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PAthogenisity Island DataBase (PAI DB)

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Homologs of virD4-1 gene of NC_011498_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) virD4-1
( YP_002301090.1 )

VirD4 coupling protein

NC_011498
(Helicobacter pylori P12)

0.0

100

2) HPAKL117_06635
( YP_007017847.1 )

conjugal transfer protein TraG

NC_019560
(Helicobacter pylori Aklavik117)

0.0

3) HPPN135_05115
( YP_005790213.1 )

conjugal transfer protein (traG)

NC_017379
(Helicobacter pylori Puno135)

0.0

4) HPSH169_01135
( YP_006225425.1 )

conjugal transfer protein TraG

NC_017740
(Helicobacter pylori Shi169)

0.0

5) HPSH_04545
( YP_001910374.1 )

conjugal transfer protein TraG

NC_010698
(Helicobacter pylori Shi470)

0.0

6) HPCU_01270
( YP_005766346.1 )

conjugal transfer protein (traG)

NC_017358
(Helicobacter pylori Cuz20)

0.0

7) virD4-1
( YP_006331085.1 )

VirD4 coupling protein

NC_017919
(Helicobacter pylori XZ274)

0.0

8) virD4-1
( YP_006338259.1 )

VirD4 coupling protein

NC_017926
(Helicobacter pylori XZ274)

0.0

9) HPG27_974
( YP_002266593.1 )

cag island DNA transfer protein

NC_011333
(Helicobacter pylori G27)

0.0

10) HPPC_07755
( YP_003927805.1 )

conjugal transfer protein (traG)

NC_014555
(Helicobacter pylori PeCan4)

0.0

11) HPSH417_05600
( YP_006224742.1 )

conjugal transfer protein TraG

NC_017739
(Helicobacter pylori Shi417)

0.0

12) HPGAM_05160
( YP_005780720.1 )

VirD4 coupling protein

NC_017371
(Helicobacter pylori Gambia94/24)

0.0

13) HPSJM_07015
( YP_003929280.1 )

VirD4 coupling protein

NC_014560
(Helicobacter pylori SJM180)

0.0

14) traG
( YP_005783978.1 )

putative conjugal transfer protein

NC_017374
(Helicobacter pylori 2017)

0.0

15) traG
( YP_005791827.1 )

conjugal transfer protein

NC_017381
(Helicobacter pylori 2018)

0.0

16) hp908_1012
( YP_005765509.1 )

hypothetical protein

NC_017357
(Helicobacter pylori 908)

0.0

17) HPSA20_1121
( YP_008472067.1 )

type IV secretory system Conjugative DNA transfer family protein

NC_022130
(Helicobacter pylori SouthAfrica20)

0.0

18) HPSA_04660
( YP_005771521.1 )

VirD4 coupling protein

NC_017361
(Helicobacter pylori SouthAfrica7)

0.0

19) HPSNT_00395
( YP_005786245.1 )

conjugal transfer protein (traG)

NC_017376
(Helicobacter pylori Santal49)

0.0

20) K751_06575
( YP_007984273.1 )

conjugal transfer protein TraG

NC_021218
(Helicobacter pylori UM066)

0.0

21) virD4-1
( YP_005777010.1 )

conjugal transfer protein

NC_017367
(Helicobacter pylori F57)

0.0

22) HCD_07585
( YP_006221714.1 )

VirD4 coupling protein

NC_017735
(Helicobacter cetorum MIT 99-5656)

0.0

23) HCD_08335
( YP_006221859.1 )

conjugal transfer protein TraG

NC_017735
(Helicobacter cetorum MIT 99-5656)

0.0

24) HCW_04295
( YP_006222758.1 )

cag island DNA transfer protein

NC_017737
(Helicobacter cetorum MIT 00-7128)

3e-176

25) HPLT_08359
( YP_005773739.1 )

conjugal transfer protein (traG)

NC_017363
(Helicobacter pylori Lithuania75)

3e-173

26) HPSA_07635
( YP_005772081.1 )

conjugal transfer protein (traG)

NC_017361
(Helicobacter pylori SouthAfrica7)

7e-173

27) HPAKL117_02245
( YP_007017001.1 )

VirD4 coupling protein

NC_019560
(Helicobacter pylori Aklavik117)

1e-132

28) HPIN_03825
( YP_005782078.1 )

VirD4 coupling protein

NC_017372
(Helicobacter pylori India7)

3e-131

29) HBZC1_17110
( YP_004608409.1 )

conjugal transfer protein (traG)

NC_015674
(Helicobacter bizzozeronii CIII-1)

1e-130

30) HPSH112_01300
( YP_006226980.1 )

type IV secretion system protein VirD4

NC_017741
(Helicobacter pylori Shi112)

3e-130

31) HPSH417_07575
( YP_006225125.1 )

type IV secretion system protein VirD4

NC_017739
(Helicobacter pylori Shi417)

3e-130

32) virD4
( YP_003728559.1 )

type IV secretion system protein VirD4

NC_014256
(Helicobacter pylori B8)

2e-121

33) HPGAM_07455
( YP_005781145.1 )

VirD4 coupling protein

NC_017371
(Helicobacter pylori Gambia94/24)

9e-121

34) HCN_1916
( YP_006236183.1 )

hypothetical protein

NC_017761
(Helicobacter cinaedi PAGU611)

5e-120

35) K750_09030
( YP_008357808.1 )

virD4 coupling protein

NC_021217
(Helicobacter pylori UM037)

7e-103

36) virD4-1
( YP_007536641.1 )

conjugal transfer protein

NC_020508
(Helicobacter pylori OK113)

2e-102

• Sequence Alignments

1) virD4-1 in NC_011498


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  924 bits (3499),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 575/575 (100%), Positives = 575/575 (100%), Gaps = 0/575 (0%)

Query  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60
            MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG
Sbjct  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60

Query  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120
            FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD
Sbjct  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120

Query  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180
            LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG
Sbjct  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180

Query  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240
            ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ
Sbjct  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240

Query  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300
            SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE
Sbjct  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300

Query  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360
            KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS
Sbjct  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360

Query  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420
            FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV
Sbjct  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420

Query  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480
            RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE
Sbjct  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480

Query  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540
            YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS
Sbjct  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540

Query  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575
            GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF
Sbjct  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575

2) HPAKL117_06635 in NC_019560


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  919 bits (3480),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 569/575 (99%), Positives = 574/575 (99%), Gaps = 0/575 (0%)

Query  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60
            MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG
Sbjct  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60

Query  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLNVPSSCVVLDIKGELFD  120
            FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLL+VPSSCVVLDIKGELFD
Sbjct  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120

Query  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180
            LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG
Sbjct  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180

Query  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240
            ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ
Sbjct  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240

Query  241  SSDNGFVKENGRYMAKVENGVKKMKPNVNVELLWYKQVAEQVYTDPENPKNYDGSVNNLE  300
            SSDNGFVKENGRYMAKVENGVKKMKPN NVELLWYKQVAEQVYTDPENPKNYDGSVN+LE
Sbjct  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300

Query  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360
            KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS
Sbjct  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360

Query  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420
            FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV
Sbjct  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420

Query  421  RFGKLPFLLEMPALSRSYGVVLIFITQSNALIEKYYGREDARIVNSTVAYKVIFKMDDLE  480
            RFGKLPFLLEMPALSRSYGVVLIFITQ+NALIEKYYGREDARIVNSTVAYK+IFKMDDLE
Sbjct  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480

Query  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIILVS  540
            YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVI+LVS
Sbjct  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540

Query  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575
            GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF
Sbjct  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575

3) HPPN135_05115 in NC_017379


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  916 bits (3469),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 565/575 (99%), Positives = 574/575 (99%), Gaps = 0/575 (0%)

Query  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60
            MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG
Sbjct  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60

Query  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLNVPSSCVVLDIKGELFD  120
            FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLL+VPSSCVVLDIKGELFD
Sbjct  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120

Query  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180
            LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG
Sbjct  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180

Query  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240
            ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ
Sbjct  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240

Query  241  SSDNGFVKENGRYMAKVENGVKKMKPNVNVELLWYKQVAEQVYTDPENPKNYDGSVNNLE  300
            SSDNGFVKENGRYMAKVENGVKKMKPN NVELLWYKQVAEQVYTDPENPKNYDGSVN+LE
Sbjct  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300

Query  301  KDDQGNVIVKEGMLDPVIRNETNKWAKANNKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360
            KDDQGNVI+KEGMLDP+IRNE+NKWAKAN+KEFASIKSVYSRFMQVFTSYQVKSATDSMS
Sbjct  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360

Query  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420
            FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV
Sbjct  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420

Query  421  RFGKLPFLLEMPALSRSYGVVLIFITQSNALIEKYYGREDARIVNSTVAYKVIFKMDDLE  480
            RFGKLPFLLEMPALSRSYGVVLIFITQ+NALIEKYYGREDARIVNSTVAYK+IFKMDDLE
Sbjct  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480

Query  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIILVS  540
            YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVI+LVS
Sbjct  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540

Query  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575
            GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF
Sbjct  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575

4) HPSH169_01135 in NC_017740


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  916 bits (3470),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 566/575 (99%), Positives = 574/575 (99%), Gaps = 0/575 (0%)

Query  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTFPKACKDVFTLGSSKSYPMTLNFNKG  60
            MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKT+PKACKDVFTLGSSKSYPMTLNFNKG
Sbjct  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60

Query  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLNVPSSCVVLDIKGELFD  120
            FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLL+VPSSCVVLDIKGELFD
Sbjct  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120

Query  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180
            LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG
Sbjct  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180

Query  181  TNKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240
            +NKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ
Sbjct  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240

Query  241  SSDNGFVKENGRYMAKVENGVKKMKPNVNVELLWYKQVAEQVYTDPENPKNYDGSVNNLE  300
            SSDNGFVKENGRYMAKVENGVKKMKPN NVELLWYKQVAEQVYTDPENPKNYDGSVN+LE
Sbjct  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300

Query  301  KDDQGNVIMKEGMLDPVIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360
            KDDQGNVIMKEGMLDP+IRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS
Sbjct  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360

Query  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420
            FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV
Sbjct  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420

Query  421  RFGKLPFLLEMPALSRSYGVVLIFITQSNALIEKYYGREDARIVNSTVAYKVIFKMDDLE  480
            RFGKLPFLLEMPALSRSYGVVLIFITQ+NALIEKYYGREDARIVNSTVAYK+IFKMDDLE
Sbjct  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480

Query  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIILVS  540
            YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVI+LVS
Sbjct  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540

Query  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575
            GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF
Sbjct  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575

5) HPSH_04545 in NC_010698


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  916 bits (3469),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 565/575 (99%), Positives = 574/575 (99%), Gaps = 0/575 (0%)

Query  1    MREKFKTLRDKFKDKTNNLFHKLNSIQKDYYTKTFPKACKDVFTLGSSKSYPMTLNFNKG  60
            MREKFKTLRDKFKDKT+NLFHKLNSIQKDYYTKT+PKACKDVFTLGSSKSYPMTLNFNKG
Sbjct  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60

Query  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLNVPSSCVVLDIKGELFD  120
            FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLL+VPSSCVVLDIKGELFD
Sbjct  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120

Query  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180
            LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG
Sbjct  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180

Query  181  TNKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240
            +NKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ
Sbjct  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240

Query  241  SSDNGFVKENGRYMAKVENGVKKMKPNVNVELLWYKQVAEQVYTDPENPKNYDGSVNNLE  300
            SSDNGFVKENGRYMAKVENGVKKMKPN NVELLWYKQVAEQVYTDPENPKNYDGSVN+LE
Sbjct  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300

Query  301  KDDQGNVIMKEGMLDPVIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360
            KDDQGNVIMKEGMLDP+IRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS
Sbjct  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360

Query  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420
            FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV
Sbjct  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420

Query  421  RFGKLPFLLEMPALSRSYGVVLIFITQSNALIEKYYGREDARIVNSTVAYKVIFKMDDLE  480
            RFGKLPFLLEMPALSRSYGVVLIFITQ+NALIEKYYGREDARIVNSTVAYK+IFKMDDLE
Sbjct  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480

Query  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIILVS  540
            YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVI+LVS
Sbjct  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540

Query  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575
            GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF
Sbjct  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575

6) HPCU_01270 in NC_017358


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  915 bits (3466),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 566/575 (99%), Positives = 574/575 (99%), Gaps = 0/575 (0%)

Query  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTFPKACKDVFTLGSSKSYPMTLNFNKG  60
            MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKT+PKACKDVFTLGSSKSYPMTLNFNKG
Sbjct  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60

Query  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLNVPSSCVVLDIKGELFD  120
            FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLL+VPSSCVVLDIKGELFD
Sbjct  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120

Query  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180
            LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG
Sbjct  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180

Query  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240
            ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ
Sbjct  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240

Query  241  SSDNGFVKENGRYMAKVENGVKKMKPNVNVELLWYKQVAEQVYTDPENPKNYDGSVNNLE  300
            SSDNGFVKENGRYMAKVENGVKKMKPN NVELLWYKQVAEQVYTDPENPKNYDGSVN+LE
Sbjct  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300

Query  301  KDDQGNVIMKEGMLDPVIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360
            KDDQGNVIMKEGMLDP+IRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS
Sbjct  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360

Query  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420
            FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV
Sbjct  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420

Query  421  RFGKLPFLLEMPALSRSYGVVLIFITQSNALIEKYYGREDARIVNSTVAYKVIFKMDDLE  480
            RFGKLPFLLEMPALSRSYGVVLIFITQ+NALIEKYYGREDARIVNSTVAYK+IFKMDDLE
Sbjct  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480

Query  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIILVS  540
            YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVI+LVS
Sbjct  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540

Query  541  AHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575
            +HKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF
Sbjct  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575

7) virD4-1 in NC_017919


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  915 bits (3468),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 568/575 (99%), Positives = 574/575 (99%), Gaps = 0/575 (0%)

Query  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTFPKACKDVFTLGSSKSYPITLNFNKG  60
            MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKT+PKACKDVFTLGSSKSYP+TLNFNKG
Sbjct  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60

Query  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120
            FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD
Sbjct  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120

Query  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180
            LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG
Sbjct  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180

Query  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240
            ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ
Sbjct  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240

Query  241  SADNGFVKENGRYMAKVENGVKKMKPNVNVELLWYKQVAEQVYTDPENPKNYDGSVNNLE  300
            S+DNGFVKENGRYMAKVENGVKKMKPN NVELLWYKQVAEQVYTDPENPKNYDGSVN+LE
Sbjct  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300

Query  301  KDDQGNIIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360
            KDDQGN+IMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS
Sbjct  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360

Query  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420
            FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV
Sbjct  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420

Query  421  RFGKLPFLLEMPALSRSYGVVLIFITQSNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480
            RFGKLPFLLEMPALSRSYGVVLIFITQ+NALIEKYYGREDARIVNSTVAYKIIFKMDDLE
Sbjct  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480

Query  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540
            YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS
Sbjct  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540

Query  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575
            GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF
Sbjct  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575

8) virD4-1 in NC_017926


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  915 bits (3468),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 568/575 (99%), Positives = 574/575 (99%), Gaps = 0/575 (0%)

Query  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTFPKACKDVFTLGSSKSYPITLNFNKG  60
            MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKT+PKACKDVFTLGSSKSYP+TLNFNKG
Sbjct  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60

Query  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120
            FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD
Sbjct  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120

Query  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180
            LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG
Sbjct  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180

Query  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240
            ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ
Sbjct  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240

Query  241  SADNGFVKENGRYMAKVENGVKKMKPNVNVELLWYKQVAEQVYTDPENPKNYDGSVNNLE  300
            S+DNGFVKENGRYMAKVENGVKKMKPN NVELLWYKQVAEQVYTDPENPKNYDGSVN+LE
Sbjct  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300

Query  301  KDDQGNIIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360
            KDDQGN+IMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS
Sbjct  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360

Query  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420
            FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV
Sbjct  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420

Query  421  RFGKLPFLLEMPALSRSYGVVLIFITQSNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480
            RFGKLPFLLEMPALSRSYGVVLIFITQ+NALIEKYYGREDARIVNSTVAYKIIFKMDDLE
Sbjct  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480

Query  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540
            YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS
Sbjct  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540

Query  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575
            GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF
Sbjct  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575

9) HPG27_974 in NC_011333


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  915 bits (3466),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 563/575 (98%), Positives = 573/575 (99%), Gaps = 0/575 (0%)

Query  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYAKTLPKACKDVFTLGSSKSYPMTLNFNKG  60
            MREKFKTLRDKFKDKTSNLFHKLNSIQKDYY+KTLPKACKDVFTLGSSKSYPMTLNFNKG
Sbjct  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60

Query  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLNVPSSCVVLDIKGELFD  120
            FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLL+VPSSCVVLDIKGELFD
Sbjct  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120

Query  121  LTAGYRQQVLKNKIFVFNPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180
            LTAGYRQQVLKNKIFVF+PLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG
Sbjct  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180

Query  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240
            ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ
Sbjct  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240

Query  241  SSDNGFIKENGRYIAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300
            SSDNGF+KENGRY+AKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE
Sbjct  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300

Query  301  KDDQGNIMMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360
            KDDQGN++MKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS
Sbjct  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360

Query  361  FEYEDLRVDNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420
            FEYEDLR DNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV
Sbjct  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420

Query  421  RFGKLPFLLEMPALSRSYGVVLIFITQSNALIEKYYGREDARIVNSTVAYKVIFKMDDLE  480
            RFGKLPFLLEMPALSRSYGVVLIFITQ+NALIEKYYGREDARIVNSTVAYK+IFKMDDLE
Sbjct  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480

Query  481  YAKQVSEEIGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540
            YAKQVSEE+GKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS
Sbjct  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540

Query  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNKEVF  575
            GHKAKPLKLKANYYFKNKELLSRINWEVKPN EVF
Sbjct  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575

10) HPPC_07755 in NC_014555


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  914 bits (3463),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 566/575 (99%), Positives = 571/575 (99%), Gaps = 0/575 (0%)

Query  1    MIEKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60
            M EKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG
Sbjct  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60

Query  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120
            FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD
Sbjct  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120

Query  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRTVEKLDFNRKRRLVDEVGNTIFAEDG  180
            LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKR VEKLDFNRKRRLVDEVGNTIFAEDG
Sbjct  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180

Query  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240
            ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ
Sbjct  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240

Query  241  SSDNGFVKENGRYMAKVENGVKKMKPNVNVELLWYKQVAEQVYTDPENPKNYDGSVNNLE  300
            SSDNGFVKENGRYMAKVENGVKKMKPN NVELLWYKQVAEQVYTDPENPKNYDGSVN+LE
Sbjct  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300

Query  301  KDDQGNVIMKEGMLDPVIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360
            KDDQGNVIMKEGMLDP+IRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS
Sbjct  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360

Query  361  FEYEDLRVDNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420
            FEYEDLR DNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV
Sbjct  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420

Query  421  RFGKLPFLLEMPALSRSYGVVLIFITQSNALIEKYYGREDARIVNSTVAYKVIFKMDDLE  480
            RFGKLPFLLEMPALSRSYGVVLIFITQ+NALIEKYYGREDARIVNSTVAYK+IFKMDDLE
Sbjct  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480

Query  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIILVS  540
            YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVI+LVS
Sbjct  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540

Query  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575
            GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF
Sbjct  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575

11) HPSH417_05600 in NC_017739


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  913 bits (3460),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 563/575 (98%), Positives = 573/575 (99%), Gaps = 0/575 (0%)

Query  1    MREKFKTLRDKFKDKTNNLFHKLNSIQKDYYTKTFPKACKDVFTLGSSKSYPMTLNFNKG  60
            MREKFKTLRDKFKDKT+NLFHKLNSIQKDYYTKT+PKACKDVFTLGSSKSYPMTLNFNKG
Sbjct  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60

Query  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLNVPSSCVVLDIKGELFD  120
            FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLL+VPSSCVVLDIKGELFD
Sbjct  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120

Query  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180
            LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG
Sbjct  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180

Query  181  TNKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240
            +NKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ
Sbjct  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240

Query  241  SNDNGFVKENGRYMAKVENGVKKMKPNVNVELLWYKQVAEQVYIDPENPKNYDGSVNNLE  300
            S+DNGFVKENGRYMAKVENGVKKMKPN NVELLWYKQVAEQVY DPENPKNYDGSVN+LE
Sbjct  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300

Query  301  KDDQGNVIMKEGMLDPVIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360
            KDDQGNVIMKEGMLDP+IRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS
Sbjct  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360

Query  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420
            FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV
Sbjct  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420

Query  421  RFGKLPFLLEMPALSRSYGVVLIFITQSNALIEKYYGREDARIVNSTVAYKVIFKMDDLE  480
            RFGKLPFLLEMPALSRSYGVVLIFITQ+NALIEKYYGREDARIVNSTVAYK+IFKMDDLE
Sbjct  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480

Query  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIILVS  540
            YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVI+LVS
Sbjct  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540

Query  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575
            GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF
Sbjct  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575

12) HPGAM_05160 in NC_017371


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  911 bits (3452),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 560/575 (98%), Positives = 571/575 (99%), Gaps = 0/575 (0%)

Query  1    MREKSKTLKDRFKDKTSNLFHKLNSIQKDYYTKMLPKACKDVFTLGSSKSYPMTLNFDKG  60
            MREK KTL+D+FKDKTSNLFHKLNSIQKDYYTK LPKACKDVFTLGSSKSYPMTLNF+KG
Sbjct  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60

Query  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLNVPSSCVVLDIKGELFD  120
            FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLL+VPSSCVVLDIKGELFD
Sbjct  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120

Query  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRKLVDEVGNTIFAEDG  180
            LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKR+LVDEVGNTIFAEDG
Sbjct  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180

Query  181  ANKDPHWTQQAKNLFVFYALYDLCAHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240
            ANKDPHWTQQAKNLFVFYALYDLC HNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ
Sbjct  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240

Query  241  SSDNGFVKENGRYMAKVENGVKKMKPNVNVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300
            SSDNGFVKENGRYMAKVENGVKKMKPN NVELLWYKQVAEQVYTDPENPKNYDGSVNHLE
Sbjct  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300

Query  301  KDDQGNIIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360
            KDDQGN+IMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS
Sbjct  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360

Query  361  FEYEDLRTDNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420
            FEYEDLR+DNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV
Sbjct  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420

Query  421  RFGKLPFLLEMPALSRSYGVVLIFITQSNALIEKYYGREDARIVNSTVAYKVIFKMDDLE  480
            RFGKLPFLLEMPALSRSYGVVLIFITQ+NALIEKYYGREDARIVNSTVAYK+IFKMDDLE
Sbjct  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480

Query  481  YAKQVSEEIGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIILVS  540
            YAKQVSEE+GKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVI+LVS
Sbjct  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540

Query  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575
            GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF
Sbjct  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575

13) HPSJM_07015 in NC_014560


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  910 bits (3448),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 562/575 (98%), Positives = 570/575 (99%), Gaps = 0/575 (0%)

Query  1    MREKSKTLKDRFKDKTSNLFHKLNSIQKDYYTKILPKACKDVFTLGSSKSYPMTLIFNKG  60
            MREK KTL+D+FKDKTSNLFHKLNSIQKDYYTK LPKACKDVFTLGSSKSYPMTL FNKG
Sbjct  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60

Query  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLNVPSSCVVLDIKGELFD  120
            FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLL+VPSSCVVLDIKGELFD
Sbjct  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120

Query  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180
            LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG
Sbjct  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180

Query  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240
            ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ
Sbjct  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240

Query  241  SSDNGFVKENGRYMAKVENGVKKMKPNVNVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300
            SSDNGFVKENGRYMAKVENGVKKMKPN NVELLWYKQVAEQVYTDPENPKNYDGSVNHLE
Sbjct  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300

Query  301  KDDQGNIIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360
            KDDQGN+IMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS
Sbjct  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360

Query  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420
            FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV
Sbjct  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420

Query  421  RFGKLPFLLEMPALSRSYGVVLIFIAQSNALIEKYYGKEDARIVNSTVAYKIIFKMDDLE  480
            RFGKLPFLLEMPALSRSYGVVLIFI+Q+NALIEKYYG+EDARIVNSTVAYKIIFKMDDLE
Sbjct  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480

Query  481  YAKQVSEEVGKMTRKTRSHSTEKGQLIMGGTSSIGKEAWDLLSAQDIMNIDKDEVIILVS  540
            YAKQVSEEVGKMTRKTRSHSTEKGQLI GGTSSIGKEAWDLLSAQDIMNIDKDEVI+LVS
Sbjct  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540

Query  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575
            GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF
Sbjct  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575

14) traG in NC_017374


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  894 bits (3388),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 554/575 (97%), Positives = 567/575 (99%), Gaps = 2/575 (0%)

Query  1    MREKSKTLKDRFKDKTSNLFHKLNSIQKDYYTKMLPKACKDVFTLGSSKSYPMTLNFNKG  60
            MREK KTL+D+FKDKTSNLFHKLNSIQKDYYTK LPKACKDVFTLGSSKSYPMTLNFNKG
Sbjct  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60

Query  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLNVPSSCVVLDIKGELFD  120
            FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLL+VPSSCVVLDIKGELFD
Sbjct  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120

Query  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNLKRRLVDEVGNTIFVEDG  180
            LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFN KRRLVDEVGNTIF EDG
Sbjct  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180

Query  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240
            ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ
Sbjct  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240

Query  241  SSDNGFVKENGRYMAKVENGVKKMKPNVNVELLWYKQVAEQVYT--ENPKNYDGSVNHLE  298
            SSDNGFVKENGRYMAKVENGVKKMKPN NVELLWYKQVAEQVYT  ENPKNYDGSVNHLE
Sbjct  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300

Query  299  KDDQGNIIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  358
            KDDQGN+IMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS
Sbjct  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360

Query  359  FEYEDLRTDNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  418
            FEYEDLR+DNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV
Sbjct  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420

Query  419  RFGKLPFLLEMPALSKSYGVVLIFITQSNALIEKYYGKEDARIVNSTVAYKVIFKMDDLE  478
            RFGKLPFLLEMPALS+SYGVVLIFITQ+NALIEKYYG+EDARIVNSTVAYK+IFKMDDLE
Sbjct  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480

Query  479  YAKQVSEEIGKMTRKTRSHSTEKGQLIMGGTSSISKEAWDLLSAQDIMNIDKDEVIILVS  538
            YAKQVSEE+GKMTRKTRSHSTEKGQLI GGTSSI+KEAWDLLSAQDIMNIDKDEVI+LVS
Sbjct  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540

Query  539  GHKAKPLKLKANYYFKNKELFSRINWEVKPNEEVF  573
            GHKAKPLKLKANYYFKNKEL+SRINWEVKPNEEVF
Sbjct  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575

15) traG in NC_017381


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  894 bits (3388),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 554/575 (97%), Positives = 567/575 (99%), Gaps = 2/575 (0%)

Query  1    MREKSKTLKDRFKDKTSNLFHKLNSIQKDYYTKMLPKACKDVFTLGSSKSYPMTLNFNKG  60
            MREK KTL+D+FKDKTSNLFHKLNSIQKDYYTK LPKACKDVFTLGSSKSYPMTLNFNKG
Sbjct  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60

Query  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLNVPSSCVVLDIKGELFD  120
            FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLL+VPSSCVVLDIKGELFD
Sbjct  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120

Query  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNLKRRLVDEVGNTIFVEDG  180
            LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFN KRRLVDEVGNTIF EDG
Sbjct  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180

Query  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240
            ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ
Sbjct  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240

Query  241  SSDNGFVKENGRYMAKVENGVKKMKPNVNVELLWYKQVAEQVYT--ENPKNYDGSVNHLE  298
            SSDNGFVKENGRYMAKVENGVKKMKPN NVELLWYKQVAEQVYT  ENPKNYDGSVNHLE
Sbjct  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300

Query  299  KDDQGNIIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  358
            KDDQGN+IMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS
Sbjct  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360

Query  359  FEYEDLRTDNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  418
            FEYEDLR+DNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV
Sbjct  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420

Query  419  RFGKLPFLLEMPALSKSYGVVLIFITQSNALIEKYYGKEDARIVNSTVAYKVIFKMDDLE  478
            RFGKLPFLLEMPALS+SYGVVLIFITQ+NALIEKYYG+EDARIVNSTVAYK+IFKMDDLE
Sbjct  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480

Query  479  YAKQVSEEIGKMTRKTRSHSTEKGQLIMGGTSSISKEAWDLLSAQDIMNIDKDEVIILVS  538
            YAKQVSEE+GKMTRKTRSHSTEKGQLI GGTSSI+KEAWDLLSAQDIMNIDKDEVI+LVS
Sbjct  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540

Query  539  GHKAKPLKLKANYYFKNKELFSRINWEVKPNEEVF  573
            GHKAKPLKLKANYYFKNKEL+SRINWEVKPNEEVF
Sbjct  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575

16) hp908_1012 in NC_017357


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  894 bits (3388),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 554/575 (97%), Positives = 567/575 (99%), Gaps = 2/575 (0%)

Query  1    MREKSKTLKDRFKDKTSNLFHKLNSIQKDYYTKMLPKACKDVFTLGSSKSYPMTLNFNKG  60
            MREK KTL+D+FKDKTSNLFHKLNSIQKDYYTK LPKACKDVFTLGSSKSYPMTLNFNKG
Sbjct  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60

Query  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLNVPSSCVVLDIKGELFD  120
            FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLL+VPSSCVVLDIKGELFD
Sbjct  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120

Query  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNLKRRLVDEVGNTIFVEDG  180
            LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFN KRRLVDEVGNTIF EDG
Sbjct  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180

Query  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240
            ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ
Sbjct  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240

Query  241  SSDNGFVKENGRYMAKVENGVKKMKPNVNVELLWYKQVAEQVYT--ENPKNYDGSVNHLE  298
            SSDNGFVKENGRYMAKVENGVKKMKPN NVELLWYKQVAEQVYT  ENPKNYDGSVNHLE
Sbjct  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300

Query  299  KDDQGNIIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  358
            KDDQGN+IMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS
Sbjct  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360

Query  359  FEYEDLRTDNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  418
            FEYEDLR+DNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV
Sbjct  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420

Query  419  RFGKLPFLLEMPALSKSYGVVLIFITQSNALIEKYYGKEDARIVNSTVAYKVIFKMDDLE  478
            RFGKLPFLLEMPALS+SYGVVLIFITQ+NALIEKYYG+EDARIVNSTVAYK+IFKMDDLE
Sbjct  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480

Query  479  YAKQVSEEIGKMTRKTRSHSTEKGQLIMGGTSSISKEAWDLLSAQDIMNIDKDEVIILVS  538
            YAKQVSEE+GKMTRKTRSHSTEKGQLI GGTSSI+KEAWDLLSAQDIMNIDKDEVI+LVS
Sbjct  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540

Query  539  GHKAKPLKLKANYYFKNKELFSRINWEVKPNEEVF  573
            GHKAKPLKLKANYYFKNKEL+SRINWEVKPNEEVF
Sbjct  541  GHKAKPLKLKANYYFKNKELLSRINWEVKPNEEVF  575

17) HPSA20_1121 in NC_022130


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  893 bits (3382),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 550/560 (99%), Positives = 559/560 (99%), Gaps = 0/560 (0%)

Query  16   ASNLFHKLNSIQKDYYAKTLPKACKDVFTLGSSKSYPMTLNFNKGFCLGLYKGLNSLKPT  75
            +SNLFHKLNSIQKDYY+KTLPKACKDVFTLGSSKSYPMTLNFNKGFC+GLYKGLNSLKPT
Sbjct  16   TSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKGFCVGLYKGLNSLKPT  75

Query  76   YYDAPLSTLIIAPPGSGKTAAVAVPNLLNVPSSCVVLDIKGELFDLTAGYRQQVLKNKIF  135
            YYDAPLSTLIIAPPGSGKTAAVAVPNLL+VPSSCVVLDIKGELFDLTAGYRQQVLKNKIF
Sbjct  76   YYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFDLTAGYRQQVLKNKIF  135

Query  136  VFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLF  195
            VFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLF
Sbjct  136  VFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLF  195

Query  196  VFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQSSDNGFVKENGRYMA  255
            VFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQSSDNGFVKENGRYMA
Sbjct  196  VFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQSSDNGFVKENGRYMA  255

Query  256  KVENGVKKMKPNVNVELLWYKQVAEQVYTDPENPKNYDGSVNHLEKDDQGNIIMKEGMLD  315
            KVENGVKKMKPN NVELLWYKQVAEQVYTDPENPKNYDGSVNHLEKDDQGN+IMKEGMLD
Sbjct  256  KVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLEKDDQGNVIMKEGMLD  315

Query  316  PIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYI  375
            PIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYI
Sbjct  316  PIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYI  375

Query  376  KIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALS  435
            KIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALS
Sbjct  376  KIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALS  435

Query  436  RSYGVVLIFITQSNALIEKYYGREDARIVNSTVAYKVIFKMDDLEYAKQVSEEVGKMTRK  495
            RSYGVVLIFITQ+NALIEKYYGREDARIVNSTVAYK+IFKMDDLEYAKQVSEEVGKMTRK
Sbjct  436  RSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRK  495

Query  496  TRSHSTEKGQLITGGTSSIGKEAWDLLSTQDIMNIDKDEVIILVSGHKAKPLKLKANYYF  555
            TRSHSTEKGQLITGGTSSIGKEAWDLLS+QDIMNIDKDEVI+LVSGHKAKPLKLKANYYF
Sbjct  496  TRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVSGHKAKPLKLKANYYF  555

Query  556  KNKELLSRINWEVKPNEEVF  575
            KNKELLSRINWEVKPNEEVF
Sbjct  556  KNKELLSRINWEVKPNEEVF  575

18) HPSA_04660 in NC_017361


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  893 bits (3381),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/560 (99%), Positives = 559/560 (99%), Gaps = 0/560 (0%)

Query  16   ASNLFHKLNSIQKDYYAKTLPKACKDVFTLGSSKSYPMTLNFNKGFCLGLYKGLNSLKPT  75
            +SNLFHKLNSIQKDYY+KTLPKACKDVFTLGSSKSYPMTLNFNKGFC+GLYKGLNSLKPT
Sbjct  16   TSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKGFCVGLYKGLNSLKPT  75

Query  76   YYDAPLSTLIIAPPGSGKTAAVAVPNLLNVPSSCVVLDIKGELFDLTAGYRQQVLKNKIF  135
            YYDAPLSTLIIAPPGSGKTAAVAVPNLL+VPSSCVVLDIKGELFDLTAGYRQQVLKNKIF
Sbjct  76   YYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFDLTAGYRQQVLKNKIF  135

Query  136  VFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLF  195
            VFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLF
Sbjct  136  VFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLF  195

Query  196  VFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQSSDNGFVKENGRYMA  255
            VFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQSSDNGFVKENGRYMA
Sbjct  196  VFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQSSDNGFVKENGRYMA  255

Query  256  KVENGVKKMKPNVNVELLWYKQVAEQVYTDPENPKNYDGSVNHLEKDDQGNIIMKEGMLD  315
            KVENGVKKMKPN NVELLWYKQVAEQVYTDPENPKNYDGSVNHLEKDDQGN+IMKEGMLD
Sbjct  256  KVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLEKDDQGNVIMKEGMLD  315

Query  316  PIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYI  375
            PIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYI
Sbjct  316  PIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYI  375

Query  376  KIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALS  435
            KIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALS
Sbjct  376  KIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALS  435

Query  436  RSYGVVLIFITQSNALIEKYYGREDARIVNSTVTYKVIFKMDDLEYAKQVSEEVGKMTRK  495
            RSYGVVLIFITQ+NALIEKYYGREDARIVNSTV+YK+IFKMDDLEYAKQVSEEVGKMTRK
Sbjct  436  RSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRK  495

Query  496  TRSHSTEKGQLITGGTSSIGKEAWDLLSTQDIMNIDKDEVIILVSGHKAKPLKLKANYYF  555
            TRSHSTEKGQLITGGTSSIGKEAWDLLS+QDIMNIDKDEVI+LVSGHKAKPLKLKANYYF
Sbjct  496  TRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVSGHKAKPLKLKANYYF  555

Query  556  KNKELLSRINWEVKPNEEVF  575
            KNKELLSRINWEVKPNEEVF
Sbjct  556  KNKELLSRINWEVKPNEEVF  575

19) HPSNT_00395 in NC_017376


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  890 bits (3372),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/560 (99%), Positives = 558/560 (99%), Gaps = 0/560 (0%)

Query  16   ASNLFHKLNSIQKDYYTKTLPKACKDAFTLGSSKSYPMTLNFNKGFCVGLYKGLNSLKPT  75
            +SNLFHKLNSIQKDYYTKTLPKACKD FTLGSSKSYPMTLNFNKGFCVGLYKGLNSLKPT
Sbjct  16   TSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKGFCVGLYKGLNSLKPT  75

Query  76   YYDAPLSTLIIAPPGSGKTAAVAVPNLLNVPSSCVVLDIKGELFDLTAGYRQQVLKNKIF  135
            YYDAPLSTLIIAPPGSGKTAAVAVPNLL+VPSSCVVLDIKGELFDLTAGYRQQVLKNKIF
Sbjct  76   YYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFDLTAGYRQQVLKNKIF  135

Query  136  VFDPLGNNNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLF  195
            VFDPLGN+NTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLF
Sbjct  136  VFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLF  195

Query  196  VFYALYDLCVHNASTFFEIASAPIKNYVPLINPQSQFYTELYECQSSDNGFVKENGRYMA  255
            VFYALYDLCVHN+STFFEIASAPIKNYVPLINPQS+FYTELYECQSSDNGFVKENGRYMA
Sbjct  196  VFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQSSDNGFVKENGRYMA  255

Query  256  KVENGVKKMKPNVNVELLWYKQVAEQVYTDPENPKNYDGSVNNLEKDDQGNIIMKEGMLD  315
            KVENGVKKMKPN NVELLWYKQVAEQVYTDPENPKNYDGSVN+LEKDDQGN+IMKEGMLD
Sbjct  256  KVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLEKDDQGNVIMKEGMLD  315

Query  316  PIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYI  375
            PIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYI
Sbjct  316  PIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYI  375

Query  376  KIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALS  435
            KIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALS
Sbjct  376  KIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALS  435

Query  436  RSYGVVLIFITQSNALIEKYYGREDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRK  495
            RSYGVVLIFITQ+NALIEKYYGREDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRK
Sbjct  436  RSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRK  495

Query  496  TRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIILVSGHKAKPLKLKANYYF  555
            TRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVI+LVSGHKAKPLKLKANYYF
Sbjct  496  TRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVSGHKAKPLKLKANYYF  555

Query  556  KNKELLSRINWEVKPNEEVF  575
            KNKELLSRINWEVKPNEEVF
Sbjct  556  KNKELLSRINWEVKPNEEVF  575

20) K751_06575 in NC_021218


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  886 bits (3355),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 544/560 (98%), Positives = 557/560 (99%), Gaps = 0/560 (0%)

Query  16   ASNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKGFCVGLYKGLNSLKPT  75
            +SNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKGFCVGLYKGLNSLKPT
Sbjct  16   TSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKGFCVGLYKGLNSLKPT  75

Query  76   YYDAPLSTLIIAPPGSGKTAAVAVPNLLNVPSSCVVLDIKGELFDLTAGYRQQVLKNKIF  135
            YYDAPLSTLIIAPPGSGKTAAVAVPNLL+VPSSCVVLDIKGELFDLTAGYRQQVLKNKIF
Sbjct  76   YYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFDLTAGYRQQVLKNKIF  135

Query  136  VFDPLGNNNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLF  195
            VFDPLGN+NTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLF
Sbjct  136  VFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLF  195

Query  196  VFYALYDLCVYNASTFFEIASAPIKNYVPLINPQSRFYTELYECQSSDNGFIKENGRYMS  255
            VFYALYDLCV N+STFFEIASAPIKNYVPLINPQSRFYTELYECQSSDNGF+KENGRYM+
Sbjct  196  VFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQSSDNGFVKENGRYMA  255

Query  256  KVENGVKKMKPNVNVELLWYKQVAEQVYIDPENPKNYDGSVNNLEKDDQGNIVMREGMLD  315
            KVENGVKKMKPN NVELLWYKQVAEQVY DPENPKNYDGSVN+LEKDDQGN++M+EGMLD
Sbjct  256  KVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLEKDDQGNVIMKEGMLD  315

Query  316  PIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYI  375
            PIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYI
Sbjct  316  PIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYI  375

Query  376  KIAQTDIDTLTPLIRILLESIAKNLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALS  435
            KIAQTDIDTL+PLIRILLESIAKNLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALS
Sbjct  376  KIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALS  435

Query  436  RSYGVVLIFITQSNALIEKYYGREDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRK  495
            RSYGVVLIFITQ+NALIEKYYGREDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRK
Sbjct  436  RSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRK  495

Query  496  TRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIILVSGHKAKPLKLKANYYF  555
            TRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVI+LVSGHKAKPLKLKANYYF
Sbjct  496  TRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVSGHKAKPLKLKANYYF  555

Query  556  KNKELLSRINWEVKPNEEVF  575
            KNKELLSRINWEVKPNEEVF
Sbjct  556  KNKELLSRINWEVKPNEEVF  575

21) virD4-1 in NC_017367


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  882 bits (3341),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 546/562 (98%), Positives = 556/562 (99%), Gaps = 0/562 (0%)

Query  1    MREKFKTLRDKFKDKISNLFHKLNSVQKDYYTKTLPKACKDVFTLGSSNSYPMTLNFNKG  60
            MREKFKTLRDKFKDK SNLFHKLNS+QKDYYTKTLPKACKDVFTLGSS+SYPMTLNFNKG
Sbjct  1    MREKFKTLRDKFKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKG  60

Query  61   FCVGLYKGLNSLKPTYYDAPLSTLIIVPPGSGKTAAVAVPNLLNVPSSYVVLDIKGELFD  120
            FCVGLYKGLNSLKPTYYDAPLSTLII PPGSGKTAAVAVPNLL+VPSS VVLDIKGELFD
Sbjct  61   FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFD  120

Query  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDV  180
            LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAED 
Sbjct  121  LTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDG  180

Query  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240
            ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ
Sbjct  181  ANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQ  240

Query  241  SSDNGFVKENGRYMAKVENGVKKMKPNVNVELLWYKQVAEQVYTDPENPKNYDGSVNDLE  300
            SSDNGFVKENGRYMAKVENGVKKMKPN NVELLWYKQVAEQVYTDPENPKNYDGSVN+LE
Sbjct  241  SSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE  300

Query  301  KDDQGNIIMKEGMLDPVIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360
            KDDQGN+IMKEGMLDP+IRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS
Sbjct  301  KDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMS  360

Query  361  FEYGDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420
            FEY DLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV
Sbjct  361  FEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFV  420

Query  421  RFGKLPFLLEMPALSRSYGVVLIFITQSNALIEKYYGREDARIVNSTVAYKVIFKMDDLE  480
            RFGKLPFLLEMPALSRSYGVVLIFITQ+NALIEKYYGREDARIVNSTVAYK+IFKMDDLE
Sbjct  421  RFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLE  480

Query  481  YAKQMSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIILVS  540
            YAKQ+SEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVI+LVS
Sbjct  481  YAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVS  540

Query  541  GHKAKPLKLKANYYFKNKELLS  562
            GHKAKPLKLKANYYFKNKELLS
Sbjct  541  GHKAKPLKLKANYYFKNKELLS  562

22) HCD_07585 in NC_017735


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  631 bits (2383),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 390/559 (70%), Positives = 475/559 (85%), Gaps = 8/559 (1%)

Query  22   FKGIQAFHNGYYKNLSQALC-GILTLGVSVEHPMDLNFKQGVVVGLHNN----KPVYYDT  76
            F  +++++++YY +     C +++TLG S   PM LNF++G  VGL +     KP YYD+
Sbjct  20   FHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKGFCVGLYKGLNSLKPTYYDA  79

Query  77   PLSTLIIAPPGSGKTAAVAIPNLLTLKSSVVVLDIKGELCDLTAGYRQQVLGNEIYIFNP  136
            PLSTLIIAPPGSGKTAAVA+PNLL++ SS VVLDIKGEL DLTAGYRQQVL N I++F+P
Sbjct  80   PLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFDLTAGYRQQVLKNKIFVFDP  139

Query  137  LGDDNSLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFSGDGKENDPYWRKQARNLFVFYA  196
            LG+DN+LKFNPFDKRIVEKLDFNRKRRLVDEVGNTIF+ DG ++DP W +QA+NLFVFYA
Sbjct  140  LGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLFVFYA  199

Query  197  LYDLCVKQESFLFDLAFAPIQNFVPLIHPKSPYYKELYIHKVDQDGNFILDENNEPILER  256
            LYDLCV + S +F++A API+N+VPLI+P+S +Y ELY  +  ++G F+   +N   + +
Sbjct  200  LYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQSSDNG-FV--KENGRYMAK  256

Query  257  DSNGNPILNTQANAENLWYRQVSEQVYLDVNDPRNYDGTVNRLEKDKKGNVIIKEGMLDP  316
              NG   ++ +AN E LWY+QV+EQVY D ++P+NYDG+VN+LEKD +GNVI+KEGMLDP
Sbjct  257  VENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLEKDDQGNVIMKEGMLDP  316

Query  317  VIRTWANKWSISNEKEFASIMSVYSEFMQVFTSYQVKSATDNMSFEYEDLRRKNISLYIK  376
            +IR  ANKW+ +N+KEFASI SVYS FMQVFTSYQVKSATD+MSFEYEDLR  NISLYIK
Sbjct  317  IIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYIK  376

Query  377  IAQTDIDTLAPLIRVLLESIGKNLLLRESKKFNERVYLILDEFVRFGKLPFLLEMPALSR  436
            IAQTDIDTLAPLIR+LLESI+KNLLL+ESKKF+ERVYL+LDEFVRFGKLPFLLEMPALSR
Sbjct  377  IAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALSR  436

Query  437  SYGVVIMFITQSNALIEKYYGKEDARIVNSTVAYKIVFKMDDLDYAKQLSEEIGKYTREK  496
            SYGVV++FITQ+NALIEKYYG+EDARIVNSTVAYKI+FKMDDL+YAKQ+SEE+GK TR  
Sbjct  437  SYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRKT  496

Query  497  RNRSTEKNQVIFGGTSSYSEEGYELVSAQDIMNINKDEVIILVSGHKATPLKLKANYYFK  556
            R++STEK Q+I GGTSS + E+ +L+SAQDIMNI+KDEVI+LVSGHKA PLKLKANYYFK
Sbjct  497  RSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVSGHKAKPLKLKANYYFK  556

Query  557  NKRLPKCLNIPLKPNEEAF  575
            NK L   +N  +KPNEE F
Sbjct  557  NKELLSRINWEVKPNEEVF  575

23) HCD_08335 in NC_017735


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  630 bits (2381),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 391/567 (69%), Positives = 479/567 (85%), Gaps = 8/567 (1%)

Query  2    FHQGFNKSFKGIQAFHNGYYKNLSQALC-GILTLGVSVEHPMDLNFKQGVVVGLHNN---  57
            F +  ++ F  +++++++YY +     C +++TLG S   PM LNF++G  VGL +    
Sbjct  12   FKDKTSNLFHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKGFCVGLYKGLNS  71

Query  58   -KPVYYDTPLSTLIIAPPGSGKTAAVAIPNLLTLKSSVVVLDIKGELCDLTAGYRQQVLG  116
             KP YYD+PLSTLIIAPPGSGKTAAVA+PNLL++ SS VVLDIKGEL DLTAGYRQQVL 
Sbjct  72   LKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFDLTAGYRQQVLK  131

Query  117  NEIYIFNPLGDDNSLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFSGDGKENDPYWRKQA  176
            N I++F+PLG+DN+LKFNPFDKRIVEKLDFNRKRRLVDEVGNTIF+ DG ++DP W +QA
Sbjct  132  NKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQA  191

Query  177  RNLFVFYALYDLCVKQESFLFDLAFAPIQNFVPLIHPKSPYYKELYIHKVDQDGNFILDE  236
            +NLFVFYALYDLCV + S +F++A API+N+VPLI+P+S +Y ELY  +  ++G F+   
Sbjct  192  KNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQSSDNG-FV--K  248

Query  237  NNEPILERDSNGNPILNTQANAENLWYRQVSEQVYLDVNDPRNYDGTVNRLEKDKKGNVI  296
            +N   + +  NG   ++ +AN E LWY+QV+EQVY D ++P+NYDG+VN+LEKD +GNVI
Sbjct  249  ENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLEKDDQGNVI  308

Query  297  IKEGMLDPVIRTWANKWSISNEKEFASIMSVYSEFMQVFTSYQVKSATDNMSFEYEDLRR  356
            +KEGMLDP+IR  ANKW+ +N+KEFASI SVYS FMQVFTSYQVKSATD+MSFEYEDLR 
Sbjct  309  MKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMSFEYEDLRA  368

Query  357  KNISLYIKIAQTDIDTLAPLIRVLLESIGKNLLLRESKKFNERVYLILDEFVRFGKLPFL  416
             NISLYIKIAQTDIDTLAPLIR+LLESI+KNLLL+ESKKF+ERVYL+LDEFVRFGKLPFL
Sbjct  369  DNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFVRFGKLPFL  428

Query  417  LEMPALSRSYGVVIMFITQSNALIEKYYGKEDARIVNSTVAYKIVFKMDDLDYAKQLSEE  476
            LEMPALSRSYGVV++FITQ+NALIEKYYG+EDARIVNSTVAYKI+FKMDDL+YAKQ+SEE
Sbjct  429  LEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLEYAKQVSEE  488

Query  477  IGKYTREKRNRSTEKNQVIFGGTSSYSEEGYELVSAQDIMNINKDEVIILVSGHKATPLK  536
            +GK TR  R++STEK Q+I GGTSS + E+ +L+SAQDIMNI+KDEVI+LVSGHKA PLK
Sbjct  489  VGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVSGHKAKPLK  548

Query  537  LKANYYFKNKRLPKCLNIPLKPNEEAF  563
            LKANYYFKNK L   +N  +KPNEE F
Sbjct  549  LKANYYFKNKELLSRINWEVKPNEEVF  575

24) HCW_04295 in NC_017737


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  612 bits (2311),  Expect = 3e-176, Method: Compositional matrix adjust.
 Identities = 367/560 (66%), Positives = 469/560 (84%), Gaps = 9/560 (1%)

Query  21   FKGIQTFHNSYYKNLSQALC-GILTLGVSVEHPMDLNFKQGVVVGLHNN----KPVYYDT  75
            F  ++++++ YY +     C +++TLG S   PM LNF++G  VGL +     KP YYD+
Sbjct  20   FHKLNSIQKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKGFCVGLYKGLNSLKPTYYDA  79

Query  76   PLSTLIIAPPGSGKTAAVAIPNLLTLKSSVVVLDIKGELCDLTAGYRQQVLGNEIYIFNP  135
            PLSTLIIAPPGSGKTAAVA+PNLL++ SS VVLDIKGEL DLTAGYRQQVL N I++F+P
Sbjct  80   PLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFDLTAGYRQQVLKNKIFVFDP  139

Query  136  LGDDNSLKFNPFDKRIVEKLNFDRKRRLAEEVSKTIFTSIDGKEGDSYWREQAGNLFAFY  195
            LG+DN+LKFNPFDKRIVEKL+F+RKRRL +EV++TIF+  DG + D+ W +QA NLF FY
Sbjct  140  LGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAE-DGANKDPHWTQQAKNLFVFY  198

Query  196  ALYDLCVKQESFLFDLAFAPIQNFVPLIHPKSPYYRELYIHKVDQDGNFILDDNNEPMLE  255
            ALYDLCV + S +F++A API+N+VPLI+P+S +Y ELY  +  ++G F+   +N   + 
Sbjct  199  ALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRFYTELYECQSSDNG-FV--KENGRYMA  255

Query  256  RDSSGNPILNTQANPENLWYRQVSEQVYLDVNDPRNYDGTVNRLQRDKKGNIIVEEGMLD  315
            +  +G   ++ +AN E LWY+QV+EQVY D ++P+NYDG+VN+L++D +GN+I+ EGMLD
Sbjct  256  KVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLEKDDQGNVIMKEGMLD  315

Query  316  PIVRNEANKWANSNEKEFASIRNMYSKFTQVFTSYPIKEATSSMSFEYEDLRRKNISLYI  375
            PI+RNEANKWA++N+KEFASI+++YS+F QVFTSY +K AT SMSFEYEDLR  NISLYI
Sbjct  316  PIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYI  375

Query  376  KIAQTDIDILAPLIRVLLESIGKNLLLRESKKFNERVYFILDEFVRFGKLPFLLEMPALS  435
            KIAQTDID LAPLIR+LLESI+KNLLL+ESKKF+ERVY++LDEFVRFGKLPFLLEMPALS
Sbjct  376  KIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALS  435

Query  436  RSYGVVIMFITQSNALIEKYYSKEDARIVNNTVAYRVVFKMNDLDYAKQLSEEIGKYTRE  495
            RSYGVV++FITQ+NALIEKYY++EDARIVN+TVAY+++FKM+DL+YAKQ+SEE+GK TR 
Sbjct  436  RSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRK  495

Query  496  KRNRSTEKNQVIFGGTSSYSEEGYELVSVQDIMNINKDEVIILVSGHYATPLKLKANYYF  555
             R++STEK Q+I GGTSS + E+ +L+S QDIMNI+KDEVI+LVSGH A PLKLKANYYF
Sbjct  496  TRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVSGHKAKPLKLKANYYF  555

Query  556  KNKRLLKCLNIPLKPNEEVF  575
            KNK LL  +N  +KPNEEVF
Sbjct  556  KNKELLSRINWEVKPNEEVF  575

25) HPLT_08359 in NC_017363


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  602 bits (2274),  Expect = 3e-173, Method: Compositional matrix adjust.
 Identities = 355/557 (64%), Positives = 465/557 (84%), Gaps = 11/557 (1%)

Query  181  QKTYYQNLLEHL-KGSMLLGLKKENPITLNFDNGLPLGVYNAMTRAKVVYYNSPLSTLIV  239
            QK YY + L    K+   LG  K  P+TLNF++G+ +G+Y+++   K  YY++PLSTLI+
Sbjct  27   QKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKGFCVGLYKGLNSLKPTYYDAPLSTLII  86

Query  240  APPGAGKTSAVAIPTLLSVPSSCVVLDIKGELCDLTAGYRQKHFKNKIFIFNPYGTDNSL  299
            APPG+GKT+AVA+P LLSVPSSCVVLDIKGEL DLTAGYRQ+ +KNKIF+F+P G DN+L
Sbjct  87   APPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFDLTAGYRQQVLKNKIFVFDPLGNDNTL  146

Query  300  YFNPFDKNIVSKMSFSEKRRLVEEIANTIFNEKS--QDPHWVEQAKNVFTFHALYELCVN  357
             FNPFDK IV K+ F+ KRRLV+E++NTIF E +  +DPHW +QAKN+F F ALY+LCV+
Sbjct  147  KFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLFVFYALYDLCVH  206

Query  358  EETTLFEIALSLDKNYTPLINKRGRFYPQVFKCVEKSKEEGGGFEMNNDGTYMLDKDANG  417
            + +T+FEIA +  KNY PLIN ++RFY +++ C    +  + GF ++++G YM   +   
Sbjct  207  NTSTFFEIASAPIKNYVPLINPQSRFYTELYEC----QSSDNGF-VKENGRYMAKVENGV  261

Query  418  KPIQIADVDVRKLWYQQVAEQIYIDIDKKENYDGTINKLELKLDKDKMPILEEGMLDPFM  477
            K ++ ++ +V  LWY+QVAEQ+Y D ++  NYDG++N LE K D++++ I+ EGMLDP++
Sbjct  262  KKMK-PNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE-KDDQGNV-IMKEGMLDPII  318

Query  478  RSYANRWANANDKEFSSIKSTFDRFMQVFTDYRVKRATSKMSFEYEDLRKDNITLYIKIA  537
            R+ AN+WA+ANDKEF+SIKS + RFMQVFT Y+VK AT  MSFEYEDLR DNI+LYIKIA
Sbjct  319  RNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYIKIA  378

Query  538  QTDIDIIAPLIRVLLESMGKNLLLKESKRFDERIYFILDEFVRFGKLSFLLEMPALSRSY  597
            QTDID +APLIR+LLES++KNLLLKESK+F+ER+Y++LDEFVRFGKL+FLLEMPALSRSY
Sbjct  379  QTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALSRSY  438

Query  598  GVVLLYITQSNAMIEKYYGKEDAKILNGTVNYRVLFRMNDYEYAQQISNEIGKMTRKTRS  657
            GVVL++ITQ+NA+IEKYYG+EDA+I+N+TV Y+++F+M+D EYA+Q+S+E+GKMTRKTRS
Sbjct  439  GVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRKTRS  498

Query  658  HSTEKGQLIMGGTSSIGKEAWDLVSPQDILNIDKDEVIILVGGHQAKPLKLKANYYFRNP  717
            HSTEKGQLI GGTSSIGKEAWDL+S+QDI+NIDKDEVI+LV+GH+AKPLKLKANYYF+N 
Sbjct  499  HSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVSGHKAKPLKLKANYYFKNK  558

Query  718  KMTKCLNWEVKPNEKVF  734
             +   +NWEVKPNE VF
Sbjct  559  ELLSRINWEVKPNEEVF  575

26) HPSA_07635 in NC_017361


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  601 bits (2269),  Expect = 7e-173, Method: Compositional matrix adjust.
 Identities = 355/557 (64%), Positives = 463/557 (84%), Gaps = 11/557 (1%)

Query  154  QKTYYQNLLGHL-KGSMLLGLKKENPITLNFDNGLPLGVYDVMTRAKVVYYNSPLSTLIV  212
            QK YY + L    K+   LG  K  P+TLNF++G+ +G+Y  +   K  YY++PLSTLI+
Sbjct  27   QKDYYTKTLPKACKDVFTLGSSKSYPMTLNFNKGFCVGLYKGLNSLKPTYYDAPLSTLII  86

Query  213  APPGAGKTSAVAIPTLLSVPSSCVVLDIKGELCNLTAGYRQKHFKNKIFIFNPYGTDNSL  272
            APPG+GKT+AVA+P LLSVPSSCVVLDIKGEL +LTAGYRQ+ +KNKIF+F+P G DN+L
Sbjct  87   APPGSGKTAAVAVPNLLSVPSSCVVLDIKGELFDLTAGYRQQVLKNKIFVFDPLGNDNTL  146

Query  273  YFNPFDKKIVYKMSFSEKRRLVEEIANTIFNEKS--QDPHWVEQAKNVFTFHALYELCVN  330
             FNPFDK+IV K+ F+ KRRLV+E++NTIF E +  +DPHW +QAKN+F F ALY+LCV+
Sbjct  147  KFNPFDKRIVEKLDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLFVFYALYDLCVH  206

Query  331  EETTLFEIALSLDKNYTPLINKRGRFYPQVFKCVEKSKEEGGGFEMNNDGTYMLDKDANE  390
            + +T+FEIA +  KNY PLIN ++RFY +++ C    +  + GF ++++G YM   +   
Sbjct  207  NTSTFFEIASAPIKNYVPLINPQSRFYTELYEC----QSSDNGF-VKENGRYMAKVENGV  261

Query  391  KPIQIVDVDVRKLWYQQVAEQIYIDIDKKENYDGTINKLELKLDKDKMPILEEGMLDPFM  450
            K ++  + +V  LWY+QVAEQ+Y D ++  NYDG++N LE K D++++ I+ EGMLDP++
Sbjct  262  KKMK-PNANVELLWYKQVAEQVYTDPENPKNYDGSVNHLE-KDDQGNV-IMKEGMLDPII  318

Query  451  RSYANRWANTNTKEFSSIKSTFDRFMQVFTDYRVKRATSKMSFEYEDLRKDNITLYIKIA  510
            R+ AN+WA++N KEF+SIKS + RFMQVFT Y+VK AT  MSFEYEDLR DNI+LYIKIA
Sbjct  319  RNEANKWAKANDKEFASIKSVYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYIKIA  378

Query  511  QTDIDIIAPLIRVLLESIGKNLLLKESKRFDERIYFILDEFVRFGKLSFLLEMPALSRSY  570
            QTDID +APLIR+LLESI+KNLLLKESK+F+ER+Y++LDEFVRFGKL+FLLEMPALSRSY
Sbjct  379  QTDIDTLAPLIRILLESIAKNLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALSRSY  438

Query  571  GVVLLYITQSNAMIEKYYGKEDAKILNGTVNYKVLFRMNDYEYAQQISNEIGKMTRKTRS  630
            GVVL++ITQ+NA+IEKYYG+EDA+I+N+TV YK++F+M+D EYA+Q+S+E+GKMTRKTRS
Sbjct  439  GVVLIFITQPNALIEKYYGREDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRKTRS  498

Query  631  HSTEKGQLIMGGTSSIGKEAWDLISPQDILNIDKDEVIILVGGHQAKPLKLKANYYFRNP  690
            HSTEKGQLI GGTSSIGKEAWDL+S+QDI+NIDKDEVI+LV+GH+AKPLKLKANYYF+N 
Sbjct  499  HSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVLVSGHKAKPLKLKANYYFKNK  558

Query  691  KMAECLNWEVKPNEEVF  707
             +   +NWEVKPNEEVF
Sbjct  559  ELLSRINWEVKPNEEVF  575

27) HPAKL117_02245 in NC_019560


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  467 bits (1759),  Expect = 1e-132, Method: Compositional matrix adjust.
 Identities = 278/527 (53%), Positives = 384/527 (73%), Gaps = 24/527 (4%)

Query  113  CKVVHRLG--------VQFDNGFILGKF-GFPKLRDVCYDKPLGAMIVAPPGAGKTACVA  163
            CK V  LG        ++F++GF +G + G+  L+   YD PL+++I+APPG+GKTA VA
Sbjct  39   CKDVFTLGSSKSYPMTLNFNKGFCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVA  98

Query  164  LPNLLTLPNSCIITDIKGELRDKTAGYRQKFLNNRILIFNPYGDDNTCYFNPFDKRIVKP  223
            +PNLL++P+SC++ DIKGEL D TAGYRQ+ L+N+I++F+P G+DNT  FNPFDKRIV  
Sbjct  99   VPNLLSVPSSCVVLDIKGELFDLTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEK  158

Query  224  MNFDQRLRLVQENANNVFISEEKGED-HWVSKAKDLFSFYALYDVCSKDETNFFDVAMGP  282
            ++F+++ RLV+E +N +F  +    D HW  +AK+LF FYALYD+C  + + FF++A +P
Sbjct  159  LDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAP  218

Query  283  NRDYVNLIDKRSRYYKQLYQHD-------KKTGEIILDPQTNEPILIPNVNARKLWYLQV  335
             ++YV LI+ +SR+Y +LY+ +       K  G  +   +     + PN N   LWY QV
Sbjct  219  IKNYVPLINPQSRFYTELYECQSSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQV  278

Query  336  SEQKYVDPKDPRNFDT-------NEPEPAPRSEGALDEIVRNDARAWANSAEEEFASIIS  388
            +EQ Y DP +P+N+D        ++       EG LD I+RN+A  WA++ + EFASI S
Sbjct  279  AEQVYTDPENPKNYDGSVNHLEKDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKS  338

Query  389  TFNRFVSVFKSNQVRIATSKMSFDYEELRTDNISLYIVIAQKDINTLAPLVRVILESIAK  448
             ++RF+ VF S QV+ AT  MSF+YE+LR+DNISLYI IAQ DI+TLAPL+R++LESIAK
Sbjct  339  VYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAK  398

Query  449  NLLTNESSKKEERIYMILDEFVRFGKLPFLLEMPALCRSYNVVPLFITQDYAMIRKYYSD  508
            NLL +ES K EER+Y++LDEFVRFGKLPFLLEMPAL RSY VV +FITQ  A+I KYY+ 
Sbjct  399  NLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGR  458

Query  509  DDLKILKGVVHYNIVFKMNSAEDAEIVSKEVGEFTRQSKNYSTEKGQLVFGGSSSYSHEG  568
            +D +I+++ V Y+I+FKM+  E A  VS EVG  TR++++ STEKGQL+ GG+SS + E+
Sbjct  459  EDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEA  518

Query  569  RNLLTAQDIMNIESDEVIVIVTGAKATPLKLKANYWFKDKELLKRAN  615
            ++LL+AQDIMNI+ DEVIV+V+G KA PLKLKANY FK+KELL R N
Sbjct  519  WDLLSAQDIMNIDKDEVIVLVSGHKAKPLKLKANYYFKNKELLSRIN  565

28) HPIN_03825 in NC_017372


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  463 bits (1743),  Expect = 3e-131, Method: Compositional matrix adjust.
 Identities = 275/527 (53%), Positives = 383/527 (73%), Gaps = 24/527 (4%)

Query  113  CKVVHRLG--------VQFDNGFILGKF-GFPKLRDVCYDKPLGAMIVAPPGAGKTACVA  163
            CK V  LG        ++F++GF +G + G+  L+   YD PL+++I+APPG+GKTA VA
Sbjct  39   CKDVFTLGSSKSYPMTLNFNKGFCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVA  98

Query  164  LPNLLTLPNSCIITDIKGELRDKTAGYRQKFLNNRILIFNPYGDDNTCYFNPFDKRIVKP  223
            +PNLL++P+SC++ DIKGEL D TAGYRQ+ L+N+I++F+P G+DNT  FNPFDKRIV  
Sbjct  99   VPNLLSVPSSCVVLDIKGELFDLTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEK  158

Query  224  MNFDQRLRLVQENANNVFISEEKGED-HWVSKAKDLFSFYALYDVCSKDETNFFDVAMGP  282
            ++F+++ RLV+E +N +F  +    D HW  +AK+LF FYALYD+C  + + FF++A +P
Sbjct  159  LDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAP  218

Query  283  NRDYVNLIDKRSRYYKQLYQHD-------KKTGEIILDPQTNEPILIPNVNARKLWYLQV  335
             ++YV LI+ +SR+Y +LY+ +       K  G  +   +     + PN N   LWY QV
Sbjct  219  IKNYVPLINPQSRFYTELYECQSSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQV  278

Query  336  SEQKYADPKDPRNFDP-------NEPEPTPRSEEALDEIVRNDARAWANSAEEEFASIIS  388
            +EQ Y+DP +P+N+D        ++       E  LD I+RN+A  WA++ + EFASI S
Sbjct  279  AEQVYTDPENPKNYDGSVNHLEKDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKS  338

Query  389  TFNRFVSVFKSNQVRVATSKMSFNYEELRTDNISLYIVIAQKDINTLAPLVRVILESIAK  448
             ++RF+ VF S QV+ AT  MSF+YE+LR+DNISLYI IAQ DI+TLAPL+R++LESIAK
Sbjct  339  VYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAK  398

Query  449  NLLTNESSKKEERIYMILDEFVRFGKLPFLLEMPALCRSYNVVPLFITQDYAMIRKYYSD  508
            NLL +ES K EER+Y++LDEFVRFGKLPFLLEMPAL RSY VV +FITQ  A+I KYY+ 
Sbjct  399  NLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGR  458

Query  509  DDLKILKGVVHYNIVFKMNSAEDAEIVSKEVGEFTRQSKNYSTEKNQLVFGGSSSYSHEG  568
            +D +I+++ V Y+I+FKM+  E A  VS EVG  TR++++ STEK QL+ GG+SS + E+
Sbjct  459  EDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEA  518

Query  569  RNLLTAQDIMNIESDEVIVIITGAKATPLKLKANYWFKDKELLKRAN  615
            ++LL+AQDIMNI+ DEVIV+++G KA PLKLKANY FK+KELL R N
Sbjct  519  WDLLSAQDIMNIDKDEVIVLVSGHKAKPLKLKANYYFKNKELLSRIN  565

29) HBZC1_17110 in NC_015674


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  460 bits (1734),  Expect = 1e-130, Method: Compositional matrix adjust.
 Identities = 280/520 (54%), Positives = 397/520 (77%), Gaps = 25/520 (4%)

Query  110  PLGVCFNKGFILGKF-GFPLAKRVCYNKPLGAMIVAPPGAGKTAAIAIPNLLTLPTSCIV  168
            P+ + FNKGF +G + G+   K   Y+ PL+++I+APPG+GKTAA+A+PNLL++P+SC+V
Sbjct  52   PMTLNFNKGFCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVV  111

Query  169  TDIKGELCSLSAGYRQRVLHNEILVFNPFGEDNTCFFNPFDKRLIEPMSFDAKLRLVQEV  228
             DIKGEL  L+AGYRQ+VL N I+VF+P+G+DNT  FNPFDKR++E + F+ K RLV+EV
Sbjct  112  LDIKGELFDLTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEV  171

Query  229  ANNIFIQED-KQEDHWVAKARELFSFYALYDVCTKNESSFYDIAMWPNRDFAALIHPQSR  287
            +N IF +++ +++ HW  +A++LF FYALYD+C  N S+F++IA  P +++ +LI+PQSR
Sbjct  172  GNTIFAEDGANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSR  231

Query  288  HYAVFF--QEDENG-------NMVRTDSDIDPAKS-------FYTQVLEQKYADVNDPRN  331
             Y+ ++  Q  +NG        M + ++++   K+        Y QV EQ Y+D ++P+N
Sbjct  232  FYTELYECQSSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKN  291

Query  332  YDP--NEPEPEHRA-----EGVLDEIIRNDARGWANAAEEEFASIKSTFNRFVSVFKSPQ  384
            YD   N+ E ++++     EG+LD IIRN+A  WA+A + EFASIKS ++RF+ VF S Q
Sbjct  292  YDGSVNHLEKDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQ  351

Query  385  VKEATSNMSFKYADFRKKNITLYIKIAQTDIATLAPLIRTLLESIAKNLLIEESKKPNER  444
            VK AT +MSF Y D+R  NI+LYIKIAQTDI TLAPLIR LLESIAKNLL+ ESKK +ER
Sbjct  352  VKSATDSMSFEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEER  411

Query  445  IYFILDEFVRFGKLPFLLEMPALCRSYNVVPLFITQDYAMIRKYYSDDELKVLKGVVHYN  504
            +Y++LDEFVRFGKLPFLLEMPAL RSY VV +FITQ  A+I KYY+ ++ +++++ V Y+
Sbjct  412  VYLFLDEFVRFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYK  471

Query  505  IVFKMNSAEDAEIISKEVGQFTRLSKNTSTERGQLVFGGTSSYSLEGRELLTPQDILNIP  564
            I+FKM+  E A  +S EVG+ TR +++ STE+GQL+ GGTSS + E+++LL++QDI+NI 
Sbjct  472  IIFKMDDLEYAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNID  531

Query  565  DDEVIVIVTGNKAKPLKLKANFYFKDKELLNRVDWTTKSN  604
             DEVIV+V+G+KAKPLKLKAN+YFK+KELL+R++W  K+N
Sbjct  532  KDEVIVLVSGHKAKPLKLKANYYFKNKELLSRINWEVKPN  571

30) HPSH112_01300 in NC_017741


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  459 bits (1729),  Expect = 3e-130, Method: Compositional matrix adjust.
 Identities = 276/527 (53%), Positives = 382/527 (73%), Gaps = 24/527 (4%)

Query  113  CKVVHRLG--------VQFDKGFILGKF-GFPKLRDVCYDKPLGAMIVAPPGAGKTACVA  163
            CK V  LG        ++F+KGF +G + G+  L+   YD PL+++I+APPG+GKTA VA
Sbjct  39   CKDVFTLGSSKSYPMTLNFNKGFCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVA  98

Query  164  LPNLLTLPNSCIITDIKGELRDKTAGYRQKFLNNRILIFNPYGDDNTCYFNPFDKRIVKP  223
            +PNLL++P+SC++ DIKGEL D TAGYRQ+ L+N+I++F+P G+DNT  FNPFDKRIV  
Sbjct  99   VPNLLSVPSSCVVLDIKGELFDLTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEK  158

Query  224  MNFDQRLRLVQENANNVFISEEKGED-HWVSKAKDLFSFYALHDVCSKDETNFFDVAMGP  282
            ++F+++ RLV+E +N +F  +    D HW  +AK+LF FYAL D+C  + + FF++A +P
Sbjct  159  LDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAP  218

Query  283  NRDYVNLIDKRSRYYKQLYQHD-------KKTGEIILDPQTNEPILIPNVNARKLWYLQV  335
             ++YV LI+ +SR+Y +LY+ +       K  G  +   +     + PN N   LWY QV
Sbjct  219  IKNYVPLINPQSRFYTELYECQSSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQV  278

Query  336  SEQKYADPKDPRNFDP-------NEPEPAPRSEGALDEIVRNDARAWANSAEEEFASIIS  388
            +EQ Y+DP +P+N+D        ++       EG LD I+RN+A  WA++ + EFASI S
Sbjct  279  AEQVYTDPENPKNYDGSVNHLEKDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKS  338

Query  389  TFNRFVSVFKSNQVRIATSKMSFDYEELRTDNISLYIVIAQKDINTLAPLVRVILESIAK  448
             ++RF+ VF S QV+ AT  MSF+YE+LR+DNISLYI IAQ DI+TLAPL+R++LESIAK
Sbjct  339  VYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAK  398

Query  449  NLLTNESSKKEERIYMILDEFVRFGKLPFLLEMPALCRSYNVVPLFITQDYAMIRKNYSD  508
            NLL +ES K EER+Y++LDEFVRFGKLPFLLEMPAL RSY VV +FITQ  A+I K Y+ 
Sbjct  399  NLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGR  458

Query  509  DDLKILKGVVHYNIVFKMNSAEDAEIVSKEVGEFTRQSKNYSTEKGQLVFGGSSSYSHEG  568
            +D +I+++ V Y+I+FKM+  E A  VS EVG  TR++++ STEKGQL+ GG+SS + E+
Sbjct  459  EDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEA  518

Query  569  RNLLTAQDIMNIKSDEVIVIVTGAKATPLKLKANYWFRDKELLKRAN  615
            ++LL+AQDIMNI  DEVIV+V+G KA PLKLKANY F++KELL R N
Sbjct  519  WDLLSAQDIMNIDKDEVIVLVSGHKAKPLKLKANYYFKNKELLSRIN  565

31) HPSH417_07575 in NC_017739


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  459 bits (1729),  Expect = 3e-130, Method: Compositional matrix adjust.
 Identities = 276/527 (53%), Positives = 382/527 (73%), Gaps = 24/527 (4%)

Query  113  CKVVHRLG--------VQFDKGFILGKF-GFPKLRDVCYDKPLGAMIVAPPGAGKTACVA  163
            CK V  LG        ++F+KGF +G + G+  L+   YD PL+++I+APPG+GKTA VA
Sbjct  39   CKDVFTLGSSKSYPMTLNFNKGFCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVA  98

Query  164  LPNLLTLPNSCIITDIKGELRDKTAGYRQKFLNNRILIFNPYGDDNTCYFNPFDKRIVKP  223
            +PNLL++P+SC++ DIKGEL D TAGYRQ+ L+N+I++F+P G+DNT  FNPFDKRIV  
Sbjct  99   VPNLLSVPSSCVVLDIKGELFDLTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEK  158

Query  224  MNFDQRLRLVQENANNVFISEEKGED-HWVSKAKDLFSFYALHDVCSKDETNFFDVAMGP  282
            ++F+++ RLV+E +N +F  +    D HW  +AK+LF FYAL D+C  + + FF++A +P
Sbjct  159  LDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAP  218

Query  283  NRDYVNLIDKRSRYYKQLYQHD-------KKTGEIILDPQTNEPILIPNVNARKLWYLQV  335
             ++YV LI+ +SR+Y +LY+ +       K  G  +   +     + PN N   LWY QV
Sbjct  219  IKNYVPLINPQSRFYTELYECQSSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQV  278

Query  336  SEQKYADPKDPRNFDP-------NEPEPAPRSEGALDEIVRNDARAWANSAEEEFASIIS  388
            +EQ Y+DP +P+N+D        ++       EG LD I+RN+A  WA++ + EFASI S
Sbjct  279  AEQVYTDPENPKNYDGSVNHLEKDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKS  338

Query  389  TFNRFVSVFKSNQVRIATSKMSFDYEELRTDNISLYIVIAQKDINTLAPLVRVILESIAK  448
             ++RF+ VF S QV+ AT  MSF+YE+LR+DNISLYI IAQ DI+TLAPL+R++LESIAK
Sbjct  339  VYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAK  398

Query  449  NLLTNESSKKEERIYMILDEFVRFGKLPFLLEMPALCRSYNVVPLFITQDYAMIRKNYSD  508
            NLL +ES K EER+Y++LDEFVRFGKLPFLLEMPAL RSY VV +FITQ  A+I K Y+ 
Sbjct  399  NLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGR  458

Query  509  DDLKILKGVVHYNIVFKMNSAEDAEIVSKEVGEFTRQSKNYSTEKGQLVFGGSSSYSHEG  568
            +D +I+++ V Y+I+FKM+  E A  VS EVG  TR++++ STEKGQL+ GG+SS + E+
Sbjct  459  EDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEA  518

Query  569  RNLLTAQDIMNIKSDEVIVIVTGAKATPLKLKANYWFRDKELLKRAN  615
            ++LL+AQDIMNI  DEVIV+V+G KA PLKLKANY F++KELL R N
Sbjct  519  WDLLSAQDIMNIDKDEVIVLVSGHKAKPLKLKANYYFKNKELLSRIN  565

32) virD4 in NC_014256


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  430 bits (1618),  Expect = 2e-121, Method: Compositional matrix adjust.
 Identities = 261/516 (51%), Positives = 372/516 (73%), Gaps = 19/516 (3%)

Query  119  LGVQFDNGFILGKF-GFPKLRNVCYDKPLGAMIVAPPGAGKTACVALPNLLTLPNSCIIT  177
            + ++F++GF +G + G+  L+   YD PL+++I+APPG+GKTA VA+PNLL++P+SC++ 
Sbjct  53   MTLNFNKGFCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVL  112

Query  178  DIKGELRDKTAGYRQKFLNNRILIFNPYGDDNTCYFNPFDKRIVEKMTFAEQLRHVKAVG  237
            DIKGEL D TAGYRQ+ L+N+I++F+P G+DNT  FNPFDKRIVEK+ F  + R V  VG
Sbjct  113  DIKGELFDLTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVG  172

Query  238  DGIFVDE----EDHWVSKAKELFVFFALLQVVTKGHSSFYDVSIAPANDYAPLIHPKSPY  293
            + IF ++    + HW  +AK+LFVF+AL ++     S+F++++ AP ++Y PLI+P+S +
Sbjct  173  NTIFAEDGANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRF  232

Query  294  YKQLYQHD-------KKTGEVILDPQTNAPMKNPQANVLKLFLNQVADQKYIDMNDEKNY  346
            Y +LY+ +       K  G  +   +      +P+ANV  L  +QVA+Q Y D ++ KNY
Sbjct  233  YTELYECQSSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNY  292

Query  347  DPR-------EPEPPYGTKGALDEIIRTDARSWANTPDDEFGSIMSSFKRFMYVYKDPKV  399
            D         +        G LD IIR +A  WA++ D EF+SI S + RFM V+   +V
Sbjct  293  DGSVNHLEKDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQV  352

Query  400  REATSKMSFDYEELRTGNISIYIVIAQIDIGTLSSLVRAFLESIAKNLMVKESSKPEERI  459
            + AT  MSF+YE+LR++NIS+YI IAQ DI+TL++L+R +LESIAKNL++KES K EER+
Sbjct  353  KSATDSMSFEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERV  412

Query  460  FIIADEFVRFGKLPFLLEMPALCRSYNVVPLFITQDYAMIRKYYSDDDLKILKGVVHYNI  519
            +++ DEFVRFGKLPFLLEMPAL RSY VV +FITQ  A+I KYY+ +D +I+++ V Y+I
Sbjct  413  YLFLDEFVRFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKI  472

Query  520  VFKMNSAEDAEIVSKEVGEFTRQSKNYSTEKGQLVFGGSSSYSHEGRNLLTAQDIMNINS  579
            +FKM+  E A  VS EVG  TR++++ STEKGQL+ GG+SS + E+++LL+AQDIMNI+ 
Sbjct  473  IFKMDDLEYAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDK  532

Query  580  DEVIVIVTGAKATPLKLKANYWFKDKELLKRANLPI  615
            DEVIV+V+G KA PLKLKANY FK+KELL R N  +
Sbjct  533  DEVIVLVSGHKAKPLKLKANYYFKNKELLSRINWEV  568

33) HPGAM_07455 in NC_017371


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  427 bits (1609),  Expect = 9e-121, Method: Compositional matrix adjust.
 Identities = 262/516 (51%), Positives = 372/516 (73%), Gaps = 19/516 (3%)

Query  119  LGVQFDNGFILGKF-GFPKLRNVCYDKPLGAMIVAPPGAGKTACVALPNLLTLPNSCIIT  177
            + ++F++GF +G + G+  L+   YD PL+++I+APPG+GKTA VA+PNLL++P+SC++ 
Sbjct  53   MTLNFNKGFCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVL  112

Query  178  DIKGELRDKTAGYRQKFLNNRILIFNPYGDDNTCYFNPFDKRIVEKMTFAEQLRHVKAVG  237
            DIKGEL D TAGYRQ+ L+N+I++F+P G+DNT  FNPFDKRIVEK+ F  + R V  VG
Sbjct  113  DIKGELFDLTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVG  172

Query  238  DGIFVDE----EDHWVSKAKELFVFFALLQVVTKGHSSFYDVSIAPANDYAPLIHPKSPY  293
            + IF ++    + HW  +AK+LFVF+AL ++     S+F++++ AP ++Y PLI+P+S +
Sbjct  173  NTIFAEDGANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRF  232

Query  294  YKQLYQHD-------KKTGEVILDPQTNAPMKNPQANVLKLFLNQVADQKYIDMNDEKNY  346
            Y +LY+ +       K  G  +   +      +P+ANV  L  +QVA+Q Y D ++ KNY
Sbjct  233  YTELYECQSSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNY  292

Query  347  DPR-------EPEPPYGTKGALDEIIRTDARSWANTPDDEFGSIMSSFKRFMYVYKDPKV  399
            D         +        G LD IIR +A  WA++ D EF+SI S + RFM V+   +V
Sbjct  293  DGSVNHLEKDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQV  352

Query  400  REATSKMSFDYEELRTGNISIYIVIAQIDIGTLSSLIRAFLESIAKNLMVKESSKPEERI  459
            + AT  MSF+YE+LR++NIS+YI IAQ DI+TL++LIR +LESIAKNL++KES K EER+
Sbjct  353  KSATDSMSFEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERV  412

Query  460  FIIADEFVRFGKLPFLLEMPALCRSYNVVPLFITQDYAMIRKYYSDDDLKILKGVVHYNI  519
            +++ DEFVRFGKLPFLLEMPAL RSY VV +FITQ  A+I KYY+ +D +I+++ V Y+I
Sbjct  413  YLFLDEFVRFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAYKI  472

Query  520  VFKMNSAEDAEIVSKEVGEFTRQSKNYSTEKGQLVFGGSSSYSHEGRNLLTAQDIMNINS  579
            +FKM+  E A  VS EVG  TR++++ STEKGQL+ GG+SS + E+++LL+AQDIMNI+ 
Sbjct  473  IFKMDDLEYAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDK  532

Query  580  DEVIVIVTGAKATPLKLKANYWFKDKELLKRANLPI  615
            DEVIV+V+G KA PLKLKANY FK+KELL R N  +
Sbjct  533  DEVIVLVSGHKAKPLKLKANYYFKNKELLSRINWEV  568

34) HCN_1916 in NC_017761


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  424 bits (1598),  Expect = 5e-120, Method: Compositional matrix adjust.
 Identities = 252/463 (55%), Positives = 352/463 (77%), Gaps = 23/463 (4%)

Query  70   LDTNFSRGGFLLGIYKDLWKQRKVYYDAPLSALIVAPPGAGKSAAVAIPNLLNLPTSCVV  129
            +  NF++G F +G+YK+L   +  YYDAPLS+LI+APPG+GK+AAVA+PNLL++P+SCVV
Sbjct  53   MTLNFNKG-FCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVV  111

Query  130  LDIKGELCDLTAGYRQKAFNNEIYIFNPLGKDNNLKFNPFDNKIVKKLDFNAKKRLVDEI  189
            LDIKGEL DLTAGYRQ+ ++N I++F+PLG+DN LKFNPFD++IV KLDFN K+RLVDE+
Sbjct  112  LDIKGELFDLTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEV  171

Query  190  ANTIFVEE-QDSDPHWIAKARELFTFYALYDICTKNESNFFDIATAPVKDYKPLIEEKSP  248
            +NTIF E+  + DPHW  +A++LF FYALYD+C  N S FF+IA+AP+K+Y PLI+ +S 
Sbjct  172  GNTIFAEDGANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSR  231

Query  249  YYSKLWD--------------FNEKTQK--RELNLDANPEKLFYSQCADQKYADVKNPLN  292
            +Y+ L +              +  K ++  + ++ +AN E L Y Q A+Q Y+D  NP N
Sbjct  232  FYTELYECQSSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKN  291

Query  293  WEYESFEQIQANKEKGI----ETLDEVVRNYARAWANAADEEFSSIKSTFNRVMSVFASY  348
             +  S ++++ + +  +      LD ++RN A  WA+A D EF+SIKS ++R M VF+SY
Sbjct  292  YD-GSVNHLEKDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSY  350

Query  349  QVRDATNAMSFEYDDLRSKNITLYIKIAQTDIDTLKSLIRVLLESIAKNLMTKESKKLDE  408
            QV+ AT++MSFEY+DLR+ NI+LYIKIAQTDIDTL +LIR+LLESIAKNL+ KESKK++E
Sbjct  351  QVKSATDSMSFEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEE  410

Query  409  RIYLVLDEFIRFGKMPFLLEMPALCRSYGIVPLYITQSYGLIKKYYGEDDLKTMTDTIAF  468
            R+YL LDEF+RFGK+PFLLEMPAL RSYG+V ++ITQ+ +LI KYYG +D + +  T+A+
Sbjct  411  RVYLFLDEFVRFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVAY  470

Query  469  QILFKMNDADSAENVSKQIGKYTREARSHSTKDGAIAFGGNRA  511
            +I+FKM+D + A +VS ++GK TR +RSHST  G +  GG  +
Sbjct  471  KIIFKMDDLEYAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSS  513

35) K750_09030 in NC_021217


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  368 bits (1382),  Expect = 7e-103, Method: Compositional matrix adjust.
 Identities = 213/417 (52%), Positives = 301/417 (73%), Gaps = 16/417 (3%)

Query  119  LGVQFDNGFILGKF-GFPKLRDVCYDKPLGAMIVAPPGAGKTACVALPNLLTLPNSCIIT  177
            + ++F++GF +G + G+  L+   YD PL+++I+APPG+GKTA VA+PNLL++P+SC++ 
Sbjct  53   MTLNFNKGFCVGLYKGLNSLKPTYYDAPLSTLIIAPPGSGKTAAVAVPNLLSVPSSCVVL  112

Query  178  DIKGELRDKTAGYRQKFLNNRILIFNPYGDDNTCYFNPFDKRIVKPMNFDQRLRLVQENA  237
            DIKGEL D TAGYRQ+ L+N+I++F+P G+DNT  FNPFDKRIV  ++F+++ RLV+E +
Sbjct  113  DIKGELFDLTAGYRQQVLKNKIFVFDPLGNDNTLKFNPFDKRIVEKLDFNRKRRLVDEVG  172

Query  238  NNVFISEEKGED-HWVSKAKDLFSFYALYDVCSKDETNFFDVAMGPNRDYVNLIDKRSRY  296
            N +F  +    D HW  +AK+LF FYALYD+C  + + FF++A +P ++YV LI+ +SR+
Sbjct  173  NTIFAEDGANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAPIKNYVPLINPQSRF  232

Query  297  YKQLYQHD-------KKTGEIILDPQTNEPILIPNVNARKLWYLQVSEQKYADPKDPRNF  349
            Y +LY+ +       K  G  +   +     + PN N   LWY QV+EQ Y+DP +P+N+
Sbjct  233  YTELYECQSSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQVAEQVYTDPENPKNY  292

Query  350  DP-------NEPEPTPRSEETLDEIVRNDARAWANSAEEEFASIISTFNRFVSVFKSNQV  402
            D        ++       E  LD I+RN+A  WA++ + EFASI S ++RF+ VF S QV
Sbjct  293  DGSVNHLEKDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKSVYSRFMQVFTSYQV  352

Query  403  RVATSKMSFDYEELRTDNISLYIVIAQKDINTLAPLVRVILESIAKNLLTNESSKKEERI  462
            + AT  MSF+YE+LR+DNISLYI IAQ DI+TLAPL+R++LESIAKNLL +ES K EER+
Sbjct  353  KSATDSMSFEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAKNLLLKESKKFEERV  412

Query  463  YMILDEFVRFGKLPFLLEMPALCRSYNVVPLFITQDYAMIRKYYSDDDLKIVKCPTA  519
            Y++LDEFVRFGKLPFLLEMPAL RSY VV +FITQ  A+I KYY+ +D +IV+   A
Sbjct  413  YLFLDEFVRFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGREDARIVNSTVA  469

36) virD4-1 in NC_020508


> NC_011498_P1|18|G18|210134651|YP_002301090.1|Helicobacter_pylori_P12|-|23683..25410|virD4-1|HPP12_0454|VirD4 
coupling protein
Length=575

 Score =  366 bits (1377),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 212/407 (53%), Positives = 293/407 (72%), Gaps = 15/407 (3%)

Query  1    MNFDQRLRLVQENANNVFISEEKGED-HWVSKAKDLFSFYALYDVCSKDETNFFDVAMGP  59
            ++F+++ RLV+E +N +F  +    D HW  +AK+LF FYALYD+C  + + FF++A +P
Sbjct  159  LDFNRKRRLVDEVGNTIFAEDGANKDPHWTQQAKNLFVFYALYDLCVHNTSTFFEIASAP  218

Query  60   NRDYVNLIDKRSRYYKQLYQHD-------KKTGEIILDPQTNEPILIPNVNARKLWYLQV  112
             ++YV LI+ +SR+Y +LY+ +       K  G  +   +     + PN N   LWY QV
Sbjct  219  IKNYVPLINPQSRFYTELYECQSSDNGFVKENGRYMAKVENGVKKMKPNANVELLWYKQV  278

Query  113  SEQKYADPKDPRNFDP-------NEPEPTPRSEEALDEIVRNDARAWANSAEEEFASIIS  165
            +EQ Y+DP +P+N+D        ++       E  LD I+RN+A  WA++ + EFASI S
Sbjct  279  AEQVYTDPENPKNYDGSVNHLEKDDQGNVIMKEGMLDPIIRNEANKWAKANDKEFASIKS  338

Query  166  TFNRFVSVFKSNQVRIATSKMSFDYEELRTDNISLYIVIAQKDINTLAPLVRVILESIAK  225
             ++RF+ VF S QV+ AT  MSF+YE+LR+DNISLYI IAQ DI+TLAPL+R++LESIAK
Sbjct  339  VYSRFMQVFTSYQVKSATDSMSFEYEDLRADNISLYIKIAQTDIDTLAPLIRILLESIAK  398

Query  226  NLLTNESSKKEERIYMILDEFVRFGKLPFLLEMPALCRSYNVVPLFITQDYAMIRKYYSD  285
            NLL +ES K EER+Y++LDEFVRFGKLPFLLEMPAL RSY VV +FITQ  A+I KYY+ 
Sbjct  399  NLLLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALSRSYGVVLIFITQPNALIEKYYGR  458

Query  286  DDLKILKGVVHYNIVFKMNSAEDAEIVSKEVGEFTRQSKNYSTEKNQLVFGGSSSYSHEG  345
            +D +I+++ V Y+I+FKM+  E A  VS EVG  TR++++ STEK QL+ GG+SS + E+
Sbjct  459  EDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEA  518

Query  346  RNLLTAQDIMNIESDEVIVIVTGAKATPLKLKANYWFKDKELLKRAN  392
            ++LL+AQDIMNI+ DEVIV+V+G KA PLKLKANY FK+KELL R N
Sbjct  519  WDLLSAQDIMNIDKDEVIVLVSGHKAKPLKLKANYYFKNKELLSRIN  565