGKRTAHLPITKNGH  228
            ++  ++L   +   ++  L+++ +LAIET+MR+GE+LSL+W H+ L    AHLP+TKNG 
Sbjct  126  SQEERRLSRYFQEQNPA-LHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGS  184

Query  229  ARTVALTPKAIEILKALPQT-DARVLPVSGNAVRLAWERLRKRAGLPGLRFHDLRHEAVS  287
            +R V+L+ KA ++L+++  +  + V+  S+++ + AW    +R  + +L+FHDLRHEA+S
Sbjct  185  SRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAIS  244

Query  288  RFFEAG-LSIPEVALMSGHRDTRMLMRYTHLRPEALAEQLA  327
            R+FE G L++ EVA +SGHR   ML RYTHLR+  L  +L 
Sbjct  245  RLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285

26) Mext_3783 in NC_010172


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  173 bits (641),  Expect = 8e-45, Method: Compositional matrix adjust.
 Identities = 115/282 (41%), Positives = 188/282 (67%), Gaps = 12/282 (4%)

Query  56   LQQITVADLLARYEAEVTAKKRGADRERYKLRVIRSHPLASLSLAKLTAVAVSRYRDDRL  115
            +++++++  L +Y A V+  KRG ++E Y++RVI+ HPLA   +  +T+V ++ YRDDRL
Sbjct  7    IKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRL  66

Query  116  --------KVVQGATVRRELAILQHCFEVARKEWGTPLPTNPVHGITLPDPSRARDQRLE  167
                    + + G TVR ELA+L   +++A  EWGT   TNPV+ +  P  S +RD+RL 
Sbjct  67   SQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTC-RTNPVEMVRKPKISGGRDRRLT  125

Query  168  PEAGQKLHAAIGSAHAWYLRPLMELAIETGMRRGELLSLQWCHVSLDKRTAHLPITKNGH  227
            ++  ++L   +   ++  L+++ +LAIET+MR+GE+LSL+W H+ L+   AHLP+TKNG 
Sbjct  126  SQEERRLSRYFQEQNPA-LHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGS  184

Query  228  ARTVALTPRAIEILKALPQT-DGRVLPVSGNAVRLAWERLRKRAGLPSLRFHDLRHEAVS  286
            +R V+L+ +A ++L+++  +  G V+  S+++ + AW    +R  +  L+FHDLRHEA+S
Sbjct  185  SRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAIS  244

Query  287  RFFEAG-LSIPEVALMSGHRDTRMLMRYTHLRPETVADKLAT  327
            R+FE G L++ EVA +SGHR   ML RYTHLR+  +  KL +
Sbjct  245  RLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDA  286

27) Atc_1024 in NC_015850


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  171 bits (631),  Expect = 5e-44, Method: Compositional matrix adjust.
 Identities = 126/276 (46%), Positives = 179/276 (65%), Gaps = 9/276 (3%)

Query  65   TLAECMDRYLLEVVPTKKGGRREVDYVNQWKARPIAHLYMSSVRGKDVAAAMRDMEAEGK  124
            +L+  +D+Y   V   K+G ++E   V   + +P+A+  M  +   D+A+   D  ++ +
Sbjct  11   SLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVN  70

Query  125  -------GANTIRLHLALLSHLFKVARTEWGMEAISNPVESVRKPRLPQGRDRRLVGDEE  177
                   ++NT+RL+LALLS L+++A  EWG    +NPVE VRKP+++ GRDRRL ++EE
Sbjct  71   TRTGRCISGNTVRLELALLSSLYNLASVEWG-TCRTNPVEMVRKPKISGGRDRRLTSQEE  129

Query  178  CRLLAACQSVNPELAAIVRFAIETAMRQGEIMGLAWDAVNLAQRTVTLNETKNGTKRVVP  237
             RL    Q  NP L AI ++AIETAMRQGEI++L W+ ++L +    L  TKNG+ R VP
Sbjct  130  RRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDVP  189

Query  238  LSAAACKVLSELPRRIDGKVWAYGQEGVKYAFPAACRRAGIKDLRFHDLRHEATSRLFEK  297
            LS  A  +L  +   + G+V  Y+  G K A   A +R  I DL+FHDLRHEA SRLFE 
Sbjct  190  LSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISRLFEL  249

Query  298  G-LNLMQVAAITGHKTLQMLKRYTHLRAEDLARMLD  332
            G LN+M+VAAI+GH++L+MLKRYTHLRA +L   LD
Sbjct  250  GTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285

28) LFML04_0301 in NC_018649


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  170 bits (627),  Expect = 9e-44, Method: Compositional matrix adjust.
 Identities = 120/279 (44%), Positives = 181/279 (65%), Gaps = 14/279 (5%)

Query  20   SLRDALSRYLKEITDYKKGKSQETRRIHTWQTHPLGTRPLDQIRRIDLVAYRNERRDQ--  77
            SL  AL +Y   ++  K+G  QE  R++  Q HPL+ + +D+I  +D+ +YR++R  Q  
Sbjct  11   SLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVN  70

Query  78   ---GRS--AHTIRLDLAVLSHLYEIARSEWGFETLSNPVKAIRLPAFPPGRDRRLESGE-  131
               GR   ++T+RL+LA+LS LY++A  EWG    +NPV  +R P ++ GRDRRL S E 
Sbjct  71   TRTGRCISGNTVRLELALLSSLYNLASVEWG-TCRTNPVEMVRKPKISGGRDRRLTSQEE  129

Query  132  --LEKILLHSTPTMSDIVLFAIETAMRRSEILSLTWNRVDLDRRIALLKDTKAGGGRKVP  189
              L + + +  P++  I  +AIETAMR++EILSL W+++DL++ +A L  TK G++R VP
Sbjct  130  RRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDVP  189

Query  190  LSPPALAILKERQKTSSGPNRIFSLSADDVSHRFLDSCRKAGISDLRFHDLRHEATSRLF  249
            LS  A  +L+    T + +  +F  S+ +       + ++  I DL+FHDLRHEA SRLF
Sbjct  190  LSRKARHLLQG--MTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISRLF  247

Query  250  EKG-LSIPQVAAITGHKTLQMLHRYTHLRAEDLAQKLDD  287
            E G L++ +VAAI+GH++L+ML RYTHLRA +L  KLD 
Sbjct  248  ELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDA  286

29) join in NC_011883


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  168 bits (622),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 116/280 (42%), Positives = 184/280 (66%), Gaps = 11/280 (3%)

Query  60   TLNEALERFIAEYVPRYNNPKLETIKARALQRRKIATKFMAAIRSKDIADFMQERAAEG-  118
            +L+ AL+++ A    +    + E  + R +QR+ +A K M  I + DIA + ++R ++  
Sbjct  11   SLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVN  70

Query  119  ------VAGNTIRLDLALISRVFNVAISSWGMESLRNPVSRIPKPKVSSGrtrrlegdee  172
                  ++GNT+RL+LAL+S ++N+A   WG     NPV  + KPK+S+GR RRL ++EE
Sbjct  71   TRTGRCISGNTVRLELALLSSLYNLASVEWG-TCRTNPVEMVRKPKISGGRDRRLTSQEE  129

Query  173  erll---AACSDSLRPIVRFAIETAMRRGEMASLTWQNIDLEKSTAYLPKTKNNEERTVP  229
             RL       + +L++I ++AIETAMR+GE+ SL W++IDL+ + A LP TKN   R VP
Sbjct  130  RRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDVP  189

Query  230  LSPAAVQILKNLEKGESARVFQLSDVSITQAFIKTCQKVGIEGLTFHDLRHEATSRLFER  289
            LS  A ++L+ +  + S+ VF+ S  ++  A   + Q++ I +L FHDLRHEA SRLFE 
Sbjct  190  LSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISRLFEL  249

Query  290  TDLDIMEIKSITGHKTLQMLARYSHLRTYKLVDRLAGARR  329
              L++ME+ +I+GH++L+ML RY+HLR+Y+LV +L + RR
Sbjct  250  GTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRR  289

30) A458_18460 in NC_018028


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  165 bits (611),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 128/294 (44%), Positives = 197/294 (68%), Gaps = 20/294 (6%)

Query  58   RLTLEKALERYLAEVTPSKKPTTRKAEATKAKPLIQH-LGKYSLAALSAEVIASYRDTRL  116
            +++L KAL++Y A V+  K+   ++ E  + + + +H L+   +  +++  IASYRD RL
Sbjct  9    KMSLSKALDKYYATVSVHKR--GHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRL  66

Query  117  NTLN-KHGRPTSNNTVRLELALLSHLFTVAIQEWGLGLTFNPVLNIRKPSPGDGRDRRLS  175
            + +N + GR  S NTVRLELALLS L+ +A  EWG   T NPV  +RKP  ++GRDRRL+
Sbjct  67   SQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRT-NPVEMVRKPKISGGRDRRLT  125

Query  176  PDEERRLLAAVNNHSNPMLGWIVRIALETGMRSSEITGLRCHQVDLKKRVVRLADTKNDS  235
            ++EERRL    +++ NP L  I ++A+ET+MR +EI +LR +++DL+  V +L+ TKN+S
Sbjct  126  SQEERRLSRYFQEQ-NPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGS  184

Query  236  ARTVPLTKLATEAFKAALENPVRPKDCDLVFFGEPGKDEQRRPYAFTKAWGLLKKKLGMP  295
            +R VPL++ A    +  L+    +   ++  ++ +G         F  AW +  ++L + 
Sbjct  185  SRDVPLSRKA----RHLLQGMTVALSGNVFHYSSSG---------FKSAWRVALQRLNIV  231

Query  296  DLRFHDLRHEAVSRLVE-GGLSDQEVSAISGHKSMQMLKRYTHLRAEDLVAKLD  348
            DL+FHDLRHEA+SRL E G L+  EV+AISGH+S++MLKRYTHLRA +LV+KLD
Sbjct  232  DLHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285

31) AZKH_1638 in NC_020516


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  165 bits (608),  Expect = 4e-42, Method: Compositional matrix adjust.
 Identities = 113/280 (41%), Positives = 176/280 (63%), Gaps = 12/280 (4%)

Query  57   KTTFGEVIQRYMKTITPKKRGCTEETIRLTATLRHRMTKLSMANLTPQAMAEYRDDRLRS  116
            K +++  +++Y  T++  KRG  +E  R+    RH ++   M ++T   +A YRDDRL  
Sbjct  9    KMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQ  68

Query  117  -------CKANTVIR-DLAVLSSIINHARREWGIAIQNPVEMIRKPTMPPGRDRVLAQSE  168
                   C +   +R +LA+LSS+ N A  EWG    NPVEM+RKP ++ GRDR L+  E
Sbjct  69   VNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRLTSQE  128

Query  169  ETRLLAELTPTGRRNPLMPSLVIVAIETAMRRGEILAMRWENVDLDRRVVFLPLTKNGQA  228
            E RL   +     +NP + ++  +AIETAMR+GEIL++RWE++DL++ V  LP+TKNG +
Sbjct  129  ERRLSRYFQE---QNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSS  185

Query  229  RYVPLSTRAVEALTNLPRSPDGRVFSINVAAMEANFMKAVRRAGLLDMHFHDLRHTAASR  288
            R VPLS +A + L  +  +  G VF  + ++  +    A++R  ++D+HFHDLRH A SR
Sbjct  186  RDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISR  245

Query  289  M-ATKLPNVIELASVTGHTSIQMLKRYYHPKAEELALKLE  327
            +      NV+E+A+++GH S++MLKRY H +A +L  KL+
Sbjct  246  LFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285

32) Bcen_2661 in NC_008060


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  164 bits (605),  Expect = 7e-42, Method: Compositional matrix adjust.
 Identities = 127/298 (43%), Positives = 192/298 (65%), Gaps = 26/298 (8%)

Query  58   KLTVSAALKRYMEEVSVTKKATTQRSESFSAKHLEAF-FGKYSMAAVSAELVAKYRDERL  116
            K+++S AL +Y   VSV K++  ++ E +  + ++   ++   M  +++  +A YRD+RL
Sbjct  9    KMSLSKALDKYYATVSVHKRG--HQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRL  66

Query  117  A-----AGKS--NNTVRLELAMLGHLFRMAIQEWGIGLTFNPVANVRKPSPGAGRDRRLS  169
            +     +G+    NTVRLELA+L+ L+ +A  EWG   T NPV  VRKP  ++GRDRRL+
Sbjct  67   SQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRT-NPVEMVRKPKISGGRDRRLT  125

Query  170  RDEHQRLFAAADAHSNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDTKNGS  229
             +E++RL    + + NP L  I +LA+ET+MR +EI +L + ++DL++ V  L  TKNGS
Sbjct  126  SQEERRLSRYFQEQ-NPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGS  184

Query  230  SRVVPLTREAAEVLRAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWTGIVRDLGMV  289
            SR VPL+R A    R  L+    ++  ++  ++ +G         F+  W   ++ L +V
Sbjct  185  SRDVPLSRKA----RHLLQGMTVALSGNVFHYSSSG---------FKSAWRVALQRLNIV  231

Query  290  DLHFHDLRHEAVSRLVEAG-LSDQEVASISGHKSMQMLKRYTHLRAEDLVQKLDTLRR  346
            DLHFHDLRHEA+SRL E G L+  EVA+ISGH+S++MLKRYTHLRA +LV KLD+ RR
Sbjct  232  DLHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRR  289

33) Bcen2424_0446 in NC_008542


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  164 bits (605),  Expect = 7e-42, Method: Compositional matrix adjust.
 Identities = 127/298 (43%), Positives = 192/298 (65%), Gaps = 26/298 (8%)

Query  58   KLTVSAALKRYMEEVSVTKKATTQRSESFSAKHLEAF-FGKYSMAAVSAELVAKYRDERL  116
            K+++S AL +Y   VSV K++  ++ E +  + ++   ++   M  +++  +A YRD+RL
Sbjct  9    KMSLSKALDKYYATVSVHKRG--HQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRL  66

Query  117  A-----AGKS--NNTVRLELAMLGHLFRMAIQEWGIGLTFNPVANVRKPSPGAGRDRRLS  169
            +     +G+    NTVRLELA+L+ L+ +A  EWG   T NPV  VRKP  ++GRDRRL+
Sbjct  67   SQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRT-NPVEMVRKPKISGGRDRRLT  125

Query  170  RDEHQRLFAAADAHSNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDTKNGS  229
             +E++RL    + + NP L  I +LA+ET+MR +EI +L + ++DL++ V  L  TKNGS
Sbjct  126  SQEERRLSRYFQEQ-NPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGS  184

Query  230  SRVVPLTREAAEVLRAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWTGIVRDLGMV  289
            SR VPL+R A    R  L+    ++  ++  ++ +G         F+  W   ++ L +V
Sbjct  185  SRDVPLSRKA----RHLLQGMTVALSGNVFHYSSSG---------FKSAWRVALQRLNIV  231

Query  290  DLHFHDLRHEAVSRLVEAG-LSDQEVASISGHKSMQMLKRYTHLRAEDLVQKLDTLRR  346
            DLHFHDLRHEA+SRL E G L+  EVA+ISGH+S++MLKRYTHLRA +LV KLD+ RR
Sbjct  232  DLHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRR  289

34) BN115_3831 in NC_018829


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  162 bits (600),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 124/287 (44%), Positives = 189/287 (66%), Gaps = 18/287 (6%)

Query  57   RTTLGEALGRYLREVVPSKRSPGQEAGRIRRWQVHSLAYRMLASLRGADFARYRDERRAD  116
            + +L+ AL++Y   V   KR+  QE  R+R  Q H+LA +M+  +   D+A YRD+R ++
Sbjct  9    KMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQ  68

Query  117  -----GR--AENTIRLELQLVSHLFETARKEWGMEGLANPLKNIKKPSGSSARDRRLQVG  169
                 GR  + NT+RLEL L+S L++ A  EWG    +NP+  ++KP  S++RDRRL   
Sbjct  69   VNTRTGRCISGNTVRLELALLSSLYNLASVEWG-TCRTNPVEMVRKPKISGGRDRRLTSQ  127

Query  170  EYEALRARLEASTNPYVVVAFDLAIETALRQGKLFDLRWEWVDLSVRVIRIPSLVRQADN  229
            E   L +R     NP +   F+LAIETA+RQG ++ LRWE +DL   V ++P + +++ +
Sbjct  128  EERRL-SRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLP-MTKNGSS  185

Query  230  KGVPAVLPLSRRAQVVLAQLQSRTGCTEGKILNTTPNAVVCTWKRATRALGIEDLRWHDL  289
            ++VP    LSR+A+ +L   Q+ T    G++++ ++++   +W+ A + L I DL+ HDL
Sbjct  186  RDVP----LSRKARHLL---QGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDL  238

Query  290  RHEAASRLFEKG-LNPMEVASITGHKSMQMLKRYTHLRAENLVAKLD  335
            RHEA SRLFE G LN MEVA+I+GH+S++MLKRYTHLRA +LV+KLD
Sbjct  239  RHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285

35) bll0870 in NC_004463


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  161 bits (596),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 132/285 (47%), Positives = 191/285 (68%), Gaps = 21/285 (7%)

Query  58   KTTLGELLSRYANEVTPAKRGAVSEKARINSIVRCPISHRTLAKLTSSDVAGYRDERLKT  117
            K +L+  L +Y   V+  KRG   E  R+  I R P++++ +  +T+ D+A+YRD+RL  
Sbjct  9    KMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQ  68

Query  118  VA-------PATVVR-ELNTISHAIEVATREWGLWvprnpvklvrrppvprgrtrrLKEG  169
            V        ++  VR EL  +S   ++A+ EWG     NPV +VR+P ++ GR RRL   
Sbjct  69   VNTRTGRCISGNTVRLELALLSSLYNLASVEWGT-CRTNPVEMVRKPKISGGRDRRLTSQ  127

Query  170  EEQRLLDACDRGRTPLLKPLIILAIETGMRRGELLDLRWEHIDLKRGVAHLPLTKNGDSR  229
            EE+RL     + + P L +++ LAIET+MR+GE+L LRWEHIDL++GVAHLP+TKNG SR
Sbjct  128  EERRL-SRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSR  186

Query  230  DVPLSCRAVQTLQELRSAGVRHDRVFSMTGNSV----RLAFEHLRVRAGMSDLHFHDLRH  285
            DVPLS +A + LQ +  +    + VF  ++++     R+A+++L +     DLHFHDLRH
Sbjct  187  DVPLSRKARHLLQGM--TVALSGNVFHYSSSGFKSAWRVALQRLNI----VDLHFHDLRH  240

Query  286  EAISRLFEKG-LNIAEVSAISGHRELKMLQRYTHLRAVDLVARLG  329
            EAISRLFE G LN+ EV+AISGHR L+ML+RYTHLRA +LV++L+
Sbjct  241  EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285

36) Rpic_3201 in NC_010682


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  160 bits (589),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 125/294 (43%), Positives = 187/294 (64%), Gaps = 24/294 (8%)

Query  58   KLTVAGALKRYMEEVSVTKKPTTQRSERFTAQHLEAFFGKYSMAAVSADLVAKYRDARLA  117
            K++++ AL +Y   VSV K+   Q   R    + +++  K  M  +++  +A YRD RL+
Sbjct  9    KMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEK-MMDEITTVDIASYRDDRLS  67

Query  118  -----AGKS--NNTVRIELAMLGHLFRTAIQEWSIGLTFNPVANIRKPSPGAGRDRRLSL  170
                 +G+    NTVR+ELA+L+ L+  A  EW+   T NPV  +RKP  ++GRDRRL+ 
Sbjct  68   QVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRT-NPVEMVRKPKISGGRDRRLTS  126

Query  171  DEQARLFAAVSAHSNPMLGWIVSLAVETGMRSSEIATLRRSQVDLNRRVVTLRDTKNGSA  230
            +E+ RL +    + NP L  I  LA+ET+MR +EI +LR+ ++DL++ V  L  TKNGS+
Sbjct  127  QEERRL-SRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSS  185

Query  231  RVVPLTRAAADVLQLALGNPIRPLDSDLVFFGEPGRDGKRRPYVFQKLWASIVRDMGLAD  290
            R VPL+R A ++LQ   G  + +L +++  ++ +G         F+  W   ++ + + D
Sbjct  186  RDVPLSRKARHLLQ---GMTV-ALSGNVFHYSSSG---------FKSAWRVALQRLNIVD  232

Query  291  LHFHDLRHEAVSRLVEAG-LSDQEVAAISGHKSMQMLKRYTHLRAEDLVEKLDA  343
            LHFHDLRHEA+SRL E G L+  EVAAISGH+S++MLKRYTHLRA +LV KLDA
Sbjct  233  LHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDA  286

37) bgla_1g03980 in NC_015381


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  160 bits (589),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 124/298 (42%), Positives = 190/298 (64%), Gaps = 26/298 (8%)

Query  58   KLTVSAALKRYMKEVSATKKATTQRSESFSAKHLEAF-FGKYSMAAVSAELVAKYRDERL  116
            K+++S AL +Y   VS  K++  ++ E +  + ++   ++   M  +++  +A YRD+RL
Sbjct  9    KMSLSKALDKYYATVSVHKRG--HQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRL  66

Query  117  A-----AGKS--NNTVRLELAMLGHLFRMAIQEWGIGLTFNPVANVRKPSPGAGRDRRLS  169
            +     +G+    NTVRLELA+L+ L+ +A  EWG   T NPV  VRKP  ++GRDRRL+
Sbjct  67   SQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRT-NPVEMVRKPKISGGRDRRLT  125

Query  170  RDEQQRLFAAADAHSNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDTKNGS  229
             +E++RL    + + NP L  I +LA+ET+MR +EI +L + ++DL++ V  L  TKNGS
Sbjct  126  SQEERRLSRYFQEQ-NPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGS  184

Query  230  SRMVPLTREAAEVLRAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWAGIVRDLGMA  289
            SR VPL+R A    R  L+    ++  ++  ++ +G         F+  W   ++ L + 
Sbjct  185  SRDVPLSRKA----RHLLQGMTVALSGNVFHYSSSG---------FKSAWRVALQRLNIV  231

Query  290  DLHFHDLRHEAVSRLVEAG-LSDQEVASISGHKSMQMLKRYTHLRAEDLVQRLDSLRR  346
            DLHFHDLRHEA+SRL E G L+  EVA+ISGH+S++MLKRYTHLRA +LV +LD+ RR
Sbjct  232  DLHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRR  289

38) BDL_2281 in NC_021884


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  159 bits (586),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 124/299 (42%), Positives = 189/299 (64%), Gaps = 24/299 (8%)

Query  58   KLTVSAALKRYMEEVSITKKATTQRSERFTSQHLAAFFGKYSMAAVSAELVAKYRDERLA  117
            K+++S AL +Y   VS+ K++  Q   R    +  ++  K  M  +++  +A YRD+RL+
Sbjct  9    KMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEK-MMDEITTVDIASYRDDRLS  67

Query  118  -----AGKS--NNTVRIELAMLGHLFRVAIQEWGIGLTFNPVANIRKPSPGAGRDRRLTP  170
                 +G+    NTVR+ELA+L+ L+ +A  EWG   T NPV  +RKP  ++GRDRRLT+
Sbjct  68   QVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRT-NPVEMVRKPKISGGRDRRLTS  126

Query  171  EEQQRLFAAADAHSNPILGWIVRLAVETGMRSSEITGLHRSQVDLNRRVVTLKDTKNGSV  230
            +E++RL    + + NP L  I +LA+ET+MR +EI +L++ ++DL++ V  L  TKNGS 
Sbjct  127  QEERRLSRYFQEQ-NPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSS  185

Query  231  RLVPLTRVAVEILRSALDNPIRPIDVDLVFFGEPGRDGKRKPYVFQKLWASIVQTAGLAD  290
            R VPL+R A    R  L+    ++  ++  ++ +G         F+  W   +Q   + D
Sbjct  186  RDVPLSRKA----RHLLQGMTVALSGNVFHYSSSG---------FKSAWRVALQRLNIVD  232

Query  291  LHFHDLRHEAVSRLVEAG-LSDQEVASISGHKSMQMLKRYTHLRAEDLVEKLDRLKKQA  348
            LHFHDLRHEA+SRL E G L+  EVA+ISGH+S++MLKRYTHLRA +LV KLD  ++Q+
Sbjct  233  LHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQT  291

39) rci in NC_018220


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  158 bits (584),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 114/278 (42%), Positives = 183/278 (66%), Gaps = 11/278 (3%)

Query  58   RTTLTEALDRYSREVSSTKKGAKQEQTRINKWKKHPFAGKGLAALRSSDFASFRDEEL--  115
            + +L+ ALD+Y   VS  K+G +QE  R+   ++HP+A K +  + + D+AS+RD+ L  
Sbjct  9    KMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQ  68

Query  116  ---KAGKSTA--TVRLDLAIISHLFTVAIKDWGIEGLSNPMMKLRMPKGAKERDRRPKSF  170
               ++G+  +  TVRL+LA++S L+ +A  +WG    +NP+  +R PK +  RDRR  S 
Sbjct  69   VNTRTGRCISGNTVRLELALLSSLYNLASVEWGT-CRTNPVEMVRKPKISGGRDRRLTSQ  127

Query  171  ELAGVIEKAGAIHAEMPAIIQIAVETAMRRSELLGLRRENVKAKHVL--LEDTKNGTRRL  228
            E   +       ++ + AI+++A+ETAMR++E+L+LR+E++  +H +  L  TKNG+ R 
Sbjct  128  EERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRD  187

Query  229  VPLSTKARALIDGLPARLDGKVFSLAPHSVSQYFNRACKAAKVEDLHFHDLRHEGTSRLF  288
            VPLS KAR L++G+   L G+VF  ++ +       A +  ++ DLHFHDLRHE+ SRLF
Sbjct  188  VPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISRLF  247

Query  289  EKG-LSIMEVASITGHKTMSMLKRYTHLCPDALADKLG  325
            E G L++MEVA+I+GH++++MLKRYTHL +  L  KL+
Sbjct  248  ELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285

40) rci in NC_014532


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  158 bits (583),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 121/297 (41%), Positives = 191/297 (65%), Gaps = 24/297 (8%)

Query  58   RMTLEAALKRYLADVTPTKKPSTQKSERHKA---NTLIEHLGKYSLAALTPELIANFRDT  114
            +M+L  AL +Y A V+  K+   Q   R +    + L E +    +  +T   IA++RD 
Sbjct  9    KMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKM----MDEITTVDIASYRDD  64

Query  115  RLNSLGRR-GQPISANTVRLELALLGHLYTVAIQEWGLGLTYNPVQNIRKPSPGEGRDRR  173
            RL+ +  R G+ IS+NTVRLELALL+ LY +A  EWG   T NPV+ +RKP  + GRDRR
Sbjct  65   RLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRT-NPVEMVRKPKISGGRDRR  123

Query  174  LSADEEKRLFAVLRQHSNPMLAWIARIALETGMRSSEILTLTRSQVDVKRRVVRLTDTKN  233
            L+++EE+RL   ++++ NP L  I ++A+ET+MR +EIL+L + ++D+++ V +L  TKN
Sbjct  124  LTSQEERRLSRYFQEQ-NPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKN  182

Query  234  NEARLVPLTQAATEVFKQALNNPVRPFDCDLVFFGEPGKDGKRGPYAYTKLWNQAKKQAG  293
              +R VPL++ A    ++ L+    ++  ++  ++ +G         +   W  A ++  
Sbjct  183  GSSRDVPLSRKA----RHLLQGMTVALSGNVFHYSSSG---------FKSAWRVALQRLN  229

Query  294  LDDFRFHDLRHEAVSRLVEAG-LSDQEVATISGHKSMQMLRRYTHLRAEDLVGKLDN  349
            + D++FHDLRHEA+SRL E G L+  EVA+ISGH+S++ML+RYTHLRA +LV+KLD 
Sbjct  230  IVDLHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDA  286

41) GBP346_A0729 in NC_012695


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  157 bits (581),  Expect = 5e-40, Method: Compositional matrix adjust.
 Identities = 121/295 (42%), Positives = 188/295 (64%), Gaps = 26/295 (8%)

Query  58   KTTVADALDRYEREIVPTKKASTQRREGARIREL-KANFGKYSLAAVTPDLVSRYRDDRL  116
            K +++ ALD+Y   +   K++  +++E  R+R + +  ++   +  +T   ++ YRDDRL
Sbjct  9    KMSLSKALDKYYATVSVHKRG--HQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRL  66

Query  117  A-------RGKANNTVRLELALLGHLFNVAIKEWHIGLIFNPVANIRKPSPGEGRNRRLS  169
            +       R  + NTVRLELALL+ L+N+A  EW      NPV  +RKP  + GR+RRL+
Sbjct  67   SQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRT-NPVEMVRKPKISGGRDRRLT  125

Query  170  ESEQAKLLATVDQHSNPMLGWIVRLAIETGMRQSEILGLRRGQVDLERRVVRLTDTKNNA  229
              E+ +L    +++ NP L  I +LAIET+MRQ+EIL+LR+ ++DL++ V +L  TKN +
Sbjct  126  SQEERRLSRYFQEQ-NPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGS  184

Query  230  ARTVPLTKLAALVLQNALGNPVRPIDTDLVFFGEPGRDGKRRAYQFTKVWNGLKKRTGLI  289
            +R VPL++ A  +LQ   G  V ++  ++  ++ +G         F   W    +R  ++
Sbjct  185  SRDVPLSRKARHLLQ---GMTV-ALSGNVFHYSSSG---------FKSAWRVALQRLNIV  231

Query  290  DFRFHDLRHEAVSRLVEAG-LTDQEVASISGHKSMQMLRRYTHLRAEDLVSKLDA  343
            D++FHDLRHEA+SRL E G L   EVA+ISGH+S++ML+RYTHLRA +LVSKLDA
Sbjct  232  DLHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDA  286

42) REMIM1_CH04173 in NC_021905


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  157 bits (579),  Expect = 6e-40, Method: Compositional matrix adjust.
 Identities = 117/280 (42%), Positives = 188/280 (68%), Gaps = 14/280 (5%)

Query  41   TLGDLLKRYKVEVSPTKRGCVQEIQRIDVLERHEIAHRTLVGLSQPDIASFRDERLSSVA  100
            +L+  L +Y   VS  KRG  QE+ R+ V++RH +A++ +  ++  DIAS+RD+RLS V 
Sbjct  11   SLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVN  70

Query  101  -------PSTAVR-EMAILSHVIEVAMRDWGFPLSRNVVKLVrrpiirnerkrrLEDDEE  152
                   ++ +VR E+A+LS + ++A  +WG     N V +VR+P I   R RRL  +EE
Sbjct  71   TRTGRCISGNTVRLELALLSSLYNLASVEWG-TCRTNPVEMVRKPKISGGRDRRLTSQEE  129

Query  153  QRLLDGCDSGKIAFMRTLLIIAIETGMRRSEILGLKWSDISHNRRVITLEMTKNGTGREV  212
            +RL       + + +++++ +AIET+MR++EIL+L+W +I  ++ V  L MTKNG++R+V
Sbjct  130  RRL-SRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDV  188

Query  213  PMSQRAFDALSWWKENAPVDEAMVFPIAPGSFEQVWRRLLKRAHIAGLRFHDLRHEGVSR  272
            P+S++A + L   +  +    + VF  ++++F   WR  L+R +I +L+FHDLRHE++SR
Sbjct  189  PLSRKARHLL---QGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISR  245

Query  273  LFERG-LNVIEVSSISGHKELRMLKRYTHLSADNLVARLS  311
            LFE G LNV+EV++ISGH+ L MLKRYTHL A +LV++L 
Sbjct  246  LFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285

43) Tmz1t_2794 in NC_011662


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  157 bits (579),  Expect = 7e-40, Method: Compositional matrix adjust.
 Identities = 114/283 (41%), Positives = 180/283 (64%), Gaps = 14/283 (4%)

Query  55   VERTTLADILLRYAEEVTPCKKGAKDEAIRLNALRANKLAKHSLANLSAAAVAKFRDERL  114
            + + +L+  L +Y   V+  K+G ++E  R+  ++ + LA   + ++++  +A +RD+RL
Sbjct  7    IKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRL  66

Query  115  KTVSA-------GTVLR-DLALISSVLNHARREWGFPVENAVQAIRKPRQPQGRERVLSH  166
              V++       G  +R +LAL+SS+ N A  EWG    N+V+ +RKP+ + GR+R L+ 
Sbjct  67   SQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRLTS  126

Query  167  DEEARLLAASAPIGRRSPWLQPIIILALETAMRRGELLALRWEHVSLDKRTALLPDTKNG  226
            +EE RL   S  +  ++P L++I+ LA+ETAMR+GE+L+LRWEH+ L+   A LP TKNG
Sbjct  127  QEERRL---SRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNG  183

Query  227  TRRLVPLSPRAIDTLKHMPRAIDGRVFPISEPALHLRFKLACDRAGIDGLHFHDLRHTAT  286
            + R VPLS +A + L+ M  A+ G VF  S +++    ++A +R  I +LHFHDLRH A 
Sbjct  184  SSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAI  243

Query  287  TRLAEKLTNLA--ELSAVTGHKSLQMLKRYYHPNAEALAEKLA  327
            +RL E L  L   E++A++GH+SL+MLKRY H  A  L  KL 
Sbjct  244  SRLFE-LGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285

44) Rpic12D_2854 in NC_012856


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  156 bits (574),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 123/294 (42%), Positives = 188/294 (64%), Gaps = 24/294 (8%)

Query  58   KLTVAGALRRYMEEVSVTKKPTTQRSERFTAQHLEAFFGKYSMAAVSADLVAKYRDVRLA  117
            K++++ AL +Y   VSV K+   Q   R    + +++  K  M  +++  +A YRD RL+
Sbjct  9    KMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEK-MMDEITTVDIASYRDDRLS  67

Query  118  -----AGKS--NNTVRIELAMLGHLFRTAIQEWSIGLTFNPVANIRKPSPGTGRDRRLSL  170
                 +G+    NTVR+ELA+L+ L+  A  EW+   T NPV  +RKP  + GRDRRL+ 
Sbjct  68   QVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRT-NPVEMVRKPKISGGRDRRLTS  126

Query  171  DEQARLFAAVSAHSNPMLGWIVGLAVETGMRSSEIATLRRSQVDLNRRVVNLRDTKNGSA  230
            +E+ RL +    + NP L  I  LA+ET+MR +EI +LR+ ++DL++ V +L  TKNGS+
Sbjct  127  QEERRL-SRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSS  185

Query  231  RVVPLTRAAADVLRLALSNPIRPLDSDLVFFGEPGRDGKRRPYVFQKLWTSIVRDIGLAD  290
            R VPL+R A ++L+ +++    +L +++  ++ +G         F+  W   ++ + + D
Sbjct  186  RDVPLSRKARHLLQ-GMTV---ALSGNVFHYSSSG---------FKSAWRVALQRLNIVD  232

Query  291  LHFHDLRHEAVSRLVEAG-LSDQEVAAISGHKSMQMLKRYTHLRAEDLVEKLDA  343
            LHFHDLRHEA+SRL E G L+  EVAAISGH+S++MLKRYTHLRA +LV KLDA
Sbjct  233  LHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDA  286

45) XALc_2647 in NC_013722


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  156 bits (574),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 122/302 (41%), Positives = 189/302 (63%), Gaps = 29/302 (9%)

Query  58   RMTIEDALKRYLSEVSPTKRQASAD---SDARHAKPLMQNLGRYSLAALTPELIAKYRDD  114
            +M++  AL +Y + VS  KR    +       +  PL +++    +  +T   IA YRDD
Sbjct  9    KMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKM----MDEITTVDIASYRDD  64

Query  115  RLAGLDRKDAKGKPAPKPRSPNTVRLDLALLGHLFNVAIKEWGIGLTYNPVQSIRRPAPS  174
            RL+ ++ + ++  ++      NTVRL+LALL+ L+N+A  EWG   T NPV+ +R+P  S
Sbjct  65   RLSQVNTRTGRCISG------NTVRLELALLSSLYNLASVEWGTCRT-NPVEMVRKPKIS  117

Query  175  PGRDRRLTREEEIRLMVAVDAHSNPMLGWIVRIALETGMRSSEITGLRRSQVDLDRRVAR  234
             GRDRRLT +EE RL    + + NP L  I ++A+ET+MR +EI +LR+ ++DL++ VA+
Sbjct  118  GGRDRRLTSQEERRLSRYFQEQ-NPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAH  176

Query  235  LQETKNTMSRTVPLTVEATRLFREALNNPVRPIDTDLIFFGEPGRDNKRRAYQFNPIWMR  294
            L  TKN  SR VPL+  A +L    L+    ++  +++ ++ +G         F++ W  
Sbjct  177  LPMTKNGSSRDVPLSRKARHL----LQGMTVALSGNVFHYSSSG---------FKSAWRV  223

Query  295  IKKDAGLPDFRFHDLRHEAVSRFVEAG-LSDQEVAAISGHKSMQMLKRYTHLRAEDLVGK  353
              +   + D++FHDLRHEA+SR+ E G L+  EVAAISGH+S++MLKRYTHLRA +LV+K
Sbjct  224  ALQRLNIVDLHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSK  283

Query  354  LD  355
            LD
Sbjct  284  LD  285

46) LFML04_1653 in NC_018649


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  153 bits (565),  Expect = 9e-39, Method: Compositional matrix adjust.
 Identities = 125/301 (42%), Positives = 178/301 (60%), Gaps = 31/301 (10%)

Query  16   TLAEALDRYLQEVSSKKKGAYQESRRIENLKSHKLAKRYLASIQGKDIAEYRDERL----  71
            +L+ ALD+Y   VS  K+G  QE  R+  ++ H LA + +  I   DIA YRD+RL    
Sbjct  11   SLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVN  70

Query  72   ----KSVSQASVRLELALLSHLFNTAIREWGMNGILNPVSQIRLPKKAISRDRRLLPGEE  127
                + +S  +VRLELALLS L+N A  EWG     NPV  +R PK + +RDRRL  ++E
Sbjct  71   TRTGRCISGNTVRLELALLSSLYNLASVEWGTCRT-NPVEMVRKPKISGGRDRRL-TSQE  128

Query  128  EKILGAC-DEYGGDLPYVVRLALATGMRRGELASLVWDNIDLKKRTATLPETKNGEKRIV  186
            E+ L+   +E    L  + +LA+ T+MR+GE+ SL W++IDL+   A LP TKNG  R V
Sbjct  129  ERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDV  188

Query  187  PLSFEAVQILKDLPRRLDGNVFGFVDSHSITTAFIRSVSRARSTYEKECAEKGMKPDPGF  246
            PLS  A ++L+++   L GNVF +  S ++ +A   ++ R                    
Sbjct  189  PLSRKARHLLQGMTVALSGNVFHYSSS-GFKSAWRVALQRLN------------------  229

Query  247  LVNLTFHDLRHEATSRFFELG-LDTPFVKKITGHKTYQMLDRYTHLRAEDIAEKLDQLNK  305
            +V+L FHDLRHEA SR+FELG L+   V  I+GH++ +ML RYTHLRA ++  KLD   +
Sbjct  230  IVDLHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRR  289

Query  306  Q  306
            Q
Sbjct  290  Q  290

47) Pnap_3921 in NC_008781


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  152 bits (560),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 113/278 (41%), Positives = 176/278 (64%), Gaps = 12/278 (4%)

Query  59   SFGDVMRRYMKEITPGKRGCLEETIRLTATLRLKISKFSMVNLTPEVLAEYRDERLKS--  116
            S++  + +Y   ++  KRG  +E  R+    R  ++   M ++T   +A YRD+RL    
Sbjct  11   SLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVN  70

Query  117  -----CQPSTVVR-DLAVLSSIINHARREWRFPIQNPIEMIRKPTMPPGRDRVLSRTDEV  170
                 C ++  VR +LA+LSS+ N A  EW     NP+EM+RKP ++ GRDR L+  +E 
Sbjct  71   TRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRLTSQEER  130

Query  171  TLLTELLPTGRRNPLMQPIVVIAIETAMRRGEILGLRWEHVDLDQQTVFLPITKNGKSRY  230
             L +  +    +NP +++I  +AIETAMR+GEIL+LRWEH+DL++    LP+TKNG SR 
Sbjct  131  RL-SRYFQE--QNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRD  187

Query  231  VPLSKRAVETLRTVDRSIDGRVFPIGMAAMEANFLKAVRRGNLGDLHFHDLRHTGTSRMA  290
            VPLS++A + L+ +  ++ G VF  + ++  +    A++R N+ DLHFHDLRH + SR+ 
Sbjct  188  VPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISRLF  247

Query  291  N-KLPNVIELAAVTGHTSLQMLKRYYHPKAHDLAMKLG  327
            +    NV+E+AA++GH SL+MLKRY H +A +L  KL+
Sbjct  248  ELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285

48) PSPTO_3949 in NC_004578


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  151 bits (555),  Expect = 6e-38, Method: Compositional matrix adjust.
 Identities = 114/272 (42%), Positives = 181/272 (67%), Gaps = 16/272 (5%)

Query  88   RYESEVTESKKGAKQE--RVRIKKWMESKFAGKSLASLRSSDMASYRD-----AEIKAGR  140
            +Y + V+  K+G +QE  RVR+ ++    +A K +  + + D+ASYRD      + ++GR
Sbjct  18   KYYATVSVHKRGHQQEFYRVRVIQR--HPLAEKMMDEITTVDIASYRDDRLSQVNTRTGR  75

Query  141  STA--TVRLDLAVISHLYTVATKDWGIEGLTNPCRALRMPKGSKQRERRPTADELKSLYK  198
              +  TVRL+LA++S LY +A+ +WG    TNP   +R PK S  R+RR T++E + L +
Sbjct  76   CISGNTVRLELALLSSLYNLASVEWGT-CRTNPVEMVRKPKISGGRDRRLTSQEERRLSR  134

Query  199  AAGEISPELPVIIELAVETAMRRSELVTLRKDQI--QGKVAFLEDTKNGERRSVPLSSRA  256
               E +P L  I++LA+ETAMR++E+++LR ++I  Q  VA L  TKNG  R VPLS +A
Sbjct  135  YFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDVPLSRKA  194

Query  257  RELIEGVPAPIKGGPLFRLKADTVSNYFPLACEKANIQGLRLHDLRHEATSRLFERG-FT  315
            R+L++G+  ++ +G +F+  +    +   +A ++ NI +L++HDLRHEA SRLFE G + 
Sbjct  195  RHLLQGMTVAL-SGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISRLFELGTLN  253

Query  316  MMEVASITGHKTLAMLKRYTHLSPQDLAEKLG  347
            +MEVA+I+GH++L MLKRYTHL + +L  KL+
Sbjct  254  VMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285

49) PputW619_3971 in NC_010501


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  150 bits (551),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 115/277 (42%), Positives = 176/277 (64%), Gaps = 12/277 (4%)

Query  74   TLDEALDRYLSEVTSTKKGAKQEQVRIKKWKEHKLASKGLAAIRSSDMAAYRDAELKEGK  133
            +L  ALD+Y + V+  K+G +QE  R++  + H LA K +  I + D+A+YRD  L + +
Sbjct  11   SLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVN  70

Query  134  -------STATVRLNLAVISHLFTVATKEWGIEGLTNPCRAIRMPKGSKERDRRPTPAEL  186
                   S  TVRL+LA++S L+ +A+ EWG    TNP   +R PK S  RDRR T+ E 
Sbjct  71   TRTGRCISGNTVRLELALLSSLYNLASVEWGT-CRTNPVEMVRKPKISGGRDRRLTSQEE  129

Query  187  TALYKAAGQMNAQLPVFIELAVETAMRRSELLMLRRDHV--RGKVAYLEDTKNGERRAVP  244
              L +   + N+ L  +++LA+ETAMR++E+L LR++H+  +  VA L  TKNG  R VP
Sbjct  130  RRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDVP  189

Query  245  LSSRAIALLEGLPTPIGGGRYFNLALNTISNYFPRACAAAGIEGLRLHDLRHEATSRFFE  304
            LS +A  LL+G+  +++G   F+ + + + +    A     I +L++HDLRHEA SR+FE
Sbjct  190  LSRKARHLLQGMTVALSGN-VFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISRLFE  248

Query  305  RG-FTMMEVASITGHKTLAMLKRYTHLSPHDLAEKLG  340
             G + +MEVA+I+GH++L MLKRYTHL + +L  KL+
Sbjct  249  LGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285

50) B479_20185 in NC_019905


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  148 bits (545),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 115/277 (42%), Positives = 177/277 (64%), Gaps = 12/277 (4%)

Query  59   TLAEALDRYLSEVTSTKKGAKQEQVRIKKWKEHKLASKALAAIRSSDMATYRDAELKEGK  118
            +L+ ALD+Y + V+  K+G +QE  R++  + H LA K +  I + D+A+YRD  L + +
Sbjct  11   SLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVN  70

Query  119  -------STATVRLNLAVISHLYTVATKEWGIEGLTNPCRAIRMPKGSKERDRRPTPAEL  171
                   S  TVRL+LA++S LY +A+ EWG    TNP   +R PK S  RDRR T+ E 
Sbjct  71   TRTGRCISGNTVRLELALLSSLYNLASVEWGT-CRTNPVEMVRKPKISGGRDRRLTSQEE  129

Query  172  AALYKAAGQMNAQLPVFIELAVETAMRRSELLMLRRDQV--RGKVAYLEDTKNGERRAVP  229
              L +   + N+ L  +++LA+ETAMR++E+L LR++++  +  VA L  TKNG  R VP
Sbjct  130  RRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDVP  189

Query  230  LSSRAIALLDGLPTPIGGGRYFNLALNTISNYFPRACVAAGIEGLRLHDLRHEATSRFFE  289
            LS +A  LL+G+  +++G   F+ + + + +    A     I +L++HDLRHEA SR+FE
Sbjct  190  LSRKARHLLQGMTVALSGN-VFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISRLFE  248

Query  290  RG-FTMMEVASITGHKTLAMLKRYTHLSPQDLAEKLG  325
             G + +MEVA+I+GH++L MLKRYTHL + +L  KL+
Sbjct  249  LGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285

51) LFML04_0607 in NC_018649


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  145 bits (532),  Expect = 4e-36, Method: Compositional matrix adjust.
 Identities = 122/293 (42%), Positives = 171/293 (59%), Gaps = 32/293 (10%)

Query  59   TLSEALDRY--EREKNKKGVQQYTSLVNVWKRHPLSKRFLTTIQGKDIAEYRDNRLETV-  115
            +LS ALD+Y      +K+G QQ    V V +RHPL+ + +  I   DIA YRD+RL  V 
Sbjct  11   SLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVN  70

Query  116  -------GAQTVLHEIGLLSRLYNTAIKEWGMGGLLNPVVQIRKPKMPKARDRRLKHGEP  168
                   +++TV  E++LLS LYN A  EWG     NPV  +RKPK++ +RDRRL   E 
Sbjct  71   TRTGRCISGNTVRLELALLSSLYNLASVEWGTCRT-NPVEMVRKPKISGGRDRRLTSQEE  129

Query  169  ERICG--ASKSEILTSIVWFAVETGMRQAEIAGMTWDLVDLKKRTVTLPDTKNGEKRIVP  226
             R+      ++  L +I  +A+ET+MRQ+EI ++ W+ +DL+     LP TKNG  R VP
Sbjct  130  RRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDVP  189

Query  227  LSTEALRILSDLPRRLDGKVWGMEPHSISQAFRKAVSRARKAYEQECEEKGQKPDPSYLA  286
            LS  A ++L ++   L G+V    + ++  A R A+ R                    + 
Sbjct  190  LSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLN------------------IV  231

Query  287  DLTFHDLRHEATSRFFEKG-LNPMQVAAITGHKTLQMLKRYTHLKAEDLAELL  338
            DL FHDLRHEA SR+FE G LN M+VAAI+GH++L+MLKRYTHL+A +L   L
Sbjct  232  DLHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKL  284

52) PSEBR_a5153 in NC_015379


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  140 bits (516),  Expect = 9e-35, Method: Compositional matrix adjust.
 Identities = 128/294 (44%), Positives = 195/294 (67%), Gaps = 20/294 (6%)

Query  79   RLTLEKALQQYLREVSPTKKPTTQRAEATKAQQLIRH-LGKYSLAALSSEVIANYRDTRL  137
            +++L KAL++Y   VS  K+   ++ E  + + + RH L+   +  +++  IA+YRD RL
Sbjct  9    KMSLSKALDKYYATVSVHKR--GHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRL  66

Query  138  GSLTNR-GNPTSNNTVRLELALLSHLFTVAIQEWGLGLTFNPVLNIRKPSPGEGrdrrls  196
            + +  R G   S NTVRLELALLS L+ +A  EWG   T NPV  +RKP  + GRDRRL+
Sbjct  67   SQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRT-NPVEMVRKPKISGGRDRRLT  125

Query  197  peeerrllAAVNNHSNPMLGWIVRIALETGMRSSEITGLRRHQIDLKRRVVRLSDTKNDS  256
            ++EERRL    +++ NP L  I ++A+ET+MR +EI +LR+++IDL++ V +L+ TKN+S
Sbjct  126  SQEERRLSRYFQEQ-NPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGS  184

Query  257  ARTVPLSRLATVTFQAALENPTRPQDCDLVFFGEPGKDGKRRPYAFTKVWGVLKKKFGMP  316
            +R VPLSR A    +  L+  T +   ++  ++ +G         F   W V  +++ + 
Sbjct  185  SRDVPLSRKA----RHLLQGMTVALSGNVFHYSSSG---------FKSAWRVALQRLNIV  231

Query  317  DLRFHDLRHEAVSRFVE-GGLSDQEVSAISGHKSMQMLKRYTHLRAEDLVGRLD  369
            DL+FHDLRHEA+SR+ E G L+  EV+AISGH+S++MLKRYTHLRA +LV++LD
Sbjct  232  DLHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285

53) D521_1820 in NC_020417


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  139 bits (511),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 118/289 (41%), Positives = 182/289 (63%), Gaps = 20/289 (6%)

Query  52   THQAQKTSFGELIERYLREVTPLMRGAQADTIRLKSILRRPIAKVNILQLNSSRIAKYRD  111
             ++ +K S++  +++Y   V+   RG Q +  R++ I R+P+A   + ++ +  IA YRD
Sbjct  4    PQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRD  63

Query  112  ERLTEIA-------PGTVVR-ELAYFSSIINHARREWGINIPNPVLSIRKPAQPQGRNRV  163
            +RL+++        +G  VR ELA +SS+ N A  EWG    NPV  +RKP  + GR+R 
Sbjct  64   DRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRR  123

Query  164  LSHDEERIL---LQACEPKANRNIYTRPFVILALETAMRRGEILSLRWENIDYLKRTAYL  220
            L+ +EER L   +Q  +  A + I+      LA+ETAMR+GEILSLRWE+ID     A L
Sbjct  124  LTSQEERRLSRYFQE-QNPALHAIFH-----LAIETAMRQGEILSLRWEHIDLQHGVAHL  177

Query  221  QLTKNGESRTVPLSTRAVETLQALPVSIDGRVLPINFAALETNFKrardraelrdlrIHD  280
             +TKNG SR VPLS +A + LQ++ V++ G V+  + +++ +  + A +R ++ DL++HD
Sbjct  178  PMTKNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHD  237

Query  281  LRHTAITRLAERLPNL--IELSAVSGHKSLAMLKRYYHPRAEDIARKLA  327
            LRH AI+RL E L  L  +E++A+SGH+SL MLKRY H RA ++  KL 
Sbjct  238  LRHEAISRLFE-LGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285

54) XOO0599 in NC_006834


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  139 bits (512),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 121/302 (41%), Positives = 189/302 (63%), Gaps = 29/302 (9%)

Query  94   RMTIEDALKRYLSEISPTKRPASAD---SDARHAKPLMQNLGKYSLAALTPELIAKYRDD  150
            +M++  AL +Y + +S  KR    +       +  PL +++    +  +T   IA YRDD
Sbjct  9    KMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKM----MDEITTVDIASYRDD  64

Query  151  RLAGLDRKDAKGKPAPKPRSPNTVRLDLALLGHLFNVAIKEWGIGLTYNPVQSIRRPAPS  210
            RL+ ++ + ++  ++      NTVRL+LALL+ L+N+A  EWG   T NPV+ +R+P  S
Sbjct  65   RLSQVNTRTGRCISG------NTVRLELALLSSLYNLASVEWGTCRT-NPVEMVRKPKIS  117

Query  211  PGRDrrltreeetrlMAAVDAHSNPMLGWIVRIALETGMRSSEITGLRRNQVDLDRRVVR  270
             GRDRRLT +EE RL    + + NP L  I ++A+ET+MR +EI +LR++++DL++ V +
Sbjct  118  GGRDRRLTSQEERRLSRYFQEQ-NPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAH  176

Query  271  LQETKNTMSRTVPLTVEATRLFREALNNPVRPIDTNLIFFGEPGRDNKRRAYQFNPIWTR  330
            L  TKN  SR VPL+  A +L    L+    ++  N++ ++ +G         F++ W  
Sbjct  177  LPMTKNGSSRDVPLSRKARHL----LQGMTVALSGNVFHYSSSG---------FKSAWRV  223

Query  331  IKKDAGVPDFRFHDLRHEAVSRFVEAG-LSDQEVAAISGHKSMQMLKRYTHLRAEDLVGK  389
              +   + D++FHDLRHEA+SR+ E G L+  EVAAISGH+S++MLKRYTHLRA +LV+K
Sbjct  224  ALQRLNIVDLHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSK  283

Query  390  LD  391
            LD
Sbjct  284  LD  285

55) Rfer_3039 in NC_007908


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  138 bits (506),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 111/276 (41%), Positives = 171/276 (62%), Gaps = 23/276 (8%)

Query  58   RTTLGEALGRYQKEKTIHKRSPQQEIHRIRAWQKHPLAMRSLASLRTADFAEYRDERLDV  117
            + +L+ AL++Y    ++HKR+ QQE+ R+R  Q+HPLA + +  + T D+A YRD+RL  
Sbjct  9    KMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQ  68

Query  118  V----GR----NTVRLELALIGHLCTVAISEWSL----PIERSWIVKGLLPKPGDARSRR  165
            V    GR    NTVRLELAL++ L  +A  EW+     P+E  +      PK +++R RR
Sbjct  69   VNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRK-----PKISGGRDRR  123

Query  166  LVGDEETRLLAAAEQSYALNLTLAIKLGILTGMRNGELTHLEWSQIDLEQHTISLSMTKN  225
            L ++EE RL    ++  +  L   + L+I T+MR+GE+  L W +IDL++    L+MTKN
Sbjct  124  LTSQEERRLSRYFQEQNP-ALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKN  182

Query  226  GDARVVPLFKAAVELLRAIPRPKDGGRLFEFHDSNGLSAAFRRACERANIVDLHFHDLRH  285
            G +R VPL + A +LL+++  +  G  +F++  S+G+ +A R A +R NIVDLHFHDLRH
Sbjct  183  GSSRDVPLSRKARHLLQGMTVALSGN-VFHY-SSSGFKSAWRVALQRLNIVDLHFHDLRH  240

Query  286  EAASRL--APHVPATALCKLMGWRSFQMSLRYYNQL  319
            EA SRL     +    +  + G RS++M L+ Y +L
Sbjct  241  EAISRLFELGTLNVMEVAAISGHRSLNM-LKRYTHL  275

56) PSPTO_0535 in NC_004578


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  136 bits (498),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 124/294 (43%), Positives = 192/294 (66%), Gaps = 21/294 (7%)

Query  105  RMTLEAALKRYLSDITPTKKPTTQRGETSKAKKLIEH-LGKYSLAALSADIIAGYRDKRL  163
            +M+L  AL +Y + ++  K+   ++ E  + + +  H L+   +  +++  IA+YRD RL
Sbjct  9    KMSLSKALDKYYATVSVHKR--GHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRL  66

Query  164  NE-PSRGGT-ISNNTVRLELALLSHLYTVAIQEWGLGLTFNPVLNIRKPSPGDGrdrrls  221
            ++  +R G  IS NTVRLELALLS LY +A  EWG   T NPV  +RKP  ++GRDRRL+
Sbjct  67   SQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRT-NPVEMVRKPKISGGRDRRLT  125

Query  222  peeerlllAAVNRHSNPMLGWIVCIALETGMRSSEISSLRRPQVDLAKRVIRLSDTKNDG  281
            ++EER L    + + NP L  I  +A+ET+MR +EI SLR+ ++DL   V +L+ TKN++
Sbjct  126  SQEERRLSRYFQEQ-NPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGS  184

Query  282  SRTVPLSKRATEVFKAAMDNPVRPIDCNLVFFGEPGKDGKRRPYTFTKIWGQLKKKLDLP  341
            SR VPLS++A ++    ++    ++  N+  ++ +G         F   W    ++L++ 
Sbjct  185  SRDVPLSRKARHL----LQGMTVALSGNVFHYSSSG---------FKSAWRVALQRLNIV  231

Query  342  DFRFHDLRHEAVSRLVE-GGLSDQEVSAISGHKSMQMLKRYTHLRAEDLVARLD  394
            D++FHDLRHEA+SRL E G L+  EV+AISGH+S++MLKRYTHLRA +LV++LD
Sbjct  232  DLHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285

57) mma_0494 in NC_009659


> AF000001|19|G16|6995991|AAC38070.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|18516..19667|rci|-|Rci
Length=383

 Score =  126 bits (461),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 118/271 (44%), Positives = 179/271 (67%), Gaps = 10/271 (3%)

Query  66   DRYAREVTPLKKGWKQELVRLRRWQSNPLAQLTMPQLRAAELAKYRDQRLSDG-------  118
            D+Y   V+  K+G +QE+ R+R  Q +PLA+  M ++ + ++A YRD+RLS+        
Sbjct  17   DKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVNTRTGRC  76

Query  119  LGANTVRLELALISHVYEVAIKDWGLEVLINPVRIIRKPKlprgrerrltegeedllleY  178
            +++NTVRLELAL+S +Y++A  +WG     NPV ++RKPK++ GR+RRLT  EE  L  Y
Sbjct  77   ISGNTVRLELALLSSLYNLASVEWG-TCRTNPVEMVRKPKISGGRDRRLTSQEERRLSRY  135

Query  179  CKKKGaallrlviilalETAMRRGEIASLHTENIDLDSRLIFLDQTKNGDKRKVPLSRRA  238
             + + +AL  +  +   ETAMR+GEI SL+ E+IDL+  +  L  TKNG  R VPLSR+A
Sbjct  136  FQEQNPALHAIFHLAI-ETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDVPLSRKA  194

Query  239  QKELENYLCGKHGELVPLHPDNISGAFSQACKVCGISGLTLHDLRHEATSRLFEKG-FNM  297
            +  L+    +  G++    +  + +A   A +   I +L +HDLRHEA SRLFE G +N+
Sbjct  195  RHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISRLFELGTLNV  254

Query  298  MEVAAITGHKTLTMLKRYTHLDTADFLVRLG  328
            MEVAAI+GH++L MLKRYTHL + +++ +L+
Sbjct  255  MEVAAISGHRSLNMLKRYTHLRAYQLVSKLD  285