Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of YPO0270 gene of NC_003143_P1

751

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) fliP1
( NP_991819.2 )

type III secretion system protein

NC_005810
(Yersinia pestis 91001)

2e-88

100

2) A1122_03785
( YP_005520452.1 )

type III secretion system protein YscR

NC_017168
(Yersinia pestis A1122)

2e-88

100

3) epaP
( YP_001608228.1 )

type III secretion system protein

NC_010159
(Yersinia pestis Angola)

2e-88

100

4) YPA_4012
( YP_653918.1 )

type III secretion system protein

NC_008150
(Yersinia pestis Antiqua)

2e-88

100

5) YPO0270
( YP_002345352.1 )

type III secretion system protein

NC_003143
(Yersinia pestis CO92)

2e-88

100

6) YPD4_0235
( YP_005503447.1 )

putative type III secretion apparatus protein

NC_017154
(Yersinia pestis D106004)

2e-88

100

7) YPD8_0240
( YP_005507323.1 )

putative type III secretion apparatus protein

NC_017160
(Yersinia pestis D182038)

2e-88

100

8) y0530
( NP_667867.1 )

type III secretion system protein

NC_004088
(Yersinia pestis KIM)

2e-88

100

9) YPN_3397
( YP_649324.1 )

type III secretion system protein

NC_008149
(Yersinia pestis Nepal516)

2e-88

100

10) YPDSF_3700
( YP_001165023.1 )

type III secretion system protein

NC_009381
(Yersinia pestis Pestoides F)

2e-88

100

11) YPZ3_0233
( YP_003566405.1 )

putative type III secretion apparatus protein

NC_014029
(Yersinia pestis Z176003)

2e-88

100

12) epaP
( YP_001402768.1 )

type III secretion system protein

NC_009708
(Yersinia pseudotuberculosis IP 31758)

2e-88

100

13) YPTB0327
( YP_068873.2 )

type III secretion system protein

NC_006155
(Yersinia pseudotuberculosis IP 32953)

2e-88

100

14) YPTS_0351
( YP_001870797.1 )

type III secretion system protein

NC_010634
(Yersinia pseudotuberculosis PB1/+)

2e-88

100

15) YPK_3902
( YP_001722620.1 )

type III secretion system protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

2e-88

100

16) YE105_C0338
( YP_004296539.1 )

type III secretion apparatus protein, YscR/HrcR family

NC_015224
(Yersinia enterocolitica 105.5R(r))

5e-77

17) Y11_35451
( YP_006007044.1 )

type III secretion inner membrane protein

NC_017564
(Yersinia enterocolitica Y11)

2e-76

18) ssaR
( YP_002924940.1 )

type III secretion system protein

NC_012751
(Candidatus Hamiltonella defensa T5A)

2e-65

19) escR
( NP_902277.1 )

type III secretion system protein

NC_005085
(Chromobacterium violaceum ATCC 12472)

3e-65

20) SVI_2230
( YP_003556979.1 )

type III secretion system EscR protein

NC_014012
(Shewanella violacea DSS12)

6e-65

21) Sbal195_2278
( YP_001554706.1 )

type III secretion system protein

NC_009997
(Shewanella baltica OS195)

2e-64

22) Sbal678_2288
( YP_005273495.1 )

Yop virulence translocation R

NC_016901
(Shewanella baltica OS678)

2e-64

23) Sbal175_2391
( YP_006020948.1 )

Yop virulence translocation R

NC_017571
(Shewanella baltica BA175)

3e-64

24) Sbal117_2090
( YP_006037321.1 )

Yop virulence translocation R

NC_017579
(Shewanella baltica OS117)

3e-64

25) Sbal_1974
( YP_001050347.1 )

type III secretion system protein

NC_009052
(Shewanella baltica OS155)

3e-64

26) ETAC_04225
( YP_007628336.1 )

type III secretion system protein YscR

NC_020796
(Edwardsiella tarda C07-087)

1e-59

27) esaR
( YP_003294936.1 )

type three secretion apparatus protein R

NC_013508
(Edwardsiella tarda EIB202)

1e-59

28) esaR
( YP_005698435.1 )

protein EsaR

NC_017309
(Edwardsiella tarda FL6-60)

1e-59

29) SG1305
( YP_454985.1 )

type III secretion system protein

NC_007712
(Sodalis glossinidius morsitans)

1e-57

30) ssaR
( YP_008265618.1 )

flagellar biosynthesis protein FliP

NC_021820
(Salmonella enterica 08-1736)

1e-57

31) ssaR
( YP_005237289.1 )

type III secretion system protein

NC_016856
(Salmonella enterica 14028S)

1e-57

32) SEEH1578_16330
( YP_008247325.1 )

type III secretion system protein YscR

NC_021810
(Salmonella enterica 41578)

1e-57

33) yscR
( YP_005396816.1 )

type III secretion protein

NC_017046
(Salmonella enterica 798)

1e-57

34) SSPA1332
( YP_002142171.1 )

type III secretion system protein

NC_011147
(Salmonella enterica AKU12601)

1e-57

35) yscR
( YP_150685.1 )

type III secretion protein

NC_006511
(Salmonella enterica ATCC 9150)

1e-57

36) SU5_02035
( YP_006087669.1 )

Type III secretion inner membrane protein

NC_017623
(Salmonella enterica B182)

1e-57

37) ssaR
( YP_008255384.1 )

flagellar biosynthesis protein FliP

NC_021814
(Salmonella enterica CFSAN001921)

1e-57

38) CFSAN001992_04495
( YP_007470657.1 )

type III secretion system protein YscR

NC_020307
(Salmonella enterica CFSAN001992)

1e-57

39) ssaR
( YP_008260609.1 )

flagellar biosynthesis protein FliP

NC_021818
(Salmonella enterica CFSAN002050)

1e-57

40) ssaR
( YP_008249241.1 )

flagellar biosynthesis protein FliP

NC_021812
(Salmonella enterica CFSAN002069)

1e-57

41) epaP
( YP_002215713.1 )

type III secretion system protein

NC_011205
(Salmonella enterica CT_02021853)

1e-57

42) epaP
( YP_002114432.1 )

type III secretion system protein

NC_011094
(Salmonella enterica CVM19633)

1e-57

43) STMMW_14241
( YP_005232478.1 )

putative type III secretion protein

NC_016854
(Salmonella enterica D23580)

1e-57

44) ssaR
( NP_460384.1 )

type III secretion system protein

NC_003197
(Salmonella enterica LT2)

1e-57

45) yscR
( YP_002637868.1 )

type III secretion system protein

NC_012125
(Salmonella enterica RKS4594)

1e-57

46) ssaR
( YP_216427.1 )

type III secretion system protein

NC_006905
(Salmonella enterica SC-B67)

1e-57

47) SPAB_01906
( YP_001588129.1 )

type III secretion system protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

1e-57

48) yscR
( YP_005181263.1 )

putative type III secretion protein

NC_016810
(Salmonella enterica SL1344)

1e-57

49) epaP
( YP_002045422.1 )

type III secretion system protein

NC_011083
(Salmonella enterica SL476)

1e-57

50) ssaR
( YP_005242320.1 )

type III secretion system protein

NC_016857
(Salmonella enterica ST4/74)

1e-57

51) STMDT12_C14350
( YP_005247131.1 )

type III secretion system protein

NC_016860
(Salmonella enterica T000240)

1e-57

52) STU288_03415
( YP_007901788.1 )

type III secretion system protein YscR

NC_021151
(Salmonella enterica U288)

1e-57

53) ssaR
( YP_005251923.1 )

type III secretion system protein

NC_016863
(Salmonella enterica UK-1)

1e-57

54) ssaR
( YP_002226666.1 )

type III secretion system protein

NC_011274
(Salmonella enterica 287/91)

2e-57

55) SBOV14161
( YP_008505286.1 )

type III secretion apparatus protein, YscR/HrcR family

NC_022241
(Salmonella enterica 3114)

2e-57

56) ssaR
( YP_008480906.1 )

putative type III secretion protein

NC_022221
(Salmonella enterica CDC1983-67)

2e-57

57) ssaR
( YP_008308803.1 )

flagellar biosynthesis protein FliP

NC_021844
(Salmonella enterica CFSAN000189)

2e-57

58) ssaR
( YP_002243726.1 )

type III secretion system protein

NC_011294
(Salmonella enterica P125109)

2e-57

59) ssaR
( YP_005212444.1 )

putative type III secretion protein

NC_016831
(Salmonella enterica RKS5078)

2e-57

60) SARI_01563
( YP_001570599.1 )

type III secretion system protein

NC_010067
(Salmonella enterica RSK2980)

2e-57

61) ssaR
( YP_008380650.1 )

flagellar biosynthesis protein FliP

NC_021984
(Salmonella enterica S06004)

2e-57

62) epaP
( YP_002040671.1 )

type III secretion system protein

NC_011080
(Salmonella enterica SL254)

2e-57

63) SN31241_24890
( YP_008360405.1 )

Virulence protein yscR

NC_021902
(Salmonella enterica USMARC-S3124.1)

2e-57

64) epaP
( YP_002146623.1 )

type III secretion system protein

NC_011149
(Salmonella enterica SL483)

3e-57

65) yscR
( NP_456109.1 )

putative type III secretion protein

NC_003198
(Salmonella enterica CT18)

4e-57

66) STBHUCCB_13770
( YP_005216935.1 )

hypothetical protein

NC_016832
(Salmonella enterica P-stx-12)

4e-57

67) yscR
( NP_805090.1 )

type III secretion system protein

NC_004631
(Salmonella enterica Ty2)

4e-57

68) TY21A_06540
( YP_007925612.1 )

type III secretion system protein

NC_021176
(Salmonella enterica Ty21a)

4e-57

69) NT01EI_0960
( YP_002932408.1 )

type III secretion apparatus protein, YscR/HrcR family, putative

NC_012779
(Edwardsiella ictaluri 93-146)

3e-54

70) HCH_03263
( YP_434447.1 )

type III secretion system protein

NC_007645
(Hahella chejuensis KCTC 2396)

1e-48

71) sctR
( NP_930977.1 )

type III secretion system protein

NC_005126
(Photorhabdus luminescens TTO1)

3e-48

72) sctR
( YP_003039885.1 )

type iii secretion component protein sctr

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

7e-48

73) ascR
( YP_001144302.1 )

type III secretion system protein

NC_009350
(Aeromonas salmonicida A449)

1e-47

74) PADK2_17235
( YP_006483428.1 )

type III secretion system protein YscR

NC_018080
(Pseudomonas aeruginosa DK2)

2e-47

75) pscR
( YP_005975938.1 )

type III secretion system protein

NC_017548
(Pseudomonas aeruginosa M18)

3e-47

76) pscR
( YP_005980835.1 )

type III secretion system protein

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

3e-47

77) pscR
( NP_250384.1 )

type III secretion system protein

NC_002516
(Pseudomonas aeruginosa PAO1)

3e-47

78) ssaR
( YP_008132244.1 )

flagellar biosynthesis protein FliP

NC_021577
(Pseudomonas aeruginosa RP73)

3e-47

79) pscR
( YP_791552.1 )

type III secretion system protein

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

3e-47

80) G655_16715
( YP_007710183.1 )

type III secretion system protein YscR

NC_020912
(Pseudomonas aeruginosa B136-33)

4e-47

81) escR
( YP_003232138.1 )

type III secretion system protein

NC_013361
(Escherichia coli 11368)

2e-46

82) escR
( YP_003223490.1 )

T3SS structure protein EscR

NC_013353
(Escherichia coli 12009)

2e-46

83) ECs4583
( NP_312610.1 )

type III secretion system protein

NC_002695
(Escherichia coli Sakai)

2e-46

84) escR
( YP_003236103.1 )

T3SS structure protein EscR

NC_013364
(Escherichia coli 11128)

3e-46

85) escR
( YP_003501889.1 )

type III secretion system EscR protein

NC_013941
(Escherichia coli CB9615)

3e-46

86) escR
( YP_002331425.1 )

type III secretion system protein

NC_011601
(Escherichia coli E2348/69)

3e-46

87) epaP
( YP_002273179.1 )

type III secretion system protein

NC_011353
(Escherichia coli EC4115)

3e-46

88) escR
( NP_290283.1 )

type III secretion system protein

NC_002655
(Escherichia coli EDL933)

3e-46

89) ECO55CA74_21290
( YP_006161363.1 )

type III secretion system protein YscR

NC_017656
(Escherichia coli RM12579)

3e-46

90) escR
( YP_003080495.1 )

type III secretion system protein

NC_013008
(Escherichia coli TW14359)

3e-46

91) CDCO157_4318
( YP_006315183.1 )

type III secretion system protein

NC_017906
(Escherichia coli Xuzhou21)

3e-46

92) pscR
( YP_002441218.1 )

type III secretion system protein

NC_011770
(Pseudomonas aeruginosa LESB58)

5e-46

93) escR
( YP_003366517.1 )

T3SS structural protein EscR

NC_013716
(Citrobacter rodentium ICC168)

6e-46

94) yscR
( YP_436217.1 )

type III secretion system protein

NC_007645
(Hahella chejuensis KCTC 2396)

7e-45

95) YE105_P0026
( YP_004424928.1 )

type III secretion system protein

NC_015475
(Yersinia enterocolitica 105.5R(r))

2e-44

96) yscR
( YP_001004082.1 )

type III secretion system protein

NC_008791
(Yersinia enterocolitica 8081)

2e-44

97) Y11_p0741
( YP_006007922.1 )

type III secretion inner membrane protein

NC_017565
(Yersinia enterocolitica Y11)

2e-44

98) yscR
( NP_995367.1 )

type III secretion system protein

NC_005813
(Yersinia pestis 91001)

2e-44

99) yscR
( YP_001604476.1 )

type III secretion system protein

NC_010157
(Yersinia pestis Angola)

2e-44

100) YPA_CD0018
( YP_636810.1 )

type III secretion system protein

NC_008122
(Yersinia pestis Antiqua)

2e-44

101) yscR
( NP_395178.1 )

type III secretion system protein

NC_003131
(Yersinia pestis CO92)

2e-44

102) yscR
( YP_005503177.1 )

needle complex export protein

NC_017153
(Yersinia pestis D106004)

2e-44

103) yscR
( YP_005506960.1 )

needle complex export protein

NC_017157
(Yersinia pestis D182038)

2e-44

104) YPDSF_3973
( YP_001154602.1 )

type III secretion system protein

NC_009377
(Yersinia pestis Pestoides F)

2e-44

105) yscR
( YP_003560536.1 )

needle complex export protein

NC_014017
(Yersinia pestis Z176003)

2e-44

106) pYV0071
( YP_068480.1 )

type III secretion system protein

NC_006153
(Yersinia pseudotuberculosis IP 32953)

2e-44

107) YPTS_4289
( YP_001874689.1 )

type III secretion system protein

NC_010635
(Yersinia pseudotuberculosis PB1/+)

2e-44

108) yscR
( YP_004677245.1 )

Yop proteins translocation protein R

NC_015717
(Hyphomicrobium sp. MC1)

2e-44

109) Varpa_4985
( YP_004157256.1 )

yop virulence translocation r

NC_014931
(Variovorax paradoxus EPS)

6e-43

110) DvMF_2439
( YP_002436848.1 )

type III secretion system protein

NC_011769
(Desulfovibrio vulgaris Miyazaki F)

4e-42

111) Dvul_2984
( YP_961183.1 )

type III secretion system protein

NC_008741
(Desulfovibrio vulgaris DP4)

1e-41

112) DVUA0122
( YP_009162.1 )

type III secretion system protein

NC_005863
(Desulfovibrio vulgaris Hildenborough)

1e-41

113) Deval_3224
( YP_005704003.1 )

Yop virulence translocation R

NC_017311
(Desulfovibrio vulgaris RCH1)

1e-41

114) hrcR
( YP_005210969.1 )

protein HrcR

NC_016830
(Pseudomonas fluorescens F113)

1e-41

115) NH44784_014541
( YP_008028549.1 )

Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

3e-41

116) PSEBR_a5382
( YP_004356892.1 )

type III secretion protein

NC_015379
(Pseudomonas brassicacearum NFM421)

3e-41

117) spaP
( YP_001908607.1 )

surface presentation of antigens protein SpaP

NC_010694
(Erwinia tasmaniensis Et1/99)

5e-41

118) bscR
( YP_006899833.1 )

type III secretion protein

NC_018829
(Bordetella bronchiseptica MO149)

6e-41

119) bscR
( YP_006625537.1 )

type III secretion protein

NC_018518
(Bordetella pertussis 18323)

6e-41

120) bscR
( YP_005590274.1 )

type III secretion system protein

NC_017223
(Bordetella pertussis CS)

6e-41

121) bscR
( NP_880884.1 )

type III secretion system protein

NC_002929
(Bordetella pertussis Tohama I)

6e-41

122) bscR
( YP_006967888.1 )

type III secretion protein

NC_019382
(Bordetella bronchiseptica 253)

9e-41

123) bscR
( NP_888177.1 )

type III secretion system protein

NC_002927
(Bordetella bronchiseptica RB50)

9e-41

124) bscR
( NP_884486.1 )

type III secretion system protein

NC_002928
(Bordetella parapertussis 12822)

9e-41

125) bscR
( YP_006895376.1 )

type III secretion protein

NC_018828
(Bordetella parapertussis Bpp5)

9e-41

126) hrcR
( YP_006032351.1 )

hrp protein hrcr

NC_017575
(Ralstonia solanacearum Po82)

1e-40

127) hrcR
( YP_003749779.1 )

Hypersensitivity response secretion protein hrcR, type III secretion system

NC_014310
(Ralstonia solanacearum PSI07)

1e-40

128) Aave_0449
( YP_968830.1 )

type III secretion system protein

NC_008752
(Acidovorax citrulli AAC00-1)

3e-40

129) Acav_0515
( YP_004233005.1 )

Yop virulence translocation R

NC_015138
(Acidovorax avenae ATCC 19860)

4e-40

130) D781_3938
( YP_007346313.1 )

type III secretion apparatus protein, YscR/HrcR family

NC_020064
(Serratia marcescens FGI94)

5e-40

131) hrcR
( YP_001906463.1 )

type III secretion system protein

NC_010694
(Erwinia tasmaniensis Et1/99)

6e-40

132) sctR
( YP_004022632.1 )

type III secretion inner membrane protein SctR

NC_014718
(Burkholderia rhizoxinica HKI 454)

6e-40

133) sctR
( YP_007365636.1 )

type III secretion system protein

NC_020127
(Lawsonia intracellularis N343)

1e-39

134) SctR
( YP_594912.1 )

type III secretion system protein

NC_008011
(Lawsonia intracellularis PHE/MN1-00)

1e-39

135) H045_00190
( YP_007395610.1 )

type III secretion system protein YscR

NC_020209
(Pseudomonas poae RE*1-1-14)

1e-39

136) hrcR
( YP_003539968.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

1e-39

137) hcrR
( YP_003529886.1 )

Harpin secretion protein HrcR

NC_013961
(Erwinia amylovora CFBP1430)

1e-39

138) hcrR
( YP_005804091.1 )

Harpin secretion protein HrcR

NC_017390
(Erwinia pyrifoliae DSM 12163)

1e-39

139) hrcR
( YP_002650074.1 )

type III secretion system protein

NC_012214
(Erwinia pyrifoliae Ep1/96)

1e-39

140) hrcR
( YP_005818255.1 )

type III secretion system protein

NC_017445
(Erwinia sp. Ejp617)

1e-39

141) Meso_0110
( YP_672680.1 )

type III secretion system protein

NC_008254
(Chelativorans sp. BNC1)

2e-39

142) rscR
( YP_002870380.1 )

type III secretion system protein

NC_012660
(Pseudomonas fluorescens SBW25)

3e-39

143) spaP
( YP_006216510.1 )

type III secretion system protein SpaP

NC_017731
(Providencia stuartii MRSN 2154)

5e-39

144) yscR
( YP_005082209.1 )

Yop proteins translocation protein R

NC_016642
(Pseudovibrio sp. FO-BEG1)

2e-38

145) XC_3016
( YP_244084.1 )

type III secretion system protein

NC_007086
(Xanthomonas campestris 8004)

3e-38

146) hrcR
( NP_636600.1 )

type III secretion system protein

NC_003902
(Xanthomonas campestris ATCC 33913)

3e-38

147) xccb100_3079
( YP_001904484.1 )

type III secretion system protein

NC_010688
(Xanthomonas campestris B100)

3e-38

148) hrcR
( YP_005636495.1 )

type III secretion protein HrcR

NC_017271
(Xanthomonas campestris 756C)

3e-38

149) USDA257_c21640
( YP_006397503.1 )

translocation protein y4yL

NC_018000
(Sinorhizobium fredii USDA 257)

3e-38

150) hrcR
( YP_004754990.1 )

type III secretion inner membrane protein

NC_015856
(Collimonas fungivorans Ter331)

4e-38

151) rhcR
( YP_002824496.1 )

type III secretion system protein

NC_012586
(Sinorhizobium fredii NGR234)

5e-38

152) C770_GR4pC1264
( YP_007193547.1 )

type III secretion apparatus protein, YscR/HrcR family

NC_019848
(Sinorhizobium meliloti GR4)

7e-38

153) SFHH103_04957
( YP_005191562.1 )

RhcR-like, type III secretion system

NC_016815
(Sinorhizobium fredii HH103)

8e-38

154) hrcR
( YP_198720.1 )

type III secretion system protein

NC_006834
(Xanthomonas oryzae KACC10331)

9e-38

155) hrcR
( NP_640757.1 )

type III secretion system protein

NC_003919
(Xanthomonas axonopodis 306)

1e-37

156) hrcR
( YP_004849999.1 )

type III secretion system protein

NC_016010
(Xanthomonas axonopodis F1)

1e-37

157) XAC29_02060
( YP_007634905.1 )

type III secretion system protein YscR

NC_020800
(Xanthomonas axonopodis Xac29-1)

1e-37

158) hrcR
( YP_362153.1 )

type III secretion system protein

NC_007508
(Xanthomonas campestris 85-10)

1e-37

159) hrcR
( YP_007648827.1 )

HrcR protein

NC_020815
(Xanthomonas citri Aw12879)

1e-37

160) XOO_0095
( YP_449124.1 )

type III secretion system protein

NC_007705
(Xanthomonas oryzae MAFF 311018)

1e-37

161) epaP
( YP_001911274.1 )

type III secretion system protein

NC_010717
(Xanthomonas oryzae PXO99A)

1e-37

162) S58_72190
( YP_007516770.1 )

type III secretion system protein YscR

NC_020453
(Bradyrhizobium oligotrophicum S58)

1e-37

163) hrcR
( YP_005630680.1 )

type III secretion protein HrcR

NC_017267
(Xanthomonas oryzae BLS256)

2e-37

164) fliP
( YP_005371584.1 )

type III secretion system protein

NC_017030
(Corallococcus coralloides DSM 2259)

2e-37

165) xsaW
( YP_003375994.1 )

xanthomonas secretion apparatus protein

NC_013722
(Xanthomonas albilineans GPE PC73)

2e-37

166) MYSTI_02838
( YP_007359838.1 )

type III secretion system protein

NC_020126
(Myxococcus stipitatus DSM 14675)

3e-37

167) Marme_1071
( YP_004312182.1 )

Yop virulence translocation R

NC_015276
(Marinomonas mediterranea MMB-1)

4e-37

168) STAUR_3046
( YP_003952665.1 )

type III secretion system inner membrane p family protein

NC_014623
(Stigmatella aurantiaca DW4/3-1)

7e-37

169) hrcR
( NP_791222.3 )

type III secretion protein HrcR

NC_004578
(Pseudomonas syringae DC3000)

1e-36

170) MXAN_2447
( YP_630667.1 )

type III secretion system protein

NC_008095
(Myxococcus xanthus DK 1622)

1e-36

171) rhcR
( NP_768459.1 )

type III secretion system protein

NC_004463
(Bradyrhizobium japonicum USDA 110)

7e-37

172) rhcR
( YP_005612838.1 )

RhcR protein

NC_017249
(Bradyrhizobium japonicum USDA 6)

7e-37

173) hrcR
( YP_050174.1 )

type III secretion system protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

2e-36

174) sctR
( YP_003708474.1 )

type III secretion inner membrane protein SctR

NC_014225
(Waddlia chondrophila WSU 86-1044)

2e-36

175) PC1_2212
( YP_003017787.1 )

Yop virulence translocation R

NC_012917
(Pectobacterium carotovorum PC1)

3e-36

176) PCC21_022910
( YP_006646947.1 )

type III secretion system protein

NC_018525
(Pectobacterium carotovorum PCC21)

3e-36

177) hrcR
( YP_003774221.1 )

type III secretion HrcR transmembrane protein

NC_014323
(Herbaspirillum seropedicae SmR1)

4e-36

178) Pmen_0046
( YP_001185552.1 )

type III secretion system protein

NC_009439
(Pseudomonas mendocina ymp)

5e-36

179) LILAB_19925
( YP_004666965.1 )

type III secretion system protein

NC_015711
(Myxococcus fulvus HW-1)

6e-36

180) Dalk_1007
( YP_002430178.1 )

flagellar biosynthetic protein FliP

NC_011768
(Desulfatibacillum alkenivorans AK-01)

1e-35

181) REMIM1_PE00285
( YP_008368039.1 )

type III secretion system FliP/YscR family protein

NC_021909
(Rhizobium etli Mim1)

1e-35

182) rscR
( YP_006322231.1 )

type III secretion protein RscR

NC_017911
(Pseudomonas fluorescens A506)

4e-35

183) Dret_0584
( YP_003197459.1 )

flagellar biosynthetic protein FliP

NC_013223
(Desulfohalobium retbaense DSM 5692)

6e-35

184) fliP
( YP_780479.1 )

flagellar biosynthesis protein FliP

NC_008435
(Rhodopseudomonas palustris BisA53)

7e-35

185) fliP
( YP_006915428.1 )

flagellar biosynthesis protein FliP

NC_018868
(Simiduia agarivorans SA1)

7e-35

186) hrcR
( YP_003883246.1 )

type III secretion inner membrane protein

NC_014500
(Dickeya dadantii 3937)

9e-35

187) fliP
( YP_002129765.1 )

flagellar biosynthesis protein FliP

NC_011144
(Phenylobacterium zucineum HLK1)

9e-35

188) hrcR
( YP_273544.2 )

type III secretion system protein

NC_005773
(Pseudomonas syringae 1448A)

1e-34

189) Dd1591_1885
( YP_003004214.1 )

type III secretion system protein

NC_012912
(Dickeya zeae Ech1591)

1e-34

190) DaAHT2_1718
( YP_003691029.1 )

flagellar biosynthetic protein FliP

NC_014216
(Desulfurivibrio alkaliphilus AHT2)

1e-34

191) Ser39006_2919
( YP_008523301.1 )

Yop virulence translocation R

NC_022268
(Serratia sp. ATCC 39006)

1e-34

192) Plav_2568
( YP_001413834.1 )

flagellar biosynthetic protein FliP

NC_009719
(Parvibaculum lavamentivorans DS-1)

2e-34

193) HrcR
( YP_234300.1 )

type III secretion system protein

NC_007005
(Pseudomonas syringae B728a)

3e-34

194) spaP
( YP_001907833.1 )

surface presentation of antigens protein SpaP

NC_010694
(Erwinia tasmaniensis Et1/99)

3e-34

195) JCM7686_1775
( YP_008404643.1 )

type III secretion protein

NC_022041
(Paracoccus aminophilus JCM 7686)

3e-34

196) H650_14845
( YP_008108769.1 )

hypothetical protein

NC_021500
(Enterobacter sp. R4-368)

3e-34

197) fliP
( YP_006762434.1 )

flagellar biosynthesis protein, protein export component FliP

NC_018645
(Desulfobacula toluolica Tol2)

5e-34

198) EAM_2659
( YP_003539726.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

5e-34

199) spaP1
( YP_003530143.1 )

surface presentation of antigens protein SpaP

NC_013961
(Erwinia amylovora CFBP1430)

5e-34

200) Dd586_1882
( YP_003333446.1 )

Yop virulence translocation R

NC_013592
(Dickeya dadantii Ech586)

6e-34

201) fliP
( YP_347281.1 )

flagellar biosynthesis protein FliP

NC_007492
(Pseudomonas fluorescens Pf0-1)

1e-33

202) fliP
( YP_006716878.1 )

flagellar biosynthesis protein FliP

NC_007498
(Pelobacter carbinolicus DSM 2380)

1e-33

203) Deba_2315
( YP_003808271.1 )

flagellar biosynthetic protein FliP

NC_014365
(Desulfarculus baarsii DSM 2075)

2e-33

204) fliP
( YP_004303272.1 )

flagellar transport protein FliP

NC_015259
(Polymorphum gilvum SL003B-26A1)

9e-34

205) fliP
( YP_007710437.1 )

flagellar biosynthesis protein FliP

NC_020912
(Pseudomonas aeruginosa B136-33)

2e-33

206) fliP
( YP_006483676.1 )

flagellar biosynthesis protein FliP

NC_018080
(Pseudomonas aeruginosa DK2)

2e-33

207) fliP
( YP_002441550.1 )

flagellar biosynthesis protein FliP

NC_011770
(Pseudomonas aeruginosa LESB58)

2e-33

208) fliP
( YP_005976268.1 )

flagellar biosynthesis protein FliP

NC_017548
(Pseudomonas aeruginosa M18)

2e-33

209) fliP
( YP_005980573.1 )

flagellar biosynthesis protein

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

2e-33

210) fliP
( NP_250137.1 )

flagellar biosynthesis protein FliP

NC_002516
(Pseudomonas aeruginosa PAO1)

2e-33

211) M062_07750
( YP_008131995.1 )

flagellar biosynthesis protein FliP

NC_021577
(Pseudomonas aeruginosa RP73)

2e-33

212) fliP
( YP_791806.1 )

flagellar biosynthesis protein FliP

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

2e-33

213) fliP
( YP_275528.1 )

flagellar biosynthesis protein FliP

NC_005773
(Pseudomonas syringae 1448A)

2e-33

214) fliP
( YP_236514.1 )

flagellar biosynthesis protein FliP

NC_007005
(Pseudomonas syringae B728a)

2e-33

215) fliP
( NP_791795.1 )

flagellar biosynthetic protein FliP

NC_004578
(Pseudomonas syringae DC3000)

2e-33

216) PSEBR_a1491
( YP_004352690.1 )

flagellar biosynthetic protein

NC_015379
(Pseudomonas brassicacearum NFM421)

3e-33

217) fliP
( YP_005206995.1 )

protein FliP

NC_016830
(Pseudomonas fluorescens F113)

3e-33

218) spaP
( NP_902294.1 )

surface presentation of antigens protein SpaP

NC_005085
(Chromobacterium violaceum ATCC 12472)

3e-33

219) fliP
( YP_007657206.1 )

flagellar biosynthesis protein FliP

NC_020829
(Pseudomonas denitrificans ATCC 13867)

3e-33

220) fliP
( YP_007998982.1 )

flagellar biosynthetic protein FliP

NC_021237
(Pseudomonas fluorescens CHA0)

3e-33

221) fliP
( YP_258777.2 )

flagellar biosynthesis protein FliP

NC_004129
(Pseudomonas protegens Pf-5)

3e-33

222) Desgi_2217
( YP_007945322.1 )

flagellar biosynthetic protein FliP

NC_021184
(Desulfotomaculum gibsoniae DSM 7213)

3e-33

223) fliP
( YP_002796342.1 )

flagellar biosynthesis protein FliP

NC_012559
(Laribacter hongkongensis HLHK9)

4e-33

224) fliP
( YP_004846442.1 )

flagellar biosynthetic protein FliP

NC_016002
(Pseudogulbenkiania sp. NH8B)

4e-33

225) fliP
( YP_006325174.1 )

flagellar biosynthetic protein FliP

NC_017911
(Pseudomonas fluorescens A506)

4e-33

226) fliP
( YP_001349235.1 )

flagellar biosynthesis protein FliP

NC_009656
(Pseudomonas aeruginosa PA7)

5e-33

227) Atc_1493
( YP_004748842.1 )

flagellar biosynthesis protein fliP

NC_015850
(Acidithiobacillus caldus SM-1)

5e-33

228) Marme_3223
( YP_004314275.1 )

flagellar biosynthetic protein FliP

NC_015276
(Marinomonas mediterranea MMB-1)

5e-33

229) fliP
( YP_004832777.1 )

flagellar biosynthesis protein FliP

NC_015975
(Lactobacillus ruminis ATCC 27782)

7e-33

230) fliP
( YP_359852.1 )

flagellar biosynthesis protein FliP

NC_007503
(Carboxydothermus hydrogenoformans Z-2901)

1e-32

231) fliP
( YP_609306.1 )

flagellar biosynthesis protein FliP

NC_008027
(Pseudomonas entomophila L48)

1e-32

232) mlr8766
( NP_106869.1 )

type III secretion system protein

NC_002678
(Mesorhizobium loti MAFF303099)

8e-33

233) fliP
( YP_001212626.1 )

flagellar biosynthesis protein FliP

NC_009454
(Pelotomaculum thermopropionicum SI)

8e-33

234) fliP
( YP_007398170.1 )

flagellar biosynthesis protein FliP

NC_020209
(Pseudomonas poae RE*1-1-14)

9e-33

235) fliP
( YP_008112455.1 )

flagellar biosynthesis protein FliP

NC_021505
(Pseudomonas putida NBRC 14164)

9e-33

236) fliP
( YP_001682992.1 )

flagellar biosynthesis protein FliP

NC_010338
(Caulobacter sp. K31)

9e-33

237) fliP
( YP_002873959.1 )

flagellar biosynthesis protein FliP

NC_012660
(Pseudomonas fluorescens SBW25)

9e-33

238) fliP
( YP_007030862.1 )

flagellar biosynthetic protein FliP

NC_019670
(Pseudomonas sp. UW4)

9e-33

239) Hore_16720
( YP_002509417.1 )

flagellar biosynthetic protein FliP

NC_011899
(Halothermothrix orenii H 168)

1e-32

240) MXAN_5647
( YP_633786.1 )

type III secretion system protein

NC_008095
(Myxococcus xanthus DK 1622)

1e-32

241) rhcR
( NP_444164.1 )

type III secretion system protein

NC_000914
(Sinorhizobium fredii NGR234)

2e-32

242) MDS_1862
( YP_004379645.1 )

flagellar biosynthesis protein FliP

NC_015410
(Pseudomonas mendocina NK-01)

2e-32

243) fliP
( YP_001188299.1 )

flagellar biosynthesis protein FliP

NC_009439
(Pseudomonas mendocina ymp)

2e-32

244) fliP
( YP_001750532.1 )

flagellar biosynthesis protein FliP

NC_010501
(Pseudomonas putida W619)

2e-32

245) fliP
( YP_877989.1 )

flagellar biosynthesis protein FliP

NC_008593
(Clostridium novyi NT)

2e-32

246) Psefu_1935
( YP_004474002.1 )

flagellar biosynthetic protein FliP

NC_015556
(Pseudomonas fulva 12-X)

2e-32

247) L483_24060
( YP_008096573.1 )

flagellar biosynthesis protein FliP

NC_021491
(Pseudomonas putida H8234)

2e-32

248) Desca_1786
( YP_004497545.1 )

flagellar biosynthetic protein FliP

NC_015565
(Desulfotomaculum carboxydivorans CO-1-SRB)

2e-32

249) fliP
( YP_008104325.1 )

flagellar biosynthesis protein FliP

NC_021499
(Pseudomonas resinovorans NBRC 106553)

3e-32

250) Entcl_1801
( YP_003941341.1 )

flagellar biosynthetic protein FliP

NC_014618
(Enterobacter cloacae SCF1)

3e-32

251) fliP
( YP_003496926.1 )

flagellar transport protein FliP

NC_013939
(Deferribacter desulfuricans SSM1)

4e-32

252) SFHH103_04305
( YP_006575326.1 )

hypothetical protein

NC_018294
(Sinorhizobium fredii HH103)

4e-32

253) USDA257_p02850
( YP_006529157.1 )

putative translocation protein y4yL

NC_018179
(Sinorhizobium fredii USDA 257)

4e-32

254) fliP
( YP_001113731.1 )

flagellar biosynthesis protein FliP

NC_009253
(Desulfotomaculum reducens MI-1)

4e-32

255) fliP
( YP_003072909.1 )

flagellar biosynthesis protein FliP

NC_012997
(Teredinibacter turnerae T7901)

6e-32

256) fliP
( YP_002297129.1 )

flagellar biosynthesis protein FliP

NC_011420
(Rhodospirillum centenum SW)

1e-31

257) fliP
( YP_001670143.1 )

flagellar biosynthesis protein FliP

NC_010322
(Pseudomonas putida GB-1)

1e-31

258) fliP
( YP_007230563.1 )

flagellar biosynthesis protein FliP

NC_019905
(Pseudomonas putida PC9)

1e-31

259) Daud_1753
( YP_001717881.1 )

flagellar biosynthetic protein FliP

NC_010424
(Candidatus Desulforudis audaxviator MP104C)

6e-32

260) Rta_29680
( YP_004620091.1 )

translocation protein in type III secretion, membrane protein

NC_015677
(Ramlibacter tataouinensis TTB310)

8e-32

261) fliP
( YP_001266852.1 )

flagellar biosynthesis protein FliP

NC_009512
(Pseudomonas putida F1)

8e-32

262) YSA_08109
( YP_006388272.1 )

flagellar biosynthesis protein FliP

NC_017986
(Pseudomonas putida ND6)

8e-32

263) fliP
( YP_005929380.1 )

protein FliP

NC_017530
(Pseudomonas putida BIRD-1)

1e-31

264) fliP
( YP_006532961.1 )

flagellar biosynthesis protein FliP

NC_018220
(Pseudomonas putida DOT-T1E)

1e-31

265) fliP
( NP_746469.1 )

flagellar biosynthesis protein FliP

NC_002947
(Pseudomonas putida KT2440)

1e-31

266) PPS_3758
( YP_004703179.1 )

flagellar biosynthesis protein FliP

NC_015733
(Pseudomonas putida S16)

1e-31

267) KKY_1854
( YP_004899615.1 )

flagellar biosynthesis protein FliP

NC_016078
(Pelagibacterium halotolerans B2)

2e-31

268) fliP
( YP_004375656.1 )

flagellar biosynthesis protein FliP

NC_015391
(Carnobacterium sp. 17-4)

2e-31

269) Desru_1250
( YP_004544810.1 )

flagellar biosynthetic protein FliP

NC_015589
(Desulfotomaculum ruminis DSM 2154)

2e-31

270) H650_09085
( YP_008107643.1 )

flagellar biosynthesis protein FliP

NC_021500
(Enterobacter sp. R4-368)

2e-31

271) fliP
( YP_001907927.1 )

flagellar biosynthesis protein FliP

NC_010694
(Erwinia tasmaniensis Et1/99)

2e-31

272) D782_1687
( YP_007339871.1 )

flagellar biosynthetic protein FliP

NC_020063
(Enterobacteriaceae bacterium FGI 57)

2e-31

273) fliP
( YP_587429.1 )

flagellar biosynthesis protein FliP

NC_007974
(Cupriavidus metallidurans CH34)

3e-31

274) fliP
( YP_006342565.1 )

flagellar biosynthesis protein FliP

NC_017933
(Cronobacter sakazakii ES15)

3e-31

275) CSSP291_05910
( YP_007440068.1 )

flagellar biosynthesis protein FliP

NC_020260
(Cronobacter sakazakii Sp291)

3e-31

276) fliP
( YP_003211028.1 )

flagellar biosynthetic protein fliP

NC_013282
(Cronobacter turicensis z3032)

3e-31

277) fliP
( YP_001452577.1 )

flagellar biosynthesis protein FliP

NC_009792
(Citrobacter koseri ATCC BAA-895)

4e-31

278) lfiP
( YP_003363875.1 )

flagellar export/assembly protein

NC_013716
(Citrobacter rodentium ICC168)

4e-31

279) fliP
( YP_001437348.1 )

flagellar biosynthesis protein FliP

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

4e-31

280) spaP
( YP_005207205.1 )

protein SpaP

NC_016830
(Pseudomonas fluorescens F113)

5e-31

281) M301_1012
( YP_003673973.1 )

flagellar biosynthetic protein FliP

NC_014207
(Methylotenera versatilis 301)

5e-31

282) fliP
( YP_005803031.1 )

flagellar biosynthetic protein FliP

NC_017390
(Erwinia pyrifoliae DSM 12163)

5e-31

283) fliP
( YP_002649124.1 )

flagellar biosynthesis protein FliP

NC_012214
(Erwinia pyrifoliae Ep1/96)

5e-31

284) fliP
( YP_005819171.1 )

flagellar biosynthesis protein FliP

NC_017445
(Erwinia sp. Ejp617)

5e-31

285) hrcR
( YP_001984354.1 )

type III secretion system protein

NC_010996
(Rhizobium etli CIAT 652)

5e-31

286) fliP
( YP_002604938.1 )

protein FliP

NC_012108
(Desulfobacterium autotrophicum HRM2)

1e-30

287) fliP
( YP_003041460.1 )

flagellar biosynthetic protein flip precursor

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

1e-30

288) fliP
( YP_003711940.1 )

flagellar biosynthesis protein

NC_014228
(Xenorhabdus nematophila ATCC 19061)

1e-30

289) fliP
( YP_003365583.1 )

flagellar biosynthetic protein FliP

NC_013716
(Citrobacter rodentium ICC168)

1e-30

290) fliP
( YP_003538571.1 )

flagellar biosynthetic protein

NC_013971
(Erwinia amylovora ATCC 49946)

1e-30

291) fliP1
( YP_003530859.1 )

flagellar biosynthetic protein FliP

NC_013961
(Erwinia amylovora CFBP1430)

1e-30

292) fliP
( YP_005801745.1 )

flagellar biosynthetic protein FliP

NC_017390
(Erwinia pyrifoliae DSM 12163)

1e-30

293) fliP
( YP_002647972.1 )

flagellar biosynthetic protein FliP

NC_012214
(Erwinia pyrifoliae Ep1/96)

1e-30

294) fliP
( YP_005816715.1 )

Flagellar biosynthetic protein FliP

NC_017445
(Erwinia sp. Ejp617)

1e-30

295) fliP
( YP_008266182.1 )

flagellar biosynthesis protein FliP

NC_021820
(Salmonella enterica 08-1736)

1e-30

296) fliP
( YP_005237949.1 )

flagellar biosynthesis protein FliP

NC_016856
(Salmonella enterica 14028S)

1e-30

297) fliP
( YP_005397341.1 )

flagellar biosynthetic protein FliP

NC_017046
(Salmonella enterica 798)

1e-30

298) fliP
( YP_008254817.1 )

flagellar biosynthesis protein FliP

NC_021814
(Salmonella enterica CFSAN001921)

1e-30

299) STMMW_19591
( YP_005232998.1 )

flagellar biosynthetic protein FliP

NC_016854
(Salmonella enterica D23580)

1e-30

300) fliP
( NP_460932.1 )

flagellar biosynthesis protein FliP

NC_003197
(Salmonella enterica LT2)

1e-30

301) fliP
( YP_005181802.1 )

flagellar biosynthetic protein FliP

NC_016810
(Salmonella enterica SL1344)

1e-30

302) fliP
( YP_005242887.1 )

flagellar biosynthesis protein FliP

NC_016857
(Salmonella enterica ST4/74)

1e-30

303) fliP
( YP_005247696.1 )

flagellar biosynthesis protein FliP

NC_016860
(Salmonella enterica T000240)

1e-30

304) fliP
( YP_007902356.1 )

flagellar biosynthesis protein FliP

NC_021151
(Salmonella enterica U288)

1e-30

305) fliP
( YP_005252485.1 )

flagellar biosynthesis protein FliP

NC_016863
(Salmonella enterica UK-1)

1e-30

306) fliP
( YP_008112706.1 )

flagellar biosynthesis protein FliP

NC_021505
(Pseudomonas putida NBRC 14164)

8e-31

307) fliP
( YP_003742044.1 )

flagellar biosynthesis protein

NC_014306
(Erwinia billingiae Eb661)

8e-31

308) fliP
( NP_929205.1 )

flagellar biosynthesis protein FliP

NC_005126
(Photorhabdus luminescens TTO1)

9e-31

309) fliP
( YP_512120.1 )

flagellar biosynthesis protein FliP

NC_007802
(Jannaschia sp. CCS1)

2e-30

310) NT01EI_2431
( YP_002933836.1 )

flagellar biosynthetic protein FliP, putative

NC_012779
(Edwardsiella ictaluri 93-146)

2e-30

311) TOPB45_1333
( YP_004628342.1 )

flagellar biosynthetic protein FliP

NC_015682
(Thermodesulfobacterium geofontis OPB45)

2e-30

312) fliP
( YP_001177259.1 )

flagellar biosynthesis protein FliP

NC_009436
(Enterobacter sp. 638)

2e-30

313) fliP
( YP_008106948.1 )

flagellar biosynthesis protein FliP

NC_021500
(Enterobacter sp. R4-368)

2e-30

314) lfiP
( YP_006094582.1 )

lateral flagellar export/assembly protein (FliP-like)

NC_017626
(Escherichia coli 042)

2e-30

315) fliP
( YP_001742352.1 )

flagellar biosynthesis protein FliP

NC_010498
(Escherichia coli SMS-3-5)

2e-30

316) fliP
( YP_002411025.1 )

flagellar biosynthesis protein FliP

NC_011751
(Escherichia coli UMN026)

2e-30

317) A464_2127
( YP_008322722.1 )

Flagellar biosynthesis protein FliP

NC_021870
(Salmonella bongori N268-08)

2e-30

318) fliP
( YP_004730660.1 )

flagellar biosynthetic protein FliP

NC_015761
(Salmonella bongori NCTC 12419)

2e-30

319) fliP
( YP_002226128.1 )

flagellar biosynthesis protein FliP

NC_011274
(Salmonella enterica 287/91)

2e-30

320) SBOV20391
( YP_008505882.1 )

flagellar biosynthetic protein FliP

NC_022241
(Salmonella enterica 3114)

2e-30

321) fliP
( YP_008247887.1 )

flagellar biosynthesis protein FliP

NC_021810
(Salmonella enterica 41578)

2e-30

322) SU5_02582
( YP_006088206.1 )

Flagellar biosynthesis protein FliP

NC_017623
(Salmonella enterica B182)

2e-30

323) fliP
( YP_008481487.1 )

flagellar biosynthetic protein flip precursor

NC_022221
(Salmonella enterica CDC1983-67)

2e-30

324) fliP
( YP_008308242.1 )

flagellar biosynthesis protein FliP

NC_021844
(Salmonella enterica CFSAN000189)

2e-30

325) fliP
( YP_007470075.1 )

flagellar biosynthesis protein FliP

NC_020307
(Salmonella enterica CFSAN001992)

2e-30

326) fliP
( YP_008261244.1 )

flagellar biosynthesis protein FliP

NC_021818
(Salmonella enterica CFSAN002050)

2e-30

327) fliP
( YP_008253121.1 )

flagellar biosynthesis protein FliP

NC_021812
(Salmonella enterica CFSAN002069)

2e-30

328) STY2187
( NP_456540.1 )

flagellar biosynthetic protein FliP

NC_003198
(Salmonella enterica CT18)

2e-30

329) fliP
( YP_002215107.1 )

flagellar biosynthesis protein FliP

NC_011205
(Salmonella enterica CT_02021853)

2e-30

330) fliP
( YP_002115013.1 )

flagellar biosynthesis protein FliP

NC_011094
(Salmonella enterica CVM19633)

2e-30

331) STBHUCCB_9660
( YP_005216542.1 )

Flagellar biosynthetic protein fliP

NC_016832
(Salmonella enterica P-stx-12)

2e-30

332) fliP
( YP_002243159.1 )

flagellar biosynthesis protein FliP

NC_011294
(Salmonella enterica P125109)

2e-30

333) fliP
( YP_002637320.1 )

flagellar biosynthesis protein FliP

NC_012125
(Salmonella enterica RKS4594)

2e-30

334) fliP
( YP_005213029.1 )

flagellar biosynthetic protein flip precursor

NC_016831
(Salmonella enterica RKS5078)

2e-30

335) fliP
( YP_001570011.1 )

flagellar biosynthesis protein FliP

NC_010067
(Salmonella enterica RSK2980)

2e-30

336) fliP
( YP_008381167.1 )

flagellar biosynthesis protein FliP

NC_021984
(Salmonella enterica S06004)

2e-30

337) fliP
( YP_216971.1 )

flagellar biosynthesis protein FliP

NC_006905
(Salmonella enterica SC-B67)

2e-30

338) fliP
( YP_001587417.1 )

flagellar biosynthesis protein FliP

NC_010102
(Salmonella enterica SGSC4150; SPB7)

2e-30

339) fliP
( YP_002041244.1 )

flagellar biosynthesis protein FliP

NC_011080
(Salmonella enterica SL254)

2e-30

340) fliP
( YP_002046030.1 )

flagellar biosynthesis protein FliP

NC_011083
(Salmonella enterica SL476)

2e-30

341) fliP
( YP_002146044.1 )

flagellar biosynthesis protein FliP

NC_011149
(Salmonella enterica SL483)

2e-30

342) fliP
( NP_804727.1 )

flagellar biosynthesis protein FliP

NC_004631
(Salmonella enterica Ty2)

2e-30

343) fliP
( YP_007925244.1 )

flagellar biosynthesis protein FliP

NC_021176
(Salmonella enterica Ty21a)

2e-30

344) SN31241_30780
( YP_008360994.1 )

Flagellar biosynthetic protein fliP

NC_021902
(Salmonella enterica USMARC-S3124.1)

2e-30

345) CCALI_00613
( YP_008088580.1 )

flagellar biosynthetic protein FliP

NC_021487
(Chthonomonas calidirosea T49)

3e-30

346) ETAC_10205
( YP_007629522.1 )

Flagellar biosynthesis protein FliP

NC_020796
(Edwardsiella tarda C07-087)

3e-30

347) fliP
( YP_003296198.1 )

flagellar biosynthesis pathway protein FliP

NC_013508
(Edwardsiella tarda EIB202)

3e-30

348) fliP
( YP_005699542.1 )

Flagellar biosynthesis protein FliP

NC_017309
(Edwardsiella tarda FL6-60)

3e-30

349) fliP
( YP_003468603.1 )

flagellar biosynthesis protein

NC_013892
(Xenorhabdus bovienii SS-2004)

3e-30

350) fliP
( YP_001726333.1 )

flagellar biosynthesis protein FliP

NC_010468
(Escherichia coli ATCC 8739)

3e-30

351) fliP
( YP_004593337.1 )

flagellar biosynthesis protein FliP

NC_015663
(Enterobacter aerogenes KCTC 2190)

4e-30

352) SerAS9_3041
( YP_004506421.1 )

flagellar biosynthetic protein FliP

NC_015567
(Serratia plymuthica AS9)

4e-30

353) SerAS12_3042
( YP_004501468.1 )

flagellar biosynthetic protein FliP

NC_015566
(Serratia sp. AS12)

4e-30

354) SerAS13_3044
( YP_006025883.1 )

flagellar biosynthetic protein FliP

NC_017573
(Serratia sp. AS13)

4e-30

355) fliP1
( YP_006137309.1 )

Flagellar biosynthesis protein

NC_017644
(Escherichia coli NA114)

4e-30

356) D781_2730
( YP_007345166.1 )

flagellar biosynthetic protein FliP

NC_020064
(Serratia marcescens FGI94)

4e-30

357) fliP
( YP_008138959.1 )

flagellar biosynthetic protein flip

NC_021591
(Serratia odorifera 4Rx13)

5e-30

358) fliP
( YP_008159817.1 )

flagellar biosynthesis protein FliP

NC_021659
(Serratia plymuthica S13)

5e-30

359) fliP
( YP_008398277.1 )

flagellar biosynthetic protein

NC_022000
(Proteus mirabilis BB2000)

5e-30

360) fliP
( YP_002151371.1 )

flagellar biosynthetic protein

NC_010554
(Proteus mirabilis HI4320)

5e-30

361) fliP
( YP_008230983.1 )

flagellar biosynthesis protein FliP

NC_021741
(Serratia liquefaciens ATCC 27592)

5e-30

362) lfiP
( YP_003232796.1 )

putative lateral flagellar biosynthesis protein

NC_013364
(Escherichia coli 11128)

5e-30

363) fliP
( YP_003227339.1 )

flagellar biosynthesis protein FliP

NC_013361
(Escherichia coli 11368)

5e-30

364) EKO11_3667
( YP_005279305.1 )

flagellar biosynthetic protein FliP

NC_016902
(Escherichia coli KO11FL)

5e-30

365) fliP2
( YP_006162587.1 )

flagellar biosynthesis protein FliP

NC_017660
(Escherichia coli KO11FL)

5e-30

366) fliP
( YP_008563399.1 )

flagellar biosynthesis protein FliP

NC_022364
(Escherichia coli LY180)

5e-30

367) lfiP
( YP_006123038.1 )

lateral flagellar export/assembly protein

NC_017635
(Escherichia coli W)

5e-30

368) fliP2
( YP_006171701.1 )

flagellar biosynthesis protein FliP

NC_017664
(Escherichia coli W)

5e-30

369) ST548_p6298
( YP_007388300.1 )

Flagellar biosynthesis protein FliP

NC_020181
(Enterobacter aerogenes EA1509E)

6e-30

370) Pat9b_2399
( YP_004116257.1 )

flagellar biosynthetic protein FliP

NC_014837
(Pantoea sp. At-9b)

1e-29

371) fliP
( YP_003931431.1 )

flagellar biosynthetic protein fliP

NC_014562
(Pantoea vagans C9-1)

1e-29

372) fliP
( YP_007406771.1 )

flagellar biosynthetic protein FliP

NC_020211
(Serratia marcescens WW4)

8e-30

373) spaP
( YP_007030625.1 )

surface presentation of antigens protein

NC_019670
(Pseudomonas sp. UW4)

1e-29

374) fliP
( YP_001479186.1 )

flagellar biosynthesis protein FliP

NC_009832
(Serratia proteamaculans 568)

2e-29

375) fliP
( YP_574016.1 )

flagellar biosynthesis protein FliP

NC_007963
(Chromohalobacter salexigens DSM 3043)

2e-29

376) fliP
( YP_003883615.1 )

flagellar biosynthesis protein fliP

NC_014500
(Dickeya dadantii 3937)

2e-29

377) Dd586_1528
( YP_003333101.1 )

flagellar biosynthetic protein FliP

NC_013592
(Dickeya dadantii Ech586)

2e-29

378) fliP
( YP_002141671.1 )

flagellar biosynthesis protein FliP

NC_011147
(Salmonella enterica AKU12601)

2e-29

379) fliP
( YP_150183.1 )

flagellar biosynthetic protein FliP

NC_006511
(Salmonella enterica ATCC 9150)

2e-29

380) Dd1591_1566
( YP_003003899.1 )

flagellar biosynthetic protein FliP

NC_012912
(Dickeya zeae Ech1591)

3e-29

381) fliP
( YP_315368.1 )

flagellar biosynthesis protein FliP

NC_007404
(Thiobacillus denitrificans ATCC 25259)

3e-29

382) Tmar_0992
( YP_004101832.1 )

flagellar biosynthetic protein FliP

NC_014831
(Thermaerobacter marianensis DSM 12885)

5e-29

383) fliP
( YP_614938.1 )

flagellar biosynthesis protein FliP

NC_008044
(Ruegeria sp. TM1040)

6e-29

384) fliP
( YP_004589901.1 )

type III protein exporter membrane protein

NC_015662
(Buchnera aphidicola host: Cinara tujafilina)

8e-29

385) fliP
( YP_531396.1 )

flagellar biosynthesis protein FliP

NC_007925
(Rhodopseudomonas palustris BisB18)

9e-29

386) fliP
( NP_902797.1 )

flagellar biosynthesis protein FliP

NC_005085
(Chromobacterium violaceum ATCC 12472)

9e-29

387) S70_18345
( YP_006218162.1 )

flagellar biosynthesis protein FliP

NC_017731
(Providencia stuartii MRSN 2154)

2e-28

388) fliP
( YP_317744.1 )

flagellar biosynthesis protein FliP

NC_007406
(Nitrobacter winogradskyi Nb-255)

3e-28

389) fliP
( YP_001408145.1 )

flagellar biosynthesis protein FliP

NC_009715
(Campylobacter curvus 525.92)

3e-28

390) Tlie_0100
( YP_004931943.1 )

flagellar biosynthetic protein FliP

NC_016148
(Thermovirga lienii DSM 17291)

3e-28

391) fliP
( YP_576672.1 )

flagellar biosynthesis protein FliP

NC_007964
(Nitrobacter hamburgensis X14)

4e-28

392) fliP
( YP_561083.1 )

flagellar biosynthesis protein FliP

NC_007954
(Shewanella denitrificans OS217)

6e-28

393) PSPPH_2535
( YP_274731.1 )

type III secretion system protein

NC_005773
(Pseudomonas syringae 1448A)

7e-28

394) fliP
( YP_001241367.1 )

flagellar biosynthesis protein FliP

NC_009485
(Bradyrhizobium sp. BTAi1)

1e-27

395) fliP
( YP_001206945.1 )

flagellar biosynthesis protein FliP

NC_009445
(Bradyrhizobium sp. ORS278)

1e-27

396) Psest_1732
( YP_007239911.1 )

flagellar biosynthetic protein FliP

NC_019936
(Pseudomonas stutzeri RCH2)

1e-27

397) fliP
( YP_165466.1 )

flagellar biosynthesis protein FliP

NC_003911
(Ruegeria pomeroyi DSS-3)

1e-27

398) PSEBR_a2427
( YP_004353710.1 )

flagellar biosynthetic protein fliP

NC_015379
(Pseudomonas brassicacearum NFM421)

1e-27

399) fliP
( YP_006458384.1 )

flagellar biosynthesis protein FliP

NC_018028
(Pseudomonas stutzeri CCUG 29243)

2e-27

400) Thein_0183
( YP_004625032.1 )

flagellar biosynthetic protein FliP

NC_015681
(Thermodesulfatator indicus DSM 15286)

8e-28

401) fliP
( YP_005449752.1 )

flagellar biosynthesis protein FliP

NC_017082
(Bradyrhizobium sp. S23321)

9e-28

402) fliP
( YP_959252.1 )

flagellar biosynthesis protein FliP

NC_008740
(Marinobacter aquaeolei VT8)

9e-28

403) fliP
( YP_005429221.1 )

flagellar biosynthesis protein

NC_017067
(Marinobacter hydrocarbonoclasticus ATCC 49840)

9e-28

404) fliP
( YP_005093325.1 )

flagellar biosynthesis protein FliP

NC_016745
(Oceanimonas sp. GK1)

9e-28

405) fliP
( NP_772456.1 )

flagellar biosynthesis protein FliP

NC_004463
(Bradyrhizobium japonicum USDA 110)

2e-27

406) fliP
( YP_007512251.1 )

flagellar transport protein FliP

NC_020453
(Bradyrhizobium oligotrophicum S58)

2e-27

407) fliP
( YP_001173069.1 )

flagellar biosynthetic protein FliP

NC_009434
(Pseudomonas stutzeri A1501)

2e-27

408) fliP
( YP_004714930.1 )

flagellar biosynthesis protein FliP

NC_015740
(Pseudomonas stutzeri ATCC 17588)

2e-27

409) fliP-2
( YP_005939308.1 )

flagellar biosynthesis protein FliP

NC_017532
(Pseudomonas stutzeri DSM 4166)

2e-27

410) SAR116_0822
( YP_003551149.1 )

flagellar biosynthetic protein FliP

NC_014010
(Candidatus Puniceispirillum marinum IMCC1322)

2e-27

411) HP15_2312
( YP_005886004.1 )

flagellar biosynthesis protein FliP

NC_017506
(Marinobacter adhaerens HP15)

2e-27

412) PT7_0779
( YP_004415943.1 )

flagellar biosynthesis protein FliP

NC_015458
(Pusillimonas sp. T7-7)

2e-27

413) fliP
( YP_005608752.1 )

flagellar biosynthetic protein

NC_017249
(Bradyrhizobium japonicum USDA 6)

3e-27

414) fliP
( NP_949227.1 )

flagellar biosynthesis protein FliP

NC_005296
(Rhodopseudomonas palustris CGA009)

3e-27

415) fliP
( YP_001993384.1 )

flagellar biosynthesis protein FliP

NC_011004
(Rhodopseudomonas palustris TIE-1)

3e-27

416) Mnod_5540
( YP_002500685.1 )

flagellar biosynthetic protein FliP

NC_011894
(Methylobacterium nodulans ORS 2060)

3e-27

417) fliP
( NP_860223.1 )

flagellar biosynthesis protein FliP

NC_004917
(Helicobacter hepaticus ATCC 51449)

3e-27

418) fliP
( YP_436281.1 )

flagellar biosynthesis protein FliP

NC_007645
(Hahella chejuensis KCTC 2396)

4e-27

419) fliP
( YP_004467968.1 )

flagellar biosynthesis protein FliP

NC_015554
(Alteromonas sp. SN2)

5e-27

420) fliP
( YP_002535429.1 )

flagellar biosynthesis protein FliP

NC_011978
(Thermotoga neapolitana DSM 4359)

5e-27

421) fliP
( YP_487384.1 )

flagellar biosynthesis protein FliP

NC_007778
(Rhodopseudomonas palustris HaA2)

6e-27

422) M446_5157
( YP_001771916.1 )

flagellar biosynthetic protein FliP

NC_010511
(Methylobacterium sp. 4-46)

6e-27

423) fliP
( YP_004866021.1 )

flagellar biosynthetic protein FliP

NC_016026
(Micavibrio aeruginosavorus ARL-13)

6e-27

424) MYSTI_06240
( YP_007363197.1 )

type III secretion system protein

NC_020126
(Myxococcus stipitatus DSM 14675)

6e-27

425) fliP
( YP_006747081.1 )

flagellar biosynthesis protein FliP

NC_018632
(Alteromonas macleodii ATCC 27126)

7e-27

426) fliP
( YP_006824044.1 )

flagellar biosynthesis protein FliP

NC_018692
(Alteromonas macleodii Black Sea 11)

7e-27

427) fliP
( YP_006798070.1 )

flagellar biosynthesis protein FliP

NC_018678
(Alteromonas macleodii English Channel 673)

7e-27

428) fliP
( YP_568828.1 )

flagellar biosynthesis protein FliP

NC_007958
(Rhodopseudomonas palustris BisB5)

1e-26

429) Rpdx1_1458
( YP_004107813.1 )

flagellar biosynthetic protein FliP

NC_014834
(Rhodopseudomonas palustris DX-1)

1e-26

430) MU9_1792
( YP_007505211.1 )

Flagellar biosynthesis protein FliP

NC_020418
(Morganella morganii KT)

1e-26

431) fliP
( YP_006975941.1 )

flagellar biosynthesis protein FliP

NC_019393
(Alteromonas macleodii AltDE1)

1e-26

432) fliP
( YP_006801984.1 )

flagellar biosynthesis protein FliP

NC_018679
(Alteromonas macleodii Balearic Sea AD45)

1e-26

433) MADE_1005950
( YP_004426330.1 )

flagellar biosynthesis protein FliP

NC_011138
(Alteromonas macleodii Deep ecotype)

1e-26

434) fliP
( YP_008191968.1 )

flagellar biosynthesis protein FliP

NC_021716
(Alteromonas macleodii English Channel 615)

1e-26

435) fliP
( YP_008171083.1 )

flagellar biosynthesis protein FliP

NC_021710
(Alteromonas macleodii Ionian Sea U4)

1e-26

436) fliP
( YP_008195492.1 )

flagellar biosynthesis protein FliP

NC_021717
(Alteromonas macleodii Ionian Sea U7)

1e-26

437) fliP
( YP_008175213.1 )

flagellar biosynthesis protein FliP

NC_021712
(Alteromonas macleodii Ionian Sea U8)

1e-26

438) fliP
( YP_008183049.1 )

flagellar biosynthesis protein FliP

NC_021714
(Alteromonas macleodii Ionian Sea UM4b)

1e-26

439) fliP
( YP_008178996.1 )

flagellar biosynthesis protein FliP

NC_021713
(Alteromonas macleodii Ionian Sea UM7)

1e-26

440) CYCME_0921
( YP_008373613.1 )

Flagellar biosynthesis pathway, component FliP

NC_021917
(Cycloclasticus zancles 7-ME)

1e-26

441) fliP
( YP_006557355.1 )

flagellar biosynthetic protein fliP

NC_018268
(Marinobacter sp. BSs20148)

1e-26

442) Mahau_0870
( YP_004462890.1 )

flagellar biosynthetic protein FliP

NC_015520
(Mahella australiensis 50-1 BON)

1e-26

443) fliP
( YP_006523608.1 )

flagellar biosynthesis protein FliP

NC_018177
(Pseudomonas stutzeri DSM 10701)

1e-26

444) fliP
( YP_001466589.1 )

flagellar biosynthesis protein FliP

NC_009802
(Campylobacter concisus 13826)

6e-27

445) fliP
( YP_001697294.1 )

flagellar biosynthesis protein FliP

NC_010382
(Lysinibacillus sphaericus C3-41)

8e-27

446) fliP
( YP_007600043.1 )

flagellar biosynthesis protein

NC_020555
(Helicobacter cinaedi ATCC BAA-847)

2e-26

447) fliP
( YP_006234595.1 )

flagellar biosynthesis protein FliP

NC_017761
(Helicobacter cinaedi PAGU611)

2e-26

448) BN865_13040
( YP_008473941.1 )

Flagellar biosynthesis protein FliP

NC_022132
(Campylobacter coli 76339)

2e-26

449) fliP
( YP_008533662.1 )

flagellar biosynthesis protein FliP

NC_022347
(Campylobacter coli CVM N29710)

2e-26

450) CPK_ORF00233
( YP_005662606.1 )

type III secretion apparatus protein, YscR/HrcR family

NC_017285
(Chlamydophila pneumoniae LPCoLN)

2e-26

451) Halha_0669
( YP_007314735.1 )

flagellar biosynthetic protein FliP

NC_019978
(Halobacteroides halobius DSM 5150)

3e-26

452) fliP
( YP_005934493.1 )

flagellar biosynthetic protein FliP precursor

NC_017531
(Pantoea ananatis AJ13355)

3e-26

453) fliP
( YP_003520600.1 )

FliP

NC_013956
(Pantoea ananatis LMG 20103)

3e-26

454) fliP
( YP_005195227.1 )

flagellar biosynthetic protein FliP

NC_016816
(Pantoea ananatis LMG 5342)

3e-26

455) PAGR_g1736
( YP_005992475.1 )

flagellar biosynthetic protein FliP

NC_017554
(Pantoea ananatis PA13)

3e-26

456) fliP
( YP_049816.1 )

flagellar biosynthesis protein FliP

NC_004547
(Pectobacterium atrosepticum SCRI1043)

3e-26

457) fliP
( YP_002729321.1 )

flagellar biosynthetic protein FliP

NC_012438
(Sulfurihydrogenibium azorense Az-Fu1)

3e-26

458) B565_1109
( YP_004391761.1 )

flagellar biosynthetic protein FliP

NC_015424
(Aeromonas veronii B565)

4e-26

459) fliP
( YP_001398263.1 )

flagellar biosynthesis protein FliP

NC_009707
(Campylobacter jejuni 269.97)

4e-26

460) Sulba_1139
( YP_006404010.1 )

flagellar biosynthetic protein FliP

NC_018002
(Sulfurospirillum barnesii SES-3)

4e-26

461) CP1046
( NP_445583.1 )

type III secretion system protein

NC_002179
(Chlamydophila pneumoniae AR39)

4e-26

462) yscR
( NP_225020.1 )

type III secretion system protein

NC_000922
(Chlamydophila pneumoniae CWL029)

4e-26

463) yscR
( NP_300882.1 )

type III secretion system protein

NC_002491
(Chlamydophila pneumoniae J138)

4e-26

464) yscR
( NP_877126.1 )

type III secretion system protein

NC_005043
(Chlamydophila pneumoniae TW-183)

4e-26

465) fliP
( YP_001000505.1 )

flagellar biosynthesis protein FliP

NC_008787
(Campylobacter jejuni 81-176)

5e-26

466) ICDCCJ07001_789
( YP_004066342.1 )

flagellar biosynthesis protein

NC_014802
(Campylobacter jejuni ICDCCJ07001)

5e-26

467) B932_0505
( YP_006983043.1 )

protein FliP

NC_019396
(Gluconobacter oxydans H24)

5e-26

468) Fbal_1045
( YP_003912328.1 )

flagellar biosynthetic protein FliP

NC_014541
(Ferrimonas balearica DSM 9799)

6e-26

469) M635_08385
( YP_008294568.1 )

flagellar biosynthesis protein FliP

NC_021834
(Campylobacter jejuni 32488)

6e-26

470) fliP
( YP_001482343.1 )

flagellar biosynthesis protein FliP

NC_009839
(Campylobacter jejuni 81116)

6e-26

471) fliP
( YP_005656134.1 )

flagellar biosynthetic protein FliP

NC_017279
(Campylobacter jejuni IA3902)

6e-26

472) fliP
( YP_005657749.1 )

Flagellar biosynthetic protein FliP

NC_017280
(Campylobacter jejuni M1)

6e-26

473) fliP
( YP_002344227.1 )

flagellar biosynthesis protein FliP

NC_002163
(Campylobacter jejuni NCTC 11168)

6e-26

474) fliP
( YP_006632976.1 )

flagellar biosynthesis protein FliP

NC_018521
(Campylobacter jejuni NCTC 11168-BN148)

6e-26

475) fliP
( YP_006857870.1 )

flagellar biosynthesis protein FliP

NC_018709
(Campylobacter jejuni PT14)

6e-26

476) fliP
( YP_178909.1 )

flagellar biosynthesis protein FliP

NC_003912
(Campylobacter jejuni RM1221)

6e-26

477) fliP
( YP_005659435.1 )

Flagellar biosynthesis protein fliP

NC_017281
(Campylobacter jejuni S3)

6e-26

478) fliP
( YP_008562164.1 )

flagellar biosynthesis protein FliP

NC_022362
(jejuni jejuni 00-2425)

6e-26

479) fliP
( YP_008540417.1 )

flagellar biosynthesis protein FliP

NC_022352
(jejuni jejuni 00-2426)

6e-26

480) fliP
( YP_008538743.1 )

flagellar biosynthesis protein FliP

NC_022351
(jejuni jejuni 00-2538)

6e-26

481) fliP
( YP_008542141.1 )

flagellar biosynthesis protein FliP

NC_022353
(jejuni jejuni 00-2544)

6e-26

482) W5S_1792
( YP_006282755.1 )

Flagellar biosynthetic protein FliP

NC_017845
(Pectobacterium sp. SCC3193)

6e-26

483) fliP
( YP_004689048.1 )

flagellar biosynthetic protein FliP

NC_015730
(Roseobacter litoralis Och 149)

6e-26

484) fliP
( YP_393530.1 )

flagellar biosynthesis protein FliP

NC_007575
(Sulfurimonas denitrificans ATCC 33889)

6e-26

485) PC1_2585
( YP_003018152.1 )

flagellar biosynthetic protein FliP

NC_012917
(Pectobacterium carotovorum PC1)

7e-26

486) Sdel_1122
( YP_003304180.1 )

flagellar biosynthetic protein FliP

NC_013512
(Sulfurospirillum deleyianum DSM 6946)

7e-26

487) fliP
( YP_662597.1 )

flagellar biosynthesis protein FliP

NC_008228
(Pseudoalteromonas atlantica T6c)

8e-26

488) fliP
( YP_003259269.1 )

flagellar biosynthesis protein FliP

NC_013421
(Pectobacterium wasabiae WPP163)

9e-26

489) Mrad2831_5050
( YP_001757691.1 )

flagellar biosynthetic protein FliP

NC_010505
(Methylobacterium radiotolerans JCM 2831)

1e-25

490) spaP
( YP_002143407.1 )

surface presentation of antigens protein SpaP

NC_011147
(Salmonella enterica AKU12601)

1e-25

491) spaP
( YP_151917.1 )

secretory protein (associated with virulence)

NC_006511
(Salmonella enterica ATCC 9150)

1e-25

492) Saut_1271
( YP_003892331.1 )

flagellar biosynthetic protein FliP

NC_014506
(Sulfurimonas autotrophica DSM 16294)

1e-25

493) fliP
( YP_001676432.1 )

flagellar biosynthesis protein FliP

NC_010334
(Shewanella halifaxensis HAW-EB4)

2e-25

494) fliP
( YP_855914.1 )

flagellar biosynthesis protein FliP

NC_008570
(Aeromonas hydrophila ATCC 7966)

2e-25

495) fliP
( YP_008042621.1 )

flagellar biosynthesis protein FliP

NC_021290
(Aeromonas hydrophila ML09-119)

2e-25

496) fliP
( YP_001141197.1 )

flagellar biosynthesis protein FliP

NC_009348
(Aeromonas salmonicida A449)

2e-25

497) PCC21_026900
( YP_006647346.1 )

flagellar biosynthesis protein FliP

NC_018525
(Pectobacterium carotovorum PCC21)

2e-25

498) spaP
( YP_001569178.1 )

surface presentation of antigens protein SpaP

NC_010067
(Salmonella enterica RSK2980)

2e-25

499) sctR
( NP_829799.1 )

type III secretion system protein

NC_003361
(Chlamydophila caviae GPIC)

2e-25

500) fliP
( YP_007372210.1 )

flagellar biosynthetic protein FliP

NC_020134
(Clostridium stercorarium DSM 8532)

2e-25

501) fliP
( YP_007678668.1 )

FliP

NC_020887
(Clostridium stercorarium DSM 8532)

2e-25

502) fliP
( YP_004872445.1 )

flagellar biosynthesis protein FliP

NC_016041
(Glaciecola nitratireducens FR1064)

2e-25

503) fliP
( YP_007545115.1 )

flagellar biosynthesis protein FliP

NC_020514
(Glaciecola psychrophila 170)

2e-25

504) fliP
( YP_004073913.1 )

flagellar biosynthesis protein

NC_014810
(Helicobacter felis ATCC 49179)

2e-25

505) fliP
( YP_006822033.1 )

flagellar biosynthetic protein

NC_018691
(Alcanivorax dieselolei B5)

2e-25

506) SE451236_20545
( YP_008267096.1 )

type III secretion system protein

NC_021820
(Salmonella enterica 08-1736)

2e-25

507) spaP
( YP_005238999.1 )

surface presentation of antigens protein SpaP

NC_016856
(Salmonella enterica 14028S)

2e-25

508) spaP
( YP_002227634.1 )

surface presentation of antigens protein SpaP

NC_011274
(Salmonella enterica 287/91)

2e-25

509) SBOV29161
( YP_008506738.1 )

hypothetical protein

NC_022241
(Salmonella enterica 3114)

2e-25

510) spaP
( YP_008248698.1 )

type III secretion system protein SpaP

NC_021810
(Salmonella enterica 41578)

2e-25

511) spaP
( YP_005398253.1 )

type III secretion system secretory apparatus

NC_017046
(Salmonella enterica 798)

2e-25

512) SU5_03371
( YP_006088978.1 )

Type III secretion inner membrane protein

NC_017623
(Salmonella enterica B182)

2e-25

513) spaP
( YP_008482453.1 )

secretory protein

NC_022221
(Salmonella enterica CDC1983-67)

2e-25

514) SEEB0189_05720
( YP_008307495.1 )

type III secretion system protein

NC_021844
(Salmonella enterica CFSAN000189)

2e-25

515) CFSAN001921_02625
( YP_008253933.1 )

type III secretion system protein

NC_021814
(Salmonella enterica CFSAN001921)

2e-25

516) spaP
( YP_007473531.1 )

type III secretion system protein SpaP

NC_020307
(Salmonella enterica CFSAN001992)

2e-25

517) CFSAN002050_20750
( YP_008262021.1 )

type III secretion system protein

NC_021818
(Salmonella enterica CFSAN002050)

2e-25

518) CFSAN002069_17820
( YP_008252324.1 )

type III secretion system protein

NC_021812
(Salmonella enterica CFSAN002069)

2e-25

519) spaP
( YP_002216859.1 )

surface presentation of antigens protein SpaP

NC_011205
(Salmonella enterica CT_02021853)

2e-25

520) spaP
( YP_002115842.1 )

surface presentation of antigens protein SpaP

NC_011094
(Salmonella enterica CVM19633)

2e-25

521) STMMW_28521
( YP_005233879.1 )

secretory protein (associated with virulence)

NC_016854
(Salmonella enterica D23580)

2e-25

522) spaP
( NP_461811.1 )

surface presentation of antigens protein SpaP

NC_003197
(Salmonella enterica LT2)

2e-25

523) spaP
( YP_002244803.1 )

surface presentation of antigens protein SpaP

NC_011294
(Salmonella enterica P125109)

2e-25

524) spaP
( YP_002638466.1 )

surface presentation of antigens protein SpaP

NC_012125
(Salmonella enterica RKS4594)

2e-25

525) spaP
( YP_005213998.1 )

secretory protein (associated with virulence)

NC_016831
(Salmonella enterica RKS5078)

2e-25

526) I137_13760
( YP_008382153.1 )

type III secretion system protein

NC_021984
(Salmonella enterica S06004)

2e-25

527) spaP
( YP_217809.1 )

surface presentation of antigens protein SpaP

NC_006905
(Salmonella enterica SC-B67)

2e-25

528) spaP
( YP_001589767.1 )

surface presentation of antigens protein SpaP

NC_010102
(Salmonella enterica SGSC4150; SPB7)

2e-25

529) spaP
( YP_005182758.1 )

type III secretion system secretory apparatus

NC_016810
(Salmonella enterica SL1344)

2e-25

530) spaP
( YP_002042131.1 )

surface presentation of antigens protein SpaP

NC_011080
(Salmonella enterica SL254)

2e-25

531) spaP
( YP_002046850.1 )

surface presentation of antigens protein SpaP

NC_011083
(Salmonella enterica SL476)

2e-25

532) spaP
( YP_002147787.1 )

surface presentation of antigens protein SpaP

NC_011149
(Salmonella enterica SL483)

2e-25

533) spaP
( YP_005243871.1 )

surface presentation of antigens protein SpaP

NC_016857
(Salmonella enterica ST4/74)

2e-25

534) spaP
( YP_005248635.1 )

surface presentation of antigens protein SpaP

NC_016860
(Salmonella enterica T000240)

2e-25

535) spaP
( YP_007904012.1 )

type III secretion system protein SpaP

NC_021151
(Salmonella enterica U288)

2e-25

536) spaP
( YP_005253379.1 )

surface presentation of antigens protein SpaP

NC_016863
(Salmonella enterica UK-1)

2e-25

537) SN31241_39820
( YP_008361897.1 )

Surface presentation of antigens protein spaP

NC_021902
(Salmonella enterica USMARC-S3124.1)

2e-25

538) fliP
( YP_680677.1 )

flagellar biosynthesis protein FliP

NC_008209
(Roseobacter denitrificans OCh 114)

2e-25

539) Theth_0696
( YP_004659877.1 )

flagellar biosynthetic protein FliP

NC_015707
(Thermotoga thermarum DSM 5069)

2e-25

540) fliP
( YP_002575556.1 )

flagellar biosynthesis protein FliP

NC_012039
(Campylobacter lari RM2100)

3e-25

541) fliP
( YP_006838078.1 )

flagellar transport protein FliP

NC_018697
(Cycloclasticus sp. P1; MCCC 1A01040)

3e-25

542) fliP
( YP_003579610.1 )

flagellar biosynthetic protein FliP

NC_014034
(Rhodobacter capsulatus SB 1003)

3e-25

543) fliP
( YP_005093167.1 )

flagellar biosynthesis protein FliP

NC_016745
(Oceanimonas sp. GK1)

4e-25

544) fliP
( YP_004918416.1 )

flagellar biosynthetic protein FliP Precursor

NC_016112
(Methylomicrobium alcaliphilum 20Z)

4e-25

545) fliP
( YP_001167849.1 )

flagellar biosynthesis protein FliP

NC_009428
(Rhodobacter sphaeroides ATCC 17025)

4e-25

546) fliP
( YP_191929.1 )

flagellar biosynthesis protein FliP

NC_006677
(Gluconobacter oxydans 621H)

5e-25

547) spaP
( NP_457284.1 )

secretory protein (associated with virulence)

NC_003198
(Salmonella enterica CT18)

5e-25

548) STBHUCCB_29360
( YP_005218436.1 )

Surface presentation of antigens protein spaP

NC_016832
(Salmonella enterica P-stx-12)

5e-25

549) spaP
( NP_806493.1 )

surface presentation of antigens protein SpaP

NC_004631
(Salmonella enterica Ty2)

5e-25

550) spaP
( YP_007927063.1 )

surface presentation of antigens protein SpaP

NC_021176
(Salmonella enterica Ty21a)

5e-25

551) swp_5086
( YP_002314288.1 )

Flagellar transport protein FliP

NC_011566
(Shewanella piezotolerans WP3)

7e-25

552) fliP
( YP_001885056.1 )

flagellar biosynthetic protein FliP

NC_010674
(Clostridium botulinum Eklund 17B)

8e-25

553) fliP
( YP_001499953.1 )

flagellar biosynthesis protein FliP

NC_009901
(Shewanella pealeana ATCC 700345)

1e-24

554) fliP
( YP_003516248.1 )

flagellar biosynthesis protein

NC_013949
(Helicobacter mustelae 12198)

1e-24

555) fliP
( YP_757170.1 )

flagellar biosynthesis protein FliP

NC_008347
(Maricaulis maris MCS10)

1e-24

556) fliP
( YP_002436626.1 )

flagellar biosynthesis protein FliP

NC_011769
(Desulfovibrio vulgaris Miyazaki F)

1e-24

557) A464_2914
( YP_008323508.1 )

Type III secretion inner membrane protein

NC_021870
(Salmonella bongori N268-08)

8e-25

558) spaP
( YP_004731330.1 )

virulence associated secretory protein

NC_015761
(Salmonella bongori NCTC 12419)

8e-25

559) Sulku_1113
( YP_004059976.1 )

flagellar biosynthetic protein flip

NC_014762
(Sulfuricurvum kujiense DSM 16994)

2e-24

560) fliP
( YP_514993.1 )

type III secretion system protein

NC_007899
(Chlamydophila felis Fe/C-56)

2e-24

561) fliP
( YP_006722048.1 )

flagellar biosynthesis protein FliP

NC_007517
(Geobacter metallireducens GS-15)

2e-24

562) fliP
( YP_001982204.1 )

flagellar biosynthesis protein FliP

NC_010995
(Cellvibrio japonicus Ueda107)

3e-24

563) fliP
( YP_001787969.1 )

flagellar biosynthesis protein FliP

NC_010520
(Clostridium botulinum Loch Maree)

3e-24

564) BN341_p1310
( YP_007043253.1 )

Flagellar biosynthesis protein FliP

NC_019674
(Helicobacter heilmannii ASB1.4)

4e-24

565) fliP
( YP_007893385.1 )

flagellar biosynthetic protein

NC_021149
(Azotobacter vinelandii CA)

4e-24

566) fliP
( YP_007898434.1 )

flagellar biosynthetic protein

NC_021150
(Azotobacter vinelandii CA6)

4e-24

567) fliP
( YP_002799575.1 )

flagellar biosynthetic protein

NC_012560
(Azotobacter vinelandii DJ)

4e-24

568) B649_04650
( YP_007527939.1 )

hypothetical protein

NC_020505
(uncultured Sulfuricurvum sp. RIFRC-1)

5e-24

569) Mmol_0937
( YP_003048373.1 )

flagellar biosynthetic protein FliP

NC_012968
(Methylotenera mobilis JLW8)

5e-24

570) Rahaq2_2559
( YP_005200551.1 )

flagellar biosynthetic protein FliP

NC_016818
(Rahnella aquatilis CIP 78.65)

6e-24

571) fliP
( YP_005402318.1 )

flagellar biosynthesis protein FliP

NC_017047
(Rahnella aquatilis HX2)

6e-24

572) Rahaq_2499
( YP_004213233.1 )

flagellar biosynthetic protein FliP

NC_015061
(Rahnella sp. Y9602)

6e-24

573) Celgi_0475
( YP_004599565.1 )

flagellar biosynthetic protein FliP

NC_015671
(Cellvibrio gilvus ATCC 13127)

7e-24

574) Celf_0690
( YP_004452217.1 )

flagellar biosynthetic protein FliP

NC_015514
(Cellulomonas fimi ATCC 484)

1e-23

575) PP1Y_AT34509
( YP_004535993.1 )

flagellar biosynthetic protein FliP

NC_015580
(Novosphingobium sp. PP1Y)

1e-23

576) fliP
( YP_007640886.1 )

flagellar biosynthesis protein FliP

NC_020802
(Psychromonas sp. CNPT3)

1e-23

577) Sked_31060
( YP_003315837.1 )

flagellar biosynthetic protein FliP

NC_013521
(Sanguibacter keddieii DSM 10542)

1e-23

578) B595_1074
( YP_006733619.1 )

fliP family protein

NC_018619
(Chlamydia psittaci 84/55)

1e-23

579) B711_1071
( YP_006740016.1 )

fliP family protein

NC_018625
(Chlamydia psittaci CP3)

1e-23

580) B600_1069
( YP_006735770.1 )

fliP family protein

NC_018621
(Chlamydia psittaci VS225)

1e-23

581) RSPPHO_01389
( YP_005416985.1 )

flagellar transport protein FliP

NC_017059
(Rhodospirillum photometricum DSM 122)

1e-23

582) fliP
( YP_001471824.1 )

flagellar biosynthesis protein FliP

NC_009831
(Shewanella sediminis HAW-EB3)

7e-24

583) HBZC1_14080
( YP_004608106.1 )

flagellar biosynthesis protein FliP

NC_015674
(Helicobacter bizzozeronii CIII-1)

8e-24

584) H04402_02743
( YP_005679281.1 )

flagellar biosynthesis protein FliP

NC_017299
(Clostridium botulinum H04402 065)

8e-24

585) fliP
( YP_001782265.1 )

flagellar biosynthesis protein FliP

NC_010516
(Clostridium botulinum Okra)

8e-24

586) fliP
( YP_002863640.1 )

flagellar biosynthesis protein FliP

NC_012658
(Clostridium botulinum 657)

9e-24

587) fliP
( YP_001384893.1 )

flagellar biosynthesis protein FliP

NC_009697
(Clostridium botulinum ATCC 19397)

9e-24

588) fliP
( YP_001255147.1 )

flagellar biosynthesis protein FliP

NC_009495
(Clostridium botulinum ATCC 3502)

9e-24

589) fliP
( YP_001388362.1 )

flagellar biosynthesis protein FliP

NC_009698
(Clostridium botulinum Hall)

9e-24

590) fliP
( YP_002805152.1 )

flagellar biosynthesis protein FliP

NC_012563
(Clostridium botulinum Kyoto)

9e-24

591) fliP
( YP_005675545.1 )

flagellar biosynthetic protein FliP

NC_017297
(Clostridium botulinum 230613)

2e-23

592) fliP
( YP_001391949.1 )

flagellar biosynthesis protein FliP

NC_009699
(Clostridium botulinum Langeland)

2e-23

593) fliP
( YP_427914.1 )

flagellar biosynthesis protein FliP

NC_007643
(Rhodospirillum rubrum ATCC 11170)

2e-23

594) fliP
( YP_006049162.1 )

flagellar biosynthesis protein FliP

NC_017584
(Rhodospirillum rubrum F11)

2e-23

595) fliP
( YP_283989.1 )

flagellar biosynthesis protein FliP

NC_007298
(Dechloromonas aromatica RCB)

2e-23

596) fliP
( YP_562345.1 )

flagellar biosynthesis protein FliP

NC_007954
(Shewanella denitrificans OS217)

2e-23

597) fliP
( YP_664645.1 )

flagellar biosynthesis protein FliP

NC_008229
(Helicobacter acinonychis Sheeba)

3e-23

598) Rhom172_2117
( YP_004825856.1 )

flagellar biosynthetic protein FliP

NC_015966
(Rhodothermus marinus SG0.5JP17-172)

4e-23

599) fliP
( YP_006370539.1 )

flagellar biosynthetic protein FliP

NC_017956
(Tistrella mobilis KA081020-065)

4e-23

600) fliP
( YP_006765444.1 )

flagellar biosynthesis protein FliP

NC_018649
(Leptospirillum ferriphilum ML-04)

4e-23

601) fliP
( YP_928162.1 )

flagellar biosynthesis protein FliP

NC_008700
(Shewanella amazonensis SB2B)

4e-23

602) HPOK113_0695
( YP_007536809.1 )

flagellar biosynthesis protein FliP

NC_020508
(Helicobacter pylori OK113)

1e-22

603) fliP
( YP_005768321.1 )

flagellar biosynthesis protein FliP

NC_017359
(Helicobacter pylori Sat464)

1e-22

604) fliP
( YP_006225889.1 )

flagellar biosynthesis protein FliP

NC_017740
(Helicobacter pylori Shi169)

1e-22

605) fliP
( YP_005771256.1 )

flagellar biosynthesis protein FliP

NC_017361
(Helicobacter pylori SouthAfrica7)

6e-23

606) Rmar_0765
( YP_003290051.1 )

flagellar biosynthetic protein FliP

NC_013501
(Rhodothermus marinus DSM 4252)

6e-23

607) fliP
( YP_005775862.1 )

flagellar biosynthesis protein FliP

NC_017366
(Helicobacter pylori F32)

7e-23

608) fliP
( YP_001790062.1 )

flagellar biosynthesis protein FliP

NC_010524
(Leptothrix cholodnii SP-6)

7e-23

609) Desaci_3816
( YP_006468029.1 )

flagellar biosynthetic protein FliP

NC_018068
(Desulfosporosinus acidiphilus SJ4)

7e-23

610) fliP
( YP_005763615.1 )

flagellar biosynthetic protein FliP

NC_017355
(Helicobacter pylori v225d)

8e-23

611) Fbal_2331
( YP_003913608.1 )

flagellar biosynthetic protein FliP

NC_014541
(Ferrimonas balearica DSM 9799)

9e-23

612) fliP
( YP_005783661.1 )

Flagellar biosynthesis protein

NC_017374
(Helicobacter pylori 2017)

9e-23

613) fliP
( YP_005765193.1 )

Flagellar biosynthesis protein

NC_017357
(Helicobacter pylori 908)

9e-23

614) fliP
( YP_004987415.1 )

flagellar transport protein FliP

NC_016596
(Azospirillum brasilense Sp245)

9e-23

615) fliP
( YP_005793034.1 )

flagellar biosynthetic protein

NC_017382
(Helicobacter pylori 51)

9e-23

616) fliP
( YP_001235253.1 )

flagellar biosynthesis protein FliP

NC_009484
(Acidiphilium cryptum JF-5)

9e-23

617) fliP
( YP_004284609.1 )

flagellar biosynthetic protein FliP

NC_015186
(Acidiphilium multivorum AIU301)

9e-23

618) fliP
( YP_006219372.1 )

flagellar biosynthesis protein FliP

NC_017733
(Helicobacter pylori HUP-B14)

1e-22

619) fliP
( YP_008471673.1 )

flagellar biosynthetic protein FliP

NC_022130
(Helicobacter pylori SouthAfrica20)

1e-22

620) Sbal175_0426
( YP_006019027.1 )

flagellar biosynthetic protein FliP

NC_017571
(Shewanella baltica BA175)

1e-22

621) Sbal117_4142
( YP_006039292.1 )

flagellar biosynthetic protein FliP

NC_017579
(Shewanella baltica OS117)

1e-22

622) fliP
( YP_001052321.1 )

flagellar biosynthesis protein FliP

NC_009052
(Shewanella baltica OS155)

1e-22

623) fliP
( YP_005770013.1 )

flagellar biosynthetic protein FliP

NC_017360
(Helicobacter pylori 35A)

1e-22

624) fliP
( YP_007018934.1 )

flagellar biosynthesis protein FliP

NC_019563
(Helicobacter pylori Aklavik86)

1e-22

625) K750_05710
( YP_007982491.1 )

flagellar biosynthesis protein FliP

NC_021217
(Helicobacter pylori UM037)

1e-22

626) fliP
( YP_005785311.1 )

flagellar biosynthetic protein FliP

NC_017375
(Helicobacter pylori 83)

1e-22

627) fliP
( YP_005786841.1 )

flagellar biosynthesis protein FliP

NC_017376
(Helicobacter pylori Santal49)

1e-22

628) TOL_2496
( YP_007683132.1 )

flagellar biosynthetic protein FliP

NC_020888
(Thalassolituus oleivorans MIL-1)

1e-22

629) fliP
( NP_223343.1 )

flagellar biosynthesis protein FliP

NC_000921
(Helicobacter pylori J99)

1e-22

630) fliP
( YP_006222976.1 )

flagellar biosynthesis protein FliP

NC_017737
(Helicobacter cetorum MIT 00-7128)

2e-22

631) fliP
( YP_419973.1 )

flagellar biosynthesis protein FliP

NC_007626
(Magnetospirillum magneticum AMB-1)

2e-22

632) fliP
( YP_006221253.1 )

flagellar biosynthesis protein FliP

NC_017735
(Helicobacter cetorum MIT 99-5656)

2e-22

633) fliP
( YP_002134849.1 )

flagellar biosynthesis protein FliP

NC_011145
(Anaeromyxobacter sp. K)

2e-22

634) fliP
( YP_001910157.1 )

flagellar biosynthesis protein FliP

NC_010698
(Helicobacter pylori Shi470)

1e-22

635) fliP
( YP_005762174.1 )

flagellar biosynthesis protein FliP

NC_017354
(Helicobacter pylori 52)

1e-22

636) fliP
( YP_007017196.1 )

flagellar biosynthesis protein FliP

NC_019560
(Helicobacter pylori Aklavik117)

1e-22

637) fliP
( YP_003057436.1 )

flagellar biosynthesis protein FliP

NC_012973
(Helicobacter pylori B38)

1e-22

638) fliP
( YP_003728907.1 )

flagellar biosynthesis protein FliP

NC_014256
(Helicobacter pylori B8)

1e-22

639) fliP
( YP_005766806.1 )

flagellar biosynthesis protein FliP

NC_017358
(Helicobacter pylori Cuz20)

1e-22

640) fliP
( YP_005778930.1 )

flagellar biosynthesis protein FliP

NC_017368
(Helicobacter pylori F16)

1e-22

641) fliP
( YP_005774392.1 )

flagellar biosynthesis protein FliP

NC_017365
(Helicobacter pylori F30)

1e-22

642) fliP
( YP_005777421.1 )

flagellar biosynthesis protein FliP

NC_017367
(Helicobacter pylori F57)

1e-22

643) fliP
( YP_002266267.1 )

flagellar biosynthesis protein FliP

NC_011333
(Helicobacter pylori G27)

1e-22

644) fliP
( YP_627409.1 )

flagellar biosynthesis protein FliP

NC_008086
(Helicobacter pylori HPAG1)

1e-22

645) fliP
( YP_005781967.1 )

flagellar biosynthesis protein FliP

NC_017372
(Helicobacter pylori India7)

1e-22

646) fliP
( YP_005772819.1 )

flagellar biosynthesis protein FliP

NC_017362
(Helicobacter pylori Lithuania75)

1e-22

647) HPOK310_0676
( YP_007538310.1 )

flagellar biosynthesis protein FliP

NC_020509
(Helicobacter pylori OK310)

1e-22

648) fliP
( YP_002301330.1 )

flagellar biosynthesis protein FliP

NC_011498
(Helicobacter pylori P12)

1e-22

649) fliP
( YP_006228922.1 )

flagellar biosynthesis protein FliP

NC_017742
(Helicobacter pylori PeCan18)

1e-22

650) fliP
( YP_003926954.1 )

flagellar biosynthesis protein FliP

NC_014555
(Helicobacter pylori PeCan4)

1e-22

651) fliP
( YP_005788328.1 )

flagellar biosynthesis protein FliP

NC_017378
(Helicobacter pylori Puno120)

1e-22

652) fliP
( YP_005789888.1 )

flagellar biosynthesis protein FliP

NC_017379
(Helicobacter pylori Puno135)

1e-22

653) fliP
( YP_006227415.1 )

flagellar biosynthesis protein FliP

NC_017741
(Helicobacter pylori Shi112)

1e-22

654) fliP
( YP_006224302.1 )

flagellar biosynthesis protein FliP

NC_017739
(Helicobacter pylori Shi417)

1e-22

655) K747_07525
( YP_007979688.1 )

flagellar biosynthesis protein FliP

NC_021215
(Helicobacter pylori UM032)

1e-22

656) K751_03955
( YP_007983769.1 )

flagellar biosynthesis protein FliP

NC_021218
(Helicobacter pylori UM066)

1e-22

657) K748_00620
( YP_008336047.1 )

flagellar biosynthesis protein FliP

NC_021882
(Helicobacter pylori UM298)

1e-22

658) K749_02145
( YP_007980226.1 )

flagellar biosynthesis protein FliP

NC_021216
(Helicobacter pylori UM299)

1e-22

659) fliP
( YP_006338349.1 )

flagellar biosynthesis protein FliP

NC_017926
(Helicobacter pylori XZ274)

1e-22

660) fliP
( YP_003619080.1 )

flagellar biosynthetic protein FliP

NC_014125
(Legionella pneumophila 2300/99 Alcoy)

1e-22

661) lp12_1727
( YP_005186088.1 )

flagellar biosynthetic protein FliP

NC_016811
(Legionella pneumophila ATCC 43290)

1e-22

662) fliP
( YP_001250540.1 )

flagellar biosynthesis protein FliP

NC_009494
(Legionella pneumophila Corby)

1e-22

663) LPE509_01400
( YP_007567943.1 )

Flagellar biosynthesis protein FliP

NC_020521
(Legionella pneumophila Philadelphia 1)

1e-22

664) fliP
( YP_095815.1 )

flagellar biosynthesis protein FliP

NC_002942
(Legionella pneumophila Philadelphia 1)

1e-22

665) fliP
( YP_008063475.1 )

flagellar biosynthetic protein FliP

NC_021350
(Legionella pneumophila Thunder Bay)

1e-22

666) fliP
( YP_005780419.1 )

flagellar biosynthesis protein FliP

NC_017371
(Helicobacter pylori Gambia94/24)

3e-22

667) fliP
( YP_003050541.1 )

flagellar biosynthesis protein FliP

NC_012969
(Methylovorus glucosetrophus SIP3-4)

3e-22

668) Desor_4879
( YP_004972795.1 )

flagellar biosynthetic protein FliP

NC_016584
(Desulfosporosinus orientis DSM 765)

3e-22

669) fliP
( YP_004039211.1 )

flagellar biosynthetic protein flip

NC_014733
(Methylovorus sp. MP688)

4e-22

670) fliP
( YP_001184990.1 )

flagellar biosynthesis protein FliP

NC_009438
(Shewanella putrefaciens CN-32)

4e-22

671) fliP
( YP_961863.1 )

flagellar biosynthesis protein FliP

NC_008750
(Shewanella sp. W3-18-1)

4e-22

672) fliP
( YP_564662.1 )

flagellar biosynthesis protein FliP

NC_007954
(Shewanella denitrificans OS217)

5e-22

673) fliP
( YP_003168989.1 )

flagellar biosynthesis protein FliP

NC_013194
(Candidatus Accumulibacter phosphatis UW-1)

6e-22

674) fliP
( YP_891929.1 )

flagellar biosynthesis protein FliP

NC_008599
(Campylobacter fetus 82-40)

7e-22

675) fliP
( YP_002121320.1 )

flagellar biosynthesis protein FliP

NC_011126
(Hydrogenobaculum sp. Y04AAS1)

8e-22

676) fliP
( NP_908191.1 )

flagellar biosynthesis protein FliP

NC_005090
(Wolinella succinogenes DSM 1740)

1e-21

677) Desmer_3905
( YP_006623612.1 )

flagellar biosynthetic protein FliP

NC_018515
(Desulfosporosinus meridiei DSM 13257)

1e-21

678) fliP
( YP_006364962.1 )

flagellar transport protein FliP

NC_017955
(Modestobacter marinus BC501)

2e-21

679) fliP
( YP_001140278.1 )

flagellar biosynthesis protein FliP

NC_009348
(Aeromonas salmonicida A449)

2e-21

680) fliP
( YP_008546098.1 )

flagellar biosynthetic protein FliP

NC_022357
(Sulfuricella denitrificans skB26)

3e-21

681) fliP
( YP_617964.1 )

flagellar biosynthesis protein FliP

NC_008048
(Sphingopyxis alaskensis RB2256)

5e-21

682) Thimo_0280
( YP_007242780.1 )

flagellar biosynthetic protein FliP

NC_019940
(Thioflavicoccus mobilis 8321)

5e-21

683) Sulac_3139
( YP_005258257.1 )

flagellar biosynthetic protein FliP

NC_016884
(Sulfobacillus acidophilus DSM 10332)

5e-21

684) fliP
( YP_004720285.1 )

flagellar biosynthetic protein FliP

NC_015757
(Sulfobacillus acidophilus TPY)

5e-21

685) hscR
( YP_003811251.1 )

type III secretory pathway protein

NC_014366
(gamma proteobacterium HdN1)

6e-21

686) NAL212_0476
( YP_004293583.1 )

flagellar biosynthetic protein FliP

NC_015222
(Nitrosomonas sp. AL212)

9e-21

687) fliP
( YP_748247.1 )

flagellar biosynthesis protein FliP

NC_008344
(Nitrosomonas eutropha C91)

1e-20

688) EAT1b_2929
( YP_002887288.1 )

flagellar biosynthetic protein FliP

NC_012673
(Exiguobacterium sp. AT1b)

1e-20

689) fliP
( YP_001353121.1 )

flagellar biosynthesis protein FliP

NC_009659
(Janthinobacterium sp. Marseille)

1e-20

690) Fraau_2088
( YP_005378154.1 )

flagellar biosynthetic protein FliP

NC_017033
(Frateuria aurantia DSM 6220)

2e-20

691) fliP
( YP_003452985.1 )

flagellar biosynthetic protein

NC_013859
(Azospirillum sp. B510)

2e-20

692) Theco_2089
( YP_007213209.1 )

flagellar biosynthetic protein FliP

NC_019897
(Thermobacillus composti KWC4)

2e-20

693) fliP
( YP_003810708.1 )

flagellar transport protein FliP

NC_014366
(gamma proteobacterium HdN1)

3e-20

694) Ethha_2563
( YP_004092787.1 )

flagellar biosynthetic protein FliP

NC_014828
(Ethanoligenens harbinense YUAN-3)

4e-20

695) Q7A_2938
( YP_006297360.1 )

flagellar biosynthesis protein FliP

NC_017857
(Methylophaga sp. JAM1)

5e-20

696) fliP
( YP_944875.1 )

flagellar biosynthesis protein FliP

NC_008709
(Psychromonas ingrahamii 37)

2e-19

697) fliP
( YP_461382.1 )

flagellar biosynthesis protein FliP

NC_007759
(Syntrophus aciditrophicus SB)

2e-19

698) fliP
( YP_005446408.1 )

flagellar biosynthetic protein FliP

NC_017080
(Phycisphaera mikurensis NBRC 102666)

3e-19

699) fliP2
( YP_005041116.1 )

flagellar transport protein FliP

NC_016624
(Azospirillum lipoferum 4B)

3e-19

700) fliP
( YP_002296443.1 )

flagellar biosynthesis protein FliP

NC_011420
(Rhodospirillum centenum SW)

6e-19

701) Mpop_0498
( YP_001923211.1 )

flagellar biosynthetic protein FliP

NC_010725
(Methylobacterium populi BJ001)

6e-19

702) Mchl_0461
( YP_002419325.1 )

flagellar biosynthetic protein FliP

NC_011757
(Methylobacterium chloromethanicum CM4)

7e-19

703) fliP
( YP_002961572.1 )

flagellar biosynthesis protein FliP

NC_012808
(Methylobacterium extorquens AM1)

7e-19

704) fliP
( YP_003066210.1 )

flagellar biosynthesis protein FliP

NC_012988
(Methylobacterium extorquens DM4)

7e-19

705) Mext_0427
( YP_001637920.1 )

flagellar biosynthetic protein FliP

NC_010172
(Methylobacterium extorquens PA1)

8e-19

706) fliP
( YP_006564586.1 )

flagellar biosynthetic protein FliP

NC_018286
(Phaeobacter gallaeciensis 2.10)

2e-18

707) fliP
( YP_006574915.1 )

flagellar biosynthetic protein FliP

NC_018290
(Phaeobacter gallaeciensis DSM 17395)

2e-18

708) fliP
( YP_001680806.1 )

flagellar biosynthetic protein flip

NC_010337
(Heliobacterium modesticaldum Ice1)

1e-17

709) fliP
( YP_005951584.1 )

flagellar biosynthetic protein FliP

NC_017538
(Oligotropha carboxidovorans OM4)

2e-17

710) fliP
( YP_004633521.1 )

flagellar biosynthetic protein FliP

NC_015684
(Oligotropha carboxidovorans OM5)

2e-17

711) fliP
( YP_002288390.1 )

flagellar biosynthesis protein FliP

NC_011386
(Oligotropha carboxidovorans OM5; ATCC 49405)

2e-17

712) fliP
( YP_921955.1 )

flagellar biosynthesis protein FliP

NC_008699
(Nocardioides sp. JS614)

6e-17

713) fliP
( YP_001093504.1 )

flagellar biosynthesis protein FliP

NC_009092
(Shewanella loihica PV-4)

9e-17

714) Sput200_2731
( YP_006010601.1 )

flagellar biosynthetic protein FliP

NC_017566
(Shewanella putrefaciens 200)

1e-16

715) fliP
( YP_001184086.1 )

flagellar biosynthesis protein FliP

NC_009438
(Shewanella putrefaciens CN-32)

1e-16

716) fliP
( YP_962834.1 )

flagellar biosynthesis protein FliP

NC_008750
(Shewanella sp. W3-18-1)

1e-16

717) Sbal175_1440
( YP_006020023.1 )

flagellar biosynthetic protein FliP

NC_017571
(Shewanella baltica BA175)

1e-16

718) Sbal117_3054
( YP_006038236.1 )

flagellar biosynthetic protein FliP

NC_017579
(Shewanella baltica OS117)

1e-16

719) fliP
( YP_001051267.1 )

flagellar biosynthesis protein FliP

NC_009052
(Shewanella baltica OS155)

1e-16

720) fliP
( YP_001367123.1 )

flagellar biosynthesis protein FliP

NC_009665
(Shewanella baltica OS185)

1e-16

721) fliP
( YP_001555483.1 )

flagellar biosynthesis protein FliP

NC_009997
(Shewanella baltica OS195)

1e-16

722) fliP
( YP_002357377.1 )

flagellar biosynthesis protein FliP

NC_011663
(Shewanella baltica OS223)

1e-16

723) Sbal678_3069
( YP_005274268.1 )

flagellar biosynthetic protein FliP

NC_016901
(Shewanella baltica OS678)

1e-16

724) fliP
( YP_749883.1 )

flagellar biosynthesis protein FliP

NC_008345
(Shewanella frigidimarina NCIMB 400)

2e-16

725) fliP
( NP_718773.2 )

flagellar export protein FliP

NC_004347
(Shewanella oneidensis MR-1)

3e-16

726) fliP
( YP_868992.1 )

flagellar biosynthesis protein FliP

NC_008577
(Shewanella sp. ANA-3)

3e-16

727) fliP
( YP_733428.1 )

flagellar biosynthesis protein FliP

NC_008321
(Shewanella sp. MR-4)

3e-16

728) fliP
( YP_737415.1 )

flagellar biosynthesis protein FliP

NC_008322
(Shewanella sp. MR-7)

4e-16

729) fliP
( YP_268254.1 )

flagellar biosynthesis protein FliP

NC_003910
(Colwellia psychrerythraea 34H)

5e-16

730) MROS_2143
( YP_006528386.1 )

flagellar biosynthetic protein FliP

NC_018178
(Melioribacter roseus P3M-2)

1e-15

731) fliP
( YP_003448385.1 )

flagellar biosynthetic protein

NC_013854
(Azospirillum sp. B510)

3e-15

732) fliP1
( YP_005039023.1 )

flagellar transport protein FliP

NC_016622
(Azospirillum lipoferum 4B)

4e-15

733) fliP
( NP_902673.1 )

flagellar biosynthesis protein FliP

NC_005085
(Chromobacterium violaceum ATCC 12472)

5e-15

734) Q7C_1257
( YP_006293094.1 )

flagellar biosynthesis protein FliP

NC_017856
(Methylophaga sp. JAM7)

8e-15

735) fliP
( YP_127091.1 )

flagellar biosynthesis protein FliP

NC_006369
(Legionella pneumophila Lens)

1e-14

736) fliP
( YP_006505781.1 )

flagellar biosynthesis protein

NC_018139
(Legionella pneumophila Lorraine)

1e-14

737) fliP
( YP_006509053.1 )

flagellar biosynthesis protein

NC_018140
(Legionella pneumophila HL06041035)

2e-14

738) fliP
( NP_207479.1 )

flagellar biosynthesis protein FliP

NC_000915
(Helicobacter pylori 26695)

3e-14

739) Psefu_3045
( YP_004475103.1 )

flagellar biosynthetic protein FliP

NC_015556
(Pseudomonas fulva 12-X)

3e-14

740) fliP
( YP_003262607.1 )

flagellar biosynthesis protein FliP

NC_013422
(Halothiobacillus neapolitanus c2)

4e-14

741) fliP
( YP_002730497.1 )

flagellar biosynthetic protein FliP

NC_012440
(Persephonella marina EX-H1)

4e-14

742) Dsui_1746
( YP_005027972.1 )

flagellar biosynthetic protein FliP

NC_016616
(Dechlorosoma suillum PS)

5e-14

743) fliP
( YP_002607556.1 )

flagellar biosynthesis protein FliP

NC_012115
(Nautilia profundicola AmH)

7e-14

744) Calni_1332
( YP_004051403.1 )

flagellar biosynthetic protein flip

NC_014758
(Calditerrivibrio nitroreducens DSM 19672)

8e-14

745) fliP
( YP_344152.1 )

flagellar biosynthesis protein FliP

NC_007484
(Nitrosococcus oceani ATCC 19707)

3e-13

746) Nwat_0923
( YP_003760188.1 )

flagellar biosynthetic protein FliP

NC_014315
(Nitrosococcus watsonii C-113)

3e-13

747) ECBG_01258
( YP_007751372.1 )

flagellar biosynthetic protein FliP

NC_020995
(Enterococcus casseliflavus EC20)

9e-13

748) R2APBS1_2987
( YP_007591297.1 )

flagellar biosynthetic protein FliP

NC_020541
(Rhodanobacter sp. 2APBS1)

2e-10

749) fliP
( YP_001168934.1 )

flagellar biosynthesis protein FliP

NC_009428
(Rhodobacter sphaeroides ATCC 17025)

2e-10

750) Thivi_0368
( YP_006412562.1 )

flagellar biosynthetic protein FliP

NC_018012
(Thiocystis violascens DSM 198)

5e-10

751) Nhal_3616
( YP_003529026.1 )

flagellar biosynthetic protein FliP

NC_013960
(Nitrosococcus halophilus Nc 4)

5e-09

• Sequence Alignments

1) A1122_03785 in NC_017168


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  318 bits (1192),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  236
            MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

2) epaP in NC_010159


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  318 bits (1191),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%)

Query  1    MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60
            MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120
            VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180
            IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216
            MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

3) YPA_4012 in NC_008150


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  318 bits (1192),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  236
            MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

4) fliP1 in NC_005810


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  318 bits (1192),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  236
            MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

5) YPO0270 in NC_003143


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  318 bits (1191),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%)

Query  1    MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60
            MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120
            VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180
            IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216
            MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

6) YPD4_0235 in NC_017154


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  318 bits (1191),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%)

Query  1    MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60
            MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120
            VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180
            IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216
            MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

7) YPD8_0240 in NC_017160


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  318 bits (1191),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%)

Query  1    MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60
            MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120
            VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180
            IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216
            MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

8) y0530 in NC_004088


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  318 bits (1192),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  236
            MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

9) YPN_3397 in NC_008149


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  318 bits (1192),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  236
            MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

10) YPDSF_3700 in NC_009381


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  318 bits (1192),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  236
            MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

11) YPZ3_0233 in NC_014029


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  318 bits (1191),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%)

Query  1    MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60
            MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120
            VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180
            IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216
            MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

12) epaP in NC_009708


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  318 bits (1191),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%)

Query  1    MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60
            MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120
            VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180
            IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216
            MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

13) YPTB0327 in NC_006155


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  318 bits (1192),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  236
            MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

14) YPTS_0351 in NC_010634


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  318 bits (1192),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  236
            MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

15) YPK_3902 in NC_010465


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  318 bits (1192),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  236
            MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

16) YE105_C0338 in NC_015224


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  280 bits (1048),  Expect = 5e-77, Method: Compositional matrix adjust.
 Identities = 162/193 (84%), Positives = 183/193 (95%), Gaps = 0/193 (0%)

Query  24   MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL  83
            +VMGT+FLKLS+VFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDV+ARLQ+E L
Sbjct  24   VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEEL  83

Query  84   PNDLGALLYHIDEHALEPYRDFLQRNTDAAQVHFFNDIVQTKWPVRYRDTIKPNSLLILM  143
            +ND+GAL  +ID++AL PYRDFLQRNTD  QV FFNDIVQ KWP RYRD++KP+SLLILM
Sbjct  84   SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  144  PAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILIDG  203
            PAFTLSQL EAFKIGLLL+LPFVAIDLIVSNILLAMGMMMVSP+T+SLPFKLL+F+L+DG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  204  WGLLLGQLVGSYL  216
            W+L+LGQLVGSYL
Sbjct  204  WSLVLGQLVGSYL  216

17) Y11_35451 in NC_017564


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  278 bits (1039),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 161/193 (84%), Positives = 183/193 (95%), Gaps = 0/193 (0%)

Query  24   MVMGTSFLKLSIVLSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL  83
            +VMGT+FLKLS+V+SLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDV+ARLQ+E L
Sbjct  24   VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEEL  83

Query  84   PNDLGALLYHIDEHALEPYRDFLQRNTDAAQVHFFNDIVQTKWPVRYRDTIKPNSLLILM  143
            +ND+GAL  +ID++AL PYRDFLQRNTD  QV FFNDIVQ KWP RYRD++KP+SLLILM
Sbjct  84   SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  144  PAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILIDG  203
            PAFTLSQL EAFKIGLLL+LPFVAIDLIVSNILLAMGMMMVSP+T+SLPFKLL+F+L+DG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  204  WGLLLGQLVGSYL  216
            W+L+LGQLVGSYL
Sbjct  204  WSLVLGQLVGSYL  216

18) epaP in NC_021173


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  249 bits (930),  Expect = 9e-68, Method: Compositional matrix adjust.
 Identities = 139/215 (65%), Positives = 178/215 (83%), Gaps = 0/215 (0%)

Query  1    MSVLDQPVQLIVVLFALSILPLLMVLGSSFLKLAVVFALLRNALGTQQIPPNIALYGLAL  60
            M +L+ + QLI +LF LS+LPLL+V+G++FLKL+VVF+LLRNALG QQ+PPNIA+YGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  61   VLTLFIMAPVGLAIQDNLAEHPVQLDDKQFTQQVETTILAPYRDFLARNTARAQVRFFAD  120
            VLT+FIMAPVGL +Q  L ++ +  D   +++Q++   L PYRDFL RNT   QV FF D
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  121  IGHRTWPEPYRNRIPDDSLIVLIPAFAISQLIEAFKIGLLLFLPFVAIDLIVSNVLLAMG  180
            I +  WPE YR+ +  DSL++L+PAF++SQL EAFKIGLLLFLPFVAIDLIVSN+LLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  181  MMMVSPMTIALPLKLLVFVLINGWEKLLGQLVLSF  215
            MMMVSPMT++LP+KLLVFVL++GW  +LGQLV S+
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

19) ssaR in NC_012751


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  241 bits (900),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 160/215 (75%), Positives = 196/215 (92%), Gaps = 0/215 (0%)

Query  1    MELVNSSYElitllfllsifpllVVMGTCFLKLSVVFSLLRNALGVQQTPPNIAIYGLAL  60
            MEL+NSSY+LI+LLF+LS++PLLVVMGT FLKLSVVFSLLRNALGVQQ PPNIAIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  61   VLTIFIMAPVGLEVNESLKGEKLSQDFGTFVEQINSKALDPYRQFLLHNTSSEQINFFSD  120
            VLTIFIMAPVGL+V+  L+ E LS+D+G++ +QI+ +AL PYR+FL +NT  EQ+ FF+D
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  121  MIKNNWPKKYRDKVASDSLLILMPAFTVSQLIEAFKIGLLLYLPFVAIDLIVSNILLAmg  180
            +++N+WP +YRD V +DSLLILMPAFT+SQL EAFKIGLLL+LPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  181  mmmmspmTISLPFKILIFLLVGGWDMILGQLAGSY  215
            MMM+SPMT+SLPFK+L+F+LV+GW ++LGQL GSY
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

20) escR in NC_005085


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  241 bits (899),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 132/201 (66%), Positives = 172/201 (86%), Gaps = 0/201 (0%)

Query  15   FALSILPLLVVLGTSFLKLAVVFALLRNALGIQQIPPNIALYGLALILTLFIMAPIGLEI  74
            F LS+LPLLVV+GT+FLKL+VVF+LLRNALG+QQ+PPNIA+YGLAL+LT+FIMAP+GL++
Sbjct  15   FMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDV  74

Query  75   QDNLIAHPIKIESPAFIQQVESGVFTPYRVFLERNTAPEQVHFFADIGHQIWPEKYQQRI  134
            Q  L  + +  +  A+ +Q++   + PYR FL+RNT  EQV FF DI ++ WPE+Y++ +
Sbjct  75   QARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  135  PDNSLLVLMPAFTVSQLIEAFKIGLLLFLPFVAIDLVVSNVLLAMGMMMVSPMTISMPLK  194
              +SLL+LMPAFT+SQL EAFKIGLLLFLPFVAIDL+VSN+LLAMGMMMVSPMT+S+P+K
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  195  LLVFVLMNGWEKLLGQLVLSF  215
            LLVFVL++GW  +LGQLV S+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

21) SVI_2230 in NC_014012


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  240 bits (895),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 127/215 (60%), Positives = 185/215 (87%), Gaps = 0/215 (0%)

Query  1    MSVLDNPVQLIILLFCLSILPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLSL  60
            M +L+++ QLI LLF LS+LPL+ VMGT+FLKLS+V+S+LRNALG+QQ+PPN+AIYGL+L
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  61   ILTLFIMAPIGMEINDNLKVHPIVFDSANIIEQVNTLAIIPYRDFLEKNTSKTQLDFFAN  120
            +LT+FIMAP+G++++  L+ + +  D + + +Q++  A++PYRDFL++NT   Q+ FF +
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  121  IGHKTWPDKYQDVLSKDSLFVMLPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMG  180
            I ++ WP++Y+D +  DSL++++PAFT+SQL EAFKIGLL++LPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  181  MMMVSPMTISLPFKLLIFILMGGWEKLVSQLMVSF  215
            MMMVSPMT+SLPFKLL+F+L++GW  +++QL+ S+
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

22) Sbal195_2278 in NC_009997


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  238 bits (889),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 128/215 (60%), Positives = 179/215 (84%), Gaps = 0/215 (0%)

Query  1    MTLLDHPIQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLAL  60
            M LL+ + QLI +LF LS+LPL+ VMGT+FLKL++VFS+LRNALG+QQ+PPN+AIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  61   ILTLFTMAPVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLEKNTSNTQIEFFAN  120
            +LT+F MAPVG+ ++  L+   +  D   + +QI+ +A+ PYR FL++NT   Q+ FF +
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  121  IGHKVWPEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMG  180
            I ++ WPE+Y++ +  DSLL+++PAFT+SQL EAFKIGLL++LPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  181  MMMVSPMTIALPFKLLIFILMGGWEKLISQLMMSF  215
            MMMVSPMT++LPFKLL+F+L++GW  +++QL+ S+
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

23) Sbal678_2288 in NC_016901


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  238 bits (889),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 128/215 (60%), Positives = 179/215 (84%), Gaps = 0/215 (0%)

Query  1    MTLLDHPIQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLAL  60
            M LL+ + QLI +LF LS+LPL+ VMGT+FLKL++VFS+LRNALG+QQ+PPN+AIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  61   ILTLFTMAPVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLEKNTSNTQIEFFAN  120
            +LT+F MAPVG+ ++  L+   +  D   + +QI+ +A+ PYR FL++NT   Q+ FF +
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  121  IGHKVWPEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMG  180
            I ++ WPE+Y++ +  DSLL+++PAFT+SQL EAFKIGLL++LPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  181  MMMVSPMTIALPFKLLIFILMGGWEKLISQLMMSF  215
            MMMVSPMT++LPFKLL+F+L++GW  +++QL+ S+
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

24) Sbal175_2391 in NC_017571


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  238 bits (886),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 128/215 (60%), Positives = 179/215 (84%), Gaps = 0/215 (0%)

Query  1    MTLLDHPVQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLAL  60
            M LL+ + QLI +LF LS+LPL+ VMGT+FLKL++VFS+LRNALG+QQ+PPN+AIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  61   ILTLFTMAPVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLDKNTSNTQIEFFAN  120
            +LT+F MAPVG+ ++  L+   +  D   + +QI+ +A+ PYR FL++NT   Q+ FF +
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  121  IGHKVWPEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMG  180
            I ++ WPE+Y++ +  DSLL+++PAFT+SQL EAFKIGLL++LPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  181  MMMVSPMTIALPFKLLIFILMGGWEKLISQLMMSF  215
            MMMVSPMT++LPFKLL+F+L++GW  +++QL+ S+
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

25) Sbal117_2090 in NC_017579


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  238 bits (886),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 128/215 (60%), Positives = 179/215 (84%), Gaps = 0/215 (0%)

Query  1    MTLLDHPVQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLAL  60
            M LL+ + QLI +LF LS+LPL+ VMGT+FLKL++VFS+LRNALG+QQ+PPN+AIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  61   ILTLFTMAPVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLDKNTSNTQIEFFAN  120
            +LT+F MAPVG+ ++  L+   +  D   + +QI+ +A+ PYR FL++NT   Q+ FF +
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  121  IGHKVWPEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMG  180
            I ++ WPE+Y++ +  DSLL+++PAFT+SQL EAFKIGLL++LPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  181  MMMVSPMTIALPFKLLIFILMGGWEKLISQLMMSF  215
            MMMVSPMT++LPFKLL+F+L++GW  +++QL+ S+
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

26) Sbal_1974 in NC_009052


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  238 bits (886),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 128/215 (60%), Positives = 179/215 (84%), Gaps = 0/215 (0%)

Query  1    MTLLDHPVQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLAL  60
            M LL+ + QLI +LF LS+LPL+ VMGT+FLKL++VFS+LRNALG+QQ+PPN+AIYGLAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  61   ILTLFTMAPVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLDKNTSNTQIEFFAN  120
            +LT+F MAPVG+ ++  L+   +  D   + +QI+ +A+ PYR FL++NT   Q+ FF +
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  121  IGHKVWPEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMG  180
            I ++ WPE+Y++ +  DSLL+++PAFT+SQL EAFKIGLL++LPFVAIDLIVSNILLAMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  181  MMMVSPMTIALPFKLLIFILMGGWEKLISQLMMSF  215
            MMMVSPMT++LPFKLL+F+L++GW  +++QL+ S+
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

27) ETAC_04225 in NC_020796


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  223 bits (829),  Expect = 1e-59, Method: Compositional matrix adjust.
 Identities = 124/192 (65%), Positives = 160/192 (84%), Gaps = 1/192 (0%)

Query  24   IVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLALILTLFIMTPVGTAVQARLADAPA  83
            +VMGT+FLKLSVVF+LLRNALG+QQ+PPNIA+YGLAL+LT+FIM+PVG  VQARL +   
Sbjct  24   VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEEL  83

Query  84   EAQTTLLAR-LSDNTLDPYRQFLRQHTSATQLHFFRQVATKSWPASVREQISDDSLLLLM  142
              +   LA+ + +N+L PYR+FL+++T   Q+ FF ++  + WP   R+ +  DSLL+LM
Sbjct  84   SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  143  PAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVGG  202
            PAF++SQL EAF+IGLLLFLPF+AIDLIVSNILLAMGMMMVSPMT+S+PFKLLVF+LV+G
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  203  WDKLLGQLLLSY  214
            W  +LGQL+ SY
Sbjct  204  WSLVLGQLVGSY  215

28) esaR in NC_013508


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  223 bits (829),  Expect = 1e-59, Method: Compositional matrix adjust.
 Identities = 124/192 (65%), Positives = 160/192 (84%), Gaps = 1/192 (0%)

Query  24   IVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLALILTLFIMTPVGTAVQARLADAPA  83
            +VMGT+FLKLSVVF+LLRNALG+QQ+PPNIA+YGLAL+LT+FIM+PVG  VQARL +   
Sbjct  24   VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEEL  83

Query  84   EAQTTLLAR-LSDNTLDPYRQFLRQHTSATQLHFFRQVATKSWPASVREQISDDSLLLLM  142
              +   LA+ + +N+L PYR+FL+++T   Q+ FF ++  + WP   R+ +  DSLL+LM
Sbjct  84   SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  143  PAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVGG  202
            PAF++SQL EAF+IGLLLFLPF+AIDLIVSNILLAMGMMMVSPMT+S+PFKLLVF+LV+G
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  203  WDKLLGQLLLSY  214
            W  +LGQL+ SY
Sbjct  204  WSLVLGQLVGSY  215

29) esaR in NC_017309


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  223 bits (829),  Expect = 1e-59, Method: Compositional matrix adjust.
 Identities = 124/192 (65%), Positives = 160/192 (84%), Gaps = 1/192 (0%)

Query  24   IVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLALILTLFIMTPVGTAVQARLADAPA  83
            +VMGT+FLKLSVVF+LLRNALG+QQ+PPNIA+YGLAL+LT+FIM+PVG  VQARL +   
Sbjct  24   VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEEL  83

Query  84   EAQTTLLAR-LSDNTLDPYRQFLRQHTSATQLHFFRQVATKSWPASVREQISDDSLLLLM  142
              +   LA+ + +N+L PYR+FL+++T   Q+ FF ++  + WP   R+ +  DSLL+LM
Sbjct  84   SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  143  PAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVGG  202
            PAF++SQL EAF+IGLLLFLPF+AIDLIVSNILLAMGMMMVSPMT+S+PFKLLVF+LV+G
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  203  WDKLLGQLLLSY  214
            W  +LGQL+ SY
Sbjct  204  WSLVLGQLVGSY  215

30) SG1305 in NC_007712


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  216 bits (803),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 117/190 (62%), Positives = 163/190 (86%), Gaps = 1/190 (0%)

Query  26   MGTSFLKLAVVLSILRNALGIQQVPPNMALYGLALILSLFIMAPTALAVKAQWHPVAAPG  85
            MGT+FLKL+VV+S+LRNALG+QQVPPN+A+YGLAL+L++FIMAP +L V+A+ +    + 
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85

Query  86   D-TPWASGWDGKALMPYRQFLRRNADEKEIRYFHQLVTKTWPEEARRRVRPDSLLILLPA  144
            D  + A   D +AL+PYR+FL+RN+D  ++ +F+++V + WPE  R  V+PDSLLIL+PA
Sbjct  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145

Query  145  FTVSQLSQAFRIGLLIYLPFLAIDLLVSNVLLAMGMMMVSPMTISLPFKLLIFMLAGGWD  204
            FT+SQL++AF+IGLL++LPF+AIDL+VSN+LLAMGMMMVSPMT+SLPFKLL+F+L +GW 
Sbjct  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205

Query  205  LILSQLVQSF  214
            L+L+QLV S+
Sbjct  206  LVLGQLVGSY  215

31) ssaR in NC_021820


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

32) ssaR in NC_006905


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

33) ssaR in NC_021818


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

34) epaP in NC_011205


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

35) SEEH1578_16330 in NC_021810


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

36) SU5_02035 in NC_017623


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

37) ssaR in NC_021812


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

38) epaP in NC_011083


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

39) CFSAN001992_04495 in NC_020307


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

40) SSPA1332 in NC_011147


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

41) yscR in NC_006511


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

42) SPAB_01906 in NC_010102


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

43) yscR in NC_012125


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

44) epaP in NC_011094


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

45) ssaR in NC_016856


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

46) yscR in NC_017046


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

47) STMMW_14241 in NC_016854


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

48) ssaR in NC_003197


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

49) yscR in NC_016810


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

50) ssaR in NC_016857


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

51) STMDT12_C14350 in NC_016860


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

52) STU288_03415 in NC_021151


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

53) ssaR in NC_016863


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

54) ssaR in NC_021814


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (802),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

55) SARI_01563 in NC_010067


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (801),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 116/191 (61%), Positives = 159/191 (84%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   -DAPFWMSEWDSKALAPYRQFLQKNSEEKEASYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
             D      + D +AL PYR+FLQ+N++  + ++F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

56) ssaR in NC_021844


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (799),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 157/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F  +++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

57) SBOV14161 in NC_022241


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (799),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 157/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F  +++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

58) ssaR in NC_011294


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (799),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 157/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F  +++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

59) ssaR in NC_011274


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (799),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 157/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F  +++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

60) ssaR in NC_022221


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (799),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 157/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F  +++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

61) ssaR in NC_016831


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (799),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 157/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F  +++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

62) epaP in NC_011080


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (799),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 157/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F  +++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

63) SN31241_24890 in NC_021902


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (799),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 157/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F  +++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

64) ssaR in NC_021984


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  215 bits (799),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 157/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F  +++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

65) epaP in NC_011149


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  214 bits (798),  Expect = 3e-57, Method: Compositional matrix adjust.
 Identities = 114/191 (60%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YGLALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAKLVQSF  214
             L L++LV S+
Sbjct  205  SLVLGQLVGSY  215

66) yscR in NC_003198


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  214 bits (796),  Expect = 4e-57, Method: Compositional matrix adjust.
 Identities = 114/191 (60%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+ALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

67) STBHUCCB_13770 in NC_016832


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  214 bits (796),  Expect = 4e-57, Method: Compositional matrix adjust.
 Identities = 114/191 (60%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+ALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

68) TY21A_06540 in NC_021176


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  214 bits (796),  Expect = 4e-57, Method: Compositional matrix adjust.
 Identities = 114/191 (60%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+ALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

69) yscR in NC_004631


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  214 bits (796),  Expect = 4e-57, Method: Compositional matrix adjust.
 Identities = 114/191 (60%), Positives = 158/191 (83%), Gaps = 1/191 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84
            VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+ALVL++FIM+P  L V+ R +  +++
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   GA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
                  + + D +AL PYR+FLQ+N++  +  +F ++++  WPE  +  +KPDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMGMMMVSPMT+SLPFKLL+F+L +GW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  204  DLTLAQLVQSF  214
             L L+QLV S+
Sbjct  205  SLVLGQLVGSY  215

70) NT01EI_0960 in NC_012779


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  204 bits (759),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 121/192 (64%), Positives = 161/192 (84%), Gaps = 1/192 (0%)

Query  24   IVMGTSFLKLSVVFALLRNALGIQQIPPNlalyglaliltlFIMTPVGTAVQARLADAP-  82
            +VMGT+FLKLSVVF+LLRNALG+QQ+PPN+A+YGLAL+LT+FIM+PVG  VQARL +   
Sbjct  24   VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEEL  83

Query  83   AQAQTTLLSRLSDNTLDPYRQFLRQHTSAKQLKFFRQVATKSWPASVREKISDNSLLLLM  142
            ++   +L  ++ +N+L PYR+FL+++T   Q+ FF ++  + WP   R+ +  +SLL+LM
Sbjct  84   SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  143  PAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVGG  202
            PAF++SQL EAF+IGLLLFLPF+AIDLIVSNILLAMGMMMVSPMT+S+PFKLLVF+LV+G
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  203  WDKILGQLLLSY  214
            W  +LGQL+ SY
Sbjct  204  WSLVLGQLVGSY  215

71) HCH_03263 in NC_007645


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  186 bits (688),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 102/199 (52%), Positives = 154/199 (78%), Gaps = 0/199 (0%)

Query  16   IALIPFFAVMATSFVKIAVVLGLLRNALGIQQIPPNMALYGLAIILTAYIMAPVGISAYN  75
            ++++P++ VM+T+F+K++VV++LLRNALG+QQ+PPN+A+YGLA++LT +IMAPVG+    
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  76   ELSTKPISLENTQELKALMDTASQPYKEFLQRHGSEDEQTFFHETAAEIWPEDVAKGLEK  135
             L    +S +       + + A  PY++FLQR+   ++ TFF++   + WPE    ++  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  136  DSFFVLIPAFTASELTSAFEIGFLIYLPFLAIDLIISNILLAMGMMMVSPMTISLPFKLL  195
            DS+++L+PAFT S+L  AF IG+L++LPF+AIDLI+SNILLAMGMMMVSPMT+SLPFKLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  196  LFVLMDGWTRLIHGLVLAY  214
            +FVL+DGW+ ++  LV +Y
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

72) sctR in NC_005126


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  184 bits (683),  Expect = 3e-48, Method: Compositional matrix adjust.
 Identities = 115/191 (61%), Positives = 158/191 (83%), Gaps = 0/191 (0%)

Query  25   VMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAPVGFATQDYLRQNEVS  84
            VM+T+FLKL+VVFSLLRNALGVQQ+PPN+A+YGLA++LTI++MAPVG+  Q  L+++E+S
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   FSNAQSVDKFVEEGLTPYRNFLKQHIKPSERTFFIDSTRQIWPSQYADRLEPDSLLILLP  144
               +   +++ +++L PYR+FL+++    + TFF D  ++ WP +Y D + PDSLLIL+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  145  AFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFT+S+L  AF IG+LL+LPF+AIDLI+SNILLAMGMMMVSPMT+SLPFKLL+FVL+DGW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  205  TRLTHGLVISY  215
            + +   LV SY
Sbjct  205  SLVLGQLVGSY  215

73) sctR in NC_012962


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  183 bits (678),  Expect = 7e-48, Method: Compositional matrix adjust.
 Identities = 113/192 (59%), Positives = 158/192 (83%), Gaps = 0/192 (0%)

Query  24   AVMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAPVGFATQDYLRQNEV  83
             VM+T+FLKL+VVFSLLRNALGVQQ+PPN+A+YGLA++LTI++MAPVG+  Q  L+++E+
Sbjct  24   VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEEL  83

Query  84   SFSNAQSVEKFLEEGMAPYRNFLKQHIKSSERTFFIDSTRQIWPSQYANRLEPDSLLILL  143
            S   +   +++ ++++ PYR+FL+++    + TFF D  ++ WP +Y + + PDSLLIL+
Sbjct  84   SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  144  PAFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvllDG  203
            PAFT+S+L  AF IG+LL+LPF+AIDLI+SNILLAMGMMMVSPMT+SLPFKLL+FVL+DG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  204  WTRLTHGLVISY  215
            W+ +   LV SY
Sbjct  204  WSLVLGQLVGSY  215

74) ascR in NC_009350


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  182 bits (676),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 112/195 (58%), Positives = 162/195 (84%), Gaps = 0/195 (0%)

Query  21   PFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVMAPVGFATQDYLRQ  80
            P++ VM+T+F+KL+VVFSLLRNALGVQQ+PPN+A+YGLA++L+I++MAPVG+  Q  L++
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   NEVSLAKSESVEKFLDEGIAPYRDFLKKQIKPREHAFFIDSTKQLWPSKYADRLEPDSLL  140
            +E+S   +   +++ ++++ PYRDFL+++    + +FF D  ++ WP +Y D + PDSLL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  141  ILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvl  200
            IL+PAFT+S+L+ AF IG+L++LPF+AIDLI+SNILLAMGMMMVSPMT+SLPFKLL+FVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  201  lDGWARLTHGLVISY  215
            +DGW+ +   LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

75) PADK2_17235 in NC_018080


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  182 bits (673),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 109/196 (56%), Positives = 164/196 (84%), Gaps = 0/196 (0%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P++ VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  +  L+
Sbjct  20   LPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQ  79

Query  80   NHDVSLNDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL  139
            N+++S + +A  +++ ++++ PYR+FL+R+ +  + TFF +  ++ WP  Y + + PDSL
Sbjct  80   NEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSL  139

Query  140  LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfv  199
            LIL+PAFT+S+L  AF IG+L++LPF+AIDLI+SNILLAMGMMMVSPMT+SLPFKLL+FV
Sbjct  140  LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFV  199

Query  200  llDGWARLTHGLVISY  215
            L+DGW+ +   LV SY
Sbjct  200  LVDGWSLVLGQLVGSY  215

76) pscR in NC_017548


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  181 bits (671),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 109/196 (56%), Positives = 163/196 (84%), Gaps = 0/196 (0%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P++ VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  +  L+
Sbjct  20   LPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQ  79

Query  80   NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL  139
            N+++S   +A  +++ ++++ PYR+FL+R+ +  + TFF +  ++ WP  Y + + PDSL
Sbjct  80   NEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSL  139

Query  140  LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfv  199
            LIL+PAFT+S+L  AF IG+L++LPF+AIDLI+SNILLAMGMMMVSPMT+SLPFKLL+FV
Sbjct  140  LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFV  199

Query  200  llDGWARLTHGLVISY  215
            L+DGW+ +   LV SY
Sbjct  200  LVDGWSLVLGQLVGSY  215

77) pscR in NC_017549


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  181 bits (671),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 109/196 (56%), Positives = 163/196 (84%), Gaps = 0/196 (0%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P++ VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  +  L+
Sbjct  20   LPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQ  79

Query  80   NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL  139
            N+++S   +A  +++ ++++ PYR+FL+R+ +  + TFF +  ++ WP  Y + + PDSL
Sbjct  80   NEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSL  139

Query  140  LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfv  199
            LIL+PAFT+S+L  AF IG+L++LPF+AIDLI+SNILLAMGMMMVSPMT+SLPFKLL+FV
Sbjct  140  LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFV  199

Query  200  llDGWARLTHGLVISY  215
            L+DGW+ +   LV SY
Sbjct  200  LVDGWSLVLGQLVGSY  215

78) pscR in NC_002516


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  181 bits (671),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 109/196 (56%), Positives = 163/196 (84%), Gaps = 0/196 (0%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P++ VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  +  L+
Sbjct  20   LPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQ  79

Query  80   NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL  139
            N+++S   +A  +++ ++++ PYR+FL+R+ +  + TFF +  ++ WP  Y + + PDSL
Sbjct  80   NEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSL  139

Query  140  LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfv  199
            LIL+PAFT+S+L  AF IG+L++LPF+AIDLI+SNILLAMGMMMVSPMT+SLPFKLL+FV
Sbjct  140  LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFV  199

Query  200  llDGWARLTHGLVISY  215
            L+DGW+ +   LV SY
Sbjct  200  LVDGWSLVLGQLVGSY  215

79) ssaR in NC_021577


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  181 bits (671),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 109/196 (56%), Positives = 163/196 (84%), Gaps = 0/196 (0%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P++ VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  +  L+
Sbjct  20   LPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQ  79

Query  80   NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL  139
            N+++S   +A  +++ ++++ PYR+FL+R+ +  + TFF +  ++ WP  Y + + PDSL
Sbjct  80   NEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSL  139

Query  140  LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfv  199
            LIL+PAFT+S+L  AF IG+L++LPF+AIDLI+SNILLAMGMMMVSPMT+SLPFKLL+FV
Sbjct  140  LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFV  199

Query  200  llDGWARLTHGLVISY  215
            L+DGW+ +   LV SY
Sbjct  200  LVDGWSLVLGQLVGSY  215

80) pscR in NC_008463


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  181 bits (671),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 109/196 (56%), Positives = 163/196 (84%), Gaps = 0/196 (0%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P++ VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  +  L+
Sbjct  20   LPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQ  79

Query  80   NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL  139
            N+++S   +A  +++ ++++ PYR+FL+R+ +  + TFF +  ++ WP  Y + + PDSL
Sbjct  80   NEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSL  139

Query  140  LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfv  199
            LIL+PAFT+S+L  AF IG+L++LPF+AIDLI+SNILLAMGMMMVSPMT+SLPFKLL+FV
Sbjct  140  LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFV  199

Query  200  llDGWARLTHGLVISY  215
            L+DGW+ +   LV SY
Sbjct  200  LVDGWSLVLGQLVGSY  215

81) G655_16715 in NC_020912


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  181 bits (669),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 109/196 (56%), Positives = 163/196 (84%), Gaps = 0/196 (0%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P++ VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  +  L+
Sbjct  20   LPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQ  79

Query  80   NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL  139
            N+++S   +A  +++ ++++ PYR+FL+R+ +  + TFF +  ++ WP  Y + + PDSL
Sbjct  80   NEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSL  139

Query  140  LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfv  199
            LIL+PAFT+S+L  AF IG+L++LPF+AIDLI+SNILLAMGMMMVSPMT+SLPFKLL+FV
Sbjct  140  LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFV  199

Query  200  llDGWARLTHGLVISY  215
            L+DGW+ +   LV SY
Sbjct  200  LVDGWSLVLGQLVGSY  215

82) escR in NC_013353


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  178 bits (659),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 94/178 (53%), Positives = 151/178 (85%), Gaps = 2/178 (1%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GT+FLK+S+V+++L+NALG+QQVPPN+A+ +++L+LT+FIM+P+ L+++  + +E ++  
Sbjct  27   GTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSND  86

Query  91   DSDFFQKVDEKILSPYRGFLEKNTEKENVEFFERAAQKKLGNE--TILKKDSLFILLPAF  148
             + + +++D++ L PYR+FL++NT+ E+V FF+   Q+K  +     +K DSL+IL+PAF
Sbjct  87   IGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAF  146

Query  149  TMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206
            T++QL+ AFKIG+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  147  TLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

83) escR in NC_013361


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  178 bits (659),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 94/178 (53%), Positives = 151/178 (85%), Gaps = 2/178 (1%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GT+FLK+S+V+++L+NALG+QQVPPN+A+ +++L+LT+FIM+P+ L+++  + +E ++  
Sbjct  27   GTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSND  86

Query  91   DSDFFQKVDEKILSPYRGFLEKNTEKENVEFFERAAQKKLGNE--TILKKDSLFILLPAF  148
             + + +++D++ L PYR+FL++NT+ E+V FF+   Q+K  +     +K DSL+IL+PAF
Sbjct  87   IGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAF  146

Query  149  TMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206
            T++QL+ AFKIG+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  147  TLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

84) ECs4583 in NC_002695


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  178 bits (659),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 93/179 (52%), Positives = 152/179 (85%), Gaps = 2/179 (1%)

Query  30   IGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINY  89
            +GT+FLK+S+V+++L+NALG+QQVPPN+A+ +++L+LT+FIM+P+ L+++  + +E ++ 
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85

Query  90   TDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLPA  147
              + + +++D++ L PYR+FL++NT+ ++V FF+   Q+K  +     +K DSL+IL+PA
Sbjct  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145

Query  148  FTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206
            FT++QL+ AFKIG+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

85) escR in NC_013364


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  178 bits (658),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 93/178 (53%), Positives = 151/178 (85%), Gaps = 2/178 (1%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GT+FLK+S+V+++L+NALG+QQVPPN+A+ +++L+LT+FIM+P+ L+++  + +E ++  
Sbjct  27   GTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSND  86

Query  91   DSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLPAF  148
             + + +++D++ L PYR+FL++NT+ ++V FF+   Q+K  +     +K DSL+IL+PAF
Sbjct  87   IGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAF  146

Query  149  TMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206
            T++QL+ AFKIG+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  147  TLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

86) escR in NC_011601


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  178 bits (658),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 93/178 (53%), Positives = 151/178 (85%), Gaps = 2/178 (1%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GT+FLK+S+V+++L+NALG+QQVPPN+A+ +++L+LT+FIM+P+ L+++  + +E ++  
Sbjct  27   GTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSND  86

Query  91   DSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLPAF  148
             + + +++D++ L PYR+FL++NT+ ++V FF+   Q+K  +     +K DSL+IL+PAF
Sbjct  87   IGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAF  146

Query  149  TMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206
            T++QL+ AFKIG+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  147  TLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

87) epaP in NC_011353


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  178 bits (658),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 93/178 (53%), Positives = 151/178 (85%), Gaps = 2/178 (1%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GT+FLK+S+V+++L+NALG+QQVPPN+A+ +++L+LT+FIM+P+ L+++  + +E ++  
Sbjct  27   GTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSND  86

Query  91   DSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLPAF  148
             + + +++D++ L PYR+FL++NT+ ++V FF+   Q+K  +     +K DSL+IL+PAF
Sbjct  87   IGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAF  146

Query  149  TMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206
            T++QL+ AFKIG+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  147  TLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

88) escR in NC_002655


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  178 bits (658),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 93/178 (53%), Positives = 151/178 (85%), Gaps = 2/178 (1%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GT+FLK+S+V+++L+NALG+QQVPPN+A+ +++L+LT+FIM+P+ L+++  + +E ++  
Sbjct  27   GTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSND  86

Query  91   DSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLPAF  148
             + + +++D++ L PYR+FL++NT+ ++V FF+   Q+K  +     +K DSL+IL+PAF
Sbjct  87   IGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAF  146

Query  149  TMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206
            T++QL+ AFKIG+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  147  TLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

89) escR in NC_013008


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  178 bits (658),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 93/178 (53%), Positives = 151/178 (85%), Gaps = 2/178 (1%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GT+FLK+S+V+++L+NALG+QQVPPN+A+ +++L+LT+FIM+P+ L+++  + +E ++  
Sbjct  27   GTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSND  86

Query  91   DSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLPAF  148
             + + +++D++ L PYR+FL++NT+ ++V FF+   Q+K  +     +K DSL+IL+PAF
Sbjct  87   IGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAF  146

Query  149  TMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206
            T++QL+ AFKIG+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  147  TLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

90) escR in NC_013941


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  178 bits (658),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 93/178 (53%), Positives = 151/178 (85%), Gaps = 2/178 (1%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GT+FLK+S+V+++L+NALG+QQVPPN+A+ +++L+LT+FIM+P+ L+++  + +E ++  
Sbjct  27   GTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSND  86

Query  91   DSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLPAF  148
             + + +++D++ L PYR+FL++NT+ ++V FF+   Q+K  +     +K DSL+IL+PAF
Sbjct  87   IGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAF  146

Query  149  TMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206
            T++QL+ AFKIG+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  147  TLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

91) ECO55CA74_21290 in NC_017656


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  178 bits (658),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 93/178 (53%), Positives = 151/178 (85%), Gaps = 2/178 (1%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GT+FLK+S+V+++L+NALG+QQVPPN+A+ +++L+LT+FIM+P+ L+++  + +E ++  
Sbjct  27   GTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSND  86

Query  91   DSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLPAF  148
             + + +++D++ L PYR+FL++NT+ ++V FF+   Q+K  +     +K DSL+IL+PAF
Sbjct  87   IGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAF  146

Query  149  TMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206
            T++QL+ AFKIG+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  147  TLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

92) CDCO157_4318 in NC_017906


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  178 bits (658),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 93/178 (53%), Positives = 151/178 (85%), Gaps = 2/178 (1%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GT+FLK+S+V+++L+NALG+QQVPPN+A+ +++L+LT+FIM+P+ L+++  + +E ++  
Sbjct  27   GTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSND  86

Query  91   DSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLPAF  148
             + + +++D++ L PYR+FL++NT+ ++V FF+   Q+K  +     +K DSL+IL+PAF
Sbjct  87   IGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAF  146

Query  149  TMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206
            T++QL+ AFKIG+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  147  TLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

93) pscR in NC_011770


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  177 bits (655),  Expect = 5e-46, Method: Compositional matrix adjust.
 Identities = 107/190 (57%), Positives = 158/190 (84%), Gaps = 0/190 (0%)

Query  26   MATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLRNHDVSL  85
            M+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  +  L+N+++S 
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85

Query  86   SDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSLLILLPA  145
              +A  +++ ++++ PYR+FL+R+ +  + TFF +  ++ WP  Y + + PDSLLIL+PA
Sbjct  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145

Query  146  FTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvllDGWA  205
            FT+S+L  AF IG+L++LPF+AIDLI+SNILLAMGMMMVSPMT+SLPFKLL+FVL+DGW+
Sbjct  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205

Query  206  RLTHGLVISY  215
             +   LV SY
Sbjct  206  LVLGQLVGSY  215

94) escR in NC_013716


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  177 bits (654),  Expect = 6e-46, Method: Compositional matrix adjust.
 Identities = 92/178 (52%), Positives = 151/178 (85%), Gaps = 2/178 (1%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTIFIMSPIILQINDNISQEPINYT  90
            GT+FLK+S+V+++L+NALG+QQVPPN+A+ +++L+LTIFIM+P+ L+++  + +E ++  
Sbjct  27   GTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSND  86

Query  91   DSDFYQKVDGKIISPYRIFLENNTNKENIDFFENVAKKKLGNE--TSLKKDSLFILLPAF  148
             + + +++D + + PYR FL+ NT+ E++ FF+++ ++K  +    S+K DSL+IL+PAF
Sbjct  87   IGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAF  146

Query  149  TMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILIGGW  206
            T++QL+ AFKIG+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+L++GW
Sbjct  147  TLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

95) N646_0740 in NC_022349


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  173 bits (641),  Expect = 7e-45, Method: Compositional matrix adjust.
 Identities = 111/195 (57%), Positives = 161/195 (83%), Gaps = 0/195 (0%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P++ +M+T+F+KL+VVFSLLRNALGVQQ+PPN+A+YGLA++L+IFIMAPVG++    +++
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   HDISLEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSll  140
            +++S + +A  + + +++L PYR+FL+++    +  FF D  +  WP++Y D + +DSLL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  141  lllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvl  200
            +L+PAFT+S+L  AF IG+LL+LPF+AIDLIVSNILLAMGMMMVSPMT+SLPFKLL+FVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  201  lDGWTKLTHGLVLSY  215
            +DGW+ +   LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

96) VEA_003362 in NC_013456


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  173 bits (641),  Expect = 7e-45, Method: Compositional matrix adjust.
 Identities = 111/195 (57%), Positives = 161/195 (83%), Gaps = 0/195 (0%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P++ +M+T+F+KL+VVFSLLRNALGVQQ+PPN+A+YGLA++L+IFIMAPVG++    +++
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   HDISLEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSll  140
            +++S + +A  + + +++L PYR+FL+++    +  FF D  +  WP++Y D + +DSLL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  141  lllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvl  200
            +L+PAFT+S+L  AF IG+LL+LPF+AIDLIVSNILLAMGMMMVSPMT+SLPFKLL+FVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  201  lDGWTKLTHGLVLSY  215
            +DGW+ +   LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

97) VPBB_1532 in NC_019955


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  173 bits (641),  Expect = 7e-45, Method: Compositional matrix adjust.
 Identities = 111/195 (57%), Positives = 161/195 (83%), Gaps = 0/195 (0%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P++ +M+T+F+KL+VVFSLLRNALGVQQ+PPN+A+YGLA++L+IFIMAPVG++    +++
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   HDISLEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSll  140
            +++S + +A  + + +++L PYR+FL+++    +  FF D  +  WP++Y D + +DSLL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  141  lllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvl  200
            +L+PAFT+S+L  AF IG+LL+LPF+AIDLIVSNILLAMGMMMVSPMT+SLPFKLL+FVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  201  lDGWTKLTHGLVLSY  215
            +DGW+ +   LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

98) ssaR in NC_021848


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  173 bits (641),  Expect = 7e-45, Method: Compositional matrix adjust.
 Identities = 111/195 (57%), Positives = 161/195 (83%), Gaps = 0/195 (0%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P++ +M+T+F+KL+VVFSLLRNALGVQQ+PPN+A+YGLA++L+IFIMAPVG++    +++
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   HDISLEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSll  140
            +++S + +A  + + +++L PYR+FL+++    +  FF D  +  WP++Y D + +DSLL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  141  lllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvl  200
            +L+PAFT+S+L  AF IG+LL+LPF+AIDLIVSNILLAMGMMMVSPMT+SLPFKLL+FVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  201  lDGWTKLTHGLVLSY  215
            +DGW+ +   LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

99) ssaR in NC_021847


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  173 bits (641),  Expect = 7e-45, Method: Compositional matrix adjust.
 Identities = 111/195 (57%), Positives = 161/195 (83%), Gaps = 0/195 (0%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P++ +M+T+F+KL+VVFSLLRNALGVQQ+PPN+A+YGLA++L+IFIMAPVG++    +++
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   HDISLEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSll  140
            +++S + +A  + + +++L PYR+FL+++    +  FF D  +  WP++Y D + +DSLL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  141  lllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvl  200
            +L+PAFT+S+L  AF IG+LL+LPF+AIDLIVSNILLAMGMMMVSPMT+SLPFKLL+FVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  201  lDGWTKLTHGLVLSY  215
            +DGW+ +   LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

100) VP1672 in NC_004603


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  173 bits (641),  Expect = 7e-45, Method: Compositional matrix adjust.
 Identities = 111/195 (57%), Positives = 161/195 (83%), Gaps = 0/195 (0%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P++ +M+T+F+KL+VVFSLLRNALGVQQ+PPN+A+YGLA++L+IFIMAPVG++    +++
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   HDISLEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSll  140
            +++S + +A  + + +++L PYR+FL+++    +  FF D  +  WP++Y D + +DSLL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  141  lllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvl  200
            +L+PAFT+S+L  AF IG+LL+LPF+AIDLIVSNILLAMGMMMVSPMT+SLPFKLL+FVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  201  lDGWTKLTHGLVLSY  215
            +DGW+ +   LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

101) yscR in NC_007645


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  173 bits (641),  Expect = 7e-45, Method: Compositional matrix adjust.
 Identities = 106/207 (52%), Positives = 159/207 (77%), Gaps = 0/207 (0%)

Query  8    PLIGTLVLLSLIPFIAIMTTSFIKLAVVFSLLRNALGIQQIPPNMALYGLAIVLSIYIMA  67
             LI+ L +LS++P++ +M T+F+KL+VVFSLLRNALG+QQ+PPN+A+YGLA+VL+I+IMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  68   PVGYQIADTVKEKGFDLSQSESLKELANSAIDPMSEFLTKHSSEKERGFFLESAETLWPK  127
            PVG ++   +++  +    +    ++ ++A+ P  +FL +++   +  FF +  +  WP 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  128  EYAARLDTNSMLVLVPSFTISELKSAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMT  187
             Y   +  +S+L+L+P+FT+S+L+ AF IG+LL+LPF+AIDLIVSNILLAMGMMMVSPMT
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  188  ISlpfklllfvllDGWTRLTHGLVLSY  214
            +SLPFKLL+FVL+DGW+ +   LV SY
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

102) yscR in NC_008791


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  172 bits (635),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 108/192 (57%), Positives = 158/192 (83%), Gaps = 2/192 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  Q  LQ +E+S
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   LTNIESVEKFFDE-GLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILL  143
              +I ++   +D+ +L PYR FL+++ + ++ +FF D  ++ WP +Y D + +DSL+IL+
Sbjct  85   -NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  144  PAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDG  203
            PAFT+S+L  AF IG+L++LPF+ IDL++SNILLAMGMMMVSPMT+SLPFKLL+FVL+DG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  204  WTRLTHGLVISY  215
            W+ +   LV SY
Sbjct  204  WSLVLGQLVGSY  215

103) YE105_P0026 in NC_015475


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  172 bits (635),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 108/192 (57%), Positives = 158/192 (83%), Gaps = 2/192 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  Q  LQ +E+S
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   LTNIESVEKFFDE-GLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILL  143
              +I ++   +D+ +L PYR FL+++ + ++ +FF D  ++ WP +Y D + +DSL+IL+
Sbjct  85   -NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  144  PAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDG  203
            PAFT+S+L  AF IG+L++LPF+ IDL++SNILLAMGMMMVSPMT+SLPFKLL+FVL+DG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  204  WTRLTHGLVISY  215
            W+ +   LV SY
Sbjct  204  WSLVLGQLVGSY  215

104) Y11_p0741 in NC_017565


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  172 bits (635),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 108/192 (57%), Positives = 158/192 (83%), Gaps = 2/192 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  Q  LQ +E+S
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   LTNIESVEKFFDE-GLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILL  143
              +I ++   +D+ +L PYR FL+++ + ++ +FF D  ++ WP +Y D + +DSL+IL+
Sbjct  85   -NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  144  PAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDG  203
            PAFT+S+L  AF IG+L++LPF+ IDL++SNILLAMGMMMVSPMT+SLPFKLL+FVL+DG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  204  WTRLTHGLVISY  215
            W+ +   LV SY
Sbjct  204  WSLVLGQLVGSY  215

105) yscR in NC_010157


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  172 bits (635),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 108/192 (57%), Positives = 158/192 (83%), Gaps = 2/192 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  Q  LQ +E+S
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   LTNIESVEKFFDE-GLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILL  143
              +I ++   +D+ +L PYR FL+++ + ++ +FF D  ++ WP +Y D + +DSL+IL+
Sbjct  85   -NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  144  PAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDG  203
            PAFT+S+L  AF IG+L++LPF+ IDL++SNILLAMGMMMVSPMT+SLPFKLL+FVL+DG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  204  WTRLTHGLVISY  215
            W+ +   LV SY
Sbjct  204  WSLVLGQLVGSY  215

106) YPA_CD0018 in NC_008122


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  172 bits (635),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 108/192 (57%), Positives = 158/192 (83%), Gaps = 2/192 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  Q  LQ +E+S
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   LTNIESVEKFFDE-GLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILL  143
              +I ++   +D+ +L PYR FL+++ + ++ +FF D  ++ WP +Y D + +DSL+IL+
Sbjct  85   -NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  144  PAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDG  203
            PAFT+S+L  AF IG+L++LPF+ IDL++SNILLAMGMMMVSPMT+SLPFKLL+FVL+DG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  204  WTRLTHGLVISY  215
            W+ +   LV SY
Sbjct  204  WSLVLGQLVGSY  215

107) yscR in NC_005813


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  172 bits (635),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 108/192 (57%), Positives = 158/192 (83%), Gaps = 2/192 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  Q  LQ +E+S
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   LTNIESVEKFFDE-GLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILL  143
              +I ++   +D+ +L PYR FL+++ + ++ +FF D  ++ WP +Y D + +DSL+IL+
Sbjct  85   -NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  144  PAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDG  203
            PAFT+S+L  AF IG+L++LPF+ IDL++SNILLAMGMMMVSPMT+SLPFKLL+FVL+DG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  204  WTRLTHGLVISY  215
            W+ +   LV SY
Sbjct  204  WSLVLGQLVGSY  215

108) yscR in NC_003131


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  172 bits (635),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 108/192 (57%), Positives = 158/192 (83%), Gaps = 2/192 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  Q  LQ +E+S
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   LTNIESVEKFFDE-GLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILL  143
              +I ++   +D+ +L PYR FL+++ + ++ +FF D  ++ WP +Y D + +DSL+IL+
Sbjct  85   -NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  144  PAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDG  203
            PAFT+S+L  AF IG+L++LPF+ IDL++SNILLAMGMMMVSPMT+SLPFKLL+FVL+DG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  204  WTRLTHGLVISY  215
            W+ +   LV SY
Sbjct  204  WSLVLGQLVGSY  215

109) yscR in NC_017153


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  172 bits (635),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 108/192 (57%), Positives = 158/192 (83%), Gaps = 2/192 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  Q  LQ +E+S
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   LTNIESVEKFFDE-GLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILL  143
              +I ++   +D+ +L PYR FL+++ + ++ +FF D  ++ WP +Y D + +DSL+IL+
Sbjct  85   -NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  144  PAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDG  203
            PAFT+S+L  AF IG+L++LPF+ IDL++SNILLAMGMMMVSPMT+SLPFKLL+FVL+DG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  204  WTRLTHGLVISY  215
            W+ +   LV SY
Sbjct  204  WSLVLGQLVGSY  215

110) yscR in NC_017157


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  172 bits (635),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 108/192 (57%), Positives = 158/192 (83%), Gaps = 2/192 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  Q  LQ +E+S
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   LTNIESVEKFFDE-GLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILL  143
              +I ++   +D+ +L PYR FL+++ + ++ +FF D  ++ WP +Y D + +DSL+IL+
Sbjct  85   -NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  144  PAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDG  203
            PAFT+S+L  AF IG+L++LPF+ IDL++SNILLAMGMMMVSPMT+SLPFKLL+FVL+DG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  204  WTRLTHGLVISY  215
            W+ +   LV SY
Sbjct  204  WSLVLGQLVGSY  215

111) YPDSF_3973 in NC_009377


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  172 bits (635),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 108/192 (57%), Positives = 158/192 (83%), Gaps = 2/192 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  Q  LQ +E+S
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   LTNIESVEKFFDE-GLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILL  143
              +I ++   +D+ +L PYR FL+++ + ++ +FF D  ++ WP +Y D + +DSL+IL+
Sbjct  85   -NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  144  PAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDG  203
            PAFT+S+L  AF IG+L++LPF+ IDL++SNILLAMGMMMVSPMT+SLPFKLL+FVL+DG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  204  WTRLTHGLVISY  215
            W+ +   LV SY
Sbjct  204  WSLVLGQLVGSY  215

112) yscR in NC_014017


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  172 bits (635),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 108/192 (57%), Positives = 158/192 (83%), Gaps = 2/192 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  Q  LQ +E+S
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   LTNIESVEKFFDE-GLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILL  143
              +I ++   +D+ +L PYR FL+++ + ++ +FF D  ++ WP +Y D + +DSL+IL+
Sbjct  85   -NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  144  PAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDG  203
            PAFT+S+L  AF IG+L++LPF+ IDL++SNILLAMGMMMVSPMT+SLPFKLL+FVL+DG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  204  WTRLTHGLVISY  215
            W+ +   LV SY
Sbjct  204  WSLVLGQLVGSY  215

113) pYV0071 in NC_006153


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  172 bits (635),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 108/192 (57%), Positives = 158/192 (83%), Gaps = 2/192 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  Q  LQ +E+S
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   LTNIESVEKFFDE-GLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILL  143
              +I ++   +D+ +L PYR FL+++ + ++ +FF D  ++ WP +Y D + +DSL+IL+
Sbjct  85   -NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  144  PAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDG  203
            PAFT+S+L  AF IG+L++LPF+ IDL++SNILLAMGMMMVSPMT+SLPFKLL+FVL+DG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  204  WTRLTHGLVISY  215
            W+ +   LV SY
Sbjct  204  WSLVLGQLVGSY  215

114) YPTS_4289 in NC_010635


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  172 bits (635),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 108/192 (57%), Positives = 158/192 (83%), Gaps = 2/192 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+T+F+K++VVFSLLRNALGVQQ+PPN+A+YGLA++L++++MAPVG+  Q  LQ +E+S
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  85   LTNIESVEKFFDE-GLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILL  143
              +I ++   +D+ +L PYR FL+++ + ++ +FF D  ++ WP +Y D + +DSL+IL+
Sbjct  85   -NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  144  PAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDG  203
            PAFT+S+L  AF IG+L++LPF+ IDL++SNILLAMGMMMVSPMT+SLPFKLL+FVL+DG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  204  WTRLTHGLVISY  215
            W+ +   LV SY
Sbjct  204  WSLVLGQLVGSY  215

115) M892_04535 in NC_022269


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  171 bits (634),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 111/195 (57%), Positives = 159/195 (82%), Gaps = 0/195 (0%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVTQ  80
            P++ +M+T+F+KL+VVFSLLRNALGVQQ+PPN+A+YGLA++L+IFIMAPVG++    + +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   HEISLEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWPQKYVDRLESDSll  140
            +E+S + +   + + +++L PYR+FL+++    +  FF D  +  WP++Y D + +DSLL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  141  lllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvl  200
            +L+PAFT+S+L  AF IG+LL+LPF+AIDLIVSNILLAMGMMMVSPMT+SLPFKLL+FVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  201  lDGWTKLTHGLVLSY  215
            +DGW+ +   LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

116) VIBHAR_01726 in NC_009783


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  171 bits (634),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 111/195 (57%), Positives = 159/195 (82%), Gaps = 0/195 (0%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVTQ  80
            P++ +M+T+F+KL+VVFSLLRNALGVQQ+PPN+A+YGLA++L+IFIMAPVG++    + +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   HEISLEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWPQKYVDRLESDSll  140
            +E+S + +   + + +++L PYR+FL+++    +  FF D  +  WP++Y D + +DSLL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  141  lllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvl  200
            +L+PAFT+S+L  AF IG+LL+LPF+AIDLIVSNILLAMGMMMVSPMT+SLPFKLL+FVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  201  lDGWTKLTHGLVLSY  215
            +DGW+ +   LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

117) yscR in NC_015717


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  171 bits (634),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 99/196 (51%), Positives = 152/196 (78%), Gaps = 2/196 (1%)

Query  27   PFIAIMATTYVKLVVVLGLVRNALGVQNVPPNMALNGIAIILTVYIMAPVAIASYQAVRD  86
            P++ +M+T+++KL VV++L+RNALGVQ+VPPN+A+ G+A++LT++IMAPV++     +++
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  87   RPVDTRNMESLA-DIARDGAKPFLHFLERNTTPADRAFFVDTTHRLWPKDQADSVTDHDI  145
              + + ++ +LA +I +++  P+ +FL+RNT   + +FF D  +  WP    DSV  + +
Sbjct  81   EEL-SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSL  139

Query  146  LVLVPAFTTAELTKAFKAGFLLFLPFIVIDLIVSNILLAMGMMMVSPMTISLPFKLFLFV  205
            L+L+PAFT ++L  AFK G+LLFLPF+ IDLIVSNILLAMGMMMVSPMT+SLPFKL++FV
Sbjct  140  LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFV  199

Query  206  IVNGWQKLIQGLVLSY  221
            +V+GW  ++  LV SY
Sbjct  200  LVDGWSLVLGQLVGSY  215

118) Varpa_4985 in NC_014931


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  167 bits (616),  Expect = 6e-43, Method: Compositional matrix adjust.
 Identities = 90/208 (44%), Positives = 153/208 (74%), Gaps = 2/208 (0%)

Query  11   IVALILALGVTSFAALMVTSYTKLIIVFGLLRTALGLQQTPPNMVLNGIAIILSVYIMAP  70
            ++AL++ L+V ++  +M T++ KL +VF+LLR ALG+QQ PPN+ + G+A++L+++IMAP
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  71   VGMEVGDALRNRTLGQKGEGLNDIVAVIDAAKVPLKEFLQKHTRERERQFFLKSASSMWP  130
            VG++V   L+N  L++   +L + +   + A VP ++FLQ++T   +  FF     + WP
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQID--QNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  131  QARAAQLQPDDFMVLVPSFTLSELTRAFQIGFVIYLVFVVVDLIVATVLLALGMSMIAPT  190
            +     ++PD +++L+P+FTLS+L  AF+IG++++L FV +DLIV+ +LLA+GM M++P 
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  191  TISLPFKLLLFVMLDGWTRLVHGLVLSY  218
            T+SLPFKLL+FV++DGW+ ++  LV SY
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

119) VAPA_2c06210 in NC_022234


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  165 bits (609),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 90/214 (43%), Positives = 153/214 (72%), Gaps = 2/214 (0%)

Query  5    LPEPLTLVALIVAFGIAPFVALMVTSYTKLVIVFGLLRTALGLQQTPPNMVLNGIAIILS  64
            L  +  L+AL+  +++ P++ +M T++ KL +VF+LLR ALG+QQ PPN+ + G+A++L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  65   VYIMAPVGMDIGDALRGRSFGAKGEGLGDIMAVIDAAKAPVKEFLQKHTHERERQFFLKS  124
            ++IMAPVG+D+   L+   ++    +L++   + + A  P ++FLQ++T+  +  FF   
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAH--QIDQNALVPYRDFLQRNTDIEQVTFFNDI  121

Query  125  AANIWPKARAEQLKDDDFMVLVPSFTLSELTRAFQIGFIIYLVFVVVDLIVATVLLALGM  184
              N WP    + +K D +++L+P+FTLS+L  AF+IG++++L FV +DLIV+ +LLA+GM
Sbjct  122  VQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGM  181

Query  185  SMISPTTISLPFKLLLFVMLDGWTRLVHGLVLSY  218
             M+SP T+SLPFKLL+FV++DGW+ ++  LV SY
Sbjct  182  MMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

120) DvMF_2439 in NC_011769


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  164 bits (605),  Expect = 4e-42, Method: Compositional matrix adjust.
 Identities = 100/194 (52%), Positives = 147/194 (76%), Gaps = 9/194 (4%)

Query  15   LLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILSIFIMAPMVESTL  74
            +L++ P++++M T+++K+ VV SL+RNALGVQQVPP + + GLA++L+IFIMAP+    L
Sbjct  16   MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV---GL  72

Query  75   DILKTVRVSEQPEPREVVELLDRASP----PLRDFLSRNADDKVITAFMGTAKRIWPKER  130
            D+    R+ ++  + ++  L ++       P RDFL RN+D   +T F +  +  WP   
Sbjct  73   DV--QARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERY  130

Query  131  HDTIRRENLLILVPAFTISELTKAFQIGFLLYLPFVAIDLIISNILLAMGMMMVSPMTIS  190
            +D+++ ++LLIL+PAFT+S+L  AF+IG+LL+LPFVAIDLI+SNILLAMGMMMVSPMT+S
Sbjct  131  RDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLS  190

Query  191  LPFKLLLFVTLDGW  204
            LPFKLL+FV +DGW
Sbjct  191  LPFKLLVFVLVDGW  204

121) Dvul_2984 in NC_008741


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  163 bits (601),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 101/192 (53%), Positives = 148/192 (78%), Gaps = 5/192 (2%)

Query  15   LLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFIMAPVASGTL  74
            +L++ P++++M T+++K+ VV SL+RNALGVQQVPP + + GLA++L+IFIMAPV+ +  
Sbjct  16   MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ  75

Query  75   DLMQNMKIGPDPAP--REIIALLDKASPPLRGFLERNADDKVVTVFMSTAKRIWPADQHA  132
              +QN  ++ D ++  ++I    ++A  P R+FL+RN+D   VT F    +  WP   + 
Sbjct  76   ARLQNEELSNDIGALAHQID---QNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  133  SISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGMMMVSPMTISLP  192
            S+  D+LLIL+P+FT+S+L  AF+IG+LL+LPFVAIDL++SNILLAMGMMMVSPMT+SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  193  FKLLLFVTLDGW  204
            FKLL+FV +DGW
Sbjct  193  FKLLVFVLVDGW  204

122) DVUA0122 in NC_005863


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  163 bits (601),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 101/192 (53%), Positives = 148/192 (78%), Gaps = 5/192 (2%)

Query  15   LLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFIMAPVASGTL  74
            +L++ P++++M T+++K+ VV SL+RNALGVQQVPP + + GLA++L+IFIMAPV+ +  
Sbjct  16   MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ  75

Query  75   DLMQNMKIGPDPAP--REIIALLDKASPPLRGFLERNADDKVVTVFMSTAKRIWPADQHA  132
              +QN  ++ D ++  ++I    ++A  P R+FL+RN+D   VT F    +  WP   + 
Sbjct  76   ARLQNEELSNDIGALAHQID---QNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  133  SISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGMMMVSPMTISLP  192
            S+  D+LLIL+P+FT+S+L  AF+IG+LL+LPFVAIDL++SNILLAMGMMMVSPMT+SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  193  FKLLLFVTLDGW  204
            FKLL+FV +DGW
Sbjct  193  FKLLVFVLVDGW  204

123) Deval_3224 in NC_017311


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  163 bits (601),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 101/192 (53%), Positives = 148/192 (78%), Gaps = 5/192 (2%)

Query  15   LLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFIMAPVASGTL  74
            +L++ P++++M T+++K+ VV SL+RNALGVQQVPP + + GLA++L+IFIMAPV+ +  
Sbjct  16   MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ  75

Query  75   DLMQNMKIGPDPAP--REIIALLDKASPPLRGFLERNADDKVVTVFMSTAKRIWPADQHA  132
              +QN  ++ D ++  ++I    ++A  P R+FL+RN+D   VT F    +  WP   + 
Sbjct  76   ARLQNEELSNDIGALAHQID---QNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  133  SISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGMMMVSPMTISLP  192
            S+  D+LLIL+P+FT+S+L  AF+IG+LL+LPFVAIDL++SNILLAMGMMMVSPMT+SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  193  FKLLLFVTLDGW  204
            FKLL+FV +DGW
Sbjct  193  FKLLVFVLVDGW  204

124) hrcR in NC_016830


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  162 bits (600),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 92/200 (46%), Positives = 150/200 (75%), Gaps = 0/200 (0%)

Query  18   ISLVPLLLIICSAFLKIAIVLTITRNAIGVQQVPPNMALYAIALAATLFIMAPVGHNIAE  77
            +S++PLL+++ +AFLK+++V+++ RNA+GVQQVPPN+A+Y++AL  T+FIMAPVG ++  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   QLKERPLDFSNTEALQGSALNAIKPLQAFMSRNTNPDILAHLLENTQRMWPKERAEQASR  137
            +L++  L        +    NA+ P + F+ RNT+ + ++ + +  Q  WP    +    
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  138  DDLMLLIPAFMLSELEAGFQMGFLIYIPFIVIDLIVSNLLLALGMQMVAPMTISLPLKLL  197
            D L++L+PAF LS+L+ +F++G+L+++PF+ IDLIVSN+LLA+GM MV+PMT+SLP+KLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  198  IFVLVQGWTQLLDSLFYSYL  217
            +FVLV+GW+ +L+ L  SYL
Sbjct  197  VFVLVDGWSLVLGQLVGSYL  216

125) NH44784_014541 in NC_021285


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  161 bits (594),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 97/197 (50%), Positives = 141/197 (72%), Gaps = 7/197 (3%)

Query  25   MTTSFLKIAVVLTLVRNALGVQQVPPNMALYGLALILSAYVMGPVVMQIGDELRAPPAVA  84
            M T+FLK++VV++L+RNALGVQQVPPN+A+YGLAL+L+ ++M+PV +++   L+      
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85

Query  85   APGTPEPDRLEGILEAVARGAEPMRAFMLKNSRAEQRDFFLRTARGLWGEQQARNLKEDD  144
              G+   +  +  L        P R F+ +N+  EQ  FF    +  W E+   ++K D 
Sbjct  86   DIGALAHQIDQNALV-------PYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDS  138

Query  145  LLVLIPSFLLSELTAAFQIGFLLYLPFVIIDLIVSNILLAMGMMMVSPVTISMPLKLFLF  204
            LL+L+P+F LS+L  AF+IG+LL+LPFV IDLIVSNILLAMGMMMVSP+T+S+P+KL++F
Sbjct  139  LLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVF  198

Query  205  VMVDGWTRLIQGLVLSY  221
            V+VDGW+ ++  LV SY
Sbjct  199  VLVDGWSLVLGQLVGSY  215

126) PSEBR_a5382 in NC_015379


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  161 bits (595),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 91/200 (46%), Positives = 150/200 (75%), Gaps = 0/200 (0%)

Query  18   ISLVPLLLIICSAFLKIAIVLTITRNAIGVQQVPPNMALYAIALAATLFIMAPVGHNIAE  77
            +S++PLL+++ +AFLK+++V+++ RNA+GVQQVPPN+A+Y++AL  T+FIMAPVG ++  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   QVKERPLDFSNTEALQGSALNAIKPLQAFMSRNTNPDILAHLLENTQRMWPKERAEQASR  137
            ++++  L        +    NA+ P + F+ RNT+ + ++ + +  Q  WP    +    
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  138  DDLMLLIPAFMLSELEAGFQMGFLIYIPFIVIDLIVSNLLLALGMQMVAPMTISLPLKLL  197
            D L++L+PAF LS+L+ +F++G+L+++PF+ IDLIVSN+LLA+GM MV+PMT+SLP+KLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  198  IFVLVQGWTQLLDSLFYSYL  217
            +FVLV+GW+ +L+ L  SYL
Sbjct  197  VFVLVDGWSLVLGQLVGSYL  216

127) spaP in NC_010694


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  160 bits (592),  Expect = 5e-41, Method: Compositional matrix adjust.
 Identities = 91/217 (42%), Positives = 163/217 (76%), Gaps = 4/217 (1%)

Query  1    MLSNDISLIALLSFFTLLPFLIAGGTCFIKFSIVMVMVRNALGIQQVPSTLTLNGIALIL  60
            +L++   LIALL  +++LP+L+  GT F+K+S+V  ++RNALG+QQVP+ +++ G+AL+L
Sbjct  3    LLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVL  62

Query  61   TAFVMMPVCQKVSGYIESHHIDFNNSASINQLMDQGLGSYRDYLVHYSDHELIRFFNQVQ  120
            T F+M PV   V + ++++++  + +A  +Q+ +++L +YRD+L + +D E + FFN++ 
Sbjct  63   TIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  121  QQKTGETIPEVEEHELRSLSLITLMPAYALSEIQSAFKIAFYLYVPFVVIDMVVSSILLA  180
            Q+K  E   +    +    SL+ LMPA++LS+++ AFKI++ L++PFV ID++VS+ILLA
Sbjct  123  QNKWPERYRDSVKPD----SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLA  178

Query  181  LGMMMMSPVTISIPIKLILFVSMNGWSLLTKGMIAQY  217
            +GMMM+SP+T+S+P+KL++FV ++GWSL+   +++ Y
Sbjct  179  MGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

128) bscR in NC_018829


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  160 bits (591),  Expect = 6e-41, Method: Compositional matrix adjust.
 Identities = 98/198 (50%), Positives = 145/198 (74%), Gaps = 8/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            M T+FLK++VV++L+RNALGVQQVPPN+A+YGLAL+L+ ++MAPV    G +VQA   + 
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV----GLDVQARLQNE  81

Query  85   GESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
              S   +++A +    + + ++ P R F+ RN++  Q  FF    ++ W E     +  D
Sbjct  82   ELSNDIGALAHQ----IDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPD  137

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL+L PAF +S+L  AF++G+LL+LPF+ IDLIVSNILLAMGMMMVSP+T+S+P+KL++
Sbjct  138  SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLV  197

Query  205  FVMVDGWTRLIQGLVLSY  222
            FV+VDGW+ ++  LV SY
Sbjct  198  FVLVDGWSLVLGQLVGSY  215

129) bscR in NC_018518


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  160 bits (591),  Expect = 6e-41, Method: Compositional matrix adjust.
 Identities = 98/198 (50%), Positives = 145/198 (74%), Gaps = 8/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            M T+FLK++VV++L+RNALGVQQVPPN+A+YGLAL+L+ ++MAPV    G +VQA   + 
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV----GLDVQARLQNE  81

Query  85   GESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
              S   +++A +    + + ++ P R F+ RN++  Q  FF    ++ W E     +  D
Sbjct  82   ELSNDIGALAHQ----IDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPD  137

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL+L PAF +S+L  AF++G+LL+LPF+ IDLIVSNILLAMGMMMVSP+T+S+P+KL++
Sbjct  138  SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLV  197

Query  205  FVMVDGWTRLIQGLVLSY  222
            FV+VDGW+ ++  LV SY
Sbjct  198  FVLVDGWSLVLGQLVGSY  215

130) bscR in NC_017223


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  160 bits (591),  Expect = 6e-41, Method: Compositional matrix adjust.
 Identities = 98/198 (50%), Positives = 145/198 (74%), Gaps = 8/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            M T+FLK++VV++L+RNALGVQQVPPN+A+YGLAL+L+ ++MAPV    G +VQA   + 
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV----GLDVQARLQNE  81

Query  85   GESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
              S   +++A +    + + ++ P R F+ RN++  Q  FF    ++ W E     +  D
Sbjct  82   ELSNDIGALAHQ----IDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPD  137

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL+L PAF +S+L  AF++G+LL+LPF+ IDLIVSNILLAMGMMMVSP+T+S+P+KL++
Sbjct  138  SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLV  197

Query  205  FVMVDGWTRLIQGLVLSY  222
            FV+VDGW+ ++  LV SY
Sbjct  198  FVLVDGWSLVLGQLVGSY  215

131) bscR in NC_002929


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  160 bits (591),  Expect = 6e-41, Method: Compositional matrix adjust.
 Identities = 98/198 (50%), Positives = 145/198 (74%), Gaps = 8/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            M T+FLK++VV++L+RNALGVQQVPPN+A+YGLAL+L+ ++MAPV    G +VQA   + 
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV----GLDVQARLQNE  81

Query  85   GESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
              S   +++A +    + + ++ P R F+ RN++  Q  FF    ++ W E     +  D
Sbjct  82   ELSNDIGALAHQ----IDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPD  137

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL+L PAF +S+L  AF++G+LL+LPF+ IDLIVSNILLAMGMMMVSP+T+S+P+KL++
Sbjct  138  SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLV  197

Query  205  FVMVDGWTRLIQGLVLSY  222
            FV+VDGW+ ++  LV SY
Sbjct  198  FVLVDGWSLVLGQLVGSY  215

132) bscR in NC_019382


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  160 bits (589),  Expect = 9e-41, Method: Compositional matrix adjust.
 Identities = 98/198 (50%), Positives = 145/198 (74%), Gaps = 8/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            M T+FLK++VV++L+RNALGVQQVPPN+A+YGLAL+L+ ++MAPV    G +VQA   + 
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV----GLDVQARLQNE  81

Query  85   GESGTAAPMALDAVLGVVERGVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
              S   +++A +    + + ++ P R F+ RN++  Q  FF    ++ W E     +  D
Sbjct  82   ELSNDIGALAHQ----IDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPD  137

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL+L PAF +S+L  AF++G+LL+LPF+ IDLIVSNILLAMGMMMVSP+T+S+P+KL++
Sbjct  138  SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLV  197

Query  205  FVMVDGWTRLIQGLVLSY  222
            FV+VDGW+ ++  LV SY
Sbjct  198  FVLVDGWSLVLGQLVGSY  215

133) bscR in NC_002927


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  160 bits (589),  Expect = 9e-41, Method: Compositional matrix adjust.
 Identities = 98/198 (50%), Positives = 145/198 (74%), Gaps = 8/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            M T+FLK++VV++L+RNALGVQQVPPN+A+YGLAL+L+ ++MAPV    G +VQA   + 
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV----GLDVQARLQNE  81

Query  85   GESGTAAPMALDAVLGVVERGVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
              S   +++A +    + + ++ P R F+ RN++  Q  FF    ++ W E     +  D
Sbjct  82   ELSNDIGALAHQ----IDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPD  137

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL+L PAF +S+L  AF++G+LL+LPF+ IDLIVSNILLAMGMMMVSP+T+S+P+KL++
Sbjct  138  SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLV  197

Query  205  FVMVDGWTRLIQGLVLSY  222
            FV+VDGW+ ++  LV SY
Sbjct  198  FVLVDGWSLVLGQLVGSY  215

134) bscR in NC_002928


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  160 bits (589),  Expect = 9e-41, Method: Compositional matrix adjust.
 Identities = 98/198 (50%), Positives = 145/198 (74%), Gaps = 8/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            M T+FLK++VV++L+RNALGVQQVPPN+A+YGLAL+L+ ++MAPV    G +VQA   + 
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV----GLDVQARLQNE  81

Query  85   GESGTAAPMALDAVLGVVERGVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
              S   +++A +    + + ++ P R F+ RN++  Q  FF    ++ W E     +  D
Sbjct  82   ELSNDIGALAHQ----IDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPD  137

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL+L PAF +S+L  AF++G+LL+LPF+ IDLIVSNILLAMGMMMVSP+T+S+P+KL++
Sbjct  138  SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLV  197

Query  205  FVMVDGWTRLIQGLVLSY  222
            FV+VDGW+ ++  LV SY
Sbjct  198  FVLVDGWSLVLGQLVGSY  215

135) bscR in NC_018828


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  160 bits (589),  Expect = 9e-41, Method: Compositional matrix adjust.
 Identities = 98/198 (50%), Positives = 145/198 (74%), Gaps = 8/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            M T+FLK++VV++L+RNALGVQQVPPN+A+YGLAL+L+ ++MAPV    G +VQA   + 
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV----GLDVQARLQNE  81

Query  85   GESGTAAPMALDAVLGVVERGVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
              S   +++A +    + + ++ P R F+ RN++  Q  FF    ++ W E     +  D
Sbjct  82   ELSNDIGALAHQ----IDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPD  137

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL+L PAF +S+L  AF++G+LL+LPF+ IDLIVSNILLAMGMMMVSP+T+S+P+KL++
Sbjct  138  SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLV  197

Query  205  FVMVDGWTRLIQGLVLSY  222
            FV+VDGW+ ++  LV SY
Sbjct  198  FVLVDGWSLVLGQLVGSY  215

136) hrcR in NC_017575


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  159 bits (588),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 88/209 (43%), Positives = 152/209 (73%), Gaps = 4/209 (1%)

Query  9    LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAP  68
            LI +   +++LP+  ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A++++ FIMAP
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  69   VGMEAMQR-AHVQLNAQGGANITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLW  127
            VG++   R  + +L+ + GA   Q+    + A  P+R+FL+++T+  + +FF    Q+ W
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQID---QNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  128  PPAKAALLKEDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTP  187
            P      +K D L++L PAFTL++L  AF+IG+LL+L+F+ IDL+++N+L+A+G+  V+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  188  SNVAIPFKLLLFVVMDGWSVLVHGLVNTY  216
              +++PFKLL+FV++DGWS+++  LV +Y
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

137) hrcR in NC_014310


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  159 bits (588),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 84/209 (41%), Positives = 152/209 (73%), Gaps = 2/209 (0%)

Query  8    SLIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMA  67
             LI +   +++LP+  ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A++++ FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  68   PVGMEAMQRAHVQINAQGGTNITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLW  127
            PVG++   R + +  +++   +++ +   + A  P+R+FL+++T+  + +FF    Q+ W
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQID--QNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  128  PPAKAALLKDDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTP  187
            P      +K D L++L PAFTL++L  AF+IG+LL+L+F+ IDL+++N+L+A+G+  V+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  188  SNVAIPFKLLLFVVMDGWSVLVHGLVNTY  216
              +++PFKLL+FV++DGWS+++  LV +Y
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

138) Aave_0449 in NC_008752


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  157 bits (581),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 138/190 (73%), Gaps = 2/190 (1%)

Query  30   TSYTKVVVVLGLLRNALGVQQVPPNMVLNGIAIIISVYVMAPVAMEASDRMQMLPPSAQS  89
            T++ K+ VV++LLRNALGVQQVPPN+ + G+A+++++++MAPV+++   R+Q    S + 
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  90   SNTQQMLAAASAAREPFRKFLDKHADAAEKAFFLKSAQALWPEERARSLQADDLVVLAPA  149
            +   + +   +    P+R FL++++D  + +FF    Q  WPE    S+++D L++L PA
Sbjct  88   GALAHQIDQNALV--PYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145

Query  150  FLLTELTAAFRIGFLLYLAFIIVELVIANVLLAMGLSQVSPTNVAIPFKLLLFVVLDGWS  209
            F L++L  AF+IG+LL+L+F+ ++L+++N+LLAMG+  VSP  +++PFKLL+FV++DGWS
Sbjct  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205

Query  210  QVMHGLVMTY  219
             V+  LV +Y
Sbjct  206  LVLGQLVGSY  215

139) Acav_0515 in NC_015138


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  157 bits (581),  Expect = 4e-40, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 138/190 (73%), Gaps = 2/190 (1%)

Query  30   TSYTKVVVVLGLLRNALGVQQVPPNMVLNGIAIIISVYVMAPVAMEASDRMQMLPPSAQS  89
            T++ K+ VV++LLRNALGVQQVPPN+ + G+A+++++++MAPV+++   R+Q    S + 
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  90   SNTQQMLAAASAAREPFRKFLDKHADAAEKAFFLKSAQALWPEDRARSLQADDLVVLAPA  149
            +   + +   +    P+R FL++++D  + +FF    Q  WPE    S+++D L++L PA
Sbjct  88   GALAHQIDQNALV--PYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145

Query  150  FLLTELTAAFRIGFLLYLAFIIVELVIANVLLAMGLSQVSPTNVAIPFKLLLFVVLDGWS  209
            F L++L  AF+IG+LL+L+F+ ++L+++N+LLAMG+  VSP  +++PFKLL+FV++DGWS
Sbjct  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205

Query  210  QVMHGLVMTY  219
             V+  LV +Y
Sbjct  206  LVLGQLVGSY  215

140) D781_3938 in NC_020064


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  157 bits (579),  Expect = 5e-40, Method: Compositional matrix adjust.
 Identities = 99/201 (50%), Positives = 153/201 (77%), Gaps = 2/201 (0%)

Query  18   LSLVPMLMIVCTCFLKISMVLLLTRNAMGVQQVPPNMALYGIALAATLFVMAPVFNDMSQ  77
            LS++P+L+++ T FLK+S+V+ L RNA+GVQQVPPN+A+YG+AL  T+F+MAPV  D+  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   RLKAMPLDFSNMERLEYTFGNGA-EPLKAFMTRNTDPDILTHLQENGARMWPKEMAQSLT  136
            RL+   L  +++  L   +++ A  P + F+ RNTD + +T +++     WP    +S+ 
Sbjct  77   RLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK  135

Query  137  PQSPLLVIPAFVLSELQNGFKIGFLIFIPFLVMDLIVSNVLLALGMQMVSPMTVSLPLKI  196
            P+S L+++PAF LS+L+++FKIG+L+F+PF+ +DLIVSN+LLA+GM MVSPMT+SLP+K+
Sbjct  136  PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  197  LLFVLVSGWTRLLDGLFYSYL  217
            L+FVLV GW+ +L+ L  SYL
Sbjct  196  LVFVLVDGWSLVLGQLVGSYL  216

141) hrcR in NC_010694


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  157 bits (579),  Expect = 6e-40, Method: Compositional matrix adjust.
 Identities = 93/201 (47%), Positives = 154/201 (77%), Gaps = 2/201 (0%)

Query  18   LSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFNQMQQ  77
            LS++P+L+++ T FLK+S+V+ + RNA+GVQQVPPN+A+YG+AL  T+F+MAPV  ++Q 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   QFSQSPADLSSMDSLKNSVTH-GVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSVS  136
            ++ +     + +++L + + + ++ P + F+ +NTD + +  +++     WP    DSV 
Sbjct  77   RLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK  135

Query  137  KDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKM  196
             D+LL+++PAF LS+L+ +FKIG+L+++PF+ IDLIVSN+LLA+GM MV+PMTLSLP+K+
Sbjct  136  PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  197  LLFVLINGWTRLLDGLFYSYL  217
            L+FVL++GW+ +L+ L  SYL
Sbjct  196  LVFVLVDGWSLVLGQLVGSYL  216

142) sctR in NC_014718


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  157 bits (578),  Expect = 6e-40, Method: Compositional matrix adjust.
 Identities = 86/199 (44%), Positives = 142/199 (72%), Gaps = 0/199 (0%)

Query  31   ISVVPLVAVVITSYTKIVVVLSLLRNALGAQQVPPNMVLNGIAILVSLYIMAPIGMAAAK  90
            +SV+PL+ V+ T++ K+ VV+SLLRNALG QQVPPN+ + G+A++++++IMAP+G+    
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  91   QLENQPNAGTPSQSVVQAFSAAQEPFRAFLKQHANKREKRFFMRTATVIWPKEVADGLRE  150
            +L+N+  +   +    Q    A  P+R FL+++++  +  FF       WP    D+++ 
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  151  DDFIVLAPAFTLSELTDAFKIGFLLYITFVVIDLIIANVLLAMGLNQVMPTNVAIPFKLL  210
            D +++L PAFTLS+L +AFKIG+LL++ FV IDLI++N+LLAMG+  V P  +++PFKLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  211  LFVVMDGWSTLIHGLILTY  229
            +FV++DGWS ++  L+ +Y
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

143) sctR in NC_020127


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  156 bits (575),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 94/185 (51%), Positives = 139/185 (76%), Gaps = 1/185 (0%)

Query  20   PFVIMMVTSYVKIVVVTSLIRNALGVQQVPPAIVMNGLAIILSIFIMAPVYMKMEDLYLK  79
            P++++M T+++K+ VV SL+RNALGVQQVPP I + GLA++L+IFIMAPV + ++    +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  80   TALPSSPAALEVIKALYDATPPLREFLIRNADESTIRGLMVTAKRIWPKDQHETISRNNL  139
              L++  +AL       +A  P R+FL RN+D   +  +    +  WP   ++++  ++L
Sbjct  81   EELSNDIGALAHQIDQ-NALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSL  139

Query  140  LIIIPAFTITELTKSFQIGFLLYLPFVAIDLVVSNILLAMGMMMVSPMTISLPFKLLLFV  199
            LI++PAFT+++L  +F+IG+LL+LPFVAIDL+VSNILLAMGMMMVSPMT+SLPFKLL+FV
Sbjct  140  LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFV  199

Query  200  TLDGW  204
             +DGW
Sbjct  200  LVDGW  204

144) SctR in NC_008011


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  156 bits (575),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 94/185 (51%), Positives = 139/185 (76%), Gaps = 1/185 (0%)

Query  20   PFVIMMVTSYVKIVVVTSLIRNALGVQQVPPAIVMNGLAIILSIFIMAPVYMKMEDLYLK  79
            P++++M T+++K+ VV SL+RNALGVQQVPP I + GLA++L+IFIMAPV + ++    +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  80   TALPSSPAALEVIKALYDATPPLREFLIRNADESTIRGLMVTAKRIWPKDQHETISRNNL  139
              L++  +AL       +A  P R+FL RN+D   +  +    +  WP   ++++  ++L
Sbjct  81   EELSNDIGALAHQIDQ-NALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSL  139

Query  140  LIIIPAFTITELTKSFQIGFLLYLPFVAIDLVVSNILLAMGMMMVSPMTISLPFKLLLFV  199
            LI++PAFT+++L  +F+IG+LL+LPFVAIDL+VSNILLAMGMMMVSPMT+SLPFKLL+FV
Sbjct  140  LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFV  199

Query  200  TLDGW  204
             +DGW
Sbjct  200  LVDGW  204

145) H045_00190 in NC_020209


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  156 bits (575),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 96/201 (48%), Positives = 149/201 (75%), Gaps = 2/201 (0%)

Query  18   MSLLPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFVMAPVGYQIAE  77
            +S+LP+L+V+ TAFLK+ +V+ + RNA+GVQQVPP++AI G+AL  T+F+MAPVG ++  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   NLKTSPLDMSNVQTL-QATGLVAIQPLRTFMTRNTDPDVLTHLQENSARMWPPEMAQSTQ  136
             L+   L  +++ +L +  +  A+ P R F+ RNTD + +T +++     WP    +S +
Sbjct  77   RLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK  135

Query  137  REDWVLLIPAFVVSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPLKL  196
             +  ++L+PAF +SQL+ +F IG+L+++PF+ IDLIVSN+LLA+GM MVSPMT+SLP+KL
Sbjct  136  PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  197  LLFVMVSGWSRLLDSLFLSYL  217
            L+FV+V GWS +L+ L  SYL
Sbjct  196  LVFVLVDGWSLVLGQLVGSYL  216

146) hrcR in NC_013971


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  156 bits (575),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 94/202 (47%), Positives = 156/202 (78%), Gaps = 4/202 (1%)

Query  18   LSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFNQMQQ  77
            LS++P+L+++ T FLK+S+V+ + RNA+GVQQVPPN+A+YG+AL  T+F+MAPV  ++Q 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   QF--SQVPADLSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSV  135
            ++   +++ D++++ +      N++ P + F+ +NTD + +  +++     WP    DSV
Sbjct  77   RLQNEELSNDIGALAHQIDQ--NALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  136  NKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLK  195
            + D+LL+++PAF LS+L+ +FKIG+L+++PF+ IDLIVSN+LLA+GM MV+PMTLSLP+K
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  196  MLLFVLINGWTRLLDGLFYSYL  217
            +L+FVL++GW+ +L+ L  SYL
Sbjct  195  LLVFVLVDGWSLVLGQLVGSYL  216

147) hcrR in NC_013961


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  156 bits (575),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 94/202 (47%), Positives = 156/202 (78%), Gaps = 4/202 (1%)

Query  18   LSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFNQMQQ  77
            LS++P+L+++ T FLK+S+V+ + RNA+GVQQVPPN+A+YG+AL  T+F+MAPV  ++Q 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   QF--SQVPADLSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSV  135
            ++   +++ D++++ +      N++ P + F+ +NTD + +  +++     WP    DSV
Sbjct  77   RLQNEELSNDIGALAHQIDQ--NALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  136  NKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLK  195
            + D+LL+++PAF LS+L+ +FKIG+L+++PF+ IDLIVSN+LLA+GM MV+PMTLSLP+K
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  196  MLLFVLINGWTRLLDGLFYSYL  217
            +L+FVL++GW+ +L+ L  SYL
Sbjct  195  LLVFVLVDGWSLVLGQLVGSYL  216

148) hrcR in NC_017445


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  156 bits (574),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 94/202 (47%), Positives = 155/202 (77%), Gaps = 4/202 (1%)

Query  18   LSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFNQMQQ  77
            LS++P+L+++ T FLK+S+V+ + RNA+GVQQVPPN+A+YG+AL  T+F+MAPV  ++Q 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   QF--SQVPADLSSMDNLKTSVSNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSV  135
            ++   +++ D++++ +      N++ P + F+ +NTD + +  +++     WP    DSV
Sbjct  77   RLQNEELSNDIGALAH--QIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  136  SKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLK  195
              D+LL+++PAF LS+L+ +FKIG+L+++PF+ IDLIVSN+LLA+GM MV+PMTLSLP+K
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  196  MLLFVLINGWTRLLDGLFYSYL  217
            +L+FVL++GW+ +L+ L  SYL
Sbjct  195  LLVFVLVDGWSLVLGQLVGSYL  216

149) hcrR in NC_017390


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  156 bits (574),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 94/202 (47%), Positives = 155/202 (77%), Gaps = 4/202 (1%)

Query  18   LSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFNQMQQ  77
            LS++P+L+++ T FLK+S+V+ + RNA+GVQQVPPN+A+YG+AL  T+F+MAPV  ++Q 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   QF--SQVPADLSSMDNLKTSVSNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSV  135
            ++   +++ D++++ +      N++ P + F+ +NTD + +  +++     WP    DSV
Sbjct  77   RLQNEELSNDIGALAH--QIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  136  SKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLK  195
              D+LL+++PAF LS+L+ +FKIG+L+++PF+ IDLIVSN+LLA+GM MV+PMTLSLP+K
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  196  MLLFVLINGWTRLLDGLFYSYL  217
            +L+FVL++GW+ +L+ L  SYL
Sbjct  195  LLVFVLVDGWSLVLGQLVGSYL  216

150) hrcR in NC_012214


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  156 bits (574),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 94/202 (47%), Positives = 155/202 (77%), Gaps = 4/202 (1%)

Query  18   LSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFNQMQQ  77
            LS++P+L+++ T FLK+S+V+ + RNA+GVQQVPPN+A+YG+AL  T+F+MAPV  ++Q 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   QF--SQVPADLSSMDNLKTSVSNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSV  135
            ++   +++ D++++ +      N++ P + F+ +NTD + +  +++     WP    DSV
Sbjct  77   RLQNEELSNDIGALAH--QIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  136  SKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLK  195
              D+LL+++PAF LS+L+ +FKIG+L+++PF+ IDLIVSN+LLA+GM MV+PMTLSLP+K
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  196  MLLFVLINGWTRLLDGLFYSYL  217
            +L+FVL++GW+ +L+ L  SYL
Sbjct  195  LLVFVLVDGWSLVLGQLVGSYL  216

151) Meso_0110 in NC_008254


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  155 bits (572),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 90/203 (45%), Positives = 151/203 (75%), Gaps = 8/203 (3%)

Query  20   LSFIPFIVVMGTAFTKISIVLMLLRNAIGVQQAPSGLVINSIALTLTVFVMVPVGNAIIT  79
            LS +P++VVMGTAF K+S+V+ LLRNA+GVQQ P+ + I ++AL LT+F+M PVG  + +
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  80   QVQQQQLGFTGWENVSQLYSVVSE----AFTGYLKQFSSPRELQFFMDAARKMWPETLHG  135
            ++Q+++L+    ++++ L   + +    ++ ++L++ +   ++ FF D  ++ WPE  ++
Sbjct  77   RLQNEELS----NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  136  QITTDNVFILLPAHVTSELTRAFQIAFLIFLPFVVVDMVVSNILLAMGAMMVPPMLVSLP  195
             +  D+++IL+PA   S+L  AF+I++L+FLPFV +D++VSNILLAMG MMV+PM +SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  196  IKILLFVAADGWALLLHNLVLSY  218
            +K+L+FV  DGW+L+L +LV SY
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSY  215

152) bglu_2g02340 in NC_012721


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  155 bits (571),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 146/199 (74%), Gaps = 0/199 (0%)

Query  17   ISLLPFVAMVVTSYAKVVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYVMAPIGMQASK  76
            +S+LP++ ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A+++++++MAP+G++   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  77   SLEGQQLASQPSQALIQAFGAAREPFRAFLEKHTQEREKRFFLRSAAVVWPKEQAQQLSE  136
             L+ ++L+++ +    Q    A  P+R FL+++T+  +  FF       WP    + +  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  137  HDLIVLAPSFTLSELTDAFKIGFLLYIAFIVVDLIIANVLLALGLNQVTPTNVAIPFKLL  196
            + L++L P+FTLS+L +AFKIG+LL+++F+ +DLI++N+LLA+G+  V+P  +++PFKLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  197  LFVVMDGWSTLIHGLVMTY  215
            +FV++DGWS ++  LV +Y
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

153) rscR in NC_012660


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  155 bits (570),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 96/198 (49%), Positives = 147/198 (75%), Gaps = 2/198 (1%)

Query  21   MPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALATTLFIMAPVGYEIAESVK  80
            +P+L+V+ TAFLK+ +V+ + RNA+GVQQVPP++AI G+AL  T+FIMAPVG ++   ++
Sbjct  20   LPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQ  79

Query  81   ALPLDLSNVQTL-LQTANEAIKPLRAFMLRNIDPDVLTHLLENTARLWPAQMAQEVQRED  139
               L  +++ +L  Q  ++A+ P R F+ RN D + +T + +     WP +  + V+ + 
Sbjct  80   NEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDS  138

Query  140  LILLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLF  199
            L++L+PAF LSQL+ +F IG+L+++PF+ IDLIVSN+LLA+GM MVSPMT+SLP+KLL+F
Sbjct  139  LLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVF  198

Query  200  VMVSGWSRLLDSLFLSYL  217
            V+V GWS +L+ L  SYL
Sbjct  199  VLVDGWSLVLGQLVGSYL  216

154) bgla_2g02730 in NC_015376


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  154 bits (568),  Expect = 4e-39, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 147/200 (74%), Gaps = 2/200 (1%)

Query  17   ISLLPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSIYVMAPIGMQASK  76
            +S+LP++ ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A++++I++MAP+G++   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  77   ALEGQQLASQPSQALIQAFGAAK-EPFRAFLVKHTAEREKRFFLRSAAVVWPKEQAQQLS  135
             L+ ++L+++ + AL + ++     P+R FL ++T   +  FF       WP    + + 
Sbjct  77   RLQNEELSNDIG-ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK  135

Query  136  ENDLIVLAPSFTLSELTDAFKIGFLLYIAFIVVDLIIANVLLALGLNQVTPTNVAIPFKL  195
             + L++L P+FTLS+L +AFKIG+LL+++F+ +DLI++N+LLA+G+  V+P  +++PFKL
Sbjct  136  PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  196  LLFVVMDGWSTLIHGLVMTY  215
            L+FV++DGWS ++  LV +Y
Sbjct  196  LVFVLVDGWSLVLGQLVGSY  215

155) spaP in NC_017731


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  154 bits (567),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 85/208 (41%), Positives = 154/208 (75%), Gaps = 2/208 (0%)

Query  1    MLALVSLATLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNGIAMLLSLFVMMP  60
            ++AL+ + ++LP+++  GT +LK+S+V+ ++RNA+GVQQVP+ +A+ G+A++L++F+M P
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  61   VVQDISHYMREEKVDFGNVESVDNFVD-GGLGRYKAYLQKYSDPELVQFFESVQQQRNEE  119
            V  D+   +++E +   ++ ++ + +D  +L  Y+ +LQ+ +D E V FF+ + Q++  E
Sbjct  70   VGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  120  PMDAEAHSATLFSLLPAYALSEVKSAFEIGFYIYLPFVVIDLVISSILLALGMMMMSPVT  179
                   + +L+ L+PA++LS+++ AF IG+ ++LPFV IDL++S+ILLA+GMMM+SP+T
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  180  ISVPVKLILFVAIDGWSLISKGLVMQYL  207
            +S+P KL++FV +DGWSL+   LV  YL
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

156) yscR in NC_016642


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  152 bits (560),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 99/190 (53%), Positives = 142/190 (75%), Gaps = 2/190 (1%)

Query  28   TSFIKLSVVLLLVRNALGVQQIPPNMALNALAIILSGYIMLPVFLQTFEILEKGNYSIAT  87
            T+F+KLSVV+ L+RNALGVQQ+PPN+A+ +LA++L+ +IM PV L+    L++ + S   
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  88   VEDMKTTFVAAKGPLEEFLAKHADSKEKAFFLEASRQLWPAEVADSMSADSIAILLPAYT  147
                      A  P  +FL +++D  + +FF +  ++ WP    DS+ +DS+ IL+PA+T
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  148  VSQLREAFEIGFLLYLPFLAIDLVVSNILLAMGMMMVSPLTISLPFKLFLFVAVDGWSRL  207
            +SQL EAF IG+LL+LPF+AIDL+VSNILLAMGMMMVSP+T+SLPFKL++FV VDGWS L
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS-L  206

Query  208  ILG-LIKTYV  216
            +LG L+ +Y+
Sbjct  207  VLGQLVGSYL  216

157) XC_3016 in NC_007086


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  151 bits (557),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 90/195 (47%), Positives = 140/195 (72%), Gaps = 1/195 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ T++ K+ VV++LLRNA+GVQQVPPN+ + G+AL+++ F+MAPVG++     QN
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  80   YSPGADNSRVVVLLD-ACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPDDLL  138
               + D + +   +D     P+R+FL ++T   + +FF    Q+ WP    D++KPD LL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  139  VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVA  198
            +L PAFTLS+L EAF+IG+LL+L F+ IDL+V+N L+AMG+  V+P  +++PFKLL+FV 
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  199  LDGWSMLIHGLVLSY  213
            +DGWS+++  LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

158) hrcR in NC_003902


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  151 bits (557),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 90/195 (47%), Positives = 140/195 (72%), Gaps = 1/195 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ T++ K+ VV++LLRNA+GVQQVPPN+ + G+AL+++ F+MAPVG++     QN
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  80   YSPGADNSRVVVLLD-ACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPDDLL  138
               + D + +   +D     P+R+FL ++T   + +FF    Q+ WP    D++KPD LL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  139  VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVA  198
            +L PAFTLS+L EAF+IG+LL+L F+ IDL+V+N L+AMG+  V+P  +++PFKLL+FV 
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  199  LDGWSMLIHGLVLSY  213
            +DGWS+++  LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

159) xccb100_3079 in NC_010688


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  151 bits (557),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 90/195 (47%), Positives = 140/195 (72%), Gaps = 1/195 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ T++ K+ VV++LLRNA+GVQQVPPN+ + G+AL+++ F+MAPVG++     QN
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  80   YSPGADNSRVVVLLD-ACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPDDLL  138
               + D + +   +D     P+R+FL ++T   + +FF    Q+ WP    D++KPD LL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  139  VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVA  198
            +L PAFTLS+L EAF+IG+LL+L F+ IDL+V+N L+AMG+  V+P  +++PFKLL+FV 
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  199  LDGWSMLIHGLVLSY  213
            +DGWS+++  LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

160) hrcR in NC_017271


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  151 bits (556),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 89/195 (46%), Positives = 140/195 (72%), Gaps = 1/195 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ T++ K+ VV++LLRNA+GVQQVPPN+ + G+AL+++ F+MAPVG++     QN
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  80   YSPGAENSRVVVLLD-ACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPDDLL  138
               + + + +   +D     P+R+FL ++T   + +FF    Q+ WP    D++KPD LL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  139  VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVA  198
            +L PAFTLS+L EAF+IG+LL+L F+ IDL+V+N L+AMG+  V+P  +++PFKLL+FV 
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  199  LDGWSMLIHGLVLSY  213
            +DGWS+++  LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

161) USDA257_c21640 in NC_018000


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  151 bits (557),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 96/215 (45%), Positives = 156/215 (73%), Gaps = 5/215 (2%)

Query  3    ETTTNLIPIIIIVSTIGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVALI  62
            +++ +LI++++++S +   PL VV  T+FLK+S+V+ L+RNALG+QQ PPN+ +YG+AL+
Sbjct  5    NSSYQLIALLFMLSVL---PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALV  61

Query  63   LTVYVTTPLVGEMYRTLSSEQVDVQSMDSMVRAADQLR-APLQAHLTRYTDENERQFFLQ  121
            LT+++ +P+  ++   L +E++  + ++++ +  DQ    P +  L R TD ++  FF +
Sbjct  62   LTIFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  122  ATERIWSEEARASVKTDSLLILVPAFVSSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMG  181
              +  W+E  R SVK DSLLIL+PAF  S+L  AF IG+LL+LPF+ IDLIVS +L+AMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  182  MMMVSPTLISIPLKIFLFVAVNGWSRLMHGLILSY  216
            MMMVSP  +S+P+K+++FV V+GWS ++  L+ SY
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

162) hrcR in NC_015856


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  151 bits (555),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 137/190 (73%), Gaps = 5/190 (2%)

Query  28   TSYTKIVVVLGLLRNALGLQQVPPTSVLNGVAIIISCFVMAPVGMEA---VKHAQLSSEQ  84
            T++ K+ VV++LLRNALG+QQVPP   + G+A++++ F+MAPVG++    +++ +LS++ 
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  85   TAGSQIMPLFDAAREPFRTFLRKHTSEREKAFFMRSARQIWPPERAAELKPDDLIVLAPA  144
             A ++ +   + A  P+R FL+++T   + +FF    ++ WP      +KPD L++L PA
Sbjct  88   GALAHQID--QNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145

Query  145  FVLSELTAAFKIGFLLYLCFIVIDLVIANVLMALGLSQVNPSNVAIPFKLLLFISLDGWS  204
            F LS+L  AFKIG+LL+L F+ IDL+++N+L+A+G+  V+P  +++PFKLL+F+ +DGWS
Sbjct  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205

Query  205  TLVHGLISTY  214
             ++  L+++Y
Sbjct  206  LVLGQLVGSY  215

163) rhcR in NC_012586


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  150 bits (554),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 95/215 (45%), Positives = 156/215 (73%), Gaps = 5/215 (2%)

Query  3    ETTTNLIPIIIIVSTIGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVALI  62
            +++ +LI++++++S +   PL VV  T+FLK+S+V+ L+RNALG+QQ PPN+ +YG+AL+
Sbjct  5    NSSYQLIALLFMLSVL---PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALV  61

Query  63   LTVYVTTPLVGEMYRTLSSEQVDMQSMDSMVRAANQLR-APLQAHLTRYTDENERQFFLQ  121
            LT+++ +P+  ++   L +E++  + ++++ +  +Q    P +  L R TD ++  FF +
Sbjct  62   LTIFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  122  ATERIWSEEARASVKTDSLLILVPAFVSSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMG  181
              +  W+E  R SVK DSLLIL+PAF  S+L  AF IG+LL+LPF+ IDLIVS +L+AMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  182  MMMVSPTLISIPLKIFLFVAVNGWSRLMHGLILSY  216
            MMMVSP  +S+P+K+++FV V+GWS ++  L+ SY
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

164) C770_GR4pC1264 in NC_019848


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  150 bits (552),  Expect = 7e-38, Method: Compositional matrix adjust.
 Identities = 93/200 (47%), Positives = 145/200 (73%), Gaps = 2/200 (1%)

Query  17   IGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVALILTVYVTTPLVGEMYR  76
            ++++PL VV  T+FLK+S+V+ L+RNALG+QQ PPN+ +YG+AL+LT+++ +P+  ++  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  77   TLSSEPVDVQSIDSMMRAADSLR-VPLQTHLKRYTDENERQFFMQATERIWSEEARAEVK  135
             L +E +  + I+++ +  D    VP +  L+R TD ++  FF +  +  W+E  R  VK
Sbjct  77   RLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK  135

Query  136  TDSLLILVPAFVSSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMGMMMVSPTLISIPLKI  195
             DSLLIL+PAF  S+L  AF IG+LL+LPF+ IDLIVS +L+AMGMMMVSP  +S+P+K+
Sbjct  136  PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  196  FLFVAVNGWSRLMHGLILSY  215
            ++FV V+GWS ++  L+ SY
Sbjct  196  LVFVLVDGWSLVLGQLVGSY  215

165) SFHH103_04957 in NC_016815


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  150 bits (552),  Expect = 8e-38, Method: Compositional matrix adjust.
 Identities = 95/215 (45%), Positives = 156/215 (73%), Gaps = 5/215 (2%)

Query  3    ETTTNLIPIIIIVSTIGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVALI  62
            +++ +LI++++++S +   PL VV  T+FLK+S+V+ L+RNALG+QQ PPN+ +YG+AL+
Sbjct  5    NSSYQLIALLFMLSVL---PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALV  61

Query  63   LTVYVTTPLVGEMYRTLSSEQVDMQSMDSMMRAANQLR-APLQAHLTRYTDENERQFFLQ  121
            LT+++ +P+  ++   L +E++  + ++++ +  +Q    P +  L R TD ++  FF +
Sbjct  62   LTIFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  122  ATERIWSEEARASVKTDSLLILVPAFVSSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMG  181
              +  W+E  R SVK DSLLIL+PAF  S+L  AF IG+LL+LPF+ IDLIVS +L+AMG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  182  MMMVSPTLISIPLKIFLFVAVNGWSRLMHGLILSY  216
            MMMVSP  +S+P+K+++FV V+GWS ++  L+ SY
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

166) hrcR in NC_006834


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  150 bits (551),  Expect = 9e-38, Method: Compositional matrix adjust.
 Identities = 89/195 (46%), Positives = 140/195 (72%), Gaps = 1/195 (0%)

Query  32   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  91
            P+  ++ T++ K+ VV++LLRNA+GVQQVPPN+ + G+AL+++ F+MAPVG++     QN
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  92   YGAGSDNSRIVVLLD-ACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKSDDLL  150
               ++D + +   +D     P+R+FL ++T   + +FF    Q+ WP     ++K+D LL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  151  ILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVA  210
            IL PAFTLS+L EAF+IG+LL+L F+ IDL+V+N L+AMG+  V+P  +++PFKLL+FV 
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  211  MDGWSMLIHGLVLSY  225
            +DGWS+++  LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

167) hrcR in NC_003919


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  149 bits (549),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 88/195 (46%), Positives = 140/195 (72%), Gaps = 1/195 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ T++ K+ VV++LLRNA+GVQQVPPN+ + G+AL+++ F+MAPVG++     QN
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  80   YGAGSDNSRVVVLLD-ACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLL  138
               ++D + +   +D     P+R+FL ++T   + +FF    Q+ WP     ++K+D LL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  139  VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVA  198
            +L PAFTLS+L EAF+IG+LL+L F+ IDL+V+N L+AMG+  V+P  +++PFKLL+FV 
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  199  MDGWSMLIHGLVLSY  213
            +DGWS+++  LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

168) hrcR in NC_016010


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  149 bits (549),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 88/195 (46%), Positives = 140/195 (72%), Gaps = 1/195 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ T++ K+ VV++LLRNA+GVQQVPPN+ + G+AL+++ F+MAPVG++     QN
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  80   YGAGSDNSRVVVLLD-ACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLL  138
               ++D + +   +D     P+R+FL ++T   + +FF    Q+ WP     ++K+D LL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  139  VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVA  198
            +L PAFTLS+L EAF+IG+LL+L F+ IDL+V+N L+AMG+  V+P  +++PFKLL+FV 
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  199  MDGWSMLIHGLVLSY  213
            +DGWS+++  LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

169) XAC29_02060 in NC_020800


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  149 bits (549),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 88/195 (46%), Positives = 140/195 (72%), Gaps = 1/195 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ T++ K+ VV++LLRNA+GVQQVPPN+ + G+AL+++ F+MAPVG++     QN
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  80   YGAGSDNSRVVVLLD-ACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLL  138
               ++D + +   +D     P+R+FL ++T   + +FF    Q+ WP     ++K+D LL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  139  VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVA  198
            +L PAFTLS+L EAF+IG+LL+L F+ IDL+V+N L+AMG+  V+P  +++PFKLL+FV 
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  199  MDGWSMLIHGLVLSY  213
            +DGWS+++  LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

170) hrcR in NC_007508


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  149 bits (549),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 88/195 (46%), Positives = 140/195 (72%), Gaps = 1/195 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ T++ K+ VV++LLRNA+GVQQVPPN+ + G+AL+++ F+MAPVG++     QN
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  80   YGAGSDNSRVVVLLD-ACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLL  138
               ++D + +   +D     P+R+FL ++T   + +FF    Q+ WP     ++K+D LL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  139  VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVA  198
            +L PAFTLS+L EAF+IG+LL+L F+ IDL+V+N L+AMG+  V+P  +++PFKLL+FV 
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  199  MDGWSMLIHGLVLSY  213
            +DGWS+++  LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

171) hrcR in NC_020815


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  149 bits (549),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 88/195 (46%), Positives = 140/195 (72%), Gaps = 1/195 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ T++ K+ VV++LLRNA+GVQQVPPN+ + G+AL+++ F+MAPVG++     QN
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  80   YGAGSDNSRVVVLLD-ACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLL  138
               ++D + +   +D     P+R+FL ++T   + +FF    Q+ WP     ++K+D LL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  139  VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVA  198
            +L PAFTLS+L EAF+IG+LL+L F+ IDL+V+N L+AMG+  V+P  +++PFKLL+FV 
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  199  MDGWSMLIHGLVLSY  213
            +DGWS+++  LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

172) XOO_0095 in NC_007705


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  149 bits (549),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 89/195 (46%), Positives = 140/195 (72%), Gaps = 1/195 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ T++ K+ VV++LLRNA+GVQQVPPN+ + G+AL+++ F+MAPVG++     QN
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  80   YGAGSDNSRIVVLLD-ACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKSDDLL  138
               ++D + +   +D     P+R+FL ++T   + +FF    Q+ WP     ++K+D LL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  139  ILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVA  198
            IL PAFTLS+L EAF+IG+LL+L F+ IDL+V+N L+AMG+  V+P  +++PFKLL+FV 
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  199  MDGWSMLIHGLVLSY  213
            +DGWS+++  LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

173) epaP in NC_010717


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  149 bits (549),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 89/195 (46%), Positives = 140/195 (72%), Gaps = 1/195 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ T++ K+ VV++LLRNA+GVQQVPPN+ + G+AL+++ F+MAPVG++     QN
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  80   YGAGSDNSRIVVLLD-ACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKSDDLL  138
               ++D + +   +D     P+R+FL ++T   + +FF    Q+ WP     ++K+D LL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  139  ILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVA  198
            IL PAFTLS+L EAF+IG+LL+L F+ IDL+V+N L+AMG+  V+P  +++PFKLL+FV 
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  199  MDGWSMLIHGLVLSY  213
            +DGWS+++  LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

174) S58_72190 in NC_020453


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  149 bits (549),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 90/215 (42%), Positives = 153/215 (72%), Gaps = 7/215 (3%)

Query  2    TQFNLFAVLAVIAGLGLVTFAVVTMTSFVKIAVVLFLIRNALGVQQTPPNLVLYAIALVL  61
            + ++L+A+L +++ L L+   VV  T+F+K++VV+ L+RNALGVQQ PPN+ +Y++ALVL
Sbjct  6    SSYQLIALLFMLSVLPLL---VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVL  62

Query  62   TAYVSAPLVQAVYERVNDR--ATEFQTFADWKDAAERATQPVREHLSRFTTVAERDFFVT  119
            T ++ AP+   V  R+++   + ++ ++A+  +  + A  P R+ L R T + +  FF  
Sbjct  63   TIFIMAPVGLDVQARLQNEELSNDIGALAH--QIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  120  ATGSLWPDSSRAKLSSEDLVILVPSFMSSELKRAFEIGFLLYLPFIAIDLVVSAVLMSLG  179
               + WP+  R  + ++ L+IL+P+F  S+L+ AF IG+LL+LPF+AIDL+VS +L+++G
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  180  MSMVPPSTISVPFKLFLFVMVEGWSKLMHGLVLSY  214
            M MV+P T+S+PFKL++FV+V+GWS ++  LV SY
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

175) hrcR in NC_017267


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  149 bits (548),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 89/195 (46%), Positives = 140/195 (72%), Gaps = 1/195 (0%)

Query  20   PFAALVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ T++ K+ VV++LLRNA+GVQQVPPN+ + G+AL+++ F+MAPVG++     QN
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  80   YGAGSDNSRIVVLLD-ACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLL  138
               ++D + +   +D     P+R+FL ++T   + +FF    Q+ WP     ++K+D LL
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  139  ILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVA  198
            IL PAFTLS+L EAF+IG+LL+L F+ IDL+V+N L+AMG+  V+P  +++PFKLL+FV 
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  199  MDGWSILIHGLVLSY  213
            +DGWS+++  LV SY
Sbjct  201  VDGWSLVLGQLVGSY  215

176) fliP in NC_017030


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  149 bits (549),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 89/208 (43%), Positives = 152/208 (74%), Gaps = 9/208 (4%)

Query  68   MSLVPFALMMVTSFVKISVVLSIVRSALGTQQIPPTQVITGLAIILTVYIMAPVGQEMYR  127
            +S++P+ ++M T+F+K+SVV+S++R+ALG QQ+PP   I GLA++LT++IMAPVG +   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLD---  73

Query  128  AGGIDIWSRGTSVFSSETVGTMLGAADKSK-EPLREFLMKKVTNKDRTLFYSLAKKMRKE  186
               ++ + +   +  S+ +G++    D++   P R+FL ++    + T+F  + ++ + E
Sbjct  74   ---VQARLQNEEL--SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  187  EDRKDIGPNDFMVIVPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTT  246
              R  + P+ +++++PAF +S+L+EAF+IG+LLF+PF+ ID++V+NILLA+GM M+SP T
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  247  ISMPFKLLLFVLVDGWYLIAKGLVIGYL  274
            +S+PFKLL+FVLVDGW L+   LV +YL
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

177) xsaW in NC_013722


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  149 bits (548),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 92/218 (43%), Positives = 150/218 (69%), Gaps = 12/218 (5%)

Query  9    LIALIAVMALIPFLFASGTCFLKFSVVFVLLRNAIGMQQVPSNMVLNSIALMLAAFVMQP  68
            LIAL+ +++++P+L   GT FLK+SVVF LLRNA+G+QQVP+N+ + ++AL+L+ F+M P
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  69   VITSTFHAFQETDQVTSMDEVGPYLT-TVLTPYRQYLAKYADKELVEFFQRVPSTVQNTP  127
            V       +Q+ +    ++ ++  +    L PYR++L + +D E V FF+ +        
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDI--------  121

Query  128  TTPGQGTANQSAIHQVQQPSLYALLPAYGLTELRDAFRIGFYLYLPFVVIDLIVSNVLLA  187
                Q    +   + V+  SL  L+PA+ L++L +AF+IG+ L+LPFV IDLIVSN+LLA
Sbjct  122  ---VQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLA  178

Query  188  LGMMMMSPVTISMPIKLILFVALDGWTLVSKDLMEPYM  225
            +GMMM+SP+T+S+P+KL++FV +DGW+LV  +L+ +Y+
Sbjct  179  MGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

178) MYSTI_02838 in NC_020126


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  148 bits (545),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 87/208 (42%), Positives = 154/208 (75%), Gaps = 9/208 (4%)

Query  68   MGLVPFALMMVTSFVKISVVLSIVRSALGTQQIPPTQVITGLAVILTVYIMAPVGTAMYR  127
            ++++P+ ++M T+F+K+SVV+S++R+ALG QQ+PP   I GLA++LT++IMAPVG     
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGL----  72

Query  128  AAEIDVWAKGPGVFSSSTVGSLLEGASKSK-EPLRAWLMKKVTVKDRSLFYNLAKKMRTG  186
              +++ + +   +  S+ +G+L +   ++   P R  L ++  + + ++F ++ ++ +  
Sbjct  73   --DVQARLQNEEL--SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  187  EDRDSVQSQDFMVIVPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTT  246
              RDSV+++ +++++PAF +S+L+EAF+IG+LLF+PF+ ID++V+NILLA+GM M+SP T
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  247  ISMPFKLLLFVLVDGWYLIAKGLVVGYL  274
            +S+PFKLL+FVLVDGW L+   LV +YL
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

179) Marme_1071 in NC_015276


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  147 bits (543),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 89/198 (45%), Positives = 146/198 (74%), Gaps = 4/198 (2%)

Query  22   PIMLIVCSAFLKISMVLMITRNAMGVQQVPPNMAIYGIALAATMFVMAPVFSDIGNKVK-  80
            P+++++ +AFLK+S+V+ + RNA+GVQQVPPN+AIYG+AL  T+F+MAPV  D+  +++ 
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   -ETPPDFSSLEGMQTSANKIVGPLQAFMSRNSNPDVTTHMMDNTARLWPKEMASKVTKDD  139
             E + D+++L   +   ++ + P + F+ RN++ +  T   D     WP      V  D 
Sbjct  81   EELSNDIGALA--HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDS  138

Query  140  LMIVIPSFMLSELKAGLQIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPLKILLF  199
            L+I++P+F LS+L+ +++IG+L+++PF+ IDLIVSN+LLA+GM MVSPMT+SLP+K+L+F
Sbjct  139  LLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVF  198

Query  200  VLVDGWGRLLDGLFYTYI  217
            VLVDGW+ +L+ L  +Y+
Sbjct  199  VLVDGWSLVLGQLVGSYL  216

180) STAUR_3046 in NC_014623


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  147 bits (541),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 90/205 (44%), Positives = 149/205 (73%), Gaps = 9/205 (4%)

Query  74   VPFMLMMVTSFVKISVVLSIVRSALGTQQIPPTQVITGLAVILTVYIMAPVGQEMYKAAK  133
            +P++++M T+F+K+SVV+S++R+ALG QQ+PP   I GLA++LT++IMAPVG +      
Sbjct  20   LPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLD------  73

Query  134  VDIWAKGPSLLSSETVGTLLEAADRSK-EPLRDFLVKKVKNKDRALFFHLAKKMRKAEDR  192
            V+ + +   L  S+ +G+L +  D++   P RDFL ++    + ++F ++ ++ +    R
Sbjct  74   VQARLQNEEL--SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYR  131

Query  193  KDIGDRDFMIIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTTISM  252
              +    ++I++PAF +S+L+EAF+IG+LLF+PF+ ID++V+NILLA+GM M+SP T+S+
Sbjct  132  DSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSL  191

Query  253  PFKLLLFVLVDGWYLIAKGLVVGYL  277
            PFKLL+FVLVDGW L+   LV +YL
Sbjct  192  PFKLLVFVLVDGWSLVLGQLVGSYL  216

181) hrcR in NC_004578


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  146 bits (536),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 94/200 (47%), Positives = 147/200 (74%), Gaps = 0/200 (0%)

Query  1    MSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHEMQQ  60
            +S++P+L+++ TAFLK+++ + + RNA+GVQQVPPN+A+YG+AL  T+F+MAPV+ ++Q 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  61   RVHDHPLELGNTEKLQASARTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEMADQASK  120
            R++++ L  +     +   +  + P + F+ RNTD + V+ + D  Q  WP    D    
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  121  NDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTlslplkll  180
            + LL+ +PAF LS+L+ +F IG+L+++PF+ IDLIVSN+LLA+GM MVSPMTLSLP+KLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  181  lFVMVSGWSRLLDSLFYSYM  200
            +FV+V GWS +L+ L  SY+
Sbjct  197  VFVLVDGWSLVLGQLVGSYL  216

182) MXAN_2447 in NC_008095


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  146 bits (538),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 153/208 (74%), Gaps = 9/208 (4%)

Query  25   MGLVPFALMMATSFVKISVVLSIVRSALGTQQIPPTQVITGLAIILTVYIMAPVGQQMYR  84
            ++++P+ ++M+T+F+K+SVV+S++R+ALG QQ+PP   I GLA++LT++IMAPVG     
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVG-----  71

Query  85   AAGLDIWAKGPGVFSSETVGSMLGAANKSK-EPLREWLIKKVTTKDRALFFNLAKKMRKG  143
               LD+ A+      S+ +G++    +++   P R+ L ++    + ++F ++ ++ +  
Sbjct  72   ---LDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  144  EDRDAVESNDFMVIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTT  203
              RD+V ++ +++++PAF +S+L+EAF+IG+LLF+PF+ ID++V+NILLA+GM M+SP T
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  204  ISMPFKLLLFVLVDGWYLIAKGLVVGYL  231
            +S+PFKLL+FVLVDGW L+   LV +YL
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

183) rhcR in NC_004463


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  146 bits (539),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 94/199 (48%), Positives = 141/199 (71%), Gaps = 0/199 (0%)

Query  18   LGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAALILTVFISAPVFEQTYN  77
            L++L++ VV  TAF+K+SVV+ L+RNALG Q +PPNI +YG AL+LT+FI APV  +   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   RLTDPQLRYQSFDDWVMAAKEGQEPLRVHLKKFTNEEQRRFFLSSTEHVWSEEMRGSVTA  137
            RL + +L  +         +++  P R  L++ T+ EQ  FF    ++ W+E  R+SV +
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  138  DDFSILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAMGMSMVSPTVISVPFKLF  197
            D + IL+P+F +S+L+ +F IG+LL+LPF++IDLIV+ IL+AMGM MVSP  +S+PFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  198  LFVTIDGWSRLMHGLVLSY  216
            +FV +DGWS ++  LV SY
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

184) rhcR in NC_017249


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  146 bits (539),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 94/199 (48%), Positives = 141/199 (71%), Gaps = 0/199 (0%)

Query  18   LGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAALILTVFISAPVFEQTYN  77
            L++L++ VV  TAF+K+SVV+ L+RNALG Q +PPNI +YG AL+LT+FI APV  +   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   RLTDPQLRYQSFDDWVMAAKEGQEPLRVHLKKFTNEEQRRFFLSSTEHVWSEEMRGSVTA  137
            RL + +L  +         +++  P R  L++ T+ EQ  FF    ++ W+E  R+SV +
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  138  DDFSILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAMGMSMVSPTVISVPFKLF  197
            D + IL+P+F +S+L+ +F IG+LL+LPF++IDLIV+ IL+AMGM MVSP  +S+PFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  198  LFVTIDGWSRLMHGLVLSY  216
            +FV +DGWS ++  LV SY
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

185) hrcR in NC_004547


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  145 bits (533),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 98/201 (49%), Positives = 153/201 (77%), Gaps = 2/201 (0%)

Query  18   LSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVFQDISK  77
            LS++PL++++ T FLK+++V+ + RNA+GVQQVPPN+A+YG+AL  T+F+MAPV  D+  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   RVQEKPLDMTDITSLQASVT-YGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLSEKVN  136
            R+Q+  L   DI +L   +   +L P + F+ RN D + +T +++   + WP    + V+
Sbjct  77   RLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK  135

Query  137  TQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTlslplkl  196
             ++LL+++PAF LS+L+ +FKIG+L+++PF+ IDLIVSN+LLA+GM MV+PMTLSLP+KL
Sbjct  136  PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  197  llfvlVNGWTRLLDGLFYSYL  217
            L+FVLV+GW+ +L+ L  SYL
Sbjct  196  LVFVLVDGWSLVLGQLVGSYL  216

186) sctR in NC_014225


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  145 bits (535),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 156/213 (74%), Gaps = 9/213 (4%)

Query  83   AVLTILSMLPFIVMILTSFMKIVIVLSLLRNALGVQQAPPNQIINGVGLMLSMFIMYPTV  142
            A+L +LS+LP++V++ T+F+K+ +V+SLLRNALGVQQ PPN  I G++L+L++FIM P  
Sbjct  12   ALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVG  71

Query  143  VEMYEVSQKATQEMQAPDSVISSGSSTYILTIADATKEPLRTFLIDNSSVRHRALFFRMA  202
            +++         + +  +  +S++ ++    I + +  P R FL  N+ + + ++F  + 
Sbjct  72   LDV---------QARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  203  YKVLPEKYRPNLKPEDFIIVVPSFITSQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMM  262
             +  PE+YR ++KP+ ++I++P+F  SQL++AF IG+L+++PF  IDL+ SNILLAMGMM
Sbjct  123  QNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMM  182

Query  263  MLSPVTISMPLKLFLLVMLDGWTLLVEGLVNTF  295
            M+SP+T+S+P+KL+++V++DGW+L++  LV ++
Sbjct  183  MVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

187) PC1_2212 in NC_012917


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  145 bits (532),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 98/201 (49%), Positives = 153/201 (77%), Gaps = 2/201 (0%)

Query  18   LSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFQDISK  77
            LS++PL++++ T FLK+++V+ + RNA+GVQQVPPN+A+YG+AL  T+F+MAPV  D+  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   RVQEKPLDMTDITSLQASVT-YGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLSEKVN  136
            R+Q+  L   DI +L   +   +L P + F+ RN D + +T +++   + WP    + V+
Sbjct  77   RLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK  135

Query  137  TQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTlslplkl  196
             ++LL+++PAF LS+L+ +FKIG+L+++PF+ IDLIVSN+LLA+GM MV+PMTLSLP+KL
Sbjct  136  PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  197  llfvlVNGWTRLLDGLFYSYL  217
            L+FVLV+GW+ +L+ L  SYL
Sbjct  196  LVFVLVDGWSLVLGQLVGSYL  216

188) PCC21_022910 in NC_018525


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  145 bits (532),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 98/201 (49%), Positives = 153/201 (77%), Gaps = 2/201 (0%)

Query  18   LSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFQDISK  77
            LS++PL++++ T FLK+++V+ + RNA+GVQQVPPN+A+YG+AL  T+F+MAPV  D+  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   RVQEKPLDMTDITSLQASVT-YGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLSEKVN  136
            R+Q+  L   DI +L   +   +L P + F+ RN D + +T +++   + WP    + V+
Sbjct  77   RLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK  135

Query  137  TQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTlslplkl  196
             ++LL+++PAF LS+L+ +FKIG+L+++PF+ IDLIVSN+LLA+GM MV+PMTLSLP+KL
Sbjct  136  PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  197  llfvlVNGWTRLLDGLFYSYL  217
            L+FVLV+GW+ +L+ L  SYL
Sbjct  196  LVFVLVDGWSLVLGQLVGSYL  216

189) hrcR in NC_014323


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  144 bits (530),  Expect = 4e-36, Method: Compositional matrix adjust.
 Identities = 84/193 (44%), Positives = 134/193 (70%), Gaps = 3/193 (1%)

Query  28   TTSFLKISLVLLVLRNAIGVQQVPPTLAIYGIALALSVFIMAPTVQEVGKRAMAVDVSHP  87
             T+FLK+S+V+ +LRNA+GVQQVPP +AIYG+AL L++FIMAP   +V  R    ++S+ 
Sbjct  27   GTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSND  86

Query  88   AASRTVPILERAQDAFDPLRKFMLKMSHAEQREMFLASAKKLWPKEAAKDAQPTDALILI  147
             ++ +  I    Q+A+ P R F+ + ++ EQ   F    ++ WP       +P   LIL+
Sbjct  87   IGALAHQI---DQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  148  PAFVVSELQTGYEIGFLIYIPFVVIDLLISNLLMALGMQQVSPQTITIPLKLLLFTLVGG  207
            PAF +S+L+ ++ IG+L+++PFV IDL++SN+L+A+GM  VSP T+++P+KLL+F LV+G
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  208  WAKLLNALAMSYV  220
            W+ +L  L  SY+
Sbjct  204  WSLVLGQLVGSYL  216

190) Pmen_0046 in NC_009439


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  144 bits (528),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 96/200 (48%), Positives = 144/200 (72%), Gaps = 0/200 (0%)

Query  18   LSLIPFLLIVCTAFLKIAMTLMITRNAIGVQQVPPNMAIYGIALAATMFVMAPVAYEIQN  77
            LS++P+L+++ TAFLK+++ + + RNA+GVQQVPPN+AIYG+AL  T+F+MAPV+ ++Q 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   RLSDNPLDLSSTDSLQASAGNVVEPLQDFMVNNTDPDIATHLLENTQRMWPREMSEKASK  137
            RL ++ L        +    N + P +DF+  NTD +  T + +  Q  WP    +    
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  138  SDLLLAIPAFVLSELQAAFQIGFLIYIPFIVIDLIISNLLLALGMQMVSPMTISlplkll  197
              LL+ +PAF LS+L+ AF+IG+L+++PF+ IDLI+SN+LLA+GM MVSPMT+SLP+KLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  198  lfvlVDGWTRLLNSLFYSYM  217
            +FVLVDGW+ +L  L  SY+
Sbjct  197  VFVLVDGWSLVLGQLVGSYL  216

191) LILAB_19925 in NC_015711


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  144 bits (529),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 89/208 (43%), Positives = 152/208 (74%), Gaps = 9/208 (4%)

Query  68   MGLVPFALMMVTSFVKISVVLSIVRSALGTQQIPPTQVITGLAVILTVYIMAPVGTQMYR  127
            ++++P+ ++M T+F+K+SVV+S++R+ALG QQ+PP   I GLA++LT++IMAPVG     
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVG-----  71

Query  128  AAGLDIWAKGPGVFSSETVGSMLGAANKSK-EPLREWLMKKVTTKDRALFFNLAKKLRQG  186
               LD+ A+      S+ +G++    +++   P R+ L ++    + ++F ++ ++ +  
Sbjct  72   ---LDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  187  EDRDAVESDDFMVIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTT  246
              RD+V +D +++++PAF +S+L+EAF+IG+LLF+PF+ ID++V+NILLA+GM M+SP T
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  247  ISMPFKLLLFVLVDGWYLIAKGLVVGYL  274
            +S+PFKLL+FVLVDGW L+   LV +YL
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

192) Dalk_1007 in NC_011768


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  143 bits (525),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 85/188 (46%), Positives = 139/188 (74%), Gaps = 6/188 (3%)

Query  72   TSFTRLAVVFSFLRHALGTQQMPPNQVMVGLALFLTVFIMMPVWKDINTNALQPYLNEEI  131
            T+F +L+VVFS+LR+ALG QQ+PPN  + GLAL LT+FIM PV  D+++   +  L+++I
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  132  GD--QEAIEKAVTPLREFMFRHTREKDLALFVKIS----GEAKPNSPKDVTIWTLIPAFV  185
            G   ++  ++A+ P R+F+ R+T   ++++F  I      E   +S K  ++  L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  186  ISELTTAFMIGFIIYVPFLIIDMVVASVLLSMGMMMLPPVMISLPFKLMLFVLVDGWSLI  245
            +S+L  AF IG+++++PF+ ID++V+++LL+MGMMM++P+ +SLPFKL++FVLVDGWSL+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  246  VGSLVQSF  253
            +G LV S+
Sbjct  208  LGQLVGSY  215

193) BC1003_3642 in NC_014540


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  143 bits (525),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 84/199 (43%), Positives = 145/199 (73%), Gaps = 0/199 (0%)

Query  17   ISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGVAILVSIYVMAPVgmqamq  76
            +S++P++ ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A++++I++MAPVG++   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  77   smqgqaiagqPTQALIQVFSAAREPFRTFLQKHTNEREKRFFIRSANVVWPKEAASSLHE  136
             +Q + ++ +      Q+   A  P+R FLQ++T+  +  FF    +  WP     S+  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  137  NDLIVLAPAFTLTELTDAFKIGFLLYIAFIVIDLIIANVLLAMGLNQVTPTNVAIPFKLL  196
            + L++L PAFTL++L +AFKIG+LL+++F+ IDLI++N+LLAMG+  V+P  +++PFKLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  197  LFVVMDGWSTLIHGLVMTY  215
            +FV++DGWS ++  LV +Y
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

194) REMIM1_PE00285 in NC_021909


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  142 bits (524),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 87/186 (47%), Positives = 127/186 (69%), Gaps = 0/186 (0%)

Query  31   FIKVSVVLFLVRNALGTQTIPPNIVLYAAALILTLFISAPVIEQTYIRIADPKLRYQTLD  90
            F+K+SVV+ L+RNALG Q +PPNI +Y+ AL+LT+FI APV  +   R+ +  L  +   
Sbjct  30   FLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIGA  89

Query  91   DWVTAAEEGREPLRDYLKKFTSEEQRRFFLSSTKQVWPEEMRARTTPDDFAILVPSFLIS  150
                  +++  P RD+L++ T  EQ  FF    ++ WPE  R    PD + IL+P+F +S
Sbjct  90   LAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTLS  149

Query  151  ELKRAFEIGFLLYLPFICIDLIVTTILMAMGMSMVSPTVIAVPFKLFLFVTIDGWSQLMH  210
            +L+ AF IG+LL+LPF+ IDLIV+ IL+AMGM MVSP  +++PFKL++FV +DGWS ++ 
Sbjct  150  QLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLG  209

Query  211  GLVLSY  216
             LV SY
Sbjct  210  QLVGSY  215

195) BC1001_6056 in NC_015137


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  141 bits (520),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 83/199 (42%), Positives = 145/199 (73%), Gaps = 0/199 (0%)

Query  17   ISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGVAILVSLYVMAPVgmqamq  76
            +S++P++ ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A+++++++MAPVG++   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  77   smqgqaiagqPTQALIQVFSAAREPFRTFLQKHTNEREKRFFIRSANVVWPKDAAASLHE  136
             +Q + ++ +      Q+   A  P+R FLQ++T+  +  FF    +  WP     S+  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  137  NDLIVLAPAFTLTELTDAFKIGFLLYIAFIVIDLIIANVLLAMGLNQVTPTNVAIPFKLL  196
            + L++L PAFTL++L +AFKIG+LL+++F+ IDLI++N+LLAMG+  V+P  +++PFKLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  197  LFVVMDGWSTLIHGLVMTY  215
            +FV++DGWS ++  LV +Y
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

196) BUPH_00158 in NC_018672


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  141 bits (520),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 83/199 (42%), Positives = 145/199 (73%), Gaps = 0/199 (0%)

Query  17   ISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGVAILVSLYVMAPVgmqamq  76
            +S++P++ ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A+++++++MAPVG++   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  77   smqgqaiagqPTQALIQVFSTAREPFRTFLQKHTNEREKRFFIRSANVVWPKDAAASLHE  136
             +Q + ++ +      Q+   A  P+R FLQ++T+  +  FF    +  WP     S+  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  137  NDLIVLAPAFTLTELTDAFKIGFLLYIAFIVIDLIIANVLLAMGLNQVTPTNVAIPFKLL  196
            + L++L PAFTL++L +AFKIG+LL+++F+ IDLI++N+LLAMG+  V+P  +++PFKLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  197  LFVVMDGWSTLIHGLVMTY  215
            +FV++DGWS ++  LV +Y
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

197) rscR in NC_017911


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  141 bits (517),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 98/200 (49%), Positives = 145/200 (73%), Gaps = 0/200 (0%)

Query  18   LSLMPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFIMAPVGYEIAE  77
            LS++P+L+V+ TAFLK+ +V+ + RNA+GVQQVPP++AI G+AL  T+FIMAPVG ++  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   NLKASPLDMTNVQTFLSTGNEAINPLRAFMLRNVDPDVLTHLLENTARLWPAKMAQEVQR  137
             L+   L           +++A+ P R F+ RN D + +T + +     WP +  + V+ 
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  138  EDLILLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISlplkll  197
            + L++L+PAF LSQL+ +F IG+L+++PF+ IDLIVSN+LLA+GM MVSPMT+SLP+KLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  198  lfvlVSGWSRLLDSLFLSYL  217
            +FVLV GWS +L+ L  SYL
Sbjct  197  VFVLVDGWSLVLGQLVGSYL  216

198) Bcen_3526 in NC_008061


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  141 bits (518),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 96/202 (48%), Positives = 147/202 (73%), Gaps = 11/202 (5%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQA  80
            P+  +M T++ KL VV++LLR+ALG+QQVPPN+ + G+AL+L++FIMAPVG+ ++  LQ 
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   RHFDASGQLSTSDIGALA----DAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADG  136
             ++       ++DIGALA    + AL P +DFL  +T   +  FF     + WP    D+
Sbjct  81   EEL-------SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDS  133

Query  137  IKDDDLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPF  196
            +K D LL+L+P+FTL++L  AF+IG+++++ F+ +DL+V+NILLA+GM M+SP T+S+PF
Sbjct  134  VKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF  193

Query  197  KLLLFVALDGWSLLVHGLVLSY  218
            KLL+FV +DGWSL++  LV SY
Sbjct  194  KLLVFVLVDGWSLVLGQLVGSY  215

199) Bcen2424_4840 in NC_008543


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  141 bits (518),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 96/202 (48%), Positives = 147/202 (73%), Gaps = 11/202 (5%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQA  80
            P+  +M T++ KL VV++LLR+ALG+QQVPPN+ + G+AL+L++FIMAPVG+ ++  LQ 
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   RHFDASGQLSTSDIGALA----DAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADG  136
             ++       ++DIGALA    + AL P +DFL  +T   +  FF     + WP    D+
Sbjct  81   EEL-------SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDS  133

Query  137  IKDDDLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPF  196
            +K D LL+L+P+FTL++L  AF+IG+++++ F+ +DL+V+NILLA+GM M+SP T+S+PF
Sbjct  134  VKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF  193

Query  197  KLLLFVALDGWSLLVHGLVLSY  218
            KLL+FV +DGWSL++  LV SY
Sbjct  194  KLLVFVLVDGWSLVLGQLVGSY  215

200) bcscR in NC_011001


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  141 bits (518),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 96/202 (48%), Positives = 147/202 (73%), Gaps = 11/202 (5%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQA  80
            P+  +M T++ KL VV++LLR+ALG+QQVPPN+ + G+AL+L++FIMAPVG+ ++  LQ 
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   RHFDASGQLSTSDIGALA----DAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADG  136
             ++       ++DIGALA    + AL P +DFL  +T   +  FF     + WP    D+
Sbjct  81   EEL-------SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDS  133

Query  137  IKDDDLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPF  196
            +K D LL+L+P+FTL++L  AF+IG+++++ F+ +DL+V+NILLA+GM M+SP T+S+PF
Sbjct  134  VKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF  193

Query  197  KLLLFVALDGWSLLVHGLVLSY  218
            KLL+FV +DGWSL++  LV SY
Sbjct  194  KLLVFVLVDGWSLVLGQLVGSY  215

201) Bcenmc03_5444 in NC_010515


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  141 bits (518),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 96/202 (48%), Positives = 147/202 (73%), Gaps = 11/202 (5%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQA  80
            P+  +M T++ KL VV++LLR+ALG+QQVPPN+ + G+AL+L++FIMAPVG+ ++  LQ 
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   RHFDASGQLSTSDIGALA----DAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADG  136
             ++       ++DIGALA    + AL P +DFL  +T   +  FF     + WP    D+
Sbjct  81   EEL-------SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDS  133

Query  137  IKDDDLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPF  196
            +K D LL+L+P+FTL++L  AF+IG+++++ F+ +DL+V+NILLA+GM M+SP T+S+PF
Sbjct  134  VKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF  193

Query  197  KLLLFVALDGWSLLVHGLVLSY  218
            KLL+FV +DGWSL++  LV SY
Sbjct  194  KLLVFVLVDGWSLVLGQLVGSY  215

202) Bmul_3754 in NC_010086


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  141 bits (517),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 96/202 (48%), Positives = 146/202 (73%), Gaps = 11/202 (5%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGVQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQA  80
            P+  +M T++ KL VV++LLR+ALGVQQVPPN+ + G+AL+L++FIMAPVG+ ++  LQ 
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   RHFDASGQLSTADVGALA----DAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADG  136
             ++       + D+GALA    + AL P +DFL  +T   +  FF     + WP    D+
Sbjct  81   EEL-------SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDS  133

Query  137  IKDDDLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPF  196
            +K D LL+L+P+FTL++L  AF+IG+++++ F+ +DL+V+NILLA+GM M+SP T+S+PF
Sbjct  134  VKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF  193

Query  197  KLLLFVALDGWSLLVHGLVLSY  218
            KLL+FV +DGWSL++  LV SY
Sbjct  194  KLLVFVLVDGWSLVLGQLVGSY  215

203) yscR in NC_010805


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  141 bits (517),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 96/202 (48%), Positives = 146/202 (73%), Gaps = 11/202 (5%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGVQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQA  80
            P+  +M T++ KL VV++LLR+ALGVQQVPPN+ + G+AL+L++FIMAPVG+ ++  LQ 
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   RHFDASGQLSTADVGALA----DAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADG  136
             ++       + D+GALA    + AL P +DFL  +T   +  FF     + WP    D+
Sbjct  81   EEL-------SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDS  133

Query  137  IKDDDLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPF  196
            +K D LL+L+P+FTL++L  AF+IG+++++ F+ +DL+V+NILLA+GM M+SP T+S+PF
Sbjct  134  VKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF  193

Query  197  KLLLFVALDGWSLLVHGLVLSY  218
            KLL+FV +DGWSL++  LV SY
Sbjct  194  KLLVFVLVDGWSLVLGQLVGSY  215

204) Bamb_4215 in NC_008391


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  140 bits (515),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 95/202 (48%), Positives = 147/202 (73%), Gaps = 11/202 (5%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQS  80
            P+  +M T++ KL VV++LLR+ALG+QQVPPN+ + G+AL+L++FIMAPVG+ ++  LQ+
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   RHFDASGQLSTSDIGVLA----DAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADG  136
             ++       ++DIG LA    + AL P +DFL  +T   +  FF     + WP    D+
Sbjct  81   EEL-------SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDS  133

Query  137  IKDDDLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPF  196
            +K D LL+L+P+FTL++L  AF+IG+++++ F+ +DL+V+NILLA+GM M+SP T+S+PF
Sbjct  134  VKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF  193

Query  197  KLLLFVALDGWSLLVHGLVLSY  218
            KLL+FV +DGWSL++  LV SY
Sbjct  194  KLLVFVLVDGWSLVLGQLVGSY  215

205) BamMC406_4737 in NC_010552


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  140 bits (515),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 95/202 (48%), Positives = 147/202 (73%), Gaps = 11/202 (5%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQS  80
            P+  +M T++ KL VV++LLR+ALG+QQVPPN+ + G+AL+L++FIMAPVG+ ++  LQ+
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   RHFDASGQLSTSDIGVLA----DAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADG  136
             ++       ++DIG LA    + AL P +DFL  +T   +  FF     + WP    D+
Sbjct  81   EEL-------SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDS  133

Query  137  IKDDDLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPF  196
            +K D LL+L+P+FTL++L  AF+IG+++++ F+ +DL+V+NILLA+GM M+SP T+S+PF
Sbjct  134  VKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF  193

Query  197  KLLLFVALDGWSLLVHGLVLSY  218
            KLL+FV +DGWSL++  LV SY
Sbjct  194  KLLVFVLVDGWSLVLGQLVGSY  215

206) Dret_0584 in NC_013223


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  140 bits (515),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 156/208 (75%), Gaps = 9/208 (4%)

Query  50   IQILFLLTVLSLAPAILLMTTSFIRIVIVLSFIRQAMGVRQMPPNQVIIGLALFLTFFIM  109
            I +LF+L+VL+L   +++M T+F+++ +V+S++R+A+GV+Q+PPN  I GLAL LT+FIM
Sbjct  11   IALLFMLSVLPL---LVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIM  67

Query  110  SPVLSQMNQDALQPYLDQEIGD-AQAIER-AVSPMREFMFNQVRQKDLQLFVDISGSDQP  167
            +PV  +++    +  L ++IG  A+ I++ A+ P R+F+  +    ++ +F DI  +  P
Sbjct  68   APVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  168  ET-REEIRT---MLLVPAFMLSEIKRAFQIGFLIFVPFLVIDMVTASVLMSMGMLMLPPV  223
            E  R+ ++    ++L+PAF LS+++ AF+IG+L+F+PF+ ID++ +++L++MGM+M++P+
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  224  IISLPFKILLFVLVDGWHLVVGSLVRSF  251
             +SLPFK+L+FVLVDGW LV+G LV S+
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

207) fliP in NC_008435


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  140 bits (515),  Expect = 7e-35, Method: Compositional matrix adjust.
 Identities = 96/213 (46%), Positives = 148/213 (70%), Gaps = 10/213 (4%)

Query  46   ERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNAVILALALFLTG  105
            + + QLIALL +LS+ P +++M T+F ++ VV+SLLR ALG    PPN  I +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  106  FVMGPV---LQKSYDDGIKPLVANQITVEQAFER-AVDPLRGFMQKNVREKDLKLFLDLS  161
            F+M+PV   +Q   ++    L  +  ++ + +++ A+ P R+F+Q+N    ++ +F D+ 
Sbjct  65   FIMAPVGLDVQARLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  162  GEPPPA----TPDAMSLRILVPAFMISELKRAFEIGFLLFLPFLVIDLVVASVLMSMGMM  217
             +  P     +  + SL IL+PAF +S+L+ AF IG+LLFLPF+ IDL+V+++L++MGMM
Sbjct  123  QNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMM  182

Query  218  MLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY  250
            M++P+ +SLPFKL+ FVLVDGWSLV G LV SY
Sbjct  183  MVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

208) fliP in NC_018868


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  140 bits (515),  Expect = 7e-35, Method: Compositional matrix adjust.
 Identities = 91/209 (44%), Positives = 154/209 (74%), Gaps = 10/209 (4%)

Query  53   QILALMTGLTFLPAILMMMTSFTRIIIVFAILRQALGLQQSPSNQIMVGLALFLTLFIMS  112
            Q++AL+  L+ LP +++M T+F ++ +VF++LR+ALG+QQ P+N  + GLAL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  113  PVFNQVYTDAVEPYMNEQMDSKTAL--DSALVPMRSFMISQTRESDLKLFLDI------G  164
            PV  +V +   +  +++++++ +    ++ALVP R F+  +T   ++ +F DI       
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  165  RYPSLDSVDDVPLAVLMPAFITSELKTAFQIGFMIFIPFLVIDLVVASVLMAMGMMMLSP  224
            RY   DSV   +L +LMPAF  S+L+ AF+IG+++F+PF+ IDL+V+++L+AMGMMM+SP
Sbjct  129  RYR--DSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  225  LIISLPFKLMLFVLVDGWAMIIGSLAASF  253
            + +SLPFKL++FVLVDGW++++G L +S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

209) MYA_4948 in NC_017921


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  140 bits (513),  Expect = 8e-35, Method: Compositional matrix adjust.
 Identities = 92/199 (47%), Positives = 144/199 (73%), Gaps = 5/199 (2%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQA  80
            P+  +M T++ KL VV++LLR+ALG+QQVPPN+ + G+AL+L++FIMAPVG+ ++  LQ 
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   RHF-DAAGQLSTADIGVLADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKD  139
             ++ +  G L+      + + AL P +DFL  +T   +  FF     + WP    D++K 
Sbjct  81   EELSNDIGALAHQ----IDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  140  DDLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLL  199
            D LL+L+P+FTL++L  AF+IG+++++ F+ +DL+V+NILLA+GM M+SP T+S+PFKLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  200  LFVALDGWSLLVHGLVLSY  218
            +FV +DGWSL++  LV SY
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

210) Bcep1808_5328 in NC_009255


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  140 bits (513),  Expect = 8e-35, Method: Compositional matrix adjust.
 Identities = 92/199 (47%), Positives = 144/199 (73%), Gaps = 5/199 (2%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQA  80
            P+  +M T++ KL VV++LLR+ALG+QQVPPN+ + G+AL+L++FIMAPVG+ ++  LQ 
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  81   RHF-DAAGQLSTADIGVLADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKD  139
             ++ +  G L+      + + AL P +DFL  +T   +  FF     + WP    D++K 
Sbjct  81   EELSNDIGALAHQ----IDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  140  DDLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLL  199
            D LL+L+P+FTL++L  AF+IG+++++ F+ +DL+V+NILLA+GM M+SP T+S+PFKLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  200  LFVALDGWSLLVHGLVLSY  218
            +FV +DGWSL++  LV SY
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

211) hrcR in NC_014500


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  140 bits (513),  Expect = 9e-35, Method: Compositional matrix adjust.
 Identities = 93/201 (47%), Positives = 154/201 (77%), Gaps = 2/201 (0%)

Query  18   LSLIPLMMIVCTCFLKVSMVLMITRNAIGVQQVPPNMALYGIALAATLFVMAPVFSDIKQ  77
            LS++PL++++ T FLK+S+V+ + RNA+GVQQVPPN+A+YG+AL  T+F+MAPV  D++ 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   RFQDAPVDFSSLDALESSVT-KGIEPLQKFMSRNTDPDILTHLHENSLRMWPASMSEKIT  136
            R+Q+  +  + ++AL   +  +++ P + F+ RNTD + +T +++     WP    + + 
Sbjct  77   RLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK  135

Query  137  TQNILLVLPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTlslplkl  196
             +++L+++PA+ LS+L+ +FKIG+L+++PF+ IDLIVSN+LLA+GM MV+P TLSLP+KL
Sbjct  136  PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  197  llfvlVNGWTRLLDGLFYSYL  217
            L+FVLV+GW+ +L+ L  SYL
Sbjct  196  LVFVLVDGWSLVLGQLVGSYL  216

212) fliP in NC_011144


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  140 bits (513),  Expect = 9e-35, Method: Compositional matrix adjust.
 Identities = 90/207 (44%), Positives = 146/207 (71%), Gaps = 6/207 (2%)

Query  38   QLVGLLTVLSLAPSIVIMTTSFVRIVVVLSLLRTALGVQQSPPNAVIISLALFLTAIVMG  97
            QL++LL +LS+ P +V+M T+F+++ VV+SLLR ALGVQQ PPN  I +LAL LT ++M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  98   P-TFERSYQEGVKPLLDQQIELPQAFDAAG-APVKTFMLSQVDPEDLALFVRLSRIPRPA  155
            P  ++   +     L ++   L++ +D  +  P + F+  + D E++++F  + +  +P 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  156  TMEDT----PLRVVTPAFMISELKRAFEIGFLLFIPFLVIDLVVASVLMSMGMMMLPPVT  211
               D+    +L ++ PAF +S+L+ AF IG+LLF+PF+ IDL+V+++L++MGMMM++P+T
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  212  VSLPFKLIFFVLVDGWRLVAGSLVESF  238
            +SLPFKL+ FVLVDGW LV G LV S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

213) hrcR in NC_005773


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  139 bits (511),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 95/200 (48%), Positives = 149/200 (75%), Gaps = 0/200 (0%)

Query  16   LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHEIQQ  75
            LS++P+L+++ TAFLK+++ + + RNA+GVQQVPPN+A+YG+AL  T+F+MAPV+ ++Q 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  76   RVHEHPLELGSADKLQSSLKTVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKEMADQANK  135
            R++++ L  + +   +   +  + P + F+ RNTD + V+ + +  Q  WP    D  + 
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  136  NDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTlslplkll  195
            + LL+ +PAF LS+L+ +F IG+L+++PF+ IDLIVSN+LLA+GM MVSPMTLSLP+KLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  196  lfvlVSGWSRLLDSLFYSYM  215
            +FVLV GWS +L+ L  SY+
Sbjct  197  VFVLVDGWSLVLGQLVGSYL  216

214) Dd1591_1885 in NC_012912


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  139 bits (511),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 94/201 (47%), Positives = 154/201 (77%), Gaps = 2/201 (0%)

Query  18   LSLIPLSMIVCTCFLKISMVLMITRNAIGVQQVPPNMALYGIALAATVFVMAPVFSDIKQ  77
            LS++PL +++ T FLK+S+V+ + RNA+GVQQVPPN+A+YG+AL  T+F+MAPV  D++ 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   RFQDAPVDFSNLDALESSVTR-GIEPLQKFMSRNTDPDILTHLHENSLRMWPAAMSEKIT  136
            R+Q+  +  ++++AL   + + ++ P + F+ RNTD + +T +++     WP    + + 
Sbjct  77   RLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK  135

Query  137  TQSILLIVPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTlslplkl  196
             +S+L+++PA+ LS+L+ +FKIG+L+++PF+ IDLIVSN+LLA+GM MV+P TLSLP+KL
Sbjct  136  PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  197  llfvlVNGWTRLLDGLFYSYL  217
            L+FVLV+GW+ +L+ L  SYL
Sbjct  196  LVFVLVDGWSLVLGQLVGSYL  216

215) DaAHT2_1718 in NC_014216


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  139 bits (512),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 93/209 (45%), Positives = 152/209 (73%), Gaps = 9/209 (4%)

Query  44   LIELLLVFTVLAMAPAILLMMTCFTRLIVVFSFLRNAIGTQQMPPNQVLVGLAMFLTLFI  103
            LI LL++++VL   P +++M T F +L VVFS+LRNA+G QQ+PPN  + GLA+ LT+FI
Sbjct  10   LIALLFMLSVL---PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFI  66

Query  104  MAPVFSQINQTAIGPYMEEEIGA--EEALQLAAEPIREFMFKQTREKDLELFLGLARAPR  161
            MAPV  +++       + ++IGA  ++  Q A  P R+F+ ++T   ++ +F ++ +  +
Sbjct  67   MAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  162  PQT-KDDVPTH---ILIPAFMISELKTAFTIGFVLFLPFLVIDMVVASVLLSMGMMMLPP  217
            P+  +D V  +   IL+PAF +S+L+ AF IG++LFLPF+ ID++V+++LL+MGMMM++P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  218  IMVALPFKILLFVLVDGWYLIVGSLVRSF  246
            + ++LPFK+L+FVLVDGW L++G LV S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

216) Ser39006_2919 in NC_022268


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  139 bits (511),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 95/218 (44%), Positives = 165/218 (76%), Gaps = 5/218 (2%)

Query  1    MISGQFDPVMLALFLGALSLIPMMMIVCTCFLKIAMVLIITRNAIGVQQVPPNMALYGIA  60
            ++++ ++ + L LF+  LS++P+++++ T FLK+++V+ + RNA+GVQQVPPN+A+YG+A
Sbjct  3    LLNSSYQLIAL-LFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLA  59

Query  61   LASTLFIMAPVFNDIRQQFQDTPLDLNSIETLETTLG-SGITPLQKFMSRNSDPDILVHL  119
            L  T+FIMAPV  D++ ++Q+  L  N I +L   ++ +++ P + F+ RN+D + +  +
Sbjct  60   LVLTIFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFF  118

Query  120  HENSIRMWPASMSEKVNTQNILLVIPAFVLSELQAGFKIGFLVYIPFIVIDLIVSNVLLA  179
            ++     WP    + V+ +++L+++PAF LS+L+ +FKIG+L+++PF+ IDLIVSN+LLA
Sbjct  119  NDIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLA  178

Query  180  LGMQMVAPTTlslplklllfilVNGWTRLLDGLFYSYL  217
            +GM MV+P TLSLP+KLL+F+LV+GW+ +L+ L  SYL
Sbjct  179  MGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

217) epaP in NC_021174


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  139 bits (511),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 89/214 (42%), Positives = 146/214 (69%), Gaps = 6/214 (2%)

Query  3    LDQPLDLLALAVAMSMLPAACVLVTSFTKIAVVFALVKNAIGIQQVPSTLVTNALALIVT  62
            L+ + +L+AL   +S+LP   V+ T+F K++VVF+L++NA+G+QQVP+ +   +LAL++T
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  63   LYVMAPVLSDVAANASNGPARGQSRIEWLSGAVSG----PVGGFMKKHVDPREQERLIAS  118
            +++MAPV  DV A   N     +  I  L+  +      P  +F++++ D  +   +   
Sbjct  64   IFIMAPVGLDVQARLQNEELSND--IGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDI  121

Query  119  AAQIWPDTMAKSVKPDDFFILAPAFAISELTAAFKIGFVLYLAFVAIDLIVANILMAMGM  178
              + WP+    SVKPD ++IL PAF++S+L  AFKIG++L+L+FVAIDLIV+NIL+AMGM
Sbjct  122  VQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGM  181

Query  179  IMFSPTIVSIPLKIVLFALADGWSRLIQSLILTY  212
            +M SP  +S+P+K+++F L DGWS ++  L+ +Y
Sbjct  182  MMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

218) BTH_II0754 in NC_007650


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 84/206 (41%), Positives = 147/206 (72%), Gaps = 1/206 (0%)

Query  11   LIAVL-VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP  69
            LIA+L ++S++P++ ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A++++++IMAP
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  70   IGFaaqqqlqgqalSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVVWPKA  129
            +G+  Q +LQ + LS +      Q    A  P+R+FL  ++   +  FF       WP  
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  130  AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFVIVDLVIANVLMSMGMNQVQPTNV  189
                ++ D L++L PAFTL+Q+ +AF+IG++L+++FV +DL+++N+L++MGM  V P  +
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  190  AIPFKLMLFVVMDGWSTLVHGLVLTY  215
            ++PFKL++FV++DGWS ++  LV +Y
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

219) Plav_2568 in NC_009719


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  138 bits (508),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 89/215 (42%), Positives = 149/215 (70%), Gaps = 6/215 (2%)

Query  38   LGLTDHIVQIVALVTVLSLAPSILIMVTSFVRIIVVLSLLRTALGMQQSPPNAVLVSLAL  97
            + L +   Q++AL+ +LS+ P +++M T+F+++ VV+SLLR ALG+QQ PPN  + +LAL
Sbjct  1    MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  98   FLTAFVMTP-TFTTAYNEGIEPLMNQQIETAEAFERSS-VPFKTFMLSQVRKQDLQLFVD  155
             LT F+M+P  +        E L N+    A+ +++++ VP++ F+  +   +++ +F D
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  156  LSQTEQPEEATDI----GLQVIVPAFMISELRRAFEIGFLVFLPFIVIDMVVASVLMSMG  211
            + Q   PE   D     +L +++PAF +S+L  AF IG+L+FLPF+ ID++V+++L++MG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  212  MMMLPPVIISLPFKLIFFVLVDGWSLIAGSLVQSF  246
            MMM++P+ +SLPFKL+ FVLVDGWSL+ G LV S+
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

220) HrcR in NC_007005


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  138 bits (506),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 97/200 (49%), Positives = 147/200 (74%), Gaps = 0/200 (0%)

Query  18   LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ  77
            LS++P+L+++ TAFLK+++ + + RNA+GVQQVPPN+A+YG+AL  T+F+MAPV+ D+Q 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   RVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKEMADQASK  137
            R++++ L    +   +   +  + P + F+ RNTD + V+ + +  Q  WP    D    
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  138  DDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTlslplkll  197
            D LL+ +PAF LS+L+ +F IG+L+++PF+ IDLIVSN+LLA+GM MVSPMTLSLP+KLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  198  lfvlVSGWSRLLDSLFYSYM  217
            +FVLV GWS +L+ L  SY+
Sbjct  197  VFVLVDGWSLVLGQLVGSYL  216

221) spaP in NC_010694


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  138 bits (506),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 95/219 (44%), Positives = 165/219 (76%), Gaps = 6/219 (2%)

Query  1    MLNNEISLIALLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGVALVL  60
            +LN+   LIALL  +++LP+++  GT F+K+S+V+ ++RNALG+QQVP+N+++ G+ALVL
Sbjct  3    LLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVL  62

Query  61   TAFVMMPVCQRISGYIEAKSLDFNERGALSQLMNE-GIESYREYLVRYSDHNLILFFNNV  119
            T F+M PV   + + ++   L  N+ GAL++ +++ ++ +YR++L R +D + + FFN++
Sbjct  63   TIFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDI  121

Query  120  EHRNEVTLEDRVPDEELSQLSLLTLMPAYALSEIQSAFRIAFYLYIPFvvidlvvssill  179
             + +     +R  D   ++ SLL LMPA++LS+++ AF+I++ L++PFV IDL+VS+ILL
Sbjct  122  VQNK---WPERYRDSVKPD-SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILL  177

Query  180  alGMMMMSPVTISIPIKLILFVAMDGWALLAKGLITQYL  218
            A+GMMM+SP+T+S+P+KL++FV +DGW+L+   L+  YL
Sbjct  178  AMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

222) JCM7686_1775 in NC_022041


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  138 bits (506),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 92/219 (43%), Positives = 150/219 (69%), Gaps = 11/219 (5%)

Query  1    MDSPFPLLIAAAGLMVVPFIVVSLTAFVKIAVVLFLVRSALGVQQTPPNLVLYGVTIVLT  60
            ++S++ L+     L V+P++VV  TAF+K++VV+ L+R+ALGVQQ PPN+ +YG+++VLT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   GYVMSPV---LAASFAEMTNGGQMDALPPPSEWPGLIQRGLGPVREFLMRFTTPVDRAFF  117
             ++M+PV   + A + +   + +++AL+   +     Q +L P R+FL R T   + +FF
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQID-----QNALVPYRDFLQRNTDIEQVTFF  118

Query  118  LSAAEEM--HKTSGVVPSEQDLFILAPAFVTAELTRAFEIGVMLYLPFIVVDLVITNILT  175
                ++   ++  + V ++  L+IL PAF  ++L  AF IG++L+LPF+ +DL+++NIL 
Sbjct  119  NDIVQNKWPERYRDSVKPD-SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILL  177

Query  176  AMGMMMVSPTVISLPFKLLLFVAVDGWARLTHGLVMSYV  214
            AMGMMMVSP  +SLPFKLL+FV VDGW+ +   LV SY+
Sbjct  178  AMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

223) sctR in NC_006349


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  138 bits (507),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 147/206 (72%), Gaps = 1/206 (0%)

Query  11   LIAVL-VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP  69
            LIA+L ++S++P++ ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A++++++IMAP
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  70   IGFaaqqqlqgqalSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQA  129
            +G+  Q +LQ + LS +      Q    A  P+R FL  ++   +  FF       WP+ 
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  130  AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV  189
                ++ D L++L PAFTL+Q+ +AF+IG++L+++F+ +DL+++N+L++MGM  V P  +
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  190  AIPFKLMLFVVMDGWSTLVHGLVLTY  215
            ++PFKL++FV++DGWS ++  LV +Y
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

224) sctR in NC_008835


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  138 bits (507),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 147/206 (72%), Gaps = 1/206 (0%)

Query  11   LIAVL-VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP  69
            LIA+L ++S++P++ ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A++++++IMAP
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  70   IGFaaqqqlqgqalSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQA  129
            +G+  Q +LQ + LS +      Q    A  P+R FL  ++   +  FF       WP+ 
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  130  AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV  189
                ++ D L++L PAFTL+Q+ +AF+IG++L+++F+ +DL+++N+L++MGM  V P  +
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  190  AIPFKLMLFVVMDGWSTLVHGLVLTY  215
            ++PFKL++FV++DGWS ++  LV +Y
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

225) sctR in NC_009079


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  138 bits (507),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 147/206 (72%), Gaps = 1/206 (0%)

Query  11   LIAVL-VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP  69
            LIA+L ++S++P++ ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A++++++IMAP
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  70   IGFaaqqqlqgqalSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQA  129
            +G+  Q +LQ + LS +      Q    A  P+R FL  ++   +  FF       WP+ 
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  130  AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV  189
                ++ D L++L PAFTL+Q+ +AF+IG++L+++F+ +DL+++N+L++MGM  V P  +
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  190  AIPFKLMLFVVMDGWSTLVHGLVLTY  215
            ++PFKL++FV++DGWS ++  LV +Y
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

226) yscR in NC_009078


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  138 bits (507),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 147/206 (72%), Gaps = 1/206 (0%)

Query  11   LIAVL-VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP  69
            LIA+L ++S++P++ ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A++++++IMAP
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  70   IGFaaqqqlqgqalSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQA  129
            +G+  Q +LQ + LS +      Q    A  P+R FL  ++   +  FF       WP+ 
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  130  AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV  189
                ++ D L++L PAFTL+Q+ +AF+IG++L+++F+ +DL+++N+L++MGM  V P  +
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  190  AIPFKLMLFVVMDGWSTLVHGLVLTY  215
            ++PFKL++FV++DGWS ++  LV +Y
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

227) yscR in NC_007435


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  138 bits (507),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 147/206 (72%), Gaps = 1/206 (0%)

Query  11   LIAVL-VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP  69
            LIA+L ++S++P++ ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A++++++IMAP
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  70   IGFaaqqqlqgqalSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQA  129
            +G+  Q +LQ + LS +      Q    A  P+R FL  ++   +  FF       WP+ 
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  130  AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV  189
                ++ D L++L PAFTL+Q+ +AF+IG++L+++F+ +DL+++N+L++MGM  V P  +
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  190  AIPFKLMLFVVMDGWSTLVHGLVLTY  215
            ++PFKL++FV++DGWS ++  LV +Y
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

228) BPC006_II2174 in NC_018529


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  138 bits (507),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 147/206 (72%), Gaps = 1/206 (0%)

Query  11   LIAVL-VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP  69
            LIA+L ++S++P++ ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A++++++IMAP
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  70   IGFaaqqqlqgqalSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQA  129
            +G+  Q +LQ + LS +      Q    A  P+R FL  ++   +  FF       WP+ 
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  130  AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV  189
                ++ D L++L PAFTL+Q+ +AF+IG++L+++F+ +DL+++N+L++MGM  V P  +
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  190  AIPFKLMLFVVMDGWSTLVHGLVLTY  215
            ++PFKL++FV++DGWS ++  LV +Y
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

229) BPSS1617 in NC_006351


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  138 bits (507),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 147/206 (72%), Gaps = 1/206 (0%)

Query  11   LIAVL-VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP  69
            LIA+L ++S++P++ ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A++++++IMAP
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  70   IGFaaqqqlqgqalSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQA  129
            +G+  Q +LQ + LS +      Q    A  P+R FL  ++   +  FF       WP+ 
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  130  AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV  189
                ++ D L++L PAFTL+Q+ +AF+IG++L+++F+ +DL+++N+L++MGM  V P  +
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  190  AIPFKLMLFVVMDGWSTLVHGLVLTY  215
            ++PFKL++FV++DGWS ++  LV +Y
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

230) epaP in NC_021877


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  138 bits (507),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 147/206 (72%), Gaps = 1/206 (0%)

Query  11   LIAVL-VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP  69
            LIA+L ++S++P++ ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A++++++IMAP
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  70   IGFaaqqqlqgqalSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQA  129
            +G+  Q +LQ + LS +      Q    A  P+R FL  ++   +  FF       WP+ 
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  130  AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV  189
                ++ D L++L PAFTL+Q+ +AF+IG++L+++F+ +DL+++N+L++MGM  V P  +
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  190  AIPFKLMLFVVMDGWSTLVHGLVLTY  215
            ++PFKL++FV++DGWS ++  LV +Y
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

231) epaP in NC_021174


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  138 bits (507),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 84/206 (41%), Positives = 146/206 (71%), Gaps = 1/206 (0%)

Query  11   LIAVL-VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP  69
            LIA+L ++S++P++ ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A++++++IMAP
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  70   IGFaaqqqlqgqalSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPKA  129
            +G+  Q +LQ + LS +      Q    A  P+R FL  ++   +  FF       WP  
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  130  AAAQLRDDDLIVLAPAFTLAQMTDAFRIGFLLYIAFIIVDLVIANVLMSMGMNQVQPTNV  189
                ++ D L++L PAFTL+Q+ +AF+IG+LL+++F+ +DL+++N+L++MGM  V P  +
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  190  AIPFKLMLFVVMDGWSTLVHGLVLTY  215
            ++PFKL++FV++DGWS ++  LV +Y
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

232) H650_14845 in NC_021500


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  138 bits (506),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 78/194 (41%), Positives = 143/194 (74%), Gaps = 2/194 (1%)

Query  25   MIISTSFLKISVVLLIVRNALGIQQVPGNMVIYSISLAATLFIMGPVFNDMTQRVRQISP  84
            ++++T+FLK+SVV+ ++RNALG+QQVP N+ IY+++L  T+FIM+PV  D+  R+++   
Sbjct  24   VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEEL  83

Query  85   DKIDVAAIYAHY-PTVIAPLQNFLQRNIDADTHVRLTEAAKKLWKDQANNPITRDNPALI  143
             + D++A+  +     + P ++FLQRN D +    + +  ++ W ++  +++  D+  ++
Sbjct  84   SN-DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLIL  142

Query  144  LSAFVLSELQSGFKIGFLIYIPFLVIDLVVSTVLMALGMQMVAPMFIAIPLKLLLFVLIE  203
            ++AF LS+L+ +FKIG+L+++PF+ IDL+VS +L+A+GM MV+PM +++P+KLL+FVL++
Sbjct  143  MPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVD  202

Query  204  GWSRLLEGLFYSYI  217
            GWS +L  L  SY+
Sbjct  203  GWSLVLGQLVGSYL  216

233) fliP in NC_018645


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  137 bits (504),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 91/207 (44%), Positives = 148/207 (72%), Gaps = 6/207 (2%)

Query  48   EIIALLTVLALAPAILILMTPFTRLIVVFHFLRQAIGTQSSPPNQVIVGLALFMTFFIIK  107
            ++IALL +L++ P ++++ T+F +L VVF +LR+A+G Q  PPN  I GLAL +T+FI+ 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  108  PVAQEIYQQSLNPYLEREITY--EKAFESAQVPIRKFLLLNTRESDIALFVKGADMKKPE  165
            PV+ ++  +  N  L  +I    ++  ++A VP R FL  NT   ++++F    + K PE
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  166  T-RDDV---SLLVLIPAYVISELKTAFIIGFVLYIPFIVIDMVVASVLLAMGMMMLPPVM  221
              RD V   SLL+L+PA+ +S+L+ AF IG++L++PF+ ID++V+++LLAMGMMM++P+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  222  ISLPFKLMLFVLVDGWHLICASLLKSF  248
            +SLPFKL++FVLVDGW L+ + L+ S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

234) EAM_2659 in NC_013971


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  137 bits (504),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 88/217 (41%), Positives = 159/217 (74%), Gaps = 4/217 (1%)

Query  1    MLSNDISLIALLSFFTLLPFIIAGGTCFIKFSIVMVMVRNALGIQQVPSTLTLNGIALIM  60
            +L++   LIALL  +++LP+++  GT F+K+S+V  ++RNALG+QQVP+ +++ G+AL++
Sbjct  3    LLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVL  62

Query  61   TAFVMMPICQKISSYVETNHIDFNNSASVTQLMDQGLGGYRDYLVRYSDHELIRYFNKIQ  120
            T F+M P+   + + ++ +++  + +A   Q+ +++L  YRD+L R +D E + +FN I 
Sbjct  63   TIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  121  QQQAGESAPEVEEHQLSSLSLMTLMPAYALSEIQSAFKIAFYLYVPFvvidlvvssilla  180
            Q++  E   +    +    SL+ LMPA++LS+++ AFKI++ L++PFV IDL+VS+ILLA
Sbjct  123  QNKWPERYRDSVKPD----SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLA  178

Query  181  lGMMMMSPVTISIPIKLILFVAMNGWSLLTKGMIAQY  217
            +GMMM+SP+T+S+P+KL++FV ++GWSL+   +++ Y
Sbjct  179  MGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

235) spaP1 in NC_013961


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  137 bits (504),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 88/217 (41%), Positives = 159/217 (74%), Gaps = 4/217 (1%)

Query  1    MLSNDISLIALLSFFTLLPFIIAGGTCFIKFSIVMVMVRNALGIQQVPSTLTLNGIALIM  60
            +L++   LIALL  +++LP+++  GT F+K+S+V  ++RNALG+QQVP+ +++ G+AL++
Sbjct  3    LLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVL  62

Query  61   TAFVMMPICQKISSYVETNHIDFNNSASVTQLMDQGLGGYRDYLVRYSDHELIRYFNKIQ  120
            T F+M P+   + + ++ +++  + +A   Q+ +++L  YRD+L R +D E + +FN I 
Sbjct  63   TIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  121  QQQAGESAPEVEEHQLSSLSLMTLMPAYALSEIQSAFKIAFYLYVPFvvidlvvssilla  180
            Q++  E   +    +    SL+ LMPA++LS+++ AFKI++ L++PFV IDL+VS+ILLA
Sbjct  123  QNKWPERYRDSVKPD----SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLA  178

Query  181  lGMMMMSPVTISIPIKLILFVAMNGWSLLTKGMIAQY  217
            +GMMM+SP+T+S+P+KL++FV ++GWSL+   +++ Y
Sbjct  179  MGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

236) Dd586_1882 in NC_013592


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  137 bits (503),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 94/201 (47%), Positives = 153/201 (77%), Gaps = 2/201 (0%)

Query  18   LSLIPLAMIVCTCFLKISMVLMLTRNAIGVQQVPPNMALYGVALAATLFVMAPVFSDIKL  77
            LS++PL +++ T FLK+S+V+ L RNA+GVQQVPPN+A+YG+AL  T+F+MAPV  D++ 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   RFQDAPVDFSSLDALESSVTR-GIEPLQKFMSRNTDPDILTHLHENSLRMWPAAMTEKIT  136
            R+Q+  +  + ++AL   + + ++ P + F+ RNTD + +T +++     WP    + + 
Sbjct  77   RLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK  135

Query  137  TQNILLILPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTlslplkl  196
             +++L+++PA+ LS+L+ +FKIG+L+++PF+ IDLIVSN+LLA+GM MV+P TLSLP+KL
Sbjct  136  PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  197  llfvlVNGWTRLLDGLFYSYL  217
            L+FVLV+GW+ +L+ L  SYL
Sbjct  196  LVFVLVDGWSLVLGQLVGSYL  216

237) fliP in NC_007492


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  136 bits (500),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 87/201 (44%), Positives = 148/201 (74%), Gaps = 10/201 (4%)

Query  55   LSFIPAAVILMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFIMAPV-FD---  110
            LS +P  V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV +D   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  RVNNDALQPYLAEKLTAQQAVEKAQVPIKDFMLAQTRSSDLELFVRL--SKRTDI--ATP  166
            R++N+ L   ++    A+Q  ++A VP +DF+  +T   ++ +F  +  +K+ +    + 
Sbjct  77   RLQNEELSNDIGA--LAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  167  DAAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK  226
             + +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+V+++L+AMGMMM+SP+ +SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  227  IMLFVLVDGWALIIGTLASSF  247
            +++FVLVDGW+L++G L +S+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

238) fliP in NC_007498


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  136 bits (499),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 87/207 (43%), Positives = 153/207 (74%), Gaps = 6/207 (2%)

Query  45   QILLIMTVLSVAPAILLMTTAFIRLAVVLSFLRQAMGTQQMPPNQVIIGLSLFLTFFVMS  104
            Q++ ++ +LSV P +++M TAF++L+VV+S+LR+A+G QQ+PPN  I GL+L LT+F+M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  105  PVFNQINDQAVQPYLTQKIDQ--KQALTLAVEPMRQFMFSQTTESELSLLMEISGHPDPA  162
            PV  +++ +  +  L++ I+    Q    A+ P R+F+  +T   +++++ +I  +  P 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  163  G-KEDVPT---LTLIPAFMLSELKRAFQIGFMIYIPFLVIDMIVASVLMSMGMMMLPPII  218
              ++ V     L L+PAF LS+L+ AF+IG+++++PF+ ID+IV+++L++MGMMM++P+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  219  ISLPFKLLLFVLVDGWTLIVGSLVQSF  245
            +SLPFKLL+FVLVDGW+L++G LV S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

239) Deba_2315 in NC_014365


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  136 bits (498),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 85/190 (45%), Positives = 134/190 (71%), Gaps = 6/190 (3%)

Query  74   MTTSFVRIAVSFSLLRNALGAPQVPPTQIIVGLSLFLTFFIMAPVFDQVHDKALKPYLDG  133
            M T+F++++V FSLLRNALG  QVPP   I GL+L LT+FIMAPV  +V+ +  +  L  
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85

Query  134  AISQ--SAFFEEAAKPMREFMLKQTRKKDLGLFMKIAGEDRP-RNEQDV---TMSALVPA  187
             I+     + ++A  P R+F+ ++T   ++ +F  I  + +P R  + V   ++  L+PA
Sbjct  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145

Query  188  FVISELRTAFEIGFLLYVPFLVIDMVVASVLLSMGMMMLPPVMISLPFKLMLFVLVDGWY  247
            F +S+L  AF IG+LL++PF+ ID++V+++LL+MGMMM++P+ +SLPFKL++FVLVDGW 
Sbjct  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205

Query  248  LLVGSLVRSF  257
            L++G LV S+
Sbjct  206  LVLGQLVGSY  215

240) fliP in NC_015259


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  136 bits (500),  Expect = 9e-34, Method: Compositional matrix adjust.
 Identities = 89/214 (42%), Positives = 151/214 (71%), Gaps = 6/214 (2%)

Query  35   SLTERAVQLVALLTVLSLAPSILVMVTSFTRIVVVLSLLRSAIGLQTAPPNMVMVSLALF  94
             L + + QL+ALL +LS+ P ++VM T+F ++ VV+SLLR+A+G+Q  PPN+ + +LAL 
Sbjct  2    ELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALV  61

Query  95   LTAFIMAP-TLQVAYEEGVQPLVEGTIEFDQAFERAS-TPFHAFMLSQVREKDLALFQEL  152
            LT FIMAP  L+V      + L ++   + + +++ +  P++ F+  +    ++++F+++
Sbjct  62   LTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDI  121

Query  153  SGQEAPET-QEDL---SFQTLIPAFMISELRRAFEIGFLLYLPFLIIDLVVASVLMSMGM  208
              +  PE  ++ +   S+  L+PAF +S+L  AF IG+LL+LPF+ IDL+V+++L++MGM
Sbjct  122  VQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGM  181

Query  209  MMLPPVVISLPFKLIFFVLVDGWNLVAGSLVRSF  242
            MM++P+ +SLPFKL+ FVLVDGW+LV G LV S+
Sbjct  182  MMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

241) fliP in NC_020912


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 86/199 (44%), Positives = 148/199 (75%), Gaps = 6/199 (3%)

Query  60   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINS  119
            LS +P +V++ T+F ++ +VFS+LR+ALG+Q  P+N  + GLAL LT+F+MAPV   +++
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  120  QALQPYLNEQIPA--QEALQKAEVPLKAFMLAQTRTSDLELFVRL--SKRTDI--GSPEA  173
            +  +  L+++I A  ++  Q+A VP + F+  +T   ++ +F  +  +K+ +   +S  +
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  174  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  233
             +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+VS++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  234  LFVLVDGWALIIGTLAGSF  252
            +FVLVDGW+L++G L GS+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

242) fliP in NC_018080


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 86/199 (44%), Positives = 148/199 (75%), Gaps = 6/199 (3%)

Query  60   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINS  119
            LS +P +V++ T+F ++ +VFS+LR+ALG+Q  P+N  + GLAL LT+F+MAPV   +++
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  120  QALQPYLNEQIPA--QEALQKAEVPLKAFMLAQTRTSDLELFVRL--SKRTDI--GSPEA  173
            +  +  L+++I A  ++  Q+A VP + F+  +T   ++ +F  +  +K+ +   +S  +
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  174  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  233
             +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+VS++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  234  LFVLVDGWALIIGTLAGSF  252
            +FVLVDGW+L++G L GS+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

243) fliP in NC_011770


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 86/199 (44%), Positives = 148/199 (75%), Gaps = 6/199 (3%)

Query  60   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINS  119
            LS +P +V++ T+F ++ +VFS+LR+ALG+Q  P+N  + GLAL LT+F+MAPV   +++
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  120  QALQPYLNEQIPA--QEALQKAEVPLKAFMLAQTRTSDLELFVRL--SKRTDI--GSPEA  173
            +  +  L+++I A  ++  Q+A VP + F+  +T   ++ +F  +  +K+ +   +S  +
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  174  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  233
             +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+VS++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  234  LFVLVDGWALIIGTLAGSF  252
            +FVLVDGW+L++G L GS+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

244) fliP in NC_017548


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 86/199 (44%), Positives = 148/199 (75%), Gaps = 6/199 (3%)

Query  60   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINS  119
            LS +P +V++ T+F ++ +VFS+LR+ALG+Q  P+N  + GLAL LT+F+MAPV   +++
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  120  QALQPYLNEQIPA--QEALQKAEVPLKAFMLAQTRTSDLELFVRL--SKRTDI--GSPEA  173
            +  +  L+++I A  ++  Q+A VP + F+  +T   ++ +F  +  +K+ +   +S  +
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  174  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  233
             +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+VS++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  234  LFVLVDGWALIIGTLAGSF  252
            +FVLVDGW+L++G L GS+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

245) fliP in NC_017549


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 86/199 (44%), Positives = 148/199 (75%), Gaps = 6/199 (3%)

Query  60   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINS  119
            LS +P +V++ T+F ++ +VFS+LR+ALG+Q  P+N  + GLAL LT+F+MAPV   +++
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  120  QALQPYLNEQIPA--QEALQKAEVPLKAFMLAQTRTSDLELFVRL--SKRTDI--GSPEA  173
            +  +  L+++I A  ++  Q+A VP + F+  +T   ++ +F  +  +K+ +   +S  +
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  174  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  233
             +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+VS++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  234  LFVLVDGWALIIGTLAGSF  252
            +FVLVDGW+L++G L GS+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

246) fliP in NC_002516


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 86/199 (44%), Positives = 148/199 (75%), Gaps = 6/199 (3%)

Query  60   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINS  119
            LS +P +V++ T+F ++ +VFS+LR+ALG+Q  P+N  + GLAL LT+F+MAPV   +++
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  120  QALQPYLNEQIPA--QEALQKAEVPLKAFMLAQTRTSDLELFVRL--SKRTDI--GSPEA  173
            +  +  L+++I A  ++  Q+A VP + F+  +T   ++ +F  +  +K+ +   +S  +
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  174  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  233
             +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+VS++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  234  LFVLVDGWALIIGTLAGSF  252
            +FVLVDGW+L++G L GS+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

247) M062_07750 in NC_021577


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 86/199 (44%), Positives = 148/199 (75%), Gaps = 6/199 (3%)

Query  60   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINS  119
            LS +P +V++ T+F ++ +VFS+LR+ALG+Q  P+N  + GLAL LT+F+MAPV   +++
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  120  QALQPYLNEQIPA--QEALQKAEVPLKAFMLAQTRTSDLELFVRL--SKRTDI--GSPEA  173
            +  +  L+++I A  ++  Q+A VP + F+  +T   ++ +F  +  +K+ +   +S  +
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  174  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  233
             +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+VS++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  234  LFVLVDGWALIIGTLAGSF  252
            +FVLVDGW+L++G L GS+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

248) fliP in NC_008463


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 86/199 (44%), Positives = 148/199 (75%), Gaps = 6/199 (3%)

Query  60   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINS  119
            LS +P +V++ T+F ++ +VFS+LR+ALG+Q  P+N  + GLAL LT+F+MAPV   +++
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  120  QALQPYLNEQIPA--QEALQKAEVPLKAFMLAQTRTSDLELFVRL--SKRTDI--GSPEA  173
            +  +  L+++I A  ++  Q+A VP + F+  +T   ++ +F  +  +K+ +   +S  +
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  174  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  233
             +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+VS++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  234  LFVLVDGWALIIGTLAGSF  252
            +FVLVDGW+L++G L GS+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

249) fliP in NC_007005


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 86/201 (43%), Positives = 149/201 (75%), Gaps = 10/201 (4%)

Query  55   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQAPSNQILTGMALFLTMFIMAPV-FD---  110
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV +D   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  RVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRL--SKRTDI--PTP  166
            R++++ L   ++    A++   +A VP +DF+  +T   ++ +F  +  +K+ +    + 
Sbjct  77   RLQNEELSNDIGA--LAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  167  DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK  226
             + +L IL+PAF +S+L+ AF+IG+++F+PF+ IDL+V+++L+AMGMMM+SP+ +SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  227  IMLFVLVDGWALIVGTLAGSF  247
            +++FVLVDGW+L++G L GS+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

250) fliP in NC_005773


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 85/201 (43%), Positives = 147/201 (74%), Gaps = 10/201 (4%)

Query  55   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPV----FD  110
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV      
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  RVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRL--SKRTDI--PTP  166
            R++++ L   ++    A++   +A VP +DF+  +T   ++ +F  +  +K+ +    + 
Sbjct  77   RLQNEELSNDIGA--LAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  167  DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK  226
             + +L IL+PAF +S+L+ AF+IG+++F+PF+ IDL+V+++L+AMGMMM+SP+ +SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  227  IMLFVLVDGWALIVGTLAGSF  247
            +++FVLVDGW+L++G L GS+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

251) fliP in NC_004578


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 85/201 (43%), Positives = 147/201 (74%), Gaps = 10/201 (4%)

Query  55   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPV----FD  110
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV      
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  RVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRL--SKRTDI--PTP  166
            R++++ L   ++    A++   +A VP +DF+  +T   ++ +F  +  +K+ +    + 
Sbjct  77   RLQNEELSNDIGA--LAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  167  DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK  226
             + +L IL+PAF +S+L+ AF+IG+++F+PF+ IDL+V+++L+AMGMMM+SP+ +SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  227  IMLFVLVDGWALIVGTLAGSF  247
            +++FVLVDGW+L++G L GS+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

252) BP1026B_II1728 in NC_017832


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (495),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 147/206 (72%), Gaps = 1/206 (0%)

Query  11   LIAVL-VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP  69
            LIA+L ++S++P++ ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A++++++IMAP
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  70   IGFaaqqqlqgqalSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPqa  129
            +G+  Q +LQ + LS +      Q    A  P+R FL  ++   +  FF       WP+ 
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  130  aaaqLRDDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV  189
                ++ D L++L PAFTL+Q+ +AF+IG++L+++F+ +DL+++N+L++MGM  V P  +
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  190  AIPFKLMLFVVMDGWSTLVHGLVLTY  215
            ++PFKL++FV++DGWS ++  LV +Y
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

253) yscR in NC_009075


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (495),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 147/206 (72%), Gaps = 1/206 (0%)

Query  11   LIAVL-VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP  69
            LIA+L ++S++P++ ++ T++ K+ VV++LLRNALGVQQVPPN+ + G+A++++++IMAP
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  70   IGFaaqqqlqgqalSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPqa  129
            +G+  Q +LQ + LS +      Q    A  P+R FL  ++   +  FF       WP+ 
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  130  aaaqLRDDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV  189
                ++ D L++L PAFTL+Q+ +AF+IG++L+++F+ +DL+++N+L++MGM  V P  +
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  190  AIPFKLMLFVVMDGWSTLVHGLVLTY  215
            ++PFKL++FV++DGWS ++  LV +Y
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

254) PSEBR_a1491 in NC_015379


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (494),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 88/199 (45%), Positives = 144/199 (73%), Gaps = 6/199 (3%)

Query  54   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQ  113
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV   V+ 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  114  DALQPYLAEKITA--QDAVAKAEVPIKDFMLAQTRSSDLELFMRL--SKRTDI--PSADQ  167
               +  L++ I A  ++   +A VP +DF+  +T   ++ +F  +  +K+ +    S   
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  168  APLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSPLIISLPFKIM  227
             +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+V++IL+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  228  LFVLVDGWALIIGTLAGSF  246
            +FVLVDGW+L++G L GS+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

255) fliP in NC_016830


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (494),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 88/199 (45%), Positives = 144/199 (73%), Gaps = 6/199 (3%)

Query  54   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQ  113
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV   V+ 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  114  DALQPYLAEKITA--QDAVAKAEVPIKDFMLAQTRSSDLELFMRL--SKRTDI--PSADQ  167
               +  L++ I A  ++   +A VP +DF+  +T   ++ +F  +  +K+ +    S   
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  168  APLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSPLIISLPFKIM  227
             +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+V++IL+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  228  LFVLVDGWALIIGTLAGSF  246
            +FVLVDGW+L++G L GS+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

256) spaP in NC_005085


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (494),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 94/217 (44%), Positives = 163/217 (76%), Gaps = 5/217 (2%)

Query  1    MSNDISLIALLAFSTLLPFLIASGTCFVKFSIVFVMVRNALGLQQVPSNMTLNGIALMLS  60
            +++   LIALL   ++LP+L+  GT F+K+S+VF ++RNALG+QQVP+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMLPVAQQAYGYYQEERVSFTSVEAVNNFVENGLDGYRGYLQKYSDPELTRFFEK-AQ  119
            +F+M PV+ +  +  Q+E +S       +++ +N+L  YR++LQ+ +D E   FF+   Q
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  120  SQRSERDGGEAAAPDDKPSIFALLPAYALSEIKSAFKIGFYLYLPFvvvdlvissvllal  179
            ++++ER   ++  PD   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL++S++LLA+
Sbjct  124  NKWPERY-RDSVKPD---SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAM  179

Query  180  GMMMMSPVTISVPIKLVLFVALDGWTLLSKGLVLQYL  216
            GMMM+SP+T+S+P+KL++FV +DGW+L+   LV  YL
Sbjct  180  GMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

257) fliP in NC_020829


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (495),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 86/199 (44%), Positives = 145/199 (73%), Gaps = 6/199 (3%)

Query  68   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLIGLALFLTLFVMAPVFDKINA  127
            LS +P +V++ T+F ++ +VFS+LR+ALG+Q  P+N  + GLAL LT+F+MAPV   ++A
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  128  NALQPYLNEQIPA--QEAISRAEVPLKAFMLAQTRQSDLELFVRL--SKRTDI--QSADA  181
               +  L+++I A  ++    A VP + F+  +T   ++ +F  +  +K+ +   +S  +
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  182  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  241
             +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+VS++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  242  LFVLVDGWALIIGTLAGSF  260
            +FVLVDGW+L++G L GS+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

258) fliP in NC_021237


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (494),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 86/201 (43%), Positives = 145/201 (73%), Gaps = 10/201 (4%)

Query  54   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPV----FD  109
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV      
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  110  RVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRSSDLELFMRL--SKRTDI--ASP  165
            R++++ L   ++    A++   +A VP +DF+  +T   ++ +F  +  +K+ +    S 
Sbjct  77   RLQNEELSNDIGA--LAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  166  DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK  225
               +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+V+++L+AMGMMM+SP+ +SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  226  IMLFVLVDGWALIIGTLAGSF  246
            +++FVLVDGW+L++G L GS+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

259) fliP in NC_004129


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (494),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 86/201 (43%), Positives = 145/201 (73%), Gaps = 10/201 (4%)

Query  54   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPV----FD  109
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV      
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  110  RVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRSSDLELFMRL--SKRTDI--ASP  165
            R++++ L   ++    A++   +A VP +DF+  +T   ++ +F  +  +K+ +    S 
Sbjct  77   RLQNEELSNDIGA--LAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  166  DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK  225
               +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+V+++L+AMGMMM+SP+ +SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  226  IMLFVLVDGWALIIGTLAGSF  246
            +++FVLVDGW+L++G L GS+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

260) Desgi_2217 in NC_021184


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  135 bits (494),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 85/210 (41%), Positives = 152/210 (73%), Gaps = 6/210 (2%)

Query  49   NSIKILIMLTLLSLVPAFLLMMTSFTRIIVVLSLLRSALGTQQTPPNQVIIGLALFLTVF  108
            +S +++ +L +LS++P +++M T+F ++ VV+SLLR+ALG QQ PPN  I GLAL LT+F
Sbjct  6    SSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIF  65

Query  109  IMTPVAGQINEEAIQPYLDNQISQ--QQAWDKAYSPLRSFMLKQTREKDLALFIKLSGTE  166
            IM+PV+ +++    +  L N+I+   +Q  ++A  P R F+ ++T   ++++F  +    
Sbjct  66   IMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNK  125

Query  167  KPEN-RQDVSA---VVLIPAYVISELKTAFQIGFMIYIPFLVIDMVVASTLMSMGMFMLP  222
             PE  R+ V +   ++L+PA+ +S+L+ AF+IG+++++PF+ ID++V++ L++MGM M++
Sbjct  126  WPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVS  185

Query  223  PVMISLPFKILLFVMVDGWYLVVKTLVESF  252
            P+ +SLPFK+L+FV+VDGW LV+  LV S+
Sbjct  186  PMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

261) fliP in NC_012559


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  134 bits (493),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 86/198 (44%), Positives = 144/198 (73%), Gaps = 10/198 (5%)

Query  59   IPALLLMMTAFTRIVIVLSLLRQAIGLMQSPPNQVIVGLSLFLTLFVMAPVFDQAYREAW  118
            +P L++M TAF ++ +V+SLLR+A+G+ Q PPN  I GL+L LT+F+MAPV  +   +A+
Sbjct  20   LPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDV--QAR  77

Query  119  LPYSDSQMNF----MQAAEKGVQPFKGFMLKQTREKDLAFFVEIAREA-PPATPADV---  170
            L   +   ++     Q  ++++ P+++F+ ++T   +++FF +I ++  P      V   
Sbjct  78   LQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPD  137

Query  171  SLKTLIPAFVVSELKTAFQIGFMVFIPFLIIDLVVASVLMAMGMMMVSPVIISLPFKLML  230
            SL  L+PAF +S+L+ AF+IG+++F+PF+ IDL+V+++L+AMGMMMVSP+ +SLPFKL++
Sbjct  138  SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLV  197

Query  231  FVLVDGWTLLIGSLVQSF  248
            FVLVDGW+L++G LV S+
Sbjct  198  FVLVDGWSLVLGQLVGSY  215

262) fliP in NC_016002


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  134 bits (493),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 90/205 (44%), Positives = 150/205 (74%), Gaps = 8/205 (3%)

Query  47   LLFMTALSFIPALLLMMTSFTRIIIVLSLLRQAMGTMQAPPNQVLVGLALFLTLFVMGPT  106
            LLFM  LS +P L++M T+F ++ +V+SLLR+A+G  Q PPN  + GLAL LT+F+M+P 
Sbjct  13   LLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  107  FDQVYSK-AWVPFSEDKIGFAQMLEEGS-KPMREFMLKQTREKDLAFFIEVSQSPAPP--  162
              +V ++     +S+D  ++A+ +++ +  P R+F+ ++T   +++FF ++ Q+  P   
Sbjct  71   GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERY  130

Query  163  --TPAEVSMKTLIPAFVISELKTAFQIGFMVFIPFLIIDLVVASILMAMGMMMVSPVIIS  220
              +    S+  L+PAF +S+L+ AF+IG+++F+PF+ IDL+V++IL+AMGMMMVSP+ +S
Sbjct  131  RDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLS  190

Query  221  LPFKLMLFVLVDGWTLLMGSLVRSF  245
            LPFKL++FVLVDGW+L++G LV S+
Sbjct  191  LPFKLLVFVLVDGWSLVLGQLVGSY  215

263) fliP in NC_017911


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  134 bits (492),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 84/199 (43%), Positives = 145/199 (73%), Gaps = 6/199 (3%)

Query  52   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFIMAPVFDKVNQ  111
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV   V+ 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  112  QALQPYLAEKLTA--QDAIDKAQGPIKDFMLSQTRSSDLELFMRL--SKRTDI--ATPDQ  165
            +  +  L++ + A  ++  ++A  P +DF+  +T   ++ +F  +  +K+ +    +   
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  APLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIM  225
             +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+V+++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  226  LFVLVDGWALIIGTLAGSF  244
            +FVLVDGW+L++G L GS+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

264) fliP in NC_009656


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  134 bits (491),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 85/199 (43%), Positives = 146/199 (74%), Gaps = 6/199 (3%)

Query  60   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDRINS  119
            LS +P +V++ T+F ++ +VFS+LR+ALG+Q  P+N  + GLAL LT+F+MAPV   +++
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  120  QALQPYLNEQIPA--QEALQRAEVPLKAFMLAQTRTSDLELFVRL--SKRTDI--SGPEA  173
            +  +  L+++I A  ++  Q A VP + F+  +T   ++ +F  +  +K+ +    +  +
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  174  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  233
             +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+VS++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  234  LFVLVDGWALIIGTLAGSF  252
            +FVLVDGW+L++G L GS+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

265) Atc_1493 in NC_015850


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  134 bits (491),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 89/216 (42%), Positives = 153/216 (71%), Gaps = 10/216 (4%)

Query  13   GTEYSLSIQTLLFMTVLVFLPALLLMMTAFTRIIIVLSLLKQALGSTQMPPSQVMVGLAL  72
             + Y L   +LLFM  L  LP L++M TAF ++ +V+SLL++ALG  Q+PP+  + GLAL
Sbjct  5    NSSYQLI--ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  73   FLTFFVMAPVFQQINTE-ALQPLNDNKIDLVQAMAKAE-GPLRNFMLSQTRPDDLALFVK  130
             LT+F+MAPV  ++++    + L+++   L + + +    P R+F+  +T  +++++F  
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  131  LSGHKALEKPSDT----PLSLLVPAFITSELKTGFQIGFLIFIPFVIIDLVVAAVLMSLG  186
            +  +K  E+  D+    +L +L+PAF  S+L+ +F+IG+L+F+PFV IDL+V+ +L+++G
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  187  MMMLSPVTVSFPLKLMLFVLVDGWDLVIGSLVQSFV  222
            MMM+SP+T+S+P+KL++FVLVDGW LV+G LV S++
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

266) Marme_3223 in NC_015276


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  134 bits (491),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 150/206 (73%), Gaps = 8/206 (3%)

Query  49   ILFIMTALTLLPSALIMMTSFTRIIIVLSILRQALGLQQAPSNQIILGMALFLTLFIMGP  108
            +LF+++ L LL   ++M T+F ++ +V+S+LR+ALG+QQ P+N  I G+AL LT+FIM+P
Sbjct  13   LLFMLSVLPLL---VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  109  TLDQINESALQPYLSDNMTSL--QAVKAASIPIREFMLGQTREDDIALFVKLAGK---EG  163
               +++    +  LS+++ +L  Q  + A +P R+F+  +T  +++++F  +  +   E 
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  164  QIPSLEDLPFTILMPAFVTSELKTAFQIGFMLFIPFLIVDMVVASVLMAMGMMMLSPIII  223
               S+   ++ ILMPAF  S+L+ AF+IG++LF+PF+ +D++V+++L+AMGMMM+SP+ +
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  224  SLPFKIMLFVMVDGWSMIMGTLAASF  249
            SLPFK+++FV+VDGWS+++G L +S+
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

267) fliP in NC_015975


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  134 bits (490),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 82/203 (41%), Positives = 146/203 (72%), Gaps = 7/203 (3%)

Query  69   LLSIIPLILIMTTSFTRIIVVLSFVRSSLGTQQNPPNQVLIGLALFLTLFTMRPVYNDIY  128
            +LS++PL+++M T+F ++ VV+S++R++LG QQ PPN  + GLAL LT+F M PV  D+ 
Sbjct  16   MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDV-  74

Query  129  HNAIQP---YNENKITQQEVFDRSENRMKEFMYKQANKKDVKLFKDLDQKNERKKIKYR-  184
            +  +Q     N+     +++ + +    ++F+ ++++  +V +F+D+ Q+  +   +YR 
Sbjct  75   QARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN--KWPERYRD  132

Query  185  TYKDIPFTVMAPAFILSELKTAFSIGFLLFIPFMIIDLVVASVLMSMGMIMLSPVMISLP  244
            + K  ++ ++ PAF LS+L+ AF IG+LLF+PF+ IDL+V+++L++MGM+M+SP+ +SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  245  FKILLFVLVDGWYLLVESLVQSF  267
            FK+L+FVLVDGW L++  LV S+
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSY  215

268) fliP in NC_007503


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  133 bits (487),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 82/188 (44%), Positives = 137/188 (73%), Gaps = 6/188 (3%)

Query  72   TSFTRIVVVLSLLRNAMGTQQAPPNQVLIGLALFLTIFIMSPVINKINQDAIQPYLNNQI  131
            T+F ++ VV+SLLRNA+G QQ PPN  + GLAL LTIFIM+PV   ++    +  L+N+I
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  132  TQ--EQAIRAAEAPLKDFMLKQTREKDLALFIELAKLPRPQT-KDDV---PFTVVVPAFI  185
                +Q  + A  P +DF+ ++T   ++++F ++ +  +P+  +D V   ++ +++PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  186  ISELKTAFQMGFMLFLPFLIIDMVVASILMSMGMFMIPPMLVALPFKLLLFVLADGWYLV  245
            +S+L+ AF++G++LFLPF+ ID++V++IL++MGM M++PM ++LPFKLL+FVL DGW LV
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  246  VKSLVSSF  253
            +  LV+S+
Sbjct  208  LGQLVGSY  215

269) fliP in NC_008027


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  133 bits (487),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 84/199 (43%), Positives = 145/199 (73%), Gaps = 6/199 (3%)

Query  56   LSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQVLTGMALFLTMFIMAPVFERVNK  115
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV   V+ 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  116  DAIQPYLAEQMTA--QQAIDKAQGPLKDFMLAQTRQSDLDLFMRL--SKRTDI--AGPDQ  169
               +  L++++ A  +Q  ++A  P +DF+  +T   ++ +F  +  +K+ +    +   
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  170  VPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIM  229
             +L IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  230  LFVLVDGWALIMGTLAGSF  248
            +FVLVDGW+L++G L GS+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

270) fliP in NC_006370


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  133 bits (489),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 86/203 (43%), Positives = 146/203 (72%), Gaps = 14/203 (6%)

Query  49   LAFLPAMLLMTTSFTRIIIVLGILRQAMGLQQSPPNRVLVGIALTLSLFIMRPVIYDIH-  107
            L+ LP +++M T+F ++ +V+++LR+A+G+QQ PPN  + G+AL L++FIM PV  D++ 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  108  --DNAVVPYQKGEMTMFEAAKVAEQPLRQFMLQQTRETDLEQILRIAD-------EPTPD  158
              +N  ++ + G ++  +  + A  P R+F+    R+TD+EQ+  + D       E   D
Sbjct  77   RLQNEELSNDIGALAH-QIDQNALVPYRDFL---QRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  159  NVDDLDFLLVMPAFILSELKTAFQIGFMLFIPFLIIDMVVASVLMAMGMMMLSPLIISLP  218
            +V    +L++MPAF LS+L+ AF+IG++LF+PF+ ID++V+++L+AMGMMM+SP+ +SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  219  FKLMVFVMVDGWSMTVGTLSASF  241
            FKL+VFV+VDGWS+ +G L +S+
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSY  215

271) mlr8766 in NC_002678


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  133 bits (488),  Expect = 8e-33, Method: Compositional matrix adjust.
 Identities = 83/177 (47%), Positives = 119/177 (68%), Gaps = 0/177 (0%)

Query  40   LVRNALGTQTIPPNIALYAVALILTMFLSAPVVEQTYDRMTDPKLHYQTFDDWVSAAKSG  99
            L+RNALG Q +PPNIA+Y++AL+LT+F+ APV  +   R+ +  L  +         +++
Sbjct  39   LLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNA  98

Query  100  SEPLRDHLKKFTNEEQRQFFLSSTEKVWPAEMRAKATVDDLSILVPSFLISELKRAFEIG  159
              P RD L++ T+ EQ  FF    ++ WP   R     D L IL+P+F +S+L+ AF IG
Sbjct  99   LVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIG  158

Query  160  FLLYLPFIVIDLIVTTILMAMGMSMVSPTLISVPFKLFVFVAIDGWSKLMHGLVLSY  216
            +LL+LPF+ IDLIV+ IL+AMGM MVSP  +S+PFKL+VFV +DGWS ++  LV SY
Sbjct  159  LLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

272) fliP in NC_009454


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  133 bits (489),  Expect = 8e-33, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 137/190 (73%), Gaps = 6/190 (3%)

Query  73   MMTSFTRIIIVLSLLRTALGVHQAPANQIVIGLALFLTVFIMAPVYREINDNSIQPYLQN  132
            M T+F ++ +V+SLLR ALGV+Q P+N  + GLAL LT+FIMAPV  +++    +  L N
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85

Query  133  QISQ--EEAQERGVKPLRDFMLRQTREKDLGLFISLAKMEKPEK-PEDV---PLHVVIPS  186
            +I+   ++ ++ ++ P RDF+ R+T   ++ +F  + +   PE+  + V   +L +++P+
Sbjct  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145

Query  187  FIISELKTAFEIGFLLFVPFLVIDMVVASILMSMGMFMLPPVMISLPFKILLFVMVDGWY  246
            F +S+L+ AF IG+LLF+PF+ ID++V++IL++MGM M++P+ +SLPFK+L+FV+VDGW 
Sbjct  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205

Query  247  LVVKSLVESF  256
            LV+  LV S+
Sbjct  206  LVLGQLVGSY  215

273) fliP in NC_020209


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  133 bits (488),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 84/199 (43%), Positives = 143/199 (72%), Gaps = 6/199 (3%)

Query  52   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDKVNQ  111
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV   V+ 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  112  QALQPYLAETITP--QVAIDRAQGPIKDFMLSQTRSSDLELFVRL--SKRTDI--ATPDQ  165
            +  +  L++ I +  +   + A  P +DF+  +T   ++ +F  +  +K+ +    +   
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  APLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIM  225
             +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+V+++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  226  LFVLVDGWALIIGTLAGSF  244
            +FVLVDGW+L++G L GS+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

274) fliP in NC_021505


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  133 bits (488),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 84/199 (43%), Positives = 146/199 (74%), Gaps = 6/199 (3%)

Query  60   LSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNS  119
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV   V++
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  120  DALQPYLKEQMTA--QQAIDKAQVPLKDFMLAQTRQSDLDLFMRL--SKRTDI--AGPDQ  173
               +  L +++ A  +Q  ++A VP +DF+  +T   ++ +F  +  +K+ +    +   
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  174  VPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIM  233
             +L IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  234  LFVLVDGWALIMGTLASSF  252
            +FVLVDGW+L++G L +S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

275) fliP in NC_010338


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  133 bits (489),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 89/213 (42%), Positives = 146/213 (69%), Gaps = 18/213 (8%)

Query  59   QMVGLLTVLSLAPSIVIMTTSFVRIVVVLGLLRTAIGVQQSPPNPVIISLALFLTAIVMG  118
            Q+++LL +LS+ P +V+M T+F+++ VV++LLR A+GVQQ PPN  I +LAL LT ++M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  119  PT--------FEKSYDDGIKPLLDKQIEMPEAFDAAAAPVKVFMLRQVDQDDLALF---I  167
            P          +    ++I +L   QI+     + A  P + F+ R+ D +++++F   +
Sbjct  69   PVGLDVQARLQNEELSNDIGAL-AHQID-----QNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  168  RLSKIEKPKTAVD-TPLKVVTPAFMISELKRAFEIGFLLFIPFLVIDLVVASVLMSMGMM  226
            +    E+ + +V   +L ++ PAF +S+L+ AF IG+LLF+PF+ IDL+V+++L++MGMM
Sbjct  123  QNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMM  182

Query  227  MLPPATVSLPFKLIFFVLVDGWRLVAGSLVESF  259
            M++P T+SLPFKL+ FVLVDGW LV G LV S+
Sbjct  183  MVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

276) fliP in NC_012660


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  133 bits (487),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 83/199 (42%), Positives = 145/199 (73%), Gaps = 6/199 (3%)

Query  52   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFIMAPVFDKVNQ  111
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV   V+ 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  112  QALQPYLAEKMTA--QDAIDKAQGPIKDFMLSQTRSSDLELFMRL--SKRTDI--ATPDQ  165
            +  +  L++ + A  ++  ++A  P +DF+  +T   ++ +F  +  +K+ +    +   
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  APLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIM  225
             +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+V+++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  226  LFVLVDGWALIIGTLASSF  244
            +FVLVDGW+L++G L +S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

277) fliP in NC_019670


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  133 bits (488),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 84/201 (42%), Positives = 147/201 (74%), Gaps = 10/201 (4%)

Query  55   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFIMAPV-FD---  110
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV +D   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  RVNQDALQPYLAEKLTAQDAVAKAQVPIKNFMLAQTRTSDLELFMRL--SKRTDI--ATP  166
            R++++ L   ++    A++   +A VP ++F+  +T   ++ +F  +  +K+ +    + 
Sbjct  77   RLQNEELSNDIGA--LAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  167  DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK  226
               +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+V+++L+AMGMMM+SP+ +SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  227  IMLFVLVDGWALIIGTLASSF  247
            +++FVLVDGW+L++G L +S+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

278) Hore_16720 in NC_011899


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  132 bits (486),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 142/191 (75%), Gaps = 6/191 (3%)

Query  69   VMVTSFTRVIVVLGLIRQALATRRMPPNQVLIGLALFLTVFIMAPVWQDINEQALQPYLN  128
            VM T+F ++ VV++L+R+AL+ +++PPN  + GLAL LT+FIMAPV  D++ +  +  L+
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  129  NEITT--QQAYDRGIKPIRDFMFKQTREKDLALFVNMTGIERPEN-RADI---PTYVLIP  182
            N+I +  +Q  + ++ P RDF+ ++T   ++++F ++    +PE  R  +   +  +L+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  183  AFVISELKTAFQIGFLIYLPFLMIDMVVASILMSMGMLMLPPIIISLPFKLLLFILVDGW  242
            AF +S+L+ AF+IG+L++LPF+ ID++V++IL++MGM+M++P+ +SLPFKLL+F+LVDGW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  243  YLVIESLVKTF  253
             LV+  LV ++
Sbjct  205  SLVLGQLVGSY  215

279) MXAN_5647 in NC_008095


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  132 bits (486),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 87/214 (41%), Positives = 148/214 (70%), Gaps = 4/214 (1%)

Query  5    GSPLSMMGMLAVMSLLPFAVLMLTSFSKIAVVLSLARSAMGTQQAPPTIVLTGLAAVLTG  64
             S+  ++++L ++S+LP+ V+M T+F K++VV+SL R+A+G QQ PP I + GLA VLT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  65   HIMAPV-MERMYDAGQVAYAEVASGSGAEMLSAASRVSEPLRAFLIKHGSAEERARFVDL  123
             IMAPV ++     +++   E++++ GA           P R FL ++   E+ + F D+
Sbjct  65   FIMAPVGLD---VQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDI  121

Query  124  ARELRPVEEMDAVRETDLFIVIPAFVITELKEAFQIGFLVFLPFLVLDMVIANVLLALGM  183
             ++ +P    D+V+   L+I++PAF +++L+EAF+IG+L+FLPF+ +D++++N+LLA+GM
Sbjct  122  VQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGM  181

Query  184  QTLSPSQVSLPFKILLFVAVDGWSLLARGLILGY  217
              +SP  +SLPFK+L+FV VDGWSL+   L+ +Y
Sbjct  182  MMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

280) rhcR in NC_000914


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  132 bits (483),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 79/177 (45%), Positives = 121/177 (69%), Gaps = 0/177 (0%)

Query  40   LVRNALGTQTIPPNIVLYAAALILTMFVSAPVAEQTYDRITDPRLRYQSLDDWAEAAKAG  99
            L+RNALG Q +PPNI +Y+ AL+LT+F+ APV+ +   R+ +  L  +      +  + +
Sbjct  39   LLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNA  98

Query  100  SQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRAGVTADDFAILVPSFLISELKRAFEIG  159
              P  + L++ T+ EQ  FF    ++ WPE  R +V +D + IL+P+F +S+L+ AF IG
Sbjct  99   LVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIG  158

Query  160  FLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDGWSRLMHGLVLSY  216
            +LL+LPF+ IDLIV+ IL+AMGM MVSP  +++PFKL++FV +DGWS ++  LV SY
Sbjct  159  LLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

281) MDS_1862 in NC_015410


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  132 bits (485),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 86/201 (43%), Positives = 144/201 (72%), Gaps = 10/201 (4%)

Query  66   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTMFIMAPV----FD  121
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + GLAL LT+FIMAPV      
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  122  RINTDALQPYLNEEIIAQEALTRAEGPIRDFMLAQTRESDLALFVRL--SKRTDL--AGV  177
            R++ + L    +   +A++    A  P RDF+  +T   ++++F  +  +K+ +    +V
Sbjct  77   RLQNEELSN--DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  178  EDVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSPLIISLPFK  237
               +L IL+PAF  S+L+ AF+IG+++F+PF+ ID++V++IL+AMGMMM+SP+ +SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  238  IMLFVLVDGWALIMGTLAASF  258
            +++FVLVDGW+L++G L +S+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

282) fliP in NC_009439


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  132 bits (483),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 85/201 (43%), Positives = 144/201 (72%), Gaps = 10/201 (4%)

Query  66   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTLFIMAPI----FD  121
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + GLAL LT+FIMAP+      
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  122  RINTDALQPYLNEEIVAQEALTRAEGPIRDFMLAQTRESDLALFVRL--SKRTDL--AGV  177
            R++ + L    +   +A++    A  P RDF+  +T   ++++F  +  +K+ +    +V
Sbjct  77   RLQNEELSN--DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  178  EDVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSPLIISLPFK  237
               +L IL+PAF  S+L+ AF+IG+++F+PF+ ID++V++IL+AMGMMM+SP+ +SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  238  IMLFVLVDGWALIMGTLAASF  258
            +++FVLVDGW+L++G L +S+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

283) fliP in NC_010501


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  132 bits (484),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 85/201 (43%), Positives = 145/201 (73%), Gaps = 10/201 (4%)

Query  60   LSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQVLTGMALFLTMFIMAPV-FD---  115
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV +D   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  116  RVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRL--SKRTDI--AGP  171
            R++++ L         A+Q  ++A  P +DF+  +T   ++ +F  +  +K+ +    + 
Sbjct  77   RLQNEELSN--DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  172  DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK  231
               +L IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  232  IMLFVLVDGWALIMGTLAGSF  252
            +++FVLVDGW+L++G L GS+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

284) fliP in NC_008593


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  132 bits (483),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 86/208 (42%), Positives = 149/208 (72%), Gaps = 8/208 (3%)

Query  53   IKLLIMLTVISLLPSFLVMMTSFTRIIVVLGFMRNALGTQQAPPNQILVGLALFLTIFIM  112
            I LL+ML+V++LL   +VM T+F ++ VV++++RNALG QQ PPN  + GLAL LTIFIM
Sbjct  11   IALLFMLSVLPLL---VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIM  67

Query  113  TPTYKTINKEAIKPFLENKITQ-TEALNNAA-KPMREFMLKQTRDKDLELFLDVSKTDKK  170
            +P    ++    +  L N I   ++ +++ A  P R+F+ ++T   ++ +F D+ +    
Sbjct  68   APVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  171  NITKENV---PMYVVIPSFIISELKTAFKIGFLLFVPFLIIDIVVASVLMSMGMFMLPPV  227
            +  +++V   ++ +++P+F +S+L+ AFKIG+LLF+PF+ ID++V+++L++MGM M++P+
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  228  MISLPFKLLLFVMVDGWYLLVKSLVMGY  255
             +SLPFKLL+FV+VDGW L++  LV +Y
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

285) Psefu_1935 in NC_015556


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  132 bits (483),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 82/199 (42%), Positives = 147/199 (74%), Gaps = 6/199 (3%)

Query  66   LSFIPAFLMLMTSFTRIIIVFSILRQALGLQQTPSNQILIGLALFLTMFIMAPVFDQINR  125
            LS +P ++++ T+F ++ +VFS+LR+ALG+QQ P+N  + GLAL LT+FIMAPV  +++ 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  126  EALQPYLNQQLPA--QQAIERAEVPIKNFMLAQTRESDLELFVRL--SKRTDI--ATPEA  179
               +  L++++ A  +Q  + A VP ++F+  +T   ++ +F  +  +K+ +    +  +
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  180  APLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSPLIISLPFKIM  239
             +L IL+PAF  S+L+ AF+IG+++F+PF+ ID++V++IL+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  240  LFVLIDGWALIMGTLASSF  258
            +FVL+DGW+L++G L +S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

286) L483_24060 in NC_021491


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  132 bits (485),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 84/201 (42%), Positives = 144/201 (72%), Gaps = 10/201 (4%)

Query  56   LSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPV----FD  111
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV      
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  112  RVNQDALQPYLKEQMTAQQAIDKAQVPLKDFMLAQTRQSDLDLFMRL--SKRTDI--AGP  167
            R++++ L         A+Q  ++A VP +DF+  +T   ++ +F  +  +K+ +    + 
Sbjct  77   RLQNEELSN--DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  168  DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK  227
               +L IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  228  IMLFVLVDGWALIMGTLASSF  248
            +++FVLVDGW+L++G L +S+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

287) Desca_1786 in NC_015565


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  132 bits (485),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 83/207 (41%), Positives = 149/207 (72%), Gaps = 6/207 (2%)

Query  56   KLLIFLSLLAMVPAFLIMLTSFTRIVVVLSFLRSALGTQQTPPNQVLVGLALFLTIFIMS  115
            +L+ +L +L+++P +++M T+F ++ VV+S+LR+ALG QQ PPN  + GLAL LTIFIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  116  PVYKDMNKNAIQPYLANQLTY--EQAADKAIQPLKAFMARQTREKDLGLFISVAKMDKP-  172
            PV  D++    +  L+N++    +Q  ++A+ P + F+ R+T   ++ +F  + +   P 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  173  ---KNINEVPMSVLVPAFVISELKTAFQIGFIIFVPFLVIDMVVASTLMSMGMFMLPPVM  229
                +++  ++ +L+PAF +S+L+ AF+IG+++F+PF+ ID++V++ L++MGM M++P+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  230  VSLPFKLLLFVMVDGWYLVVKSLVESF  256
            +SLPFKLL+FV+VDGW LV+  LV S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

288) fliP in NC_021499


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  131 bits (481),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 86/199 (44%), Positives = 147/199 (74%), Gaps = 6/199 (3%)

Query  56   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTMFIMAPVFDRVNR  115
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + GLAL LT+FIMAPV   V+ 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  116  DALQPYLNEQLSA-PDALAKAE-VPIKDFMLAQTRASDLELFMRL--SKRTDI--ASPDA  169
               +  L+++++A ++ + +   VP +DF+  +T   ++ +F  +  +K+ +    S  +
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  170  APLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIM  229
             +L IL+PAF  S+L+ AF+IG+++F+PF+ IDL+V+++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  230  LFVLVDGWALVIGTLASSF  248
            +FVLVDGW+LV+G L +S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

289) Entcl_1801 in NC_014618


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  131 bits (481),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 148/206 (72%), Gaps = 8/206 (3%)

Query  44   TLVFITSLTFLPAILLMMTSFTRIIIVFGLLRSALGTASAPPNQVLLGLALFLTFFIMSP  103
            +L+F+  L+ LP +++M T+F ++ +VF+LLR+ALG    PPN  + GLAL LT+FIM+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  104  VIDKIYTD-AYQPFNDNKITLEQAIDKGA-QPLREFMLRQTREADLALFARLSHSE-PIQ  160
            V   + +    + ++++  +L + ID+ A  P R+F+ R+T   ++++F  + ++  P +
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  161  GPEAV---PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATI  217
              ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T+
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  218  ALPFKLMLFVLVDGWQLLVGSLAQSF  243
            +LPFKL++FVLVDGW L++G L  S+
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

290) fliP in NC_013939


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  131 bits (480),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 87/190 (46%), Positives = 132/190 (70%), Gaps = 6/190 (3%)

Query  62   MVTSFTRLIIVFSFLRSALGTQQSPPNQVLIGLALFLTFFIMSPVLNDMYKNAVQPYMDG  121
            M T+F +L +VFS+LR+ALG QQ PPN  + GLAL LT+FIM+PV  D+     +  +  
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85

Query  122  KLNFTQALVEAKK--PLRKFLLKNTRKKELLTFIEISKVQRPKT-PDDI-PDSVLI--PA  175
             +      ++ +   P R FL +NT   ++  F +I + ++P    D + PDS+LI  PA
Sbjct  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145

Query  176  FITSELQTAFEIGFLLFLPFLVIDFVVASVLLSMGMMMLPPVMISLPFKILLFVLVDGWG  235
            F  S+L+ AF IG+LLFLPF+ ID++V+++LL+MGMMM++P+ +SLPFK+L+FVLVDGW+
Sbjct  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205

Query  236  LIVGSMVKSF  245
            L++G +V S+
Sbjct  206  LVLGQLVGSY  215

291) SFHH103_04305 in NC_018294


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  131 bits (480),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 78/177 (45%), Positives = 120/177 (68%), Gaps = 0/177 (0%)

Query  40   LVRNALGTQTIPPNIVLYAAALILTMFVSAPIAEQTYDRITDPRLRYQSLDDWAEAAKAG  99
            L+RNALG Q +PPNI +Y+ AL+LT+F+ AP++ +   R+ +  L  +      +  + +
Sbjct  39   LLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNA  98

Query  100  SQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRARVTADDFAILVPSFLISELKRAFEIG  159
              P  + L++ T+ EQ  FF    ++ WPE  R  V +D + IL+P+F +S+L+ AF IG
Sbjct  99   LVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIG  158

Query  160  FLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDGWSRLMHGLVLSY  216
            +LL+LPF+ IDLIV+ IL+AMGM MVSP  +++PFKL++FV +DGWS ++  LV SY
Sbjct  159  LLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

292) USDA257_p02850 in NC_018179


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  131 bits (480),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 78/177 (45%), Positives = 120/177 (68%), Gaps = 0/177 (0%)

Query  40   LVRNALGTQTIPPNIVLYAAALILTMFVSAPIAEQTYDRITDPRLRYQSLDDWAEAAKAG  99
            L+RNALG Q +PPNI +Y+ AL+LT+F+ AP++ +   R+ +  L  +      +  + +
Sbjct  39   LLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNA  98

Query  100  SQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRARVTADDFAILVPSFLISELKRAFEIG  159
              P  + L++ T+ EQ  FF    ++ WPE  R  V +D + IL+P+F +S+L+ AF IG
Sbjct  99   LVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIG  158

Query  160  FLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDGWSRLMHGLVLSY  216
            +LL+LPF+ IDLIV+ IL+AMGM MVSP  +++PFKL++FV +DGWS ++  LV SY
Sbjct  159  LLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

293) fliP in NC_009253


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  131 bits (480),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 87/207 (43%), Positives = 147/207 (72%), Gaps = 6/207 (2%)

Query  56   KLLIFLTLLSMVPAFLMMLTSFTRIIVVLSFLRSALGTQQTPPNQVLIGLALFLTIFIMN  115
            +L+ +L +LS++P +++M T+F ++ VV+S+LR+ALG QQ PPN  + GLAL LTIFIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  116  PVYQDINKNSIQPYLANQL-TYEQATDQAA-KPLRNFMVRQTREKDLGLFLNIAKMDKPK  173
            PV  D++    +  L+N++ +  +  DQ A  P R+F+ R+T   ++ +F +I +   P 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  174  NANEV----PMSVLVPAFVISELKTAFQIGFILFVPFLVIDMVVASTLMSMGMFMLPPVM  229
               +     ++ +L+PAF +S+L+ AF+IG++LF+PF+ ID++V++ L++MGM M++P+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  230  VALPFKLLLFVMVDGWYLVVKSLVESF  256
            ++LPFKLL+FV+VDGW LV+  LV S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

294) fliP in NC_012997


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  131 bits (479),  Expect = 6e-32, Method: Compositional matrix adjust.
 Identities = 85/207 (42%), Positives = 147/207 (72%), Gaps = 6/207 (2%)

Query  81   QILMLMTALTFLPAILMMMTSFTRIIIVFAILRQAMGLQQSPSNQILIGLALFLTLFIMT  140
            Q++ L+  L+ LP +++M T+F ++ +VF++LR+A+G+QQ P+N  + GLAL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  141  PV-LDEVNRTALQPYMNEQMSARQALDNAKL-PFHAFMIANTRESDLDLFFRIGDIA-PV  197
            PV LD   R   +   N+  +  + +D+  L P++ F+  NT   ++ +F  I +   P 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  198  ATPQDV---PFTVLMPAFVTSELKTAFQIGFIIFIPFLVIDIVVASVLMAMGMMMLSPLI  254
               + V   ++ +LMPAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  255  ISLPFKIMLFVLVDGWGLIMGTLAASF  281
            +SLPFK+++FVLVDGW+L++G L +S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

295) fliP in NC_011420


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  130 bits (475),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 87/207 (43%), Positives = 148/207 (72%), Gaps = 6/207 (2%)

Query  52   QLVALLTVLSLAPSILIMMTCFVRIVIVLSFLRSAMGTQQVPPNQVLVSLALFLTFFIMA  111
            QL+ALL +LS+ P +++M T F+++ +V+S+LR+A+G QQVPPN  + +LAL LT+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  112  PVMQESYANGIRPLINEDIDELTAF--NRAVEPFHGFMMKHVRERDLQLFLDIAKTG-PV  168
            PV  +  A      +++DI+ L+    + A+ P+++F+ ++    ++ +F DI +   P 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  169  ---ADPKDVPLQVVIPAFMLSELKRAFEIGFLVFVPFLVIDMVVASVLMSMGMMMLPPTL  225
                  K  +L +++PAF LS+L+ AF IG+L+F+PF+ ID++V+++L++MGMMM++P  
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  226  IALPFKVIFFVLVDGWYLIVGSLVQSF  252
            ++LPFK++ FVLVDGW L++G LV S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

296) fliP in NC_010322


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  130 bits (475),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 84/201 (42%), Positives = 145/201 (73%), Gaps = 10/201 (4%)

Query  56   LSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPV-FD---  111
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV +D   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  112  RVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRL--SKRTDI--AGP  167
            R++++ L         A+Q  ++A  P +DF+  +T   ++ +F  +  +K+ +    + 
Sbjct  77   RLQNEELSN--DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  168  DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK  227
               +L IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  228  IMLFVLVDGWALIMGTLASSF  248
            +++FVLVDGW+L++G L +S+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

297) fliP in NC_019905


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  130 bits (475),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 84/201 (42%), Positives = 145/201 (73%), Gaps = 10/201 (4%)

Query  56   LSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPV-FD---  111
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV +D   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  112  RVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRL--SKRTDI--AGP  167
            R++++ L         A+Q  ++A  P +DF+  +T   ++ +F  +  +K+ +    + 
Sbjct  77   RLQNEELSN--DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  168  DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK  227
               +L IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  228  IMLFVLVDGWALIMGTLASSF  248
            +++FVLVDGW+L++G L +S+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

298) Daud_1753 in NC_010424


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  130 bits (478),  Expect = 6e-32, Method: Compositional matrix adjust.
 Identities = 87/211 (42%), Positives = 148/211 (71%), Gaps = 9/211 (4%)

Query  57   SSVRLLLFLTVISLLPAFLVMVTSFTRIVVVLAFLRAGLGIYQAPPGSVLIGLALFLTVF  116
            SS +L+ +L ++S+LP ++VM T+F ++ VV+++LR +LG+ Q PP   + GLAL LT+F
Sbjct  6    SSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIF  65

Query  117  IMAPVYAQVNEQAIEPFLRGEIDQVEAQ--ERAAGPLREFMLRHTREKDLDLFVRMAEIE  174
            IMAPV  +V+ +  +  L  +I+ +  Q  + A  P R+F+ R+T   ++ +F  + +  
Sbjct  66   IMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNK  125

Query  175  ------NPVPNELPLTVVIPAFIISELKTAFTMGFMLYLPFLIIDMVVASILLSMGMFML  228
                  ++V  + +L +++PAF +S+L+ AF +G++L+LPF+ ID++V++ILL+MGM M+
Sbjct  126  WPERYRDSVKPD-SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  229  PPVMISLPFKLLLFVLVDGWYLVVRSLVESF  259
            +P+ +SLPFKLL+FVLVDGW LV+  LV S+
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

299) Rta_29680 in NC_015677


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  130 bits (476),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 92/209 (45%), Positives = 158/209 (76%), Gaps = 3/209 (1%)

Query  11   PLLAIIFAIGFLPFVAMMVTSYTKIVVVLGLVRNALGVQQVPPNMMLNGIAIIISVYIVA  70
             L+A++F ++ LP++ +M T++ K+ VV++L+RNALGVQQVPPN+ + G+A++++++I+A
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  71   PLFMDSFEALNKPAVAEGGGARQVASVVEAAREPVRRFLDKHAHAREKAFFLKSVSAIWT  130
            P+ +D    L++  ++++ GA     + + A  P R FL+++++  + +FF   V   W 
Sbjct  69   PVGLDVQARLQNEELSNDIGA-LAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW-  126

Query  131  PERAK-TVRPDDLIILAPAFTLSELTEAFKIGFLIYlafvvvdlvvanvllalglSQVTP  189
            PER + +V+PD L+IL PAFTLS+L EAFKIG+L++L+FV +DL+V+N+LLA+G+  V+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  190  TQIAIPFKLLLFVVMDGWSVLLHGLVMTY  218
              +++PFKLL+FV++DGWS++L  LV +Y
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

300) YSA_08109 in NC_017986


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  130 bits (476),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 83/199 (42%), Positives = 144/199 (73%), Gaps = 6/199 (3%)

Query  56   LSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLNGMALFLTMFIMAPVFERVNQ  115
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV   V+ 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  116  DALQPYLKEQMTA--QQAIDKAQGPLKDFMLAQTRQSDLDLFMRL--SKRTDI--AGPDQ  169
               +  L +++ A  +Q  ++A  P +DF+  +T   ++ +F  +  +K+ +    +   
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  170  VPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIM  229
             +L IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  230  LFVLVDGWALIMGTLASSF  248
            +FVLVDGW+L++G L +S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

301) fliP in NC_009512


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  130 bits (476),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 83/199 (42%), Positives = 144/199 (73%), Gaps = 6/199 (3%)

Query  56   LSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLNGMALFLTMFIMAPVFERVNQ  115
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV   V+ 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  116  DALQPYLKEQMTA--QQAIDKAQGPLKDFMLAQTRQSDLDLFMRL--SKRTDI--AGPDQ  169
               +  L +++ A  +Q  ++A  P +DF+  +T   ++ +F  +  +K+ +    +   
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  170  VPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIM  229
             +L IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  230  LFVLVDGWALIMGTLASSF  248
            +FVLVDGW+L++G L +S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

302) fliP in NC_017530


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  129 bits (474),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 84/201 (42%), Positives = 145/201 (73%), Gaps = 10/201 (4%)

Query  56   LSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPV-FD---  111
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV +D   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  112  RVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRL--SKRTDI--AGP  167
            R++++ L         A+Q  ++A  P +DF+  +T   ++ +F  +  +K+ +    + 
Sbjct  77   RLQNEELSN--DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  168  DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK  227
               +L IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  228  IMLFVLVDGWALIMGTLASSF  248
            +++FVLVDGW+L++G L +S+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

303) fliP in NC_018220


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  129 bits (474),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 84/201 (42%), Positives = 145/201 (73%), Gaps = 10/201 (4%)

Query  56   LSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPV-FD---  111
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV +D   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  112  RVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRL--SKRTDI--AGP  167
            R++++ L         A+Q  ++A  P +DF+  +T   ++ +F  +  +K+ +    + 
Sbjct  77   RLQNEELSN--DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  168  DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK  227
               +L IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  228  IMLFVLVDGWALIMGTLASSF  248
            +++FVLVDGW+L++G L +S+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

304) fliP in NC_002947


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  129 bits (474),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 84/201 (42%), Positives = 145/201 (73%), Gaps = 10/201 (4%)

Query  56   LSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPV-FD---  111
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV +D   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  112  RVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRL--SKRTDI--AGP  167
            R++++ L         A+Q  ++A  P +DF+  +T   ++ +F  +  +K+ +    + 
Sbjct  77   RLQNEELSN--DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  168  DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK  227
               +L IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  228  IMLFVLVDGWALIMGTLASSF  248
            +++FVLVDGW+L++G L +S+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

305) PPS_3758 in NC_015733


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  129 bits (474),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 83/201 (42%), Positives = 143/201 (72%), Gaps = 10/201 (4%)

Query  57   LSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPV----FD  112
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIMAPV      
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  113  RVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRL--SKRTDI--AGP  168
            R++++ L         A+Q  ++A  P +DF+  +T   ++ +F  +  +K+ +    + 
Sbjct  77   RLQNEELSN--DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  169  DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK  228
               +L IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  229  IMLFVLVDGWALIMGTLASSF  249
            +++FVLVDGW+L++G L +S+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

306) KKY_1854 in NC_016078


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 86/193 (45%), Positives = 130/193 (68%), Gaps = 10/193 (5%)

Query  82   VMVTSFTRIVVVLSLLRTAIGLQTAPPNSVMISLALFLTAFIMAP-TLQQSYEVGIEPLV  140
            VM T+F ++ VV+SLLR A+G+Q  PPN  + +LAL LT FIMAP  L+    +  E L 
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  141  AGEVEIVEAIDLAS-GPLHEFMRTHVRPQDVMLFMDLTETPAPE------NPEDLELRIL  193
             +   + + ID  +  P ++F++ +   ++V +F D+ +   PE      +P+ L   IL
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSL--LIL  142

Query  194  IPAFMISELRRAFEIGFLLFLPFVVIDMVVASVLMSMGMMMLPPVIISLPFKLIFFVLVD  253
            +PAF +S+L  AF IG+LLFLPFV ID++V+++L++MGMMM++P+ +SLPFKL+ FVLVD
Sbjct  143  MPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVD  202

Query  254  GWHLVAGSLIRSF  266
            GW LV G L+ S+
Sbjct  203  GWSLVLGQLVGSY  215

307) fliP in NC_015391


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  129 bits (473),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 84/199 (43%), Positives = 139/199 (70%), Gaps = 6/199 (3%)

Query  61   LSLAPTFLVLTTCFTRIIVVLSFVRSSLGTQQNPPNLVLMGIALFLSLFIMQPVYTDVMN  120
            LS+ P ++V+ T F ++ VV+S++R++LG QQ PPN+ + G+AL L++FIM PV  DV  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  121  EAITPYINEEISGQA-AFESAEL-PIKEFMYKQTRDEDIQLFLDISETAKP----ADVKE  174
                  ++++I++ A  ++   L P ++F+ ++T  E++ +F DI +   P      VK 
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  175  LPLTVAIPAFIISELRTAFSIGFLIFIPFLVIDIVVASILMSMGMFMLSPVMISLPFKLL  234
             +L + +PAF +S+L  AF IG+L+F+PF+ ID++V++IL++MGM M+SP+ +SLPFKLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  235  LFVLVDGWYLVVESLVTGF  253
            +FVLVDGW LV+  LV ++
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

308) Desru_1250 in NC_015589


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 80/187 (43%), Positives = 135/187 (73%), Gaps = 6/187 (3%)

Query  80   SFTRIVVVLSFLRSALGTQQTPPNQVLIGLALFLTIFIMNPVYRDINQNAVQPYLANQL-  138
            +F ++ VV+S+LR+ALG QQ PPN  + GLAL LTIFIM PV  D++    +  L+N++ 
Sbjct  29   AFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIG  88

Query  139  TYEQAVDQAAQ-PLRDFMVRQTREKDLGLFLSVAKMEKPQ----NINAVPMSVIVPAFII  193
            +  + +DQ A  P RDF+ R+T   ++ +F  + +   P+    ++++ ++ +++PAF +
Sbjct  89   ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTL  148

Query  194  SELKTAFQIGFILFVPFLVIDMVVASTLMSMGMFMLPPVMVSLPFKLLLFVMVDGWYLVV  253
            S+L+ AF+IG++LF+PF+ ID++V++ L++MGM M++P+ +SLPFKLL+FV+VDGW LV+
Sbjct  149  SQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVL  208

Query  254  KSLVESF  260
              LV S+
Sbjct  209  GQLVGSY  215

309) fliP in NC_007348


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  129 bits (472),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 90/210 (43%), Positives = 143/210 (69%), Gaps = 6/210 (2%)

Query  61   SIQTLVLLTSLSFLPAAVLMMTGFTRIVIVLGLLRNALGTASSPPNQVLVGLSLFLTFFV  120
            S Q + LL  LS LP  V+M T+F ++ +V++LLRNALG    PPN  + GL+L LT+F+
Sbjct  7    SYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFI  66

Query  121  MSPV-LDRVYNDAYKPLSENRISLETAMAKAA-EPLKGFMLKQTREKDLAMFAQMAKA--  176
            M+PV LD         LS++  +L   + + A  P ++F+ ++T   +++ F ++ +   
Sbjct  67   MAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  177  PEM--QGPEEVPMSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAMGMMMVPP  234
            PE   ++    ++ IL+PAF  S+L+ AF+IG+ +F+PF+ IDL+V+++L+AMGMMMV+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  235  ATISLPFKLMLFVLVDGWQLLLGSLAQSFM  264
             T+SLPFKL++FVLVDGW L+LG L  S++
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

310) H650_09085 in NC_021500


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 85/210 (41%), Positives = 147/210 (70%), Gaps = 12/210 (5%)

Query  51   QTLVLMTSLTFLPAILLMMTGFTRIVIVLGLLRNALGTASTPPNQVLLGLALFLTFFVMS  110
            Q + L+  L+ LP +++M T+F ++ +V++LLRNALG    PPN  + GLAL LT+F+M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  111  PV----LNRVYDEAWVPLSQDKISMEVALQKGS-QPLRAFMLKQTREGDLALFSRIAK--  163
            PV      R+ +E    LS+D  ++   +++ +  P R F+ ++T   ++++F+ I +  
Sbjct  69   PVGLDVQARLQNEE---LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNK  125

Query  164  -AEQF-NTADDVPMSILVPAFVTSELKTGFQIGFTMFIPFLIIDLVVASVLMALGMMMVP  221
             +E++ ++    ++ IL+PAF  S+L+ +F+IG+ +F+PF+ IDL+V+++L+A+GMMMV+
Sbjct  126  WPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVS  185

Query  222  PATISLPFKLMLFVLVDGWQLVIGSLAQSF  251
            P T+SLPFKL++FVLVDGW LV+G L  S+
Sbjct  186  PMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

311) fliP in NC_010694


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  128 bits (470),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 84/199 (43%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPV-FDKIY  109
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GL+L LT+FIM+PV +D   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  110  TDAYQPFSEDKISMQEAIDKGA-QPLREFMLRQTREADLALFARLANTA-PIAGPEAV--  165
                + +S+D  ++ + ID+ A  P R+F+ R+T   ++++F  + +   P    ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

312) D782_1687 in NC_020063


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  128 bits (470),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 142/199 (72%), Gaps = 6/199 (3%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYT  110
            L+ +P +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   + +
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEDKISLQEAMDKGS-QPLREFMLRQTREADLALFARLANSA-PI---EGPEA  164
                + +S+D  +L + +D+ +  P R+F+ R+T   ++++F  + ++  P    ++  +
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  165  VPLRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             +L IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

313) fliP in NC_007974


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  128 bits (470),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 91/210 (44%), Positives = 144/210 (69%), Gaps = 6/210 (2%)

Query  60   SIQTLVLLTSLSFLPAAMLMMTGFTRIIIVLGLLRNALGTASSPPNQVLVGLSLFLTFFV  119
            S Q + LL  LS LP  ++M T+F ++ +V++LLRNALG    PPN  + GL+L LT+F+
Sbjct  7    SYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFI  66

Query  120  MSPV-FDKVYTDAYQPLSENKISL-ETAAQRAAVPLRAFMLRQTREKDLAMFAQMAKT--  175
            M+PV +D       + LS++  +L +   Q A VP R F+ R+T   +++ F ++ +   
Sbjct  67   MAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  176  PEL--QGPEDVPFTVLVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAMGMMMVPP  233
            PE   ++    ++ +L+PAF  S+L+ AF+IG+ +F+PF+ IDL+V+++L+AMGMMMV+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  234  ATISLPFKLMLFVLVDGWQLLLGSLAQSFM  263
             T+SLPFKL++FVLVDGW L+LG L  S++
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

314) fliP in NC_017933


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  128 bits (468),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 147/206 (72%), Gaps = 8/206 (3%)

Query  44   TLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSP  103
            +L+F+  L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  104  V-IDKIYSDAYQPFTENKISMEVALDRGA-QPLREFMLRQTREADLALFAKLANTQ-PIQ  160
            V +D       + ++++  ++   +D+ A  P R+F+ R+T   ++++F  + + + P +
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  161  GPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASI  217
              ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P ++
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  218  ALPFKLMLFVLVDGWQLLVGSLAQSF  243
            +LPFKL++FVLVDGW L++G L  S+
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

315) CSSP291_05910 in NC_020260


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  128 bits (468),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 147/206 (72%), Gaps = 8/206 (3%)

Query  44   TLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSP  103
            +L+F+  L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  104  V-IDKIYSDAYQPFTENKISMEVALDRGA-QPLREFMLRQTREADLALFAKLANTQ-PIQ  160
            V +D       + ++++  ++   +D+ A  P R+F+ R+T   ++++F  + + + P +
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  161  GPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASI  217
              ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P ++
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  218  ALPFKLMLFVLVDGWQLLVGSLAQSF  243
            +LPFKL++FVLVDGW L++G L  S+
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

316) fliP in NC_013282


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  128 bits (469),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 142/199 (72%), Gaps = 6/199 (3%)

Query  29   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPV-IDKIY  87
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV +D   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  88   SDAYQPFTENKISMEVALDRGA-QPLREFMLRQTREADLALFAKLANTQ-PIQGPEAV--  143
                + ++++  ++   +D+ A  P R+F+ R+T   ++++F  + + + P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  144  -PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASIALPFKLM  202
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P +++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  203  LFVLVDGWQLLVGSLAQSF  221
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

317) fliP in NC_009792


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  128 bits (467),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 82/201 (41%), Positives = 145/201 (73%), Gaps = 10/201 (4%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   + V
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV--GLDV  74

Query  111  DAW---QPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFARLANSG-PLQGPEAV  165
            +A+   + +S++  ++ + +++ A  P R+F+ R+T   ++ +F  + ++  P +  ++V
Sbjct  75   QARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  166  ---PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFK  222
               ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  223  LMLFVLVDGWQLLVGSLAQSF  243
            L++FVLVDGW L++G L  S+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

318) lfiP in NC_013716


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  128 bits (468),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 84/206 (41%), Positives = 145/206 (71%), Gaps = 8/206 (3%)

Query  48   QVLILMTLVGLLPTLVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALCLTMLVMR  107
            Q++ L+ ++++LP LV+M T F ++ +V+SLLR+ALG+QQ PPN  + G+AL LT+++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  108  PIWLNIYDR-AVVPFENDQMTLSDALSTAA-TPLKRFMLAQTNKKAMAQIMTIADVK---  162
            P+ L++  R     + ND  +L++ +   A  P + F+  +T+   ++ +  I + K   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  163  ---GDAADQDLTIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLI  219
               +    + L I++PA+ LS+L+ AF+IG+++++PF+ IDLIV+++L+AMGMMM+SP+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  220  VSLPFKLMLFVLIDGWSLTVGTLTSS  245
            +SLPFKL++FVL+DGWSL +G L +S
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGS  214

319) fliP in NC_009778


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  128 bits (467),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 147/206 (72%), Gaps = 8/206 (3%)

Query  44   TLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSP  103
            +L+F+  L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  104  V-IDKIYSDAYQPFNENKISMEVALDRGA-QPLREFMLRQTREADLALFAKLANTQ-PIQ  160
            V +D       + ++++  ++   +D+ A  P R+F+ R+T   ++++F  + + + P +
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  161  GPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASI  217
              ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P ++
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  218  ALPFKLMLFVLVDGWQLLVGSLAQSF  243
            +LPFKL++FVLVDGW L++G L  S+
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

320) spaP in NC_016830


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  127 bits (465),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 86/195 (45%), Positives = 144/195 (74%), Gaps = 7/195 (3%)

Query  23   GTCYIKFSIVFVIVRNALGLQQVPSnmalnaialmlaiFVMTPVMKQGHDYYKREAVTFT  82
            GT ++K+S+VF ++RNALG+QQVP+N+A+ ++AL+L+IF+M+PV  + +   + E ++  
Sbjct  27   GTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS-N  85

Query  83   DIASVV-DFAENGLGSYKDYLRKYTDPELAQFF-ERAQAFQDETYAGLPADEEVEASLFS  140
            DI+++  ++ +N+L +Y+D+L++ TD E   FF +  Q    E Y     D     SL+ 
Sbjct  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYR----DSVKPDSLLI  141

Query  141  LLPAYALSEIKSAFKIGFYLYLPFVIVDLVISSILLALGMMMMSPVIISVPIKLVLFVAL  200
            L+PA++LS+++ AFKIG+ L+LPFV +DL++S+ILLA+GMMM+SP+ +S+P+KL++FV +
Sbjct  142  LMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLV  201

Query  201  DGWALLSTGLVKQYL  215
            DGW+L+   LV  YL
Sbjct  202  DGWSLVLGQLVGSYL  216

321) M301_1012 in NC_014207


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  127 bits (466),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 135/190 (72%), Gaps = 6/190 (3%)

Query  74   MMTGFTRIIIVLSLLRQALGTQSAPPNQVMVGLALFLTFFVMSPVIDKIYVD-AYQPLSE  132
            M T+F ++ +V+SLLR+ALG Q  PPN  + GLAL LT+F+M+PV   +      + LS+
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85

Query  133  NKITMQEAMDKGA-APLKAFMMKQTREGDLALFVNMAKI---EKI-ETPDQVPLLVLVPA  187
            +  ++ + +D+ A  P + F+ ++T   ++++F ++ +    E+  ++    +LL+L+PA
Sbjct  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145

Query  188  FMTSELKTAFQIGFAIFIPFLIIDMVVASVLMAMGMMMVSPSIVSLPFKLMLFVLVDGWQ  247
            F  S+L+ AF+IG+ +F+PF+ ID++V+++L+AMGMMMVSP  +SLPFKL++FVLVDGW 
Sbjct  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205

Query  248  LLLGSLVQSF  257
            L+LG LV S+
Sbjct  206  LVLGQLVGSY  215

322) fliP in NC_017445


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  127 bits (466),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 85/206 (42%), Positives = 146/206 (71%), Gaps = 8/206 (3%)

Query  44   TLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGP  103
            +L+F+  L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GL+L LT+FIM+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  104  V-FDKMYTDAYQPFSEDKISMQEAIDKGA-QPLREFMLRQTREADLALFARLANTP-PIA  160
            V +D       + +S+D  ++ + ID+ A  P R+F+ R+T   ++++F  + +   P  
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  161  GPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI  217
              ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  218  ALPFKLMLFVLVDGWQLLVSSLAQSF  243
            +LPFKL++FVLVDGW L+++ L  S+
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

323) fliP in NC_017390


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  127 bits (466),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 85/206 (42%), Positives = 146/206 (71%), Gaps = 8/206 (3%)

Query  44   TLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGP  103
            +L+F+  L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GL+L LT+FIM+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  104  V-FDKMYTDAYQPFSEDKISMQEAIDKGA-QPLREFMLRQTREADLALFARLANTP-PIA  160
            V +D       + +S+D  ++ + ID+ A  P R+F+ R+T   ++++F  + +   P  
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  161  GPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI  217
              ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  218  ALPFKLMLFVLVDGWQLLVSSLAQSF  243
            +LPFKL++FVLVDGW L+++ L  S+
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

324) fliP in NC_012214


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  127 bits (466),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 85/206 (42%), Positives = 146/206 (71%), Gaps = 8/206 (3%)

Query  44   TLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGP  103
            +L+F+  L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GL+L LT+FIM+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  104  V-FDKMYTDAYQPFSEDKISMQEAIDKGA-QPLREFMLRQTREADLALFARLANTP-PIA  160
            V +D       + +S+D  ++ + ID+ A  P R+F+ R+T   ++++F  + +   P  
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  161  GPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI  217
              ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  218  ALPFKLMLFVLVDGWQLLVSSLAQSF  243
            +LPFKL++FVLVDGW L+++ L  S+
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

325) hrcR in NC_010996


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  127 bits (466),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 144/202 (72%), Gaps = 6/202 (2%)

Query  17   ISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPV-LQNSW  75
            +S+LP++ V++T+F K+SVV+ ++RNA+G+QQ PPN+ ++++A+VL+ F+M PV L+   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  76   QLLLAHSGDFGT-VSGMADGMIKVA-APLKDFMLKFSDAEVRDFFVQASQKIWANAPATS  133
            +L   ++ +++  ++++A+ + + A  P +DF+ + +D E   FF +  Q+ W++    S
Sbjct  77   RL---QNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDS  133

Query  134  IASDDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPL  193
            + +D + +L P+F +S+L  AF IG+L++LPF+ ID+ VS IL+A+GM M+SP  +S P+
Sbjct  134  VKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF  193

Query  194  KLLLFVSIDGWRRLLEGLVLSY  215
            KLL+FV +DGW  +L  LV SY
Sbjct  194  KLLVFVLVDGWSLVLGQLVGSY  215

326) fliP in NC_012108


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (461),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 83/188 (45%), Positives = 131/188 (70%), Gaps = 6/188 (3%)

Query  75   TPFTRIIVVFHFLRQAIGTQSSPPNQVVVGLALFLTFFIIKPVALDVYQNALNPYLERQI  134
            T+F ++ VVF +LR+A+G Q  PPN  + GLAL LT+FI+ PV+LDV     N  L  +I
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  135  DY--NEAFTAAQVPIRNFLLVNTREADIALFVKGAGVAKPDT-REDV---SLMLLIPAYV  188
            +   ++    A VP R+FL  NT   ++++F        P+  R+ V   SL++L+PA+ 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  189  ISELKTAFIIGFVIYVPFLVIDMVVASVLLAMGMMMLPPVMISLPFKLMLFVLVDGWHLL  248
            +S+L+ AF IG+++++PF+ ID++V+++LLAMGMMM++P+ +SLPFKL++FVLVDGW L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  249  TGSLLKSF  256
             G L+ S+
Sbjct  208  LGQLVGSY  215

327) fliP in NC_012962


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (462),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 83/201 (42%), Positives = 141/201 (71%), Gaps = 10/201 (4%)

Query  57   LGFIPAALLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFMTFFIMSPV---FDK  113
            L+ +P  ++M T+F ++ +V++LLRNALG    PPN  + GLAL +T+FIM+PV    + 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  114  VYQDAYLPFSEDKISLETALENGA-KPLRQFMLRQTRENDLALFARLADQ---PPF-ETA  168
              Q+    +S+D  +L   +++ A  P R+F+ R+T  +++++F  + ++     + ++ 
Sbjct  77   RLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  169  DSVPMRVLMPAFITSELKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFK  228
             + ++ +LMPAF  S+L+ AF+IG+ LF+PF+ IDL+V+++L+A+GMMMV+P T+SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  229  LMLFVLVDGWQLLLGSLAQSF  249
            L++FVLVDGW L+LG L  S+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

328) fliP in NC_014228


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (462),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 87/208 (42%), Positives = 147/208 (71%), Gaps = 12/208 (5%)

Query  71   TLIFITALGFIPAALLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFMTFFIMAP  130
            +L+F+  L+ +P  ++M T+F ++ +V++LLRNALG    PPN  + GLAL +T+FIMAP
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  131  V---FDKVYQDAYLPYNEDKITLEAALDKGS-KPLRQFMLRQTRENDLALFARLADQ---  183
            V    +   Q+  L  ++D  +L   +D+ +  P R+F+ R+T  +++++F  + ++   
Sbjct  70   VGLDVQARLQNEEL--SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  184  EAF-ETADSVPLRVLVPAFITSELKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPA  242
            E + ++  + +L +L+PAF  S+L+ AF+IG+ LF+PF+ IDL+V+++L+A+GMMMV+P 
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  243  TISLPFKLMLFVLVDGWQLLLGSLAQSF  270
            T+SLPFKL++FVLVDGW L+LG L  S+
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

329) fliP in NC_013716


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (461),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 142/199 (72%), Gaps = 6/199 (3%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  E-AYQPFSEEKISMQEALDKGA-QPLREFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R+F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

330) fliP in NC_013971


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 84/206 (41%), Positives = 146/206 (71%), Gaps = 8/206 (3%)

Query  44   TLVFITSLTFLPAILLLMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGP  103
            +L+F+  L+ LP ++++ T+F ++ +VF+LLRNALG    PPN  + GL+L LT+FIM+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  104  V-FDKIYTDAYQPFSEDKISMQEAIDKGA-QPLREFMLRQTREADLALFARLANTP-PIA  160
            V +D       + +S+D  ++ + ID+ A  P R+F+ R+T   ++++F  + +   P  
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  161  GPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI  217
              ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  218  ALPFKLMLFVLVDGWQLLVSSLAQSF  243
            +LPFKL++FVLVDGW L+++ L  S+
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

331) fliP1 in NC_013961


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 84/206 (41%), Positives = 146/206 (71%), Gaps = 8/206 (3%)

Query  44   TLVFITSLTFLPAILLLMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGP  103
            +L+F+  L+ LP ++++ T+F ++ +VF+LLRNALG    PPN  + GL+L LT+FIM+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  104  V-FDKIYTDAYQPFSEDKISMQEAIDKGA-QPLREFMLRQTREADLALFARLANTP-PIA  160
            V +D       + +S+D  ++ + ID+ A  P R+F+ R+T   ++++F  + +   P  
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  161  GPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI  217
              ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  218  ALPFKLMLFVLVDGWQLLVSSLAQSF  243
            +LPFKL++FVLVDGW L+++ L  S+
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

332) fliP in NC_017445


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 85/211 (41%), Positives = 148/211 (71%), Gaps = 14/211 (6%)

Query  45   QTLVLLSSLTFLPAVLLMMTGFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVMS  104
            Q + LL  L+ LP +++M T+F ++ +V++L+RNALG    PPN  + GLAL LT+++M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  105  PVFNQIYEQAWQPLQEDKITMEV-ALEQGVK-----PLRAFMLDQTRENDLAMFAQIAK-  157
            PV  ++  QA+  LQ++ ++ ++ AL + +      P R F+  +T  ++++ F +I + 
Sbjct  69   PVGLDV--QAR--LQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  158  --AGEFKGP-EEVPLGILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMV  214
              +  ++++    +L IL+PAF  S+L+ AF+IG+ +F+PF+ IDL+V++IL+A+GMMMV
Sbjct  125  KWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  215  PPATIALPFKLMLFVLVDGWQLLMGSLAQSF  245
            +P T++LPFKL++FVLVDGW L++G L  S+
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

333) fliP in NC_017390


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (461),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 85/211 (41%), Positives = 148/211 (71%), Gaps = 14/211 (6%)

Query  45   QTLVLLSSLTFLPAVLLMMTGFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVMS  104
            Q + LL  L+ LP +++M T+F ++ +V++L+RNALG    PPN  + GLAL LT+++M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  105  PVFNQIYQQAWQPLQEDKITMEV-ALEQGVK-----PLRAFMLDQTRENDLAMFAQIAK-  157
            PV  ++  QA+  LQ++ ++ ++ AL + +      P R F+  +T  ++++ F +I + 
Sbjct  69   PVGLDV--QAR--LQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  158  --AGEFKGP-EEVPLGILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMV  214
              +  ++++    +L IL+PAF  S+L+ AF+IG+ +F+PF+ IDL+V++IL+A+GMMMV
Sbjct  125  KWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  215  PPATIALPFKLMLFVLVDGWQLLMGSLAQSF  245
            +P T++LPFKL++FVLVDGW L++G L  S+
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

334) fliP in NC_012214


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (461),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 85/211 (41%), Positives = 148/211 (71%), Gaps = 14/211 (6%)

Query  45   QTLVLLSSLTFLPAVLLMMTGFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVMS  104
            Q + LL  L+ LP +++M T+F ++ +V++L+RNALG    PPN  + GLAL LT+++M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  105  PVFNQIYQQAWQPLQEDKITMEV-ALEQGVK-----PLRAFMLDQTRENDLAMFAQIAK-  157
            PV  ++  QA+  LQ++ ++ ++ AL + +      P R F+  +T  ++++ F +I + 
Sbjct  69   PVGLDV--QAR--LQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  158  --AGEFKGP-EEVPLGILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMV  214
              +  ++++    +L IL+PAF  S+L+ AF+IG+ +F+PF+ IDL+V++IL+A+GMMMV
Sbjct  125  KWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  215  PPATIALPFKLMLFVLVDGWQLLMGSLAQSF  245
            +P T++LPFKL++FVLVDGW L++G L  S+
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

335) fliP in NC_021820


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLMGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

336) fliP in NC_016856


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLMGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

337) fliP in NC_017046


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLMGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

338) STMMW_19591 in NC_016854


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLMGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

339) fliP in NC_003197


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLMGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

340) fliP in NC_016810


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLMGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

341) fliP in NC_016857


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLMGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

342) fliP in NC_016860


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLMGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

343) fliP in NC_021151


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLMGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

344) fliP in NC_016863


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLMGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

345) fliP in NC_021814


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLMGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

346) fliP in NC_021505


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (463),  Expect = 8e-31, Method: Compositional matrix adjust.
 Identities = 92/213 (44%), Positives = 156/213 (74%), Gaps = 8/213 (3%)

Query  1    MIGLLAVASLLPFLIAAGTCYIKFSIVFVIVRNALGLQQVPSNMTLNAVALLLAMFVMSP  60
            +I+LL + S+LP+L+  GT ++K+S+VF ++RNALG+QQVP+N+++ ++AL+L++F+M+P
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  61   VVQQGYDYYKENRVEFTRIDAVVDFLD-NGLGGYREYLARYTDPDLAQFFERAQIAREDP  119
            V  +     +++ +    I+A+ + +D N+L  YR++L R TD +   FF+     +   
Sbjct  70   VGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  120  RAVNSEFDERLEP-SLFALLPAYALSEIKAAFKIGFYLYLPFvivdlvvssillalGMMM  178
            R     + + + P SL+ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+ILLA+GMMM
Sbjct  129  R-----YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  179  MSPVIISVPIKLVLFVALDGWSLLSTGLVGQYL  211
            +SP+ +S+P+KL++FV +DGWSL+   LVG YL
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

347) fliP in NC_014306


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (463),  Expect = 8e-31, Method: Compositional matrix adjust.
 Identities = 86/201 (43%), Positives = 144/201 (72%), Gaps = 10/201 (4%)

Query  50   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMGPV---FDK  106
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV    + 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  107  IYQDAYLPFSQDKISMQDAIDKGA-QPLREFMLRQTREADLALFARLSNSP-PLQGPEAV  164
              Q+    +S+D  ++ + ID+ A  P R+F+ R+T   ++++F  + ++  P +  ++V
Sbjct  77   RLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  165  ---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFK  221
               ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  222  LMLFVLVDGWSLLVSSLAQSF  242
            L++FVLVDGWSL+++ L  S+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

348) fliP in NC_005126


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  126 bits (462),  Expect = 9e-31, Method: Compositional matrix adjust.
 Identities = 83/201 (42%), Positives = 141/201 (71%), Gaps = 10/201 (4%)

Query  50   LTFIPAALLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFMTFFIMSPV---FDK  106
            L+ +P  ++M T+F ++ +V++LLRNALG    PPN  + GLAL +T+FIM+PV    + 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  107  VYQDAYLPFSEDKISLETALENGA-KPLRQFMLRQTRENDLALFARLADQ---PPF-ETA  161
              Q+    +S+D  +L   +++ A  P R+F+ R+T  +++++F  + ++     + ++ 
Sbjct  77   RLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  162  DSVPMRVLMPAFITSELKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFK  221
             + ++ +LMPAF  S+L+ AF+IG+ LF+PF+ IDL+V+++L+A+GMMMV+P T+SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  222  LMLFVLVDGWQLLLGSLAQSF  242
            L++FVLVDGW L+LG L  S+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

349) fliP in NC_007802


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (459),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 93/216 (44%), Positives = 141/216 (66%), Gaps = 13/216 (6%)

Query  38   SLTARSFQLIALISVLSLAPGLAVMVTCFPFVVTVLSILRQAIGLQQSPPNMLIVSLALF  97
             L   S+QLIAL+ +LS+ P L VM T F  +  V+S+LR+A+G+QQ PPN+ I +LAL 
Sbjct  2    ELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALV  61

Query  98   LTYFVMAPV-FEEAYRAGIAPLIA--GELTPD-AAIPLIYEPFRGFMLNRVDTSTLVSLA  153
            LT F+MAPV ++   R     L    G L+ +    +L+  P+R+F+    D   +  + 
Sbjct  62   LTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALV--PYRDFLQRNTDIEQVTFFN  119

Query  154  ELRPGA------DAANPDPS-VLIPSFMLSEVERAFQIGFLVFLPFLVIDLVVAAILMSM  206
            ++          D+ +PD+  +L+P+F LS+++ AF+IG+L+FLPF+ IDL+V+ IL++M
Sbjct  120  DIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAM  179

Query  207  GMMMVPPAIVSLPFKLAFFVVADGWALITGALVRSY  242
            GMMMV+P  +SLPFKL  FV+ DGW+L+ G LV SY
Sbjct  180  GMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

350) NT01EI_2431 in NC_012779


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (457),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 87/206 (43%), Positives = 146/206 (71%), Gaps = 8/206 (3%)

Query  45   TLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIMSP  104
            +L+F+  LS LP  +++ T+F ++ +V++LLRNALG    PPN  + GLAL LT+FIM+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  105  V-LDKIYQEAYQPFSEQKISMETALDRGA-KPLRAFMLRQTRETDLALFSRLAKQ--PEM  160
            V LD   +   + +S++  ++   +D+ A  P R F+ R+T   ++++F+ + ++  PE 
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  161  --QGPEDVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI  218
              ++    ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  219  SLPFKLMLFVLVDGWQLLLGSLAQSF  244
            SLPFKL++FVLVDGW L+LG L  S+
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

351) TOPB45_1333 in NC_015682


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (457),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 78/187 (42%), Positives = 135/187 (73%), Gaps = 6/187 (3%)

Query  51   SFTRLIVVFSILRHAIGTAQTPPNQVLISLALFLTFFIMAPTFKEAYESALVPYLNKKID  110
            +F +L VVFS+LR+A+G  Q PPN  + +LAL LT+FIMAP   +         L++ I+
Sbjct  29   AFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIG  88

Query  111  E--KEMFKRASKPFKEFMFKNTREKDLALFIKLRNEERP-RTPEDV---SIFTLIPAFMI  164
                ++ + A  P+++F+ +NT   ++++F  + ++ +P R  + V   S++ L+PAF +
Sbjct  89   ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTL  148

Query  165  SELKTAFQIGFLLYIPFLVIDMVVSSVLISMGILMLPPMMISLPIKLLLFVLVDGWNLLV  224
            S+L+ AF+IG+LL++PF+ ID++VS++L++MG++M++PM +SLP+KLL+FVLVDGW+L++
Sbjct  149  SQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVL  208

Query  225  GSLVKSF  231
            G LV S+
Sbjct  209  GQLVGSY  215

352) fliP in NC_009436


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (459),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 142/199 (72%), Gaps = 6/199 (3%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYA  110
            L+ +P +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   + A
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEDKISMQVALEKGA-QPLREFMLRQTREADLALFARLANEG-PIQGPEAV--  165
                + +S+D  ++   +++ A  P R+F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

353) fliP in NC_021500


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 142/199 (72%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYT  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   + +
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSENKISVDVALERGA-QPLREFMLRQTREADLALFARLSNSP-PIQGPEAV--  165
                + +S++  ++   +++ A  P R+F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -SMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             S+ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVSSLAQSF  243
            +FVLVDGW L+++ L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

354) lfiP in NC_017626


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (457),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 84/206 (41%), Positives = 144/206 (70%), Gaps = 8/206 (3%)

Query  46   QVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMR  105
            Q++ L+ ++++LP +V+M T F ++ +V+SLLR+ALG+QQ PPN  + G+AL LT+++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  106  PVWLNIYDH-AVVPFENDQITLTDALSTAA-TPLKRFMLAQTDKKAMAQIMTIGGAK---  160
            PV L++  +     + ND  +L++ +   A  P + F+  +TD   ++ +  I   K   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  161  ---GNAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLI  217
               ++   + L I++PA+ LS+L+ AF+IG+++++PF+ IDLIV+++L+AMGMMM+SP+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  218  VSLPFKLMLFVLIDGWSLTIGTLTTS  243
            +SLPFKL++FVL+DGWSL +G L  S
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGS  214

355) fliP in NC_010498


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 84/206 (41%), Positives = 144/206 (70%), Gaps = 8/206 (3%)

Query  46   QVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMR  105
            Q++ L+ ++++LP +V+M T F ++ +V+SLLR+ALG+QQ PPN  + G+AL LT+++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  106  PVWLNIYDH-AVVPFENDQITLTDALSTAA-TPLKRFMLAQTDKKAMAQIMTIGGAK---  160
            PV L++  +     + ND  +L++ +   A  P + F+  +TD   ++ +  I   K   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  161  ---GNAADQDLTIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLI  217
               ++   + L I++PA+ LS+L+ AF+IG+++++PF+ IDLIV+++L+AMGMMM+SP+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  218  VSLPFKLMLFVLIDGWSLTIGTLTTS  243
            +SLPFKL++FVL+DGWSL +G L  S
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGS  214

356) fliP in NC_011751


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (457),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 84/206 (41%), Positives = 144/206 (70%), Gaps = 8/206 (3%)

Query  46   QVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMR  105
            Q++ L+ ++++LP +V+M T F ++ +V+SLLR+ALG+QQ PPN  + G+AL LT+++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  106  PVWLNIYDH-AVVPFENDQITLTDALSTAA-TPLKRFMLAQTDKKAMAQIMTIGGAK---  160
            PV L++  +     + ND  +L++ +   A  P + F+  +TD   ++ +  I   K   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  161  ---GNAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLI  217
               ++   + L I++PA+ LS+L+ AF+IG+++++PF+ IDLIV+++L+AMGMMM+SP+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  218  VSLPFKLMLFVLIDGWSLTIGTLTTS  243
            +SLPFKL++FVL+DGWSL +G L  S
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGS  214

357) fliP in NC_015761


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALEKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +++ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

358) A464_2127 in NC_021870


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALEKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +++ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

359) fliP in NC_010067


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

360) fliP in NC_011149


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

361) fliP in NC_021844


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

362) SBOV20391 in NC_022241


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

363) fliP in NC_006905


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

364) fliP in NC_021818


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

365) fliP in NC_011205


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

366) fliP in NC_011294


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

367) fliP in NC_011274


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (459),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 146/206 (71%), Gaps = 8/206 (3%)

Query  44   TLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSP  103
            +L+F+  L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  104  VIDKIYVD-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQ  160
            V   +      + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  161  GPEAV---PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATI  217
              ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T+
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  218  ALPFKLMLFVLVDGWQLLVGSLAQSF  243
            +LPFKL++FVLVDGW L++G L  S+
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

368) fliP in NC_022221


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

369) fliP in NC_016831


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

370) fliP in NC_021810


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

371) SU5_02582 in NC_017623


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

372) fliP in NC_021812


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

373) fliP in NC_011083


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

374) fliP in NC_020307


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

375) fliP in NC_011080


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

376) SN31241_30780 in NC_021902


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

377) fliP in NC_010102


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

378) fliP in NC_012125


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

379) fliP in NC_021984


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

380) fliP in NC_011094


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

381) STY2187 in NC_003198


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

382) STBHUCCB_9660 in NC_016832


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

383) fliP in NC_021176


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

384) fliP in NC_004631


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 141/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P R F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

385) CCALI_00613 in NC_021487


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (457),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 83/195 (43%), Positives = 131/195 (68%), Gaps = 6/195 (3%)

Query  73   PSILIMMTSFTRLIIVFSLLRTALGAPQIPPNQVLVGLSLFLTLFIMRPTLQAINQDAFQ  132
            P +++M T+F +L +VFSLLR ALG  Q+PPN  + GL+L LT+FIM P    ++    +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  133  PYLRKQINI--EQAIQRAEDPLRAFMIRQTYKSDLSFFLNLSHAPRP-RTAEDV---SLI  186
              L ++I    +Q  Q A  P R F+ R+T   +++FF ++ +  +P R  + V   SL+
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  187  TLIPAFLTSELKTAFIIGFYIYLPFLVIDIVVASTLMSMGMMMLPPTIISLPAKLLLFVL  246
             L+PAF  S+L+ AF IG+ ++LPF+ ID++V++ L++MGMMM++P  +SLP KLL+FVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  247  ADGWTLLIGSLAHSF  261
             DGW+L++G L  S+
Sbjct  201  VDGWSLVLGQLVGSY  215

386) ETAC_10205 in NC_020796


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (456),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 87/206 (43%), Positives = 146/206 (71%), Gaps = 8/206 (3%)

Query  45   TLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIMSP  104
            +L+F+  LS LP  +++ T+F ++ +V++LLRNALG    PPN  + GLAL LT+FIM+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  105  V-LDKIYQDAYQPFSEQKISMETALDRGA-KPLRAFMLRQTRETDLALFSRLAKQ--PEM  160
            V LD   +   + +S++  ++   +D+ A  P R F+ R+T   ++++F+ + ++  PE 
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  161  --QGPEDVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI  218
              ++    ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  219  SLPFKLMLFVLVDGWQLLLGSLAQSF  244
            SLPFKL++FVLVDGW L+LG L  S+
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

387) fliP in NC_013508


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (456),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 87/206 (43%), Positives = 146/206 (71%), Gaps = 8/206 (3%)

Query  45   TLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIMSP  104
            +L+F+  LS LP  +++ T+F ++ +V++LLRNALG    PPN  + GLAL LT+FIM+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  105  V-LDKIYQDAYQPFSEQKISMETALDRGA-KPLRAFMLRQTRETDLALFSRLAKQ--PEM  160
            V LD   +   + +S++  ++   +D+ A  P R F+ R+T   ++++F+ + ++  PE 
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  161  --QGPEDVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI  218
              ++    ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  219  SLPFKLMLFVLVDGWQLLLGSLAQSF  244
            SLPFKL++FVLVDGW L+LG L  S+
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

388) fliP in NC_017309


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (456),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 87/206 (43%), Positives = 146/206 (71%), Gaps = 8/206 (3%)

Query  45   TLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIMSP  104
            +L+F+  LS LP  +++ T+F ++ +V++LLRNALG    PPN  + GLAL LT+FIM+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  105  V-LDKIYQDAYQPFSEQKISMETALDRGA-KPLRAFMLRQTRETDLALFSRLAKQ--PEM  160
            V LD   +   + +S++  ++   +D+ A  P R F+ R+T   ++++F+ + ++  PE 
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  161  --QGPEDVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI  218
              ++    ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  219  SLPFKLMLFVLVDGWQLLLGSLAQSF  244
            SLPFKL++FVLVDGW L+LG L  S+
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

389) fliP in NC_013892


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (457),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 83/201 (42%), Positives = 141/201 (71%), Gaps = 10/201 (4%)

Query  75   LGFIPAALLMMTSFTRIIIVLGLLRNALGTPSAPPNQIMIGLALFMTFFIMSPV---FDK  131
            L+ +P  ++M T+F ++ +V++LLRNALG    PPN  + GLAL +T+FIM+PV    + 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  132  VYQDAYLPFSEDKISLEAALDKGA-QPLRQFMLRQTRQTDLALFARLADQ---DAF-ETA  186
              Q+    +S+D  +L   +D+ A  P R+F+ R+T   ++++F  + ++   + + ++ 
Sbjct  77   RLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSV  134

Query  187  DSVPIRVLVPAFITSELKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFK  246
             + ++ +L+PAF  S+L+ AF+IG+ LF+PF+ IDL+V+++L+A+GMMMV+P T+SLPFK
Sbjct  135  KPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  247  LMLFVLVDGWQLLLGSLAQSF  267
            L++FVLVDGW L+LG L  S+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

390) fliP in NC_010468


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  125 bits (456),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 144/206 (70%), Gaps = 8/206 (3%)

Query  46   QVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMR  105
            Q++ L+ ++++LP +V+M T F ++ +V+SLLR+ALG+QQ PPN  + G+AL LT+++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  106  PIWLNIYDH-AVVPFENDRITLTDALSTAA-TPLKRFMLAQTDKKAMAQIMTIGGAK---  160
            P+ L++  +     + ND  +L++ +   A  P + F+  +TD   ++ +  I   K   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  161  ---GNAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLI  217
               ++   + L I++PA+ LS+L+ AF+IG+++++PF+ IDLIV+++L+AMGMMM+SP+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  218  VSLPFKLMLFVLIDGWSLTIGTLTTS  243
            +SLPFKL++FVL+DGWSL +G L  S
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGS  214

391) fliP in NC_015663


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (454),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 88/207 (43%), Positives = 145/207 (71%), Gaps = 6/207 (2%)

Query  51   QTLVLLTSLTFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMS  110
            Q + LL  L+ LP +++M T+F ++ +V++LLRNALG    PPN  + GLAL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  111  PV-FDKVYQEAYLPFSQDKIGLDTALDKGA-QPLREFMLRQTRESDLALYARLANQP-PL  167
            PV +D   +     +S+D  +L   +D+ A  P R+F+ R+T   +++++  + ++  P 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  168  AGPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPAT  224
               ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  225  ISLPFKLMLFVLVDGWQLLLGSLAQSF  251
            +SLPFKL++FVLVDGW L+LG L  S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

392) SerAS12_3042 in NC_015566


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (454),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 88/209 (43%), Positives = 145/209 (70%), Gaps = 10/209 (4%)

Query  39   QTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMS  98
            Q + LL  LS LP +++M T+F ++ +V++LLRNALG    PPN  + GLAL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  99   PV---FDKVYQDAYLPFSQDKISLDAALDKGS-QPLREFMLRQTRETDLALYARLANQP-  153
            PV    +   Q+    +S+D  +L   +D+ +  P R+F+ R+T   +++++  + ++  
Sbjct  69   PVGLDVQARLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  154  PLAGPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPP  210
            P    ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  211  ATISLPFKLMLFVLVDGWQLLLGSLAQSF  239
             T+SLPFKL++FVLVDGW L+LG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

393) SerAS13_3044 in NC_017573


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (454),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 88/209 (43%), Positives = 145/209 (70%), Gaps = 10/209 (4%)

Query  39   QTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMS  98
            Q + LL  LS LP +++M T+F ++ +V++LLRNALG    PPN  + GLAL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  99   PV---FDKVYQDAYLPFSQDKISLDAALDKGS-QPLREFMLRQTRETDLALYARLANQP-  153
            PV    +   Q+    +S+D  +L   +D+ +  P R+F+ R+T   +++++  + ++  
Sbjct  69   PVGLDVQARLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  154  PLAGPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPP  210
            P    ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  211  ATISLPFKLMLFVLVDGWQLLLGSLAQSF  239
             T+SLPFKL++FVLVDGW L+LG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

394) SerAS9_3041 in NC_015567


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (454),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 88/209 (43%), Positives = 145/209 (70%), Gaps = 10/209 (4%)

Query  39   QTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMS  98
            Q + LL  LS LP +++M T+F ++ +V++LLRNALG    PPN  + GLAL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  99   PV---FDKVYQDAYLPFSQDKISLDAALDKGS-QPLREFMLRQTRETDLALYARLANQP-  153
            PV    +   Q+    +S+D  +L   +D+ +  P R+F+ R+T   +++++  + ++  
Sbjct  69   PVGLDVQARLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  154  PLAGPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPP  210
            P    ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  211  ATISLPFKLMLFVLVDGWQLLLGSLAQSF  239
             T+SLPFKL++FVLVDGW L+LG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

395) fliP1 in NC_017644


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (454),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 144/206 (70%), Gaps = 8/206 (3%)

Query  46   QVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTLLVMR  105
            Q++ L+ ++++LP +V+M T F ++ +V+SLLR+ALG+QQ PPN  + G+AL LT+++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  106  PIWLNIYDH-AVVPFENDQITLTDALSTAA-TPLKRFMLAQTDKKAMAQIMTIGGAK---  160
            P+ L++  +     + ND  +L++ +   A  P + F+  +TD   ++ +  I   K   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  161  ---GNAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLI  217
               ++   + L I++PA+ LS+L+ AF+IG+++++PF+ IDLIV+++L+AMGMMM+SP+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  218  VSLPFKLMLFVLIDGWSLTIGTLTTS  243
            +SLPFKL++FVL+DGWSL +G L  S
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGS  214

396) D781_2730 in NC_020064


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (455),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 84/208 (41%), Positives = 145/208 (70%), Gaps = 8/208 (3%)

Query  60   QTLVLLTSLTFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLTLFLTFFIMS  119
            Q + LL  L+ LP +++M T+F ++ +V++LLRNALG    PPN  + GL+L LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  120  PV---FDKVYQDAYLPFSQDKIALDVAMEKGAQPLREFMLRQTRETDLALYARLAHQP-P  175
            PV    +   Q+  L+   + +A ++  +++  P R+F+ R+T   +++++  + ++  P
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQID-QNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  176  LAGPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPA  232
                ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P 
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  233  TISLPFKLMLFVLVDGWQLLLGSLAQSF  260
            T+SLPFKL++FVLVDGW L+LG L  S+
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

397) fliP in NC_021591


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 88/209 (43%), Positives = 145/209 (70%), Gaps = 10/209 (4%)

Query  39   QTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMS  98
            Q + LL  LS LP +++M T+F ++ +V++LLRNALG    PPN  + GLAL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  99   PV---FDKVYQDAYLPFSQDKISLDAALDKGS-QPLREFMLRQTRETDLALYARLANQP-  153
            PV    +   Q+    +S+D  +L   +D+ +  P R+F+ R+T   +++++  + ++  
Sbjct  69   PVGLDVQARLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  154  PLAGPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPP  210
            P    ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  211  ATISLPFKLMLFVLVDGWQLLLGSLAQSF  239
             T+SLPFKL++FVLVDGW L+LG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

398) fliP in NC_021659


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 88/209 (43%), Positives = 145/209 (70%), Gaps = 10/209 (4%)

Query  39   QTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMS  98
            Q + LL  LS LP +++M T+F ++ +V++LLRNALG    PPN  + GLAL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  99   PV---FDKVYQDAYLPFSQDKISLDAALDKGS-QPLREFMLRQTRETDLALYARLANQP-  153
            PV    +   Q+    +S+D  +L   +D+ +  P R+F+ R+T   +++++  + ++  
Sbjct  69   PVGLDVQARLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  154  PLAGPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPP  210
            P    ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  211  ATISLPFKLMLFVLVDGWQLLLGSLAQSF  239
             T+SLPFKL++FVLVDGW L+LG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

399) fliP in NC_022000


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 86/209 (42%), Positives = 149/209 (72%), Gaps = 12/209 (5%)

Query  55   TLIFITALGFIPAVLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAP  114
            +L+F+  L+ +P +++M T+F ++ +V++LLRNALG    PPN  + GLAL +T+FIMAP
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  115  V---FDKIYQDAYLPFSEDKITFEQALDNGS-QPLRQFMMQQTRETDLALFARLADAP-A  169
            V    +   Q+    +S+D  ++ + +D+ +  P R+F+ ++T   ++++F  + +   +
Sbjct  70   VGLDVQARLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  170  FETRDSV---PMRILVPAYITSELKTAFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPA  226
               RDSV   ++ IL+PA+  S+L+ AF+IG+++F+PF+ IDL+V+++L+A+GMMMV+P 
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  227  TVSLPFKLMLFVLVDGWQLILGSLAQSFF  255
            T+SLPFKL++FVLVDGW L+LG L  S++
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

400) fliP in NC_010554


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 86/209 (42%), Positives = 149/209 (72%), Gaps = 12/209 (5%)

Query  55   TLIFITALGFIPAVLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAP  114
            +L+F+  L+ +P +++M T+F ++ +V++LLRNALG    PPN  + GLAL +T+FIMAP
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  115  V---FDKIYQDAYLPFSEDKITFEQALDNGS-QPLRQFMMQQTRETDLALFARLADAP-A  169
            V    +   Q+    +S+D  ++ + +D+ +  P R+F+ ++T   ++++F  + +   +
Sbjct  70   VGLDVQARLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  170  FETRDSV---PMRILVPAYITSELKTAFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPA  226
               RDSV   ++ IL+PA+  S+L+ AF+IG+++F+PF+ IDL+V+++L+A+GMMMV+P 
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  227  TVSLPFKLMLFVLVDGWQLILGSLAQSFF  255
            T+SLPFKL++FVLVDGW L+LG L  S++
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

401) fliP in NC_021741


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 86/208 (42%), Positives = 145/208 (70%), Gaps = 8/208 (3%)

Query  56   QTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMS  115
            Q + LL  LS LP +++M T+F ++ +V++LLRNALG    PPN  + GLAL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  116  PV---FDKVYQDAYLPFSQDKISLDIALDKGSQPLREFMLRQTRETDLALYAKLANQP-P  171
            PV    +   Q+  L+   + ++ +I  +++  P R+F+ R+T   +++++  + ++  P
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQID-QNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  172  LAGPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPA  228
                ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P 
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  229  TISLPFKLMLFVLVDGWQLLLGSLAQSF  256
            T+SLPFKL++FVLVDGW L+LG L  S+
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

402) fliP2 in NC_017660


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 143/206 (70%), Gaps = 8/206 (3%)

Query  46   QVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMR  105
            Q++ L+ ++++LP +V+M T F ++ +V+SLLR+ALG+QQ PPN  + G+AL LT+++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  106  PIWLNIYDH-AVVPFENDQITLTDALSTAA-TPLKRFMLAQTDKKAMAQIMTIGGAK---  160
            P+ L++  +     + ND  +L++ +   A  P + F+  +TD   ++ +  I   K   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  161  ---GHAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLI  217
               +    + L I++PA+ LS+L+ AF+IG+++++PF+ IDLIV+++L+AMGMMM+SP+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  218  VSLPFKLMLFVLIDGWSLTIGTLTTS  243
            +SLPFKL++FVL+DGWSL +G L  S
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGS  214

403) EKO11_3667 in NC_016902


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 143/206 (70%), Gaps = 8/206 (3%)

Query  46   QVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMR  105
            Q++ L+ ++++LP +V+M T F ++ +V+SLLR+ALG+QQ PPN  + G+AL LT+++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  106  PIWLNIYDH-AVVPFENDQITLTDALSTAA-TPLKRFMLAQTDKKAMAQIMTIGGAK---  160
            P+ L++  +     + ND  +L++ +   A  P + F+  +TD   ++ +  I   K   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  161  ---GHAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLI  217
               +    + L I++PA+ LS+L+ AF+IG+++++PF+ IDLIV+++L+AMGMMM+SP+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  218  VSLPFKLMLFVLIDGWSLTIGTLTTS  243
            +SLPFKL++FVL+DGWSL +G L  S
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGS  214

404) fliP in NC_022364


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 143/206 (70%), Gaps = 8/206 (3%)

Query  46   QVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMR  105
            Q++ L+ ++++LP +V+M T F ++ +V+SLLR+ALG+QQ PPN  + G+AL LT+++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  106  PIWLNIYDH-AVVPFENDQITLTDALSTAA-TPLKRFMLAQTDKKAMAQIMTIGGAK---  160
            P+ L++  +     + ND  +L++ +   A  P + F+  +TD   ++ +  I   K   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  161  ---GHAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLI  217
               +    + L I++PA+ LS+L+ AF+IG+++++PF+ IDLIV+++L+AMGMMM+SP+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  218  VSLPFKLMLFVLIDGWSLTIGTLTTS  243
            +SLPFKL++FVL+DGWSL +G L  S
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGS  214

405) lfiP in NC_013364


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 143/206 (70%), Gaps = 8/206 (3%)

Query  46   QVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMR  105
            Q++ L+ ++++LP +V+M T F ++ +V+SLLR+ALG+QQ PPN  + G+AL LT+++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  106  PIWLNIYDH-AVVPFENDQITLTDALSTAA-TPLKRFMLAQTDKKAMAQIMTIGGAK---  160
            P+ L++  +     + ND  +L++ +   A  P + F+  +TD   ++ +  I   K   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  161  ---GHAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLI  217
               +    + L I++PA+ LS+L+ AF+IG+++++PF+ IDLIV+++L+AMGMMM+SP+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  218  VSLPFKLMLFVLIDGWSLTIGTLTTS  243
            +SLPFKL++FVL+DGWSL +G L  S
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGS  214

406) fliP in NC_013361


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 143/206 (70%), Gaps = 8/206 (3%)

Query  46   QVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMR  105
            Q++ L+ ++++LP +V+M T F ++ +V+SLLR+ALG+QQ PPN  + G+AL LT+++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  106  PIWLNIYDH-AVVPFENDQITLTDALSTAA-TPLKRFMLAQTDKKAMAQIMTIGGAK---  160
            P+ L++  +     + ND  +L++ +   A  P + F+  +TD   ++ +  I   K   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  161  ---GHAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLI  217
               +    + L I++PA+ LS+L+ AF+IG+++++PF+ IDLIV+++L+AMGMMM+SP+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  218  VSLPFKLMLFVLIDGWSLTIGTLTTS  243
            +SLPFKL++FVL+DGWSL +G L  S
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGS  214

407) lfiP in NC_017635


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 143/206 (70%), Gaps = 8/206 (3%)

Query  46   QVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMR  105
            Q++ L+ ++++LP +V+M T F ++ +V+SLLR+ALG+QQ PPN  + G+AL LT+++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  106  PIWLNIYDH-AVVPFENDQITLTDALSTAA-TPLKRFMLAQTDKKAMAQIMTIGGAK---  160
            P+ L++  +     + ND  +L++ +   A  P + F+  +TD   ++ +  I   K   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  161  ---GHAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLI  217
               +    + L I++PA+ LS+L+ AF+IG+++++PF+ IDLIV+++L+AMGMMM+SP+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  218  VSLPFKLMLFVLIDGWSLTIGTLTTS  243
            +SLPFKL++FVL+DGWSL +G L  S
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGS  214

408) fliP2 in NC_017664


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 143/206 (70%), Gaps = 8/206 (3%)

Query  46   QVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMR  105
            Q++ L+ ++++LP +V+M T F ++ +V+SLLR+ALG+QQ PPN  + G+AL LT+++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  106  PIWLNIYDH-AVVPFENDQITLTDALSTAA-TPLKRFMLAQTDKKAMAQIMTIGGAK---  160
            P+ L++  +     + ND  +L++ +   A  P + F+  +TD   ++ +  I   K   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  161  ---GHAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLI  217
               +    + L I++PA+ LS+L+ AF+IG+++++PF+ IDLIV+++L+AMGMMM+SP+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  218  VSLPFKLMLFVLIDGWSLTIGTLTTS  243
            +SLPFKL++FVL+DGWSL +G L  S
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGS  214

409) ST548_p6298 in NC_020181


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  124 bits (453),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 87/207 (43%), Positives = 145/207 (71%), Gaps = 6/207 (2%)

Query  51   QTLVLLTSLTFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLTLFLTFFIMS  110
            Q + LL  L+ LP +++M T+F ++ +V++LLRNALG    PPN  + GL+L LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  111  PV-FDKVYQEAYLPFSQDKIGLDTALDKGA-QPLREFMLRQTRESDLALYARLANQP-PL  167
            PV +D   +     +S+D  +L   +D+ A  P R+F+ R+T   +++++  + ++  P 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  168  AGPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPAT  224
               ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  225  ISLPFKLMLFVLVDGWQLLLGSLAQSF  251
            +SLPFKL++FVLVDGW L+LG L  S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

410) Pat9b_2399 in NC_014837


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  123 bits (449),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 85/209 (41%), Positives = 145/209 (70%), Gaps = 14/209 (6%)

Query  43   TLVFITSLTFIPAVLLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLVGLALFLTFFIMAP  102
            +L+F+  L+ +P +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIMAP
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  103  T----FDKIYSDAYLPFSQDKISMDVAIDKGA-QPLREFMLRQTREADLALFARLANT--  155
                   ++ ++    +S+D  ++   ID+ A  P R+F+ R+T   ++++F  + +   
Sbjct  70   VGLDVQARLQNEE---LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  156  PPI--EGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPP  213
            P    ++  + ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  214  ATISLPFKLMLFVLVDGWQLLVGSLAQSF  242
             T+SLPFKL++FVLVDGW L++G L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

411) fliP in NC_014562


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  123 bits (449),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 84/208 (41%), Positives = 144/208 (70%), Gaps = 12/208 (5%)

Query  43   TLVFITALTFIPAVLLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMAP  102
            +L+F+  L+ +P +++M T+F ++ +VF+LLRNALG    PPN  + GL+L LT+FIMAP
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  103  ---TFDKIYQDAYLPFSQDKISMDVAIDKGA-QPLREFMLRQTREADLALFARLANTA-P  157
                 +   Q+    +S+D  ++   ID+ A  P R+F+ R+T   ++++F  + +   P
Sbjct  70   VGLDVQARLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  158  IAGPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPA  214
                ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P 
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  215  SIALPFKLMLFVLVDGWQLLVGSLAQSF  242
            +++LPFKL++FVLVDGW L++G L  S+
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

412) fliP in NC_020211


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  123 bits (451),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 84/208 (41%), Positives = 145/208 (70%), Gaps = 8/208 (3%)

Query  51   QTLVLLTSLTFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMS  110
            Q + LL  L+ LP +++M T+F ++ +V++LLRNALG    PPN  + GLAL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  111  PV---FDKVYQDAYLPFSQDKIGLEVALDKGAQPLREFMLRQTRETDLALYARLANQP-P  166
            PV    +   Q+  L+   + ++ ++  +++  P R+F+ R+T   +++++  + ++  P
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQID-QNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  167  LAGPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPA  223
                ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P 
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  224  TISLPFKLMLFVLVDGWQLLLGSLAQSF  251
            T+SLPFKL++FVLVDGW L+LG L  S+
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

413) spaP in NC_019670


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 86/197 (44%), Positives = 148/197 (76%), Gaps = 11/197 (5%)

Query  23   GTCYIKFSIVFVIVRNALGLQQVPSnmalnaialmlaiFVMTPVMKQGYGYYKEEQVAFT  82
            GT ++K+S+VF ++RNALG+QQVP+N+A+ ++AL+L+IF+M+PV  +  +  ++E+++  
Sbjct  27   GTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS-N  85

Query  83   DIESVVN-FAENGLGGYKDYLRKYTDPELALFFERAQAVQSESDIVLPAD--EELTP-SL  138
            DI ++ + + +N+L  Y+D+L++ TD E   FF+  + VQ+      P    + + P SL
Sbjct  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFN--DIVQNKW----PERYRDSVKPDSL  139

Query  139  FSLLPAYALSEIKSAFKIGFYLYLPFVIVDLVISSILLALGMMMMSPVIISVPIKLVLFV  198
            + L+PA++LS+++ AFKIG+ L+LPFV +DL++S+ILLA+GMMM+SP+ +S+P+KL++FV
Sbjct  140  LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFV  199

Query  199  ALDGWALLSTGLVKQYL  215
             +DGW+L+   LV  YL
Sbjct  200  LVDGWSLVLGQLVGSYL  216

414) fliP in NC_009832


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  122 bits (447),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 88/209 (43%), Positives = 144/209 (69%), Gaps = 10/209 (4%)

Query  72   QTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMS  131
            Q + LL  LS LP +++M T+F ++ +V++LLRNALG    PPN  + GLAL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  132  PV---FDKVYQDAYLPFSQDKISLDVAMDKGS-QPLREFMLRQTRETDLALYAKLANLP-  186
            PV    +   Q+    +S+D  +L   +D+ +  P R+F+ R+T   +++++  + +   
Sbjct  69   PVGLDVQARLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  187  PLAGPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPP  243
            P    ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  244  ATISLPFKLMLFVLVDGWQLLLGSLAQSF  272
             T+SLPFKL++FVLVDGW L+LG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

415) fliP in NC_007963


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 77/191 (41%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  66   TCFTRIIIVLSLLRTAIGTQSTPPNQVLLGLALFMTFFIMSPV-LD---RVHEQAWVPFS  121
            T F ++ +V+SLLR A+G Q  PPN  + GLAL +T+FIM+PV LD   R++++    +S
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEE---LS  84

Query  122  EERISLEQALEQGS-QPFREFMFGQTRETDLALFARMADAD----EMQGPEDVPMRLLIP  176
            ++  +L + ++Q +  P+R+F+  +T   ++++F  + +        ++    ++ +L+P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  177  AFLTSELKTAFQIGFSIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGW  236
            AF  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+SLPFKL++FVLVDGW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  237  QLLIGSLAESF  247
             L++G L  S+
Sbjct  205  SLVLGQLVGSY  215

416) fliP in NC_014500


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 82/202 (41%), Positives = 139/202 (69%), Gaps = 12/202 (5%)

Query  64   LSFIPAVLLMMTCFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPV----LN  119
            LS +P +++M T F ++ +V+SLLRNALG    PPN  + GL+L LT+F+M+PV      
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  120  RIYDEAYRPFSEDKISMEVAIEKGS-QPLREFMLRQTREADLALFTRLAQI----PSLQG  174
            R+ +E    +S+D  ++   I++ +  P R+F+ R+T   ++++F  + Q        ++
Sbjct  77   RLQNEE---LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDS  133

Query  175  PEAVPMRVLVPAYVTSELKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATISLPF  234
              + ++ +L+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+SLPF
Sbjct  134  VKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF  193

Query  235  KLMLFVLVDGWQLLLGSLAQSF  256
            KL++FVLVDGW L+LG L  S+
Sbjct  194  KLLVFVLVDGWSLVLGQLVGSY  215

417) Dd586_1528 in NC_013592


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  122 bits (446),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 85/209 (41%), Positives = 144/209 (69%), Gaps = 14/209 (6%)

Query  57   TLIFITALSFIPAVLLMMTCFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSP  116
            +L+F+  LS +P +++M T F ++ +V+SLLRNALG    PPN  + GL+L LT+F+M+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  117  V----LNRIYDEAYRPFSEDKISMEVAIDKGS-KPLREFMLRQTREADLALFTRLAQI--  169
            V      R+ +E    +S+D  ++   ID+ +  P R+F+ R+T   ++++F  + Q   
Sbjct  70   VGLDVQARLQNEE---LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  170  --PSLQGPEAVPMRVLVPAYVTSELKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPP  227
                 ++  + ++ +L+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  228  ATISLPFKLMLFVLVDGWQLLLGSLAQSF  256
             T+SLPFKL++FVLVDGW L+LG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

418) fliP in NC_011147


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  122 bits (447),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 140/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLCAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P   F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

419) fliP in NC_006511


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  122 bits (447),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 140/199 (71%), Gaps = 6/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GLAL LT+FIM+PV   +  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLCAFMLRQTREADLALFARLANSG-PLQGPEAV--  165
                + +S++  ++ + +D+ A  P   F+ R+T   ++++F  + ++  P +  ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+++++L+A+GMMMV+P T++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +FVLVDGW L++G L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

420) Dd1591_1566 in NC_012912


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  121 bits (444),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 82/202 (41%), Positives = 139/202 (69%), Gaps = 12/202 (5%)

Query  64   LSFIPAVLLMMTCFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPV----LN  119
            LS +P +++M T F ++ +V+SLLRNALG    PPN  + GL+L LT+F+M+PV      
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  120  RIYDEAYRPFSEDKISMEVAIDKGS-QPLREFMLRQTREADLALFTRLAQI----PSLQG  174
            R+ +E    +S+D  ++   ID+ +  P R+F+ R+T   ++++F  + Q        ++
Sbjct  77   RLQNEE---LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDS  133

Query  175  PEAVPMRVLVPAYVTSELKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATIALPF  234
              + ++ +L+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T++LPF
Sbjct  134  VKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF  193

Query  235  KLMLFVLVDGWQLLLGSLAQSF  256
            KL++FVLVDGW L+LG L  S+
Sbjct  194  KLLVFVLVDGWSLVLGQLVGSY  215

421) fliP in NC_007404


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  121 bits (443),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 134/192 (70%), Gaps = 10/192 (5%)

Query  69   MMTSFTRIIIVLSLLRHALGTQSSPPNQVLIGLALFLTLFVMGPTFDKIYVEA---YQPL  125
            M T+F ++ +V+SLLR+ALG Q  PPN  + GLAL LT+F+M+P    + V+A    + L
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV--GLDVQARLQNEEL  83

Query  126  AENRIQMQEALDKGA-VPLRAFMLKQTRESDLALFVKMSRSPAP----KTAADIPMRVLI  180
            +++   + + +D+ A VP R F+ ++T   ++++F  + ++  P     +    ++ +L+
Sbjct  84   SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  181  PAYITSELKTAFQIGFAVFIPFLIIDMVVASILMAMGMMMVSPAIVALPFKIILFVLVDG  240
            PA+  S+L+ AF+IG+ +F+PF+ ID++V++IL+AMGMMMVSP  ++LPFK+++FVLVDG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  241  WNLLLGSLAQSF  252
            W+L+LG L  S+
Sbjct  204  WSLVLGQLVGSY  215

422) VEA_001180 in NC_013457


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  121 bits (444),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 83/207 (41%), Positives = 147/207 (72%), Gaps = 6/207 (2%)

Query  51   QILLLMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMR  110
            Q++ L+  LS LP +++M+T+F ++ VV+++LR+ALG+QQ PPN  + G+AL LT++IM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  111  PVWSDIHEN-AFQPYDNGEITLIQAFSVAE-KPVREFMLAQT---HQSSLEQMLRIA-NE  164
            PV  D++     +   N+  +L + +      P R+F+  +T   + + ++++++    E
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  165  PLDQKVEDISFAVVLPAFVISELKTAFQIGFMLFIPFLVIDLVVASVLMAMGMMMLSPLI  224
               + V   S+ +++PAF +S+L+ AF+IG++LF+PF+ IDL+V+++L+AMGMMM+SP+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  225  VSLPFKLVVFVLVDGWAMTVGTLSASF  251
            +SLPFKL+VFVLVDGW++ +G L +S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

423) sctR in NC_010530


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  121 bits (441),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 85/208 (41%), Positives = 150/208 (73%), Gaps = 2/208 (0%)

Query  11   ILTIILTFGIAPFVALMVTSYTKLVIVFGLLRAALGLQQVPPNMVLNGIAIILTAYIMAP  70
            ++++++ +++ P++ +M T++ KL +VF+LLR ALG+QQVPPN+ + G+A++LT +IMAP
Sbjct  10   LIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  71   IGSDAFDAIKRRadanaafnvndvvtvYDAVSGPLKEFLVKHTEERNRTFFVQSAKRIWP  130
            +G D    ++    +N    + + +   +    P ++FL ++T+  + TFF +  +  WP
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQID--QNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  131  EGRADDLKSDDMMVLIPSFTLSELTRAFQIGfvvylvfvvvdlivaaillalGMSMVAPT  190
            E   D +K+D +++L+P+FTLS+L  AF+IG++++L FV +DLIV+ ILLA+GM MV+P 
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  191  TISVPFKLLLFVMLEGWTQLIQGLVLSY  218
            T+S+PFKLL+FV+++GW+ ++  LV SY
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

424) Tmar_0992 in NC_014831


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  120 bits (440),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 83/194 (43%), Positives = 136/194 (71%), Gaps = 12/194 (6%)

Query  39   IMMTGFTRIVVALSFLRSALGTQQAPPNQVLVGLALFLTVFVMAPVWQQVYQDAWVPYRD  98
            +M T+F ++ V +S+LR+ALG QQ PPN  + GLAL LT+F+MAPV  +V  +A++   +
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDV--QARLQ-NE  81

Query  99   GQIGQVEAL-----QRAQQPVREFMFRYTRERDLALFLELSGRG-PVESRDQVPT---YV  149
                ++ AL     Q A  P R+F+ R T   ++++F ++     P   RD V      +
Sbjct  82   ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLI  141

Query  150  LIPAFAISELKTAFQIGFILYVPFLVIDMVVASTLMSMGMLMVPPMLVSLPFKILLFVLV  209
            L+PAF++S+L+ AF+IG++L++PF+ ID++V++ L++MGM+MV+PM +SLPFK+L+FVLV
Sbjct  142  LMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLV  201

Query  210  DGWNLVVRSLLASF  223
            DGW+LV+  L++S+
Sbjct  202  DGWSLVLGQLVGSY  215

425) fliP in NC_008044


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  120 bits (440),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 91/216 (43%), Positives = 139/216 (65%), Gaps = 15/216 (6%)

Query  40   ARTIQLILLITVLSVAPGLLVMLTCFPFLITVLSILRQAIGLQQAPPNMLMISLAMFLTY  99
              + QLI L+ +LSV P L+VM T F  L  V+S+LR+A+G+QQ PPN+ + +LA+ LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  100  FVMEPVFTEAWETGIAPLIDEEL-EVVPALERAVE-----PFRVFMANR--LDPDTYYA-  150
            F+M PV  +      A L +EEL + + AL + ++     P+R F+     ++  T++  
Sbjct  65   FIMAPVGLDV----QARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  151  -IADLRPGTEGSDPSPESPLSVLIPSFMLSEITRAFEIGFLVFLPFLVIDLVTAAILMSM  209
             + + +P        P+S L +L+P+F LS++  AF IG+L+FLPF+ IDL+ + IL++M
Sbjct  121  IVQNKWPERYRDSVKPDS-LLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAM  179

Query  210  GMMMVPPALVSLPFKLAFFVVADGWSLIASALVRSY  245
            GMMMV+P  +SLPFKL  FV+ DGWSL+ + LV SY
Sbjct  180  GMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

426) fliP in NC_015662


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  120 bits (438),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 77/192 (41%), Positives = 132/192 (69%), Gaps = 8/192 (4%)

Query  61   MMTSFTRIIIVFSLLRNALGTPYSPPNQVLVGLSLFLTFFIMSPV---LDKIYHTAYIPF  117
            M T+F ++ +VFSLLRNALG    PPN  + GL+L LT+FIM+PV   ++   +   ++ 
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85

Query  118  QKENISLEIALKRSIIPIHNFMKRQTKSSDLLLFFDLAKI----PYVKKKSLIPMRILLP  173
            +   ++ +I  + +++P ++F++R+T   ++ +F D+ +      Y       ++ IL+P
Sbjct  86   DIGALAHQID-QNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  174  AYMISELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVSPSTISLPFKLILFVLADGW  233
            A+ +S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMVSP T+SLPFKL++FVL DGW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  234  RLLIMSLSQSFL  245
             L++  L  S+L
Sbjct  205  SLVLGQLVGSYL  216

427) fliP in NC_007925


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  120 bits (437),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 105/219 (48%), Positives = 151/219 (69%), Gaps = 22/219 (10%)

Query  47   ERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNSVILALALFLTA  106
            + + QLIALL +LS+ P +++M T+F ++ VV+SLLR ALG    PPN  I +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  107  FVMGPV-------LQKS-YDDGIKPLIANQITVEEALQRAVVPLRGFMQKNVREKDLKLF  158
            F+M+PV       LQ+    ++I +L A+QI      Q A+VP R+F+Q+N    ++ +F
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGAL-AHQID-----QNALVPYRDFLQRNTDIEQVTFF  118

Query  159  MDLSNEPIPA------TPDDLSLRILVPAFMISELKRAFEigfllflpfliidlVVASVL  212
             D+ ++  P        PD  SL IL+PAF +S+L+ AF IG+LLFLPF+ IDL+V+++L
Sbjct  119  NDIVQNKWPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNIL  176

Query  213  MSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY  251
            ++MGMMM++P+ +SLPFKL+ FVLVDGWSLV G LV SY
Sbjct  177  LAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

428) fliP in NC_005085


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  120 bits (437),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 94/205 (46%), Positives = 153/205 (75%), Gaps = 8/205 (3%)

Query  49   LLFMTALTFIPAMMLMMTAFTRIVIVLSLLRQALGTTQSPPNQVIVGLALFLTLFVMGPT  108
            LLFM  L+ +P +++M TAF ++ +V+SLLR+ALG  Q PPN  I GLAL LT+F+M+P 
Sbjct  13   LLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  109  FDQVYAK-AWVPFSDDKISFNQALDEGS-KPMKAFMLRQTREKDLAFFIEISQSPKPQS-  165
              +V A+     +S+D  ++ + +D+ +  P + F+ R+T   +++FF +I Q+  P+  
Sbjct  71   GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERY  130

Query  166  KEEV---SMKTLIPAFAVSELKTAfqigfmifipfmiiDLVVASILMAMGMMMVSPVTIS  222
            ++ V   S+  L+PAF++S+L+ AF+IG+++F+PF+ IDL+V++IL+AMGMMMVSP+T+S
Sbjct  131  RDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLS  190

Query  223  LPFKMMLFVLVDGWTLLMGSLVQSF  247
            LPFK+++FVLVDGW+L++G LV S+
Sbjct  191  LPFKLLVFVLVDGWSLVLGQLVGSY  215

429) Cabther_B0538 in NC_016025


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  118 bits (432),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 92/205 (45%), Positives = 143/205 (70%), Gaps = 13/205 (6%)

Query  52   PFALIMMTSFVKISVVLSILRNALGTQQVPPNQVITGISLILTIFIMAPVA---EKMLEE  108
            P+ ++M T+F+K+SVV+S+LRNALG QQVPPN  I G++L+LTIFIMAPV+   +  L++
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  109  AGLSDATAPVFTEMRADTLFKALDKGKEPLRAFLERNAHEADRRLFLGLAQRLAQKNGKD  168
              LS+  +++  ++  ++L         P R FL+RN++  +  +F ++ Q   +   + 
Sbjct  81   EELSNDIGALAHQIDQNAL--------VPYRDFLQRNTDIEQVTFFNDIVQ--NKWPERY  130

Query  169  PNAITVRDFRVVVPAFVTSQLTEAFQIGFLLFIPFLVIDMLVSNILQAMGMFMLSPTMIS  228
             +++    + +++PAF  SQL EAF+IG+LLF+PF+ ID++VSNIL AMGM M+SP  +S
Sbjct  131  RDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLS  190

Query  229  LPfklllfvlvkGWVTLIQNLVLSY  253
            LPFKLL+FVLV GW  ++ +LV SY
Sbjct  191  LPFKLLVFVLVDGWSLVLGQLVGSY  215

430) S70_18345 in NC_017731


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  118 bits (432),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 76/179 (43%), Positives = 126/179 (71%), Gaps = 6/179 (3%)

Query  62   MMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVA-DQAYREAYQPFSE  120
            M T+F ++ +V++LLRNALG    PPN  + GLAL LT+F+M+PV+ D   R   + +S+
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85

Query  121  DKISLETALERGT-APFRTFMLGQTRESDLALFARIAKV---GEIQEA-KDVPMRILVPA  175
            D  +L   +++ +  P+R F+  +T   ++++F  I +       +++ K  ++ IL+PA
Sbjct  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145

Query  176  FITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGW  234
            F  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+SLPFKL++FVLVDGW
Sbjct  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

431) fliP in NC_007406


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  118 bits (431),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 95/214 (45%), Positives = 149/214 (70%), Gaps = 12/214 (5%)

Query  45   ERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNSVIIALAMFLTA  104
            + + QLIALL +LS+ P +++M T+F ++ VV+SLLR ALG    PPN  I +LA+ LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  105  FVMGP---TLQKSYDEGIKPLVANETTVEEALQRAS-VPLRGFMQKNVREQDLKLFMDLS  160
            F+M+P    +Q   ++    L  +  ++ + +++ + VP R+F+Q+N   +++ +F D+ 
Sbjct  65   FIMAPVGLDVQARLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  161  GEPPP-----ATPADLSLRILMPAFMISELKRAFEigfllflpfliidlVVASVLMSMGM  215
             +  P     +  +D SL ILMPAF +S+L+ AF IG+LLFLPF+ IDL+V+++L++MGM
Sbjct  123  QNKWPERYRDSVKPD-SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGM  181

Query  216  MMLPPVVVSLPFKLIFFVLVDGWALVAGSLVQSY  249
            MM++P+ +SLPFKL+ FVLVDGW+LV G LV SY
Sbjct  182  MMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

432) fliP in NC_009715


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  118 bits (431),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 88/200 (44%), Positives = 150/200 (75%), Gaps = 6/200 (3%)

Query  51   ILTLAPSLVFMMTSFLRLIIVFSFLRQAMGTQQVPPSTVIISLAMVLTFFIMEPIGRQSY  110
            +L++ P LV M T+FL+L +VFS+LR+A+G QQVPP+  I +LA+VLT+FIM P+G +  
Sbjct  16   MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ  75

Query  111  DEGVKPYLAEQIGY--EEMFERSVKPFKNFMVKNTREKDLALFFRIRNLQNP----SNID  164
                +  L+++IG   +++ + ++ P+++F+ +NT   ++++F  I + + P     ++ 
Sbjct  76   ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK  135

Query  165  DIPLSIAMSAFMISELKTAFEIAFLLYLPFLVIDmvvssvlmamgmmmlppvmISLPFKL  224
              +L I M+AF +S+L+ AF I++LL+LPF+ ID++VS++L+AMGMMM++P+ +SLPFKL
Sbjct  136  PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  225  LIFVLVDGWNLLVGNLVKSF  244
            L+FVLVDGW+L++G+LV S+
Sbjct  196  LVFVLVDGWSLVLGQLVGSY  215

433) Tlie_0100 in NC_016148


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  118 bits (432),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 137/194 (71%), Gaps = 14/194 (7%)

Query  71   MVTSFTRILVVLGFLRSAIGVQQLPPNQVIVTLAIFLTLFIMRPVWEEVYKEAYIPLQEG  130
            M T+F ++ VV+++LR+A+GVQQ+PPN  I  LA+ LT+FIM PV  +V  +A   LQ+ 
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDV--QA--RLQNE  81

Query  131  QIT------TQEAMDRTLKPVREFMLSQTKEKELSLMISLSDLERPNT-PEDVPT---LV  180
            +++      +++  + +L P R+F+  +T   ++++   + +  +P+   + V     L+
Sbjct  82   ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLI  141

Query  181  LLPAFMLSELKTAFQMGVVLFVPFLVIDMIVSSVLMSMGMIMLPPMLVSLPFKVLLFVLA  240
            L+PAF LS+L+ AF++G++LF+PF+ ID+IVS++L++MGM+M++PM +SLPFK+L+FVL 
Sbjct  142  LMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLV  201

Query  241  DGWDLVIVSLVKSF  254
            DGW LV+  LV S+
Sbjct  202  DGWSLVLGQLVGSY  215

434) fliP in NC_007964


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 103/218 (48%), Positives = 150/218 (69%), Gaps = 20/218 (9%)

Query  45   ERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNSVIIALAMFLTA  104
            + + QLIALL +LS+ P +++M T+F ++ VV+SLLR ALG    PPN  I +LA+ LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  105  FVMGPT-------LQKS-YDDGIKPLVANQITVEEALQRASVPLRGFMQKNVREQDLKLF  156
            F+M+P        LQ+    ++I +L A+QI      Q A VP R+F+Q+N   +++ +F
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGAL-AHQID-----QNALVPYRDFLQRNTDIEQVTFF  118

Query  157  IDLSGEPPP-----ATPADLSLRILMPAFMISELKRAFEigfllflpfliidlVVASVLM  211
             D+  +  P     +  +D SL ILMPAF +S+L+ AF IG+LLFLPF+ IDL+V+++L+
Sbjct  119  NDIVQNKWPERYRDSVKPD-SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILL  177

Query  212  SMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY  249
            +MGMMM++P+ +SLPFKL+ FVLVDGWSLV G LV SY
Sbjct  178  AMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

435) fliP in NC_007954


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  117 bits (427),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 85/203 (42%), Positives = 143/203 (71%), Gaps = 12/203 (5%)

Query  36   LTLIPVFVIAMTAFTRIIIVLSLVRQALGLQQTPPNSVLIALSLFLTIFAMS----GVFE  91
            L+++P++V+  TAF ++ +V+SL+R+ALG+QQ PPN  + +L+L LTIF M+    +V  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  92   QINNKALLPYANGSIELSAAVS-NGIEPLKGFMLSQTD--EVHFIRVLDMAK--VPVPQS  146
            +++N  L   +N+   L+  +  N++ P ++F+  +TD  +V F+  +   K      +S
Sbjct  77   RLQNEEL---SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDS  133

Query  147  SADVSLTHLVPAFMLSELTLAFKMAFLIFLPFLMIDLLVASCLMALGMIMVPPITVSLPL  206
                SL  L+PAF LS+L  AFK+++L+FLPF+ IDL+V++ L+A+GM+MV+P+T+SLP+
Sbjct  134  VKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF  193

Query  207  KIMVFVLIDGWSLITGSLVQSFM  229
            K++VFVL+DGWSL+ G LV S++
Sbjct  194  KLLVFVLVDGWSLVLGQLVGSYL  216

436) PSPPH_2535 in NC_005773


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  117 bits (426),  Expect = 7e-28, Method: Compositional matrix adjust.
 Identities = 82/202 (41%), Positives = 142/202 (71%), Gaps = 6/202 (2%)

Query  18   IGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTPLIGDMYR  77
            ++++PL VV  T+F+K+SVV+ L+RNALGVQQ PPN+ +YG+AL+L++++ +P+  D+  
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  78   EVQGRDLSLQN---VQQLEELGSALCPTLQAHLSKFANESERGFFVQATETIWSPEarad  134
             +Q  +LS +     +Q+++  +AL P  +  L + ++  +  FF +  +  W+   R  
Sbjct  77   RLQNEELSNDIGALAHQIDQ--NALVPY-RDFLQRNTDIEQVTFFNDIVQNKWPERYRDS  133

Query  135  lrdddlvvlIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSMVSPTLISIPL  194
            ++ D L++L+PAF  S+L  AF IG+LL++PF+ +DL+VSN+L+AMGM MVSP  +S+P+
Sbjct  134  VKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF  193

Query  195  KIFLFVALSGWSRLMHGLILSY  216
            K+++FV + GWS ++  L+ SY
Sbjct  194  KLLVFVLVDGWSLVLGQLVGSY  215

437) fliP in NC_009485


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 100/216 (47%), Positives = 148/216 (69%), Gaps = 16/216 (7%)

Query  28   ERAVQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNAVIIALAMFLTA  87
            + + QLIALL +LS+ P +++M T+F ++ VV+SLLR A+G    PPN  I +LA+ LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  88   FVMGPV---LQKSYDDGVRPLIENQIGV--EDALQRASVPLRGFMQKNVREKDLKLFMDL  142
            F+M+PV   +Q   ++     + N+IG   ++  Q A VP R+F+Q+N    ++ +F D+
Sbjct  65   FIMAPVGLDVQARLQNEE---LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDI  121

Query  143  SGEAPPA------TPDELSLRILVPAFMISELKRAFEigfllflpfliidlVVASVLMSM  196
              +  P        PD  SL IL+PAF +S+L+ AF IG+LLFLPF+ IDL+V+++L++M
Sbjct  122  VQNKWPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAM  179

Query  197  GMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY  232
            GMMM++P+ +SLPFKL+ FVLVDGWSLV G LV SY
Sbjct  180  GMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

438) fliP in NC_009445


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  116 bits (424),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 97/215 (46%), Positives = 149/215 (70%), Gaps = 14/215 (6%)

Query  20   ERAVQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTAMGTATAPPNSVIIALAMFLTA  79
            + + QLIALL +LS+ P ++VM T+F ++ VV+SLLR A+G    PPN  I +LA+ LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  80   FVMGPV---LQKSYDDGVRPLIENQITVEDALQRAS-VPLRGFMQKNVREKDLKLFMDLS  135
            F+M+PV   +Q   ++    L ++  ++ + +++ + VP R+F+Q+N    ++ +F D+ 
Sbjct  65   FIMAPVGLDVQARLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  136  GEAPPA------TPDELSLRILVPAFMISELKRAFEigfllflpfliidlVVASVLMSMG  189
             +  P        PD  SL IL+PAF +S+L+ AF IG+LLFLPF+ IDL+V+++L++MG
Sbjct  123  QNKWPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  190  MMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY  224
            MMM++P+ +SLPFKL+ FVLVDGWSLV G LV SY
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

439) Psest_1732 in NC_019936


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  116 bits (424),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 85/203 (42%), Positives = 149/203 (74%), Gaps = 14/203 (6%)

Query  63   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQiligltlfltlfiMAPV-FD---  118
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + GL+L LT+FIMAPV +D   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  119  RINQDALQPYLSEQIPA--QEAISRAEVPLKNFMLAQTRESDLELFVRL--SRRTDI--A  172
            R++++ L    S++I A  ++    A VP ++F+  +T   ++ +F  +  +++ +    
Sbjct  77   RLQNEEL----SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  173  SPEAAPMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLP  232
            S  + ++ IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  233  FKIMLFVLVDGWGLIIGTLAGSF  255
            FK+++FVLVDGW+L++G L GS+
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSY  215

440) fliP in NC_003911


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  116 bits (424),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 138/213 (65%), Gaps = 7/213 (3%)

Query  40   ARTIQLILLITVLSLAPGLAIMITCFPFLVTVLAILRQGIGLQQSPPNMLIVSLALFLTY  99
              + QLI L+ +LS+ P L +M T F  L  V+++LR+++G+QQ PPN+ I +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  100  FVMEPVF--TEAWTTGiapmmaeelalepalekaiapFKAFMAARLDAD--TFFA--MAN  153
            F+M PV    +A+              +   ++A+ P++ F+    D +  TFF   + N
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  154  LRPDGAALTATPEAPLSVLVPSFMLSEIARAFQIGFLVFLPFLIIDLVVAAVLMSMGMMM  213
             +P+    +  P++ L +L+P+F LS++  AF+IG+L+FLPF+ IDL+V+ +L++MGMMM
Sbjct  125  KWPERYRDSVKPDS-LLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  214  VPPATVSLPFKLAFFVLADGWSLIASALVRSYM  246
            V+P T+SLPFKL  FVL DGWSL+ + LV SY+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

441) PSEBR_a2427 in NC_015379


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 83/204 (41%), Positives = 146/204 (72%), Gaps = 6/204 (2%)

Query  34   IQSPVSIVALLTALSFLPFLVISLTTFTRNIVVLSLARQALGLQQTPPNIVLIVLSMFLT  93
            ++S+  ++ALL  LS LP+LV+  T+F +  VV+SL R+ALG+QQ PPNI +  L++ LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  94   LFAMAPTLEKAYDAGIKPFLANKVGL--DGAALQGWVPIRDFMIRQTHEEDLRLIYELAK  151
            +F MAP          +  L+N +G   +    ++ VP RDF+ R+T+ E++ ++ ++ +
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  152  DPLPQA-PEGLSPVKL---VPAFMLSELKLAFQIGFMIFLPFLIIDLVVASILMSLGMIM  207
            +  P+   +++ P  L   +PAF LS+L+ AF+IG+++FLPF+ IDL+V++IL+++GM+M
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  208  VPPITISLPLKIMLFLLIDGWGLI  231
            V+P+T+SLP+K+++F+L+DGW+L+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLV  207

442) fliP in NC_018028


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  116 bits (422),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 85/203 (42%), Positives = 149/203 (74%), Gaps = 14/203 (6%)

Query  63   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQiligltlfltlfiMAPV-FE---  118
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + GL+L LT+FIMAPV ++   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  119  RINQEALQPYLSEQIPA--QEAIARAEVPLKGFMLAQTRESDLELFVRL--SRRTDI--A  172
            R+++E L    S++I A  ++    A VP ++F+  +T   ++ +F  +  +++ +    
Sbjct  77   RLQNEEL----SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  173  SPEAAPMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLP  232
            S  + ++ IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  233  FKIMLFVLVDGWGLIIGTLAGSF  255
            FK+++FVLVDGW+L++G L GS+
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSY  215

443) Thein_0183 in NC_015681


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  116 bits (425),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 83/190 (44%), Positives = 135/190 (72%), Gaps = 6/190 (3%)

Query  63   MVTSFTRLVIVFSLLRHALGTQQTPPNQVlialalfltffiMKPVFSQAYNQAISPYLAG  122
            M T+F +L +VFSLLR+ALG QQ PPN  + +LAL LT+FIM PV  +   +  +  L+ 
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85

Query  123  EIGD--QEFFRDVVKPFREFMFKNTRKKDLALMIRLSGAPKPEN-KEDV---STLTLIPA  176
            +IG   +++ ++ + P+R+F+ +NT   ++++   +     PE  ++ V   S L L+PA
Sbjct  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145

Query  177  FMISELRTAFEIGFLLYIPFLIIDMVVASVLLSMGMMMLPPVMISLPIKVLLFVLVDGWH  236
            F +S+L  AF IG+LL++PF+ ID++V+++LL+MGMMM++P+ +SLP+K+L+FVLVDGW 
Sbjct  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205

Query  237  LLVGSLVKSF  246
            L++G LV S+
Sbjct  206  LVLGQLVGSY  215

444) fliP in NC_017082


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  116 bits (425),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 103/219 (48%), Positives = 150/219 (69%), Gaps = 22/219 (10%)

Query  45   ERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNSVIIALAMFLTF  104
            + + QLIALL +LS+ P +++M T+F ++ VV+SLLR A+G    PPN  I +LA+ LT+
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  105  FVMGPV-------LQKS-YDEGIRPLVANQISVEDALQRASVPLRGFMQKNVREKDLKLF  156
            F+M+PV       LQ+    ++I +L A+QI      Q A VP R+F+Q+N    ++ +F
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGAL-AHQID-----QNALVPYRDFLQRNTDIEQVTFF  118

Query  157  LDLSREPPPA------TPDDLALRILVPAFMISELKRAFEigfllflpfliidlVVASVL  210
             D+ ++  P        PD L   IL+PAF +S+L+ AF IG+LLFLPF+ IDL+V+++L
Sbjct  119  NDIVQNKWPERYRDSVKPDSLL--ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNIL  176

Query  211  MSMGMMMLPPATISLPFKLIFFVLVDGWSLVAGSLVQSY  249
            ++MGMMM++P T+SLPFKL+ FVLVDGWSLV G LV SY
Sbjct  177  LAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

445) fliP in NC_008740


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  116 bits (425),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 153/208 (74%), Gaps = 9/208 (4%)

Query  52   QILALMTALTFLPAMLMMMTSFTRIIVVFAILRQALGLQATPSNQILLGLALFLSIFIMK  111
            Q++AL+  L+ LP +++M T+F ++ VVF++LR+ALG+Q  P+N  + GLAL L+IFIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  112  PV-LEEANRVGLQPYLQEEVTSL-EAVELAS-QPFRKFMLEQTREDDLALFMRIADV---  165
            PV L+   R+  +  L +++ +L + ++  +  P+R F+  +T  +++++F  I +    
Sbjct  69   PVGLDVQARLQNEE-LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  166  -QY-ETPQDVSFWILMPAFVTSELKTAfqigfilfipfliiDMVVASVLMAMGMMMLSPI  223
             +Y ++ +  S+ ILMPAF  S+L+ AF+IG++LF+PF+ ID++V+++L+AMGMMM+SP+
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  224  IISLPFKIMLFVLVDGWALIMGTLAASY  251
             +SLPFK+++FVLVDGW+L++G L +SY
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

446) fliP in NC_017067


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  116 bits (425),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 153/208 (74%), Gaps = 9/208 (4%)

Query  52   QILALMTALTFLPAMLMMMTSFTRIIVVFAILRQALGLQATPSNQILLGLALFLSIFIMK  111
            Q++AL+  L+ LP +++M T+F ++ VVF++LR+ALG+Q  P+N  + GLAL L+IFIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  112  PV-LEEANRVGLQPYLQEEVTSL-EAVELAS-QPFRKFMLEQTREDDLALFMRIADV---  165
            PV L+   R+  +  L +++ +L + ++  +  P+R F+  +T  +++++F  I +    
Sbjct  69   PVGLDVQARLQNEE-LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  166  -QY-ETPQDVSFWILMPAFVTSELKTAfqigfilfipfliiDMVVASVLMAMGMMMLSPI  223
             +Y ++ +  S+ ILMPAF  S+L+ AF+IG++LF+PF+ ID++V+++L+AMGMMM+SP+
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  224  IISLPFKIMLFVLVDGWALIMGTLAASY  251
             +SLPFK+++FVLVDGW+L++G L +SY
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

447) fliP in NC_016745


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  116 bits (424),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 82/193 (43%), Positives = 135/193 (70%), Gaps = 18/193 (9%)

Query  62   SFTRIIVVLAVLRQALGLQQSPPNRVLIGIALSLTLLIMRPV---LQDIYHHAFVPYDNG  118
            +F ++ VV+++LR+ALG+QQ PPN  + G+AL LT++IM PV   +Q   ++  ++ D G
Sbjct  29   AFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIG  88

Query  119  TIGFEQALMTAKAPLQTFMLAQTRETDLEQIL---NIAQE------PTDLSPEEVPFEVL  169
            +++ +Q    A  P + F+    R+TD+EQ+    +I Q+         + P+ +   +L
Sbjct  89   ALA-HQIDQNALVPYRDFL---QRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL--IL  142

Query  170  IPAFVLSELKTAFQIGFMLFIPFLVIDLVVASVLMAMGMMMLSPLVISLPFKLMLFVLVD  229
            +PAF LS+L+ AF+IG++LF+PF+ IDL+V+++L+AMGMMM+SP+ +SLPFKL++FVLVD
Sbjct  143  MPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVD  202

Query  230  GWSMTVGTLARSF  242
            GWS+ +G L  S+
Sbjct  203  GWSLVLGQLVGSY  215

448) fliP in NC_004463


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  115 bits (421),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 100/216 (47%), Positives = 150/216 (70%), Gaps = 16/216 (7%)

Query  44   ERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNSVIIALAMFLTF  103
            + + QLIALL +LS+ P +++M T+F ++ VV+SLLR A+G    PPN  I +LA+ LT+
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  104  FVMGPV---LQKSYDEGIRPLVANQIGV--EDALQRASVPLRGFMQKNVREKDLKLFLDL  158
            F+M+PV   +Q   ++     ++N+IG   ++  Q A VP R+F+Q+N    ++ +F D+
Sbjct  65   FIMAPVGLDVQARLQNEE---LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDI  121

Query  159  SGEPPPA------TPDELALRILIPAFMISELKRAFEigfllflpfliidlVVASVLMSM  212
              +  P        PD  +L IL+PAF +S+L+ AF IG+LLFLPF+ IDL+V+++L++M
Sbjct  122  VQNKWPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAM  179

Query  213  GMMMLPPATISLPFKLIFFVLVDGWSLVAGSLVQSY  248
            GMMM++P T+SLPFKL+ FVLVDGWSLV G LV SY
Sbjct  180  GMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

449) fliP in NC_020453


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 96/215 (45%), Positives = 149/215 (70%), Gaps = 14/215 (6%)

Query  44   ERAVQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNSVIIALAMFLTA  103
            + + QLIALL +LS+ P +++M T+F ++ VV+SLLR A+G    PPN  I +LA+ LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  104  FVMGPV---LQKSYDDGVRPLIENQIGVEDALQRAS-VPLRGFMQKNVREKDLKLFMDLS  159
            F+M+PV   +Q   ++    L ++  ++ + +++ + VP R+F+Q+N    ++ +F D+ 
Sbjct  65   FIMAPVGLDVQARLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  160  GEAPPA------TPDELSLRILVPAFMISELKRAFEigfllflpfliidlVVASVLMSMG  213
             +  P        PD  SL IL+PAF +S+L+ AF IG+LLFLPF+ IDL+V+++L++MG
Sbjct  123  QNKWPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  214  MMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY  248
            MMM++P+ +SLPFKL+ FVLVDGWSLV G LV SY
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

450) fliP in NC_009434


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  115 bits (421),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 85/201 (43%), Positives = 143/201 (72%), Gaps = 10/201 (4%)

Query  4    LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQiligltlfltlfiMAPVFDRINQ  63
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + GL+L LT+FIMAPV   ++ 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  64   DALQPYLSEQIPA--QEAIARAEVPLKNFMLAQTRESDLELFVRLSQRT------DIASP  115
               +  LS++I A  ++    A VP ++F+  +T   ++ +F  + Q        D   P
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  116  EAAPMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK  175
            ++  + IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLPFK
Sbjct  137  DS--LLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFK  194

Query  176  IMLFVLVDGWGLIIGTLAGSF  196
            +++FVLVDGW+L++G L GS+
Sbjct  195  LLVFVLVDGWSLVLGQLVGSY  215

451) fliP in NC_015740


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  115 bits (420),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 86/203 (43%), Positives = 148/203 (73%), Gaps = 14/203 (6%)

Query  63   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQiligltlfltlfiMAPV-FD---  118
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + GL+L LT+FIMAPV +D   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  119  RINQDALQPYLSEQIPA--QEAIARAEVPLKNFMLAQTRESDLELFVRLSQ--RTDI--A  172
            R++++ L    S++I A  ++    A VP ++F+  +T   ++ +F  + Q  + +    
Sbjct  77   RLQNEEL----SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  173  SPEAAPMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLP  232
            S  + ++ IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  233  FKIMLFVLVDGWGLIIGTLAGSF  255
            FK+++FVLVDGW+L++G L GS+
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSY  215

452) fliP-2 in NC_017532


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  115 bits (420),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 86/203 (43%), Positives = 148/203 (73%), Gaps = 14/203 (6%)

Query  63   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQiligltlfltlfiMAPV-FD---  118
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + GL+L LT+FIMAPV +D   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  119  RINQDALQPYLSEQIPA--QEAIARAEVPLKNFMLAQTRESDLELFVRLSQ--RTDI--A  172
            R++++ L    S++I A  ++    A VP ++F+  +T   ++ +F  + Q  + +    
Sbjct  77   RLQNEEL----SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  173  SPEAAPMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLP  232
            S  + ++ IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  233  FKIMLFVLVDGWGLIIGTLAGSF  255
            FK+++FVLVDGW+L++G L GS+
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSY  215

453) SAR116_0822 in NC_014010


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  115 bits (421),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 88/210 (42%), Positives = 151/210 (72%), Gaps = 12/210 (5%)

Query  58   QILALMTALTVLPSLVLGMTSFTRIIIVLSILRQAMGTQQTPPNQVLVAIALFLTFFIMA  117
            Q++AL+  L+VLP LV+  T+F ++ +V+S+LR+A+G QQ PPN  + ++AL LT+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  118  PT----FTQLNDMALSPYMEGTMPMETALSDGTNIM-KDFLVQNTRVTDLVMFTEMAGDT  172
            P      ++L++  LS   ++  ++   + + + +  +DFL +NT + ++  F ++  + 
Sbjct  69   PVGLDVQARLQNEELS---NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNK  125

Query  173  ---TYEDP-KDVPLTVLLPAFITSELKTAFQIGFLLFLPFLVIDMVIAsilmslgmmmls  228
                Y D+ K  +L +L+PAF  S+L+ AF+IG+LLFLPF+ ID+++++IL+++GMMM+S
Sbjct  126  WPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVS  185

Query  229  pmlVALPFKLLLFVLVDGWAMTVGSLVATY  258
            PM ++LPFKLL+FVLVDGW++ +G LV++Y
Sbjct  186  PMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

454) HP15_2312 in NC_017506


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  115 bits (420),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 86/208 (42%), Positives = 152/208 (74%), Gaps = 9/208 (4%)

Query  57   QILALMTALTFLPAMLMMMTSFTRIIVVFAILRQAIGLQSTPSNQILLGLALFLSIFIMK  116
            Q++AL+  L+ LP +++M T+F ++ VVF++LR+A+G+Q  P+N  + GLAL L+IFIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  117  PV-LEEANRVALQPYMQEEVTSL-EAVELAS-QPFRKFMLEQTRESDLALFMRISDT---  170
            PV L+   R+  +  + +++ +L + ++  +  P+R F+  +T   ++++F  I +    
Sbjct  69   PVGLDVQARLQNEE-LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  171  -QY-ETPQDVSFWILMPAFVTSELKTAfqigfilfipfliiDMVVASVLMAMGMMMLSPI  228
             +Y ++ +  S+ ILMPAF  S+L+ AF+IG++LF+PF+ ID++V+++L+AMGMMM+SP+
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  229  IISLPFKIMLFVLVDGWALIMGTLAASY  256
             +SLPFK+++FVLVDGW+L++G L +SY
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

455) PT7_0779 in NC_015458


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 77/188 (41%), Positives = 134/188 (72%), Gaps = 6/188 (3%)

Query  74   TGFTRIIIVLGLLRNAMGTGASPPNSILIGLALFLTFFAMSPVFDQIYAD-AYQPLSNGV  132
            T+F ++ +V++LLRNA+G    PPN  + GLAL LT+F M+PV  ++ A    + LSN++
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  133  IAFEEALER-GIKPLHSFMLHQTREADLTMFANMANV--AEL--QTAEEVPLRVLVPAFM  187
             A+ + +++ ++ P + F+ ++T   ++T F ++ +   +E   ++    +L +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  188  ASELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTISLPFKLMLFVLADGWHLL  247
             S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P+T+SLPFKL++FVL DGW L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  248  LGSLARSF  255
            LG L  S+
Sbjct  208  LGQLVGSY  215

456) fliP in NC_017249


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 102/217 (48%), Positives = 149/217 (69%), Gaps = 18/217 (8%)

Query  22   ERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNSVIIALAMFLTF  81
            + + QLIALL +LS+ P +++M T+F ++ VV+SLLR A+G    PPN  I +LA+ LT+
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  82   FVMGPVLQKSYDEGIRPLVANQLGVE-DAL-----QRASVPLRGFMQKNVREKDLKLFLD  135
            F+M+PV   + D   R L  ++L+ + +AL     Q A VP R+F+Q+N    ++ +F D
Sbjct  65   FIMAPV---GLDVQAR-LQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  136  LSGEPPPA------TPDDLALRILVPAFMISELKRAFEigfllflpfliidlVVASVLMS  189
            +  +  P        PD L   IL+PAF +S+L+ AF IG+LLFLPF+ IDL+V+++L++
Sbjct  121  IVQNKWPERYRDSVKPDSLL--ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLA  178

Query  190  MGMMMLPPATISLPFKLIFFVLVDGWSLVAGSLVQSY  226
            MGMMM++P T+SLPFKL+ FVLVDGWSLV G LV SY
Sbjct  179  MGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

457) fliP in NC_005296


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 100/216 (47%), Positives = 145/216 (68%), Gaps = 16/216 (7%)

Query  46   ERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNAVIIALALFLTA  105
            + + QLIALL +LS+ P ++VM T+F ++ VV+SLLR ALG    PPN  I +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  106  FVMGP---TLQKSYDEGIKPLIANEIGVDDAMVRASG--PLRIFMQKNVREKDLKLFLDL  160
            F+M+P    +Q   ++     ++N+IG     +  ++  P R F+Q+N    ++ +F D+
Sbjct  65   FIMAPVGLDVQARLQNEE---LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDI  121

Query  161  SGEPPPA------TPEDLSLRILMPAFLISELKRAFEigfllflpfliidlVVASILMSM  214
              +  P        P+  SL ILMPAF +S+L+ AF IG+LLFLPF+ IDL+V++IL++M
Sbjct  122  VQNKWPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAM  179

Query  215  GMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY  250
            GMMM++P+ +SLPFKL+ FVLVDGWSLV G LV SY
Sbjct  180  GMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

458) fliP in NC_011004


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 100/216 (47%), Positives = 145/216 (68%), Gaps = 16/216 (7%)

Query  46   ERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNAVIIALALFLTA  105
            + + QLIALL +LS+ P ++VM T+F ++ VV+SLLR ALG    PPN  I +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  106  FVMGP---TLQKSYDEGIKPLIANEIGVDDAMVRASG--PLRIFMQKNVREKDLKLFLDL  160
            F+M+P    +Q   ++     ++N+IG     +  ++  P R F+Q+N    ++ +F D+
Sbjct  65   FIMAPVGLDVQARLQNEE---LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDI  121

Query  161  SGEPPPA------TPEDLSLRILMPAFLISELKRAFEigfllflpfliidlVVASILMSM  214
              +  P        P+  SL ILMPAF +S+L+ AF IG+LLFLPF+ IDL+V++IL++M
Sbjct  122  VQNKWPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAM  179

Query  215  GMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY  250
            GMMM++P+ +SLPFKL+ FVLVDGWSLV G LV SY
Sbjct  180  GMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

459) Mnod_5540 in NC_011894


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  115 bits (419),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 91/211 (44%), Positives = 145/211 (69%), Gaps = 6/211 (2%)

Query  45   ERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNAVIVSLALFLTA  104
            + + QL+AL+ +L++ P ++VM+T+F ++ VV+S+LR+ALG Q  PPN  I +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  105  FVMAPTARDA-YRAGIEPLVAGQIQQSQAFERAA-APFKAFMLRTVREKDLQLFLDLAKA  162
            F+MAP + D   R   E L  +    ++ +++ A  P++ F+ R     ++ +F D+ + 
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  163  PRP----ATPEAVGLEILTPAFMISELRRAfeigfllfipfliidlVVASILMSVGMMML  218
             +P     +  + +L IL PAF +S+L  AF IG+LLF+PF+ IDL+V++IL+++GMMM+
Sbjct  125  KWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  219  PPATVALPFKLIFFVLVDGWTLVAGSLVQSY  249
            +P T++LPFKL+ FVLVDGW+LV G LV SY
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

460) fliP in NC_004917


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  115 bits (419),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 83/195 (43%), Positives = 142/195 (73%), Gaps = 6/195 (3%)

Query  76   PSLVLVMTSFTRIVIVFAFLRTALGTQQSPPTQVLVSLALILTFFIMEPVATK-SYEVGI  134
            P LV++ T+F ++ +VF++LR ALG QQ PP   + +LAL+LT+FIM PV+      +  
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  135  KPYAEKKISYDEAFER-AIVPFKDFMIKNTREKDLALFFRIRQLENPQ----SVNDVPLT  189
               ++   +  + +++ A+VP++DF+ +NT   ++++F  I Q   P+    SV+  +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  190  VLLPAFMISELKTAFWIGFLLYLPFLVIDMVISSvlmamgmmmlppvmISLPFKILVFIL  249
            +L+PAF +S+L+ AF IG+LL+LPF+ ID+++S++L+AMGMMM++P+ +SLPFK+LVF+L
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  250  VDGWNLLIGNLVQGF  264
            VDGW+L++G+LV ++
Sbjct  201  VDGWSLVLGQLVGSY  215

461) fliP in NC_007645


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  114 bits (416),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 83/207 (41%), Positives = 152/207 (74%), Gaps = 5/207 (2%)

Query  50   QILALMTALTFIPAFLMMMTSFTRIIIVFSILRQALGLQQAPSNQILVGIALFLTFFIMG  109
            Q++AL+  L+ +P +++M T+F ++ +VFS+LR+ALG+QQ P+N  + G+AL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  110  PTFKQANEVALQPYLAEQLTA--QEAVAKASEPFREFMLRQTRESDLGLFIRLAGDE--N  165
            P   + +    +  L++++ A  ++   +A  P+R+F+ R+T   ++ +F  +  +   +
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  166  KYANP-EEVPFTILMPAFVTSELKTAfqigflifipfliiDMVVASVLMAMGMMMLSPII  224
            +Y ++    ++ ILMPAF  S+L+ AF+IG+L+F+PF+ ID++V+++L+AMGMMM+SP+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  225  ISLPFKIMLFVLVDGWALIMGTLAASF  251
            +SLPFK+++FVLVDGW+L++G L +S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

462) fliP in NC_015554


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  114 bits (415),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 89/205 (44%), Positives = 149/205 (73%), Gaps = 8/205 (3%)

Query  49   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILVGVSLFLSMFIMAPV  108
            LF+++ L+L+   ++M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L L++FIMAPV
Sbjct  14   LFMLSVLPLL---VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  109  FEEINERALQPYLSEQMTSL-DAIEQAK-GPMRAFMLSQTRVKDLETFVRIAGDE--GKY  164
              +++ R  +  LS+++ +L + I+Q    P R F+  +T + ++  F  I  +    +Y
Sbjct  71   GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERY  130

Query  165  ADT-DEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVS  223
             D+    +L IL+PAF  S+L+ AF+IG++LF+PF+ IDL+V++IL+AMGMMM+SPM +S
Sbjct  131  RDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLS  190

Query  224  LPFKLMLFVLVDGWNLIFGTLATSF  248
            LPFKL++FVLVDGW+L++G L  S+
Sbjct  191  LPFKLLVFVLVDGWSLVLGQLVGSY  215

463) fliP in NC_011978


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  114 bits (415),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 83/200 (42%), Positives = 135/200 (68%), Gaps = 13/200 (6%)

Query  56   PSILVLFTSFTRIIVVFSLFRNALGTRQTPPNQVMIGLALFLTFLIMQPVWNDIYNNAIT  115
            P ++V+ T+F ++ VVFSL+RNALG +Q PPN  + GLAL LT++IM PV  D+      
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  116  PYLEREIGYQEMFQRINNRI----REFMIKELKNHHNEDNVFM--LAQNANLEITRVEEA  169
              L  +IG   + ++I++      R+F+ +   N + E+  F   + QN   E  R    
Sbjct  81   EELSNDIG--ALAHQIDQNALVPYRDFLQR---NTDIEQVTFFNDIVQNKWPERYRDSVK  135

Query  170  PNSVLI--PAFVLGELEIAFKMGVVLYVPFIVIDMIVASILLSMGMIMIPPVFVSLPFKI  227
            P+S+LI  PAF L++L+ AFK+G++L++PF+ ID+IV++ILL+MGM+M++P+ +SLPFK+
Sbjct  136  PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  228  LIFVMANGWDLLVEGLIKSF  247
            L+FV+ +GW L++  L+ S+
Sbjct  196  LVFVLVDGWSLVLGQLVGSY  215

464) fliP in NC_007778


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 102/219 (47%), Positives = 150/219 (69%), Gaps = 22/219 (10%)

Query  46   ERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNMVIIALALFLTA  105
            + + QLIALL +LS+ P +++M T+F ++ VV+SLLR ALG    PPN+ I +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  106  FVMGPT-------LQKS-YDDGIKPLIANEMSVEDALVRASGPLRIFMQKNVREKDLKLF  157
            F+M+P        LQ+    ++I +L A+++  ++ALV    P R F+Q+N    ++ +F
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGAL-AHQID-QNALV----PYRDFLQRNTDIEQVTFF  118

Query  158  LDLSGEPPPA------TPEDLSLRILMPAFMISELKRAFEigfllflpfliidlVVASVL  211
             D+  +  P        P+  SL ILMPAF +S+L+ AF IG+LLFLPF+ IDL+V+++L
Sbjct  119  NDIVQNKWPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNIL  176

Query  212  MSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY  250
            ++MGMMM++P+ +SLPFKL+ FVLVDGWSLV G LV SY
Sbjct  177  LAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

465) N175_05385 in NC_022223


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  114 bits (415),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 89/209 (43%), Positives = 153/209 (74%), Gaps = 11/209 (5%)

Query  78   QILALMTMLGFLPAMVILMTSFTRIVIVMSILRQAMGLQQTPSNQVIIGIAIFLTFFIMS  137
            Q++AL+ ML+ LP +V++ T+F ++ +V S+LR+A+G+QQ P+N  I G+A+ LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  138  PVINAINEQAVQPYLNEQMTA--RQAFDTAQEPLKAFMLKQTRVKDLETFVEISGS----  191
            PV   ++ +  +  L++++ A  +Q  + A  P + F+ ++T + ++  F +I  +    
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  192  ---DATNPEEVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmlsp  248
               D+ +P+  S+ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V+++L+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  249  mIVSLPFKLMLFVLVDGWNLILSTLAGSF  277
            M +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

466) M446_5157 in NC_010511


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  114 bits (416),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 89/211 (43%), Positives = 147/211 (70%), Gaps = 6/211 (2%)

Query  77   ERALQLVALITVLALAPSVLVMATAFTRIVVVLSILRSALGTQTAPPNAVIVSLALFLTA  136
            + + QL+AL+ +L++ P ++VM+TAF ++ VV+S+LR+ALG Q  PPN  I +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  137  FVMAPTAREA-YRTGIEPLVAGQISQSQAFERASQ-PFKAFMLRSVREKDLRLFLDLSNA  194
            F+MAP + +   R   E L  +  + ++ +++ +  P++ F+ R+    ++ +F D+ + 
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  195  PRP----ATPEAVGLEILTPAFMISELRRAfeigfllfipfliidlVVASVLMSVGMMML  250
             +P     +  + +L IL PAF +S+L  AF IG+LLF+PF+ IDL+V+++L+++GMMM+
Sbjct  125  KWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  251  PPATVALPFKLIFFVLVDGWTLVAGSLVQSY  281
            +P T++LPFKL+ FVLVDGW+LV G LV SY
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

467) VAA_03446 in NC_015633


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  114 bits (415),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 89/209 (43%), Positives = 153/209 (74%), Gaps = 11/209 (5%)

Query  78   QILALMTMLGFLPAMVILMTSFTRIVIVMSILRQAMGLQQTPSNQVIIGIAIFLTFFIMS  137
            Q++AL+ ML+ LP +V++ T+F ++ +V S+LR+A+G+QQ P+N  I G+A+ LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  138  PVINAINEQAVQPYLNEQMTA--RQAFDTAQEPLKAFMLKQTRVKDLETFVEISGS----  191
            PV   ++ +  +  L++++ A  +Q  + A  P + F+ ++T + ++  F +I  +    
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  192  ---DATNPEEVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmlsp  248
               D+ +P+  S+ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V+++L+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  249  mIVSLPFKLMLFVLVDGWNLILSTLAGSF  277
            M +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

468) fliP in NC_016026


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  114 bits (416),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 85/210 (41%), Positives = 147/210 (70%), Gaps = 12/210 (5%)

Query  65   QLVALLTILSLAPSILIMMTSFTRIIVVLSFLRTAIGIQQTPPNTVMISLAIFLTFFIMA  124
            QL+ALL +LS+ P +++M T+F ++ VV+S+LR A+G+QQ PPN  + +LA+ LT+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  125  PTFQTAYQAGVVPLIEEQIDEVEAFKRTVE-----PFREFMVKHVRETDLALFAQMNQS-  178
            P    + +       EE  +++ A+ + ++     P+R+F+ ++    ++++F ++ Q+ 
Sbjct  69   PV---GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNK  125

Query  179  --EPFPSP-EAVPLQVLIPAFMISELRRAFEIGFMLFLPFVIIDMVTAsilmsmgmmmlp  235
              E +  +  + +L +L+PAF +S+L  AF IG++LFLPFV ID++ ++IL++MGMMM++
Sbjct  126  WPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVS  185

Query  236  pvmiSLPFKIVFFVLVDGWHLLAGTLVQSF  265
            P+ +SLPFK++ FVLVDGW L+ G LV S+
Sbjct  186  PMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

469) MYSTI_06240 in NC_020126


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 134/194 (70%), Gaps = 2/194 (1%)

Query  44   VLMLTSFSKIAVVLSLARSAMGTQQAPPtvvltglavvltgHIMASVMERMYDAGQLAYQ  103
            V+M T+F K++VV+SL R+A+G QQ PP + + GLA+VLT  IMA+V   +   ++L  +
Sbjct  24   VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV--GLDVQARLQNE  81

Query  104  EMETGSGTKILESAAKVAEPLRTFLVKHGSAEERARFVDLARELRPPEEADTVSETDLFV  163
            E+  + G+   +   +   P R FL ++   E+ + F D+ ++ +P    D+V    L++
Sbjct  82   ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLI  141

Query  164  VIPAFVITELKEAFQIGFLVFLPFLVLDMVIANVLLALGMQTLSPSQVSLPFKILLFVAV  223
            ++PAF +++L+EAF+IG+L+FLPF+ +D++++N+LLA+GM  +SP  +SLPFK+L+FV V
Sbjct  142  LMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLV  201

Query  224  DGWSLLARGLILGY  237
            DGWSL+   L+ +Y
Sbjct  202  DGWSLVLGQLVGSY  215

470) M892_15305 in NC_022269


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  114 bits (415),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 90/209 (44%), Positives = 153/209 (74%), Gaps = 11/209 (5%)

Query  88   QILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFVMS  147
            Q++AL+ ML+ LP +V++ T+F ++ VV S+LR+A+G+QQ P+N  I G+AL LT+F+M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  148  PVLNEINDNAIQPYLNEQVTA--RQAFDAAQVPMKAFMLKQTRIKDLETFVNMSGE----  201
            PV  +++    +  L++++ A  +Q  + A VP + F+ ++T I ++  F ++  +    
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  202  ---QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmlsp  258
               +  +P+  S+ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V+++L+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  259  mIVSLPFKLMLFVLVDGWNLILSTLAGSF  287
            M +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

471) fliP in NC_009783


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  114 bits (415),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 90/209 (44%), Positives = 153/209 (74%), Gaps = 11/209 (5%)

Query  88   QILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFVMS  147
            Q++AL+ ML+ LP +V++ T+F ++ VV S+LR+A+G+QQ P+N  I G+AL LT+F+M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  148  PVLNEINDNAIQPYLNEQVTA--RQAFDAAQVPMKAFMLKQTRIKDLETFVNMSGE----  201
            PV  +++    +  L++++ A  +Q  + A VP + F+ ++T I ++  F ++  +    
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  202  ---QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmlsp  258
               +  +P+  S+ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V+++L+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  259  mIVSLPFKLMLFVLVDGWNLILSTLAGSF  287
            M +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

472) fliP in NC_018632


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  114 bits (414),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 87/205 (43%), Positives = 149/205 (73%), Gaps = 8/205 (3%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+L+   ++M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L L++FIMAPV
Sbjct  14   LFMLSVLPLL---VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  108  FEEVNERALQPYLNEQLTSLDALEQAKG--PMRAFMLSQTRVKDLETFVRIAGDE--GKY  163
              +V+ R  +  L++++ +L    + ++  P R F+  +T + ++  F  I  +    +Y
Sbjct  71   GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERY  130

Query  164  ADT-NEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVS  222
             D+ +  +L IL+PAF  S+L+ AF+IG++LF+PF+ IDL+V++IL+AMGMMM+SPM +S
Sbjct  131  RDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLS  190

Query  223  LPFKLMLFVLVDGWNLIFGTLATSF  247
            LPFKL++FVLVDGW+L++G L  S+
Sbjct  191  LPFKLLVFVLVDGWSLVLGQLVGSY  215

473) fliP in NC_018692


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  114 bits (414),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 87/205 (43%), Positives = 149/205 (73%), Gaps = 8/205 (3%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+L+   ++M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L L++FIMAPV
Sbjct  14   LFMLSVLPLL---VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  108  FEEVNERALQPYLNEQLTSLDALEQAKG--PMRAFMLSQTRVKDLETFVRIAGDE--GKY  163
              +V+ R  +  L++++ +L    + ++  P R F+  +T + ++  F  I  +    +Y
Sbjct  71   GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERY  130

Query  164  ADT-NEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVS  222
             D+ +  +L IL+PAF  S+L+ AF+IG++LF+PF+ IDL+V++IL+AMGMMM+SPM +S
Sbjct  131  RDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLS  190

Query  223  LPFKLMLFVLVDGWNLIFGTLATSF  247
            LPFKL++FVLVDGW+L++G L  S+
Sbjct  191  LPFKLLVFVLVDGWSLVLGQLVGSY  215

474) fliP in NC_018678


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  114 bits (414),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 87/205 (43%), Positives = 149/205 (73%), Gaps = 8/205 (3%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+L+   ++M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L L++FIMAPV
Sbjct  14   LFMLSVLPLL---VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  108  FEEVNERALQPYLNEQLTSLDALEQAKG--PMRAFMLSQTRVKDLETFVRIAGDE--GKY  163
              +V+ R  +  L++++ +L    + ++  P R F+  +T + ++  F  I  +    +Y
Sbjct  71   GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERY  130

Query  164  ADT-NEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVS  222
             D+ +  +L IL+PAF  S+L+ AF+IG++LF+PF+ IDL+V++IL+AMGMMM+SPM +S
Sbjct  131  RDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLS  190

Query  223  LPFKLMLFVLVDGWNLIFGTLATSF  247
            LPFKL++FVLVDGW+L++G L  S+
Sbjct  191  LPFKLLVFVLVDGWSLVLGQLVGSY  215

475) fliP in NC_008314


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  114 bits (414),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 87/208 (42%), Positives = 139/208 (67%), Gaps = 6/208 (2%)

Query  59   QTLVLLTSLSFLPAAMLLMTGFTRIIIVLGLLRSALGTATSPPNQVLVGLSLFLTFFVMA  118
            Q + LL  LS LP  +++ T+F ++ +V++LLR+ALG    PPN  + GL+L LT+F+MA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  119  PV-FDRVYNDAYKPLSENKISleaaaakaaepl-kaFMLRQTREKDLAMFAQMAKA--PE  174
            PV +D         LS++  +L     + A    + F+ R+T   +++ F ++ +   PE
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  175  M--QGPEEVPLSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAMGMMMVPPAT  232
               ++    +L IL+PAF  S+L+ AF+IG+ +F+PF+ IDL+V+++L+AMGMMMV+P T
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  233  ISLPFKLMLFVLVDGWQLLLGSLAQSFM  260
            +SLPFKL++FVLVDGW L+LG L  S++
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

476) fliP in NC_016613


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  114 bits (414),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 89/209 (43%), Positives = 153/209 (74%), Gaps = 11/209 (5%)

Query  88   QILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFVMS  147
            Q++AL+ ML+ LP +V++ T+F ++ VV S+LR+A+G+QQ P+N  I G+AL LT+F+M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  148  PVLNEINDTAIQPYLNEQVTA--REAFDAAQVPIKAFMLKQTRIKDLETFVNMSGE----  201
            PV  +++    +  L++++ A  ++  + A VP + F+ ++T I ++  F ++  +    
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  202  ---QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmlsp  258
               +  +P+  S+ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V+++L+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  259  mIVSLPFKLMLFVLVDGWNLILSTLAGSF  287
            M +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

477) fliP in NC_007958


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (412),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 103/219 (48%), Positives = 150/219 (69%), Gaps = 22/219 (10%)

Query  47   ERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNSVIIALALFLTG  106
            + + QLIALL +LS+ P ++VM T+F ++ VV+SLLR ALG    PPN  I +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  107  FVMGPT-------LQKS-YDDGIKPLIANEMAVEDALVRASGPLRIFMQKNVREKDLKLF  158
            F+M+P        LQ+    ++I +L A+++  ++ALV    P R F+Q+N    ++ +F
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGAL-AHQID-QNALV----PYRDFLQRNTDIEQVTFF  118

Query  159  LDLSGEQPPA------TPEELSLRILMPAFMISELKRAFEigfllflpfliidlVVASVL  212
             D+  ++ P        P+  SL ILMPAF +S+L+ AF IG+LLFLPF+ IDL+V+++L
Sbjct  119  NDIVQNKWPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNIL  176

Query  213  MSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY  251
            ++MGMMM++P+ +SLPFKL+ FVLVDGWSLV G LV SY
Sbjct  177  LAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

478) Rpdx1_1458 in NC_014834


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (412),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 103/217 (48%), Positives = 150/217 (70%), Gaps = 18/217 (8%)

Query  47   ERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNAVIIALALFLTA  106
            + + QLIALL +LS+ P +++M T+F ++ VV+SLLR ALG    PPN  I +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  107  FVMGPT-------LQKA-YDDGIKPLIANEIGVDDALVRASGPMRVFMQKNVREKDLKLF  158
            F+M+P        LQ+    ++I +L A++I+ ++ALV    P R F+Q+N    ++ +F
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGAL-AHQID-QNALV----PYRDFLQRNTDIEQVTFF  118

Query  159  LDLSGEP-PPATPEDL---SLRILMPAFLISELKRAFEigfllflpfliidlVVASILMS  214
             D+  +  P    + +   SL ILMPAF +S+L+ AF IG+LLFLPF+ IDL+V++IL++
Sbjct  119  NDIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLA  178

Query  215  MGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY  251
            MGMMM++P+ +SLPFKL+ FVLVDGWSLV G LV SY
Sbjct  179  MGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

479) MU9_1792 in NC_020418


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (410),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 77/179 (44%), Positives = 124/179 (70%), Gaps = 6/179 (3%)

Query  62   MTTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPV-FDKVYEDAYRPFSE  120
            M T+F ++ +V++LLRNALG    PPN  + GLAL LT+F+M+PV +D         +S+
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85

Query  121  DKISLETALDRGT-APLRTFMLGQTRENDLALFARIAKV---GEIQEA-KDVPMRILIPA  175
            D  +L   +D+ +  P R F+  +T  +++++F  I +       +++ K  ++ IL+PA
Sbjct  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145

Query  176  FITSELKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGW  234
            F  S+L+ AF+IG+ LF+PF+ IDL+V+++L+A+GMMMV+P T+SLPFKL++FVLVDGW
Sbjct  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

480) fliP in NC_019393


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (412),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 87/205 (43%), Positives = 148/205 (73%), Gaps = 8/205 (3%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+L+   ++M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L L++FIMAPV
Sbjct  14   LFMLSVLPLL---VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  108  FEEVNERALQPYLNEQLTSLDALEQAKG--PMRAFMLSQTRVKDLETFVRIAGDE--GKY  163
              +V+ R  +  L++++ +L    + ++  P R F+  +T + ++  F  I  +    +Y
Sbjct  71   GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERY  130

Query  164  ADT-DEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVS  222
             D+    +L IL+PAF  S+L+ AF+IG++LF+PF+ IDL+V++IL+AMGMMM+SPM +S
Sbjct  131  RDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLS  190

Query  223  LPFKLMLFVLVDGWNLIFGTLATSF  247
            LPFKL++FVLVDGW+L++G L  S+
Sbjct  191  LPFKLLVFVLVDGWSLVLGQLVGSY  215

481) fliP in NC_018679


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (412),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 87/205 (43%), Positives = 148/205 (73%), Gaps = 8/205 (3%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+L+   ++M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L L++FIMAPV
Sbjct  14   LFMLSVLPLL---VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  108  FEEVNERALQPYLNEQLTSLDALEQAKG--PMRAFMLSQTRVKDLETFVRIAGDE--GKY  163
              +V+ R  +  L++++ +L    + ++  P R F+  +T + ++  F  I  +    +Y
Sbjct  71   GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERY  130

Query  164  ADT-DEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVS  222
             D+    +L IL+PAF  S+L+ AF+IG++LF+PF+ IDL+V++IL+AMGMMM+SPM +S
Sbjct  131  RDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLS  190

Query  223  LPFKLMLFVLVDGWNLIFGTLATSF  247
            LPFKL++FVLVDGW+L++G L  S+
Sbjct  191  LPFKLLVFVLVDGWSLVLGQLVGSY  215

482) MADE_1005950 in NC_011138


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (412),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 87/205 (43%), Positives = 148/205 (73%), Gaps = 8/205 (3%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+L+   ++M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L L++FIMAPV
Sbjct  14   LFMLSVLPLL---VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  108  FEEVNERALQPYLNEQLTSLDALEQAKG--PMRAFMLSQTRVKDLETFVRIAGDE--GKY  163
              +V+ R  +  L++++ +L    + ++  P R F+  +T + ++  F  I  +    +Y
Sbjct  71   GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERY  130

Query  164  ADT-DEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVS  222
             D+    +L IL+PAF  S+L+ AF+IG++LF+PF+ IDL+V++IL+AMGMMM+SPM +S
Sbjct  131  RDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLS  190

Query  223  LPFKLMLFVLVDGWNLIFGTLATSF  247
            LPFKL++FVLVDGW+L++G L  S+
Sbjct  191  LPFKLLVFVLVDGWSLVLGQLVGSY  215

483) fliP in NC_021716


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (412),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 87/205 (43%), Positives = 148/205 (73%), Gaps = 8/205 (3%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+L+   ++M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L L++FIMAPV
Sbjct  14   LFMLSVLPLL---VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  108  FEEVNERALQPYLNEQLTSLDALEQAKG--PMRAFMLSQTRVKDLETFVRIAGDE--GKY  163
              +V+ R  +  L++++ +L    + ++  P R F+  +T + ++  F  I  +    +Y
Sbjct  71   GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERY  130

Query  164  ADT-DEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVS  222
             D+    +L IL+PAF  S+L+ AF+IG++LF+PF+ IDL+V++IL+AMGMMM+SPM +S
Sbjct  131  RDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLS  190

Query  223  LPFKLMLFVLVDGWNLIFGTLATSF  247
            LPFKL++FVLVDGW+L++G L  S+
Sbjct  191  LPFKLLVFVLVDGWSLVLGQLVGSY  215

484) fliP in NC_021710


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (412),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 87/205 (43%), Positives = 148/205 (73%), Gaps = 8/205 (3%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+L+   ++M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L L++FIMAPV
Sbjct  14   LFMLSVLPLL---VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  108  FEEVNERALQPYLNEQLTSLDALEQAKG--PMRAFMLSQTRVKDLETFVRIAGDE--GKY  163
              +V+ R  +  L++++ +L    + ++  P R F+  +T + ++  F  I  +    +Y
Sbjct  71   GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERY  130

Query  164  ADT-DEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVS  222
             D+    +L IL+PAF  S+L+ AF+IG++LF+PF+ IDL+V++IL+AMGMMM+SPM +S
Sbjct  131  RDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLS  190

Query  223  LPFKLMLFVLVDGWNLIFGTLATSF  247
            LPFKL++FVLVDGW+L++G L  S+
Sbjct  191  LPFKLLVFVLVDGWSLVLGQLVGSY  215

485) fliP in NC_021717


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (412),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 87/205 (43%), Positives = 148/205 (73%), Gaps = 8/205 (3%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+L+   ++M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L L++FIMAPV
Sbjct  14   LFMLSVLPLL---VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  108  FEEVNERALQPYLNEQLTSLDALEQAKG--PMRAFMLSQTRVKDLETFVRIAGDE--GKY  163
              +V+ R  +  L++++ +L    + ++  P R F+  +T + ++  F  I  +    +Y
Sbjct  71   GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERY  130

Query  164  ADT-DEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVS  222
             D+    +L IL+PAF  S+L+ AF+IG++LF+PF+ IDL+V++IL+AMGMMM+SPM +S
Sbjct  131  RDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLS  190

Query  223  LPFKLMLFVLVDGWNLIFGTLATSF  247
            LPFKL++FVLVDGW+L++G L  S+
Sbjct  191  LPFKLLVFVLVDGWSLVLGQLVGSY  215

486) fliP in NC_021712


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (412),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 87/205 (43%), Positives = 148/205 (73%), Gaps = 8/205 (3%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+L+   ++M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L L++FIMAPV
Sbjct  14   LFMLSVLPLL---VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  108  FEEVNERALQPYLNEQLTSLDALEQAKG--PMRAFMLSQTRVKDLETFVRIAGDE--GKY  163
              +V+ R  +  L++++ +L    + ++  P R F+  +T + ++  F  I  +    +Y
Sbjct  71   GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERY  130

Query  164  ADT-DEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVS  222
             D+    +L IL+PAF  S+L+ AF+IG++LF+PF+ IDL+V++IL+AMGMMM+SPM +S
Sbjct  131  RDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLS  190

Query  223  LPFKLMLFVLVDGWNLIFGTLATSF  247
            LPFKL++FVLVDGW+L++G L  S+
Sbjct  191  LPFKLLVFVLVDGWSLVLGQLVGSY  215

487) fliP in NC_021714


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (412),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 87/205 (43%), Positives = 148/205 (73%), Gaps = 8/205 (3%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+L+   ++M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L L++FIMAPV
Sbjct  14   LFMLSVLPLL---VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  108  FEEVNERALQPYLNEQLTSLDALEQAKG--PMRAFMLSQTRVKDLETFVRIAGDE--GKY  163
              +V+ R  +  L++++ +L    + ++  P R F+  +T + ++  F  I  +    +Y
Sbjct  71   GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERY  130

Query  164  ADT-DEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVS  222
             D+    +L IL+PAF  S+L+ AF+IG++LF+PF+ IDL+V++IL+AMGMMM+SPM +S
Sbjct  131  RDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLS  190

Query  223  LPFKLMLFVLVDGWNLIFGTLATSF  247
            LPFKL++FVLVDGW+L++G L  S+
Sbjct  191  LPFKLLVFVLVDGWSLVLGQLVGSY  215

488) fliP in NC_021713


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (412),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 87/205 (43%), Positives = 148/205 (73%), Gaps = 8/205 (3%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+L+   ++M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L L++FIMAPV
Sbjct  14   LFMLSVLPLL---VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  108  FEEVNERALQPYLNEQLTSLDALEQAKG--PMRAFMLSQTRVKDLETFVRIAGDE--GKY  163
              +V+ R  +  L++++ +L    + ++  P R F+  +T + ++  F  I  +    +Y
Sbjct  71   GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERY  130

Query  164  ADT-DEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVS  222
             D+    +L IL+PAF  S+L+ AF+IG++LF+PF+ IDL+V++IL+AMGMMM+SPM +S
Sbjct  131  RDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLS  190

Query  223  LPFKLMLFVLVDGWNLIFGTLATSF  247
            LPFKL++FVLVDGW+L++G L  S+
Sbjct  191  LPFKLLVFVLVDGWSLVLGQLVGSY  215

489) fliP in NC_004459


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (411),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 89/209 (43%), Positives = 154/209 (74%), Gaps = 11/209 (5%)

Query  88   QILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIMS  147
            Q++AL+ ML+ LP +V++ T+F ++ VV S+LR+A+G+QQ P+N  I G+AL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  148  PVINEVNEQAVQPYLNEQLTA--REAFDAAQGPMKAFMLKQTRVKDLETFVNMSGE----  201
            PV  +V+ +  +  L++++ A  ++  + A  P + F+ ++T + ++  F ++  +    
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  202  ---QATNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmlsp  258
               ++ +P+  S+ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V+++L+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  259  mIVSLPFKLMLFVLVDGWNLILSTLAGSF  287
            M +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

490) VVMO6_00828 in NC_014965


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (411),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 89/209 (43%), Positives = 154/209 (74%), Gaps = 11/209 (5%)

Query  88   QILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIMS  147
            Q++AL+ ML+ LP +V++ T+F ++ VV S+LR+A+G+QQ P+N  I G+AL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  148  PVINEVNEQAVQPYLNEQLTA--REAFDAAQGPMKAFMLKQTRVKDLETFVNMSGE----  201
            PV  +V+ +  +  L++++ A  ++  + A  P + F+ ++T + ++  F ++  +    
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  202  ---QATNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmlsp  258
               ++ +P+  S+ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V+++L+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  259  mIVSLPFKLMLFVLVDGWNLILSTLAGSF  287
            M +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

491) fliP in NC_005139


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (411),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 89/209 (43%), Positives = 154/209 (74%), Gaps = 11/209 (5%)

Query  88   QILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIMS  147
            Q++AL+ ML+ LP +V++ T+F ++ VV S+LR+A+G+QQ P+N  I G+AL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  148  PVINEVNEQAVQPYLNEQLTA--REAFDAAQGPMKAFMLKQTRVKDLETFVNMSGE----  201
            PV  +V+ +  +  L++++ A  ++  + A  P + F+ ++T + ++  F ++  +    
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  202  ---QATNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmlsp  258
               ++ +P+  S+ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V+++L+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  259  mIVSLPFKLMLFVLVDGWNLILSTLAGSF  287
            M +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

492) CYCME_0921 in NC_021917


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (410),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 89/214 (42%), Positives = 152/214 (72%), Gaps = 20/214 (9%)

Query  41   QILAVMTLLTVLPSLLVMMTSFTRIIIVFSILRQAMGTPQTPSNQILLGLALFLTFFIMS  100
            Q++A++ +L+VLP L+VM T+F ++ +VFS+LR+A+G  Q P+N  + GLAL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  101  PVLEKANEEALQPYLNDQIAADI-AITKAIE-----PFRGFMLRQTRSDDLEMFARISGA  154
            PV     +  LQ   N++++ DI A++  I+     P+R+F+ R+T  +++  F  I   
Sbjct  69   PV-GLDVQARLQ---NEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  155  -------EPITDESDVPLSLLLPAFVTSELKTAFQIGFMIFVPFLIIDmvvasvlmsmgm  207
                   +++  +S   L +L+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L++MGM
Sbjct  125  KWPERYRDSVKPDS---LLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGM  181

Query  208  mmlsplIISLPFKLMLFVLVDGWSLIMETLAASF  241
            MM+SP+ +SLPFKL++FVLVDGWSL++  L +S+
Sbjct  182  MMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

493) fliP in NC_018268


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (411),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 87/210 (42%), Positives = 150/210 (72%), Gaps = 13/210 (6%)

Query  69   QILALMTALTFLPAMLMMMTSFTRIIIVFSILRQALGLQSAPSNQILLGLALFLTIFIMK  128
            Q++AL+  L+ LP +++M T+F ++ +VFS+LR+ALG+Q  P+N  + GLAL LTIFIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  129  PV-LEEANRVGLQPYLQEEMTSL--EAVEAASEPFKKFMLAQTRESDLGLFMRMAD----  181
            PV L+   R+  +  L +++ +L  +  + A  P++ F+  +T   ++ +F  + +    
Sbjct  69   PVGLDVQARLQNEE-LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  182  EQF---VSPEDVTFWVLLPAFVTSELKTAfqigfilfipfliiDMVVASVLMAMGMMMLS  238
            E++   V P+ +   +L+PAF  S+L+ AF+IG++LF+PF+ ID++V+++L+AMGMMM+S
Sbjct  128  ERYRDSVKPDSLL--ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVS  185

Query  239  PIIISLPFKIMLFVLVDGWALIMGTLAASY  268
            P+ +SLPFK+++FVLVDGW+L++G L +SY
Sbjct  186  PMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

494) Mahau_0870 in NC_015520


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (412),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 77/188 (41%), Positives = 136/188 (73%), Gaps = 6/188 (3%)

Query  75   TSFTRIIVVLSFVRSALGLQQMPPNQVIIGLALFLTFFTMAPVATQINQTALQPYMNGQI  134
            T+F ++ VV+S++R+ALG+QQ+PPN  I GLAL LT+F MAPV+ +++    +  ++ +I
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  135  EQ--QQAIDNAMVPLREFMFKETREKDLNLFVNLSGMDKPEQLSDISST----VLIPAFI  188
                +Q  +NA+VP R+F+ ++T   ++ +F ++     PE+  D        +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  189  ISELKTAFQIGFLIYVPFIVIDMVVATTLmsmgmmmippvmisLPFKVLLFIMVDGWNLV  248
            +S+L+ AF+IG+L+++PF+ ID++V+  L++MGMMM++P+ +SLPFK+L+F++VDGW+LV
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  249  VQSLITSF  256
            +  L+ S+
Sbjct  208  LGQLVGSY  215

495) fliP in NC_018177


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (411),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 147/199 (74%), Gaps = 6/199 (3%)

Query  63   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQiligltifltlfiMAPVFDQINR  122
            LS +P +V++ T+F ++ +VFS+LR+ALG+QQ P+N  + GL++ LT+FIMAPV  +++ 
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  123  DALQPYLNQQLPA--QQAIARAEVPLKNFMLAQTRESDLELFVRL--SKRTDL--QTPEA  176
               +  L++++ A  +Q    A VP ++F+  +T   ++ +F  +  +K+ +   ++  +
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  177  VPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIM  236
             +L IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L+AMGMMM+SP+ +SLPFK++
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  237  LFVLIDGWGLIIGTLASSF  255
            +FVL+DGW+L++G L +S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

496) VEA_002825 in NC_013456


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (410),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 87/207 (43%), Positives = 151/207 (73%), Gaps = 7/207 (3%)

Query  88   QILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFVMS  147
            Q++AL+ ML+ LP +V++ T+F ++ VV S+LR+A+G+QQ P+N  I G+AL LT+F+M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  148  PVLNEINDKAVQPYLNEQVTA--REAFDAAQAPMKAFMLKQTRIKDLETFVTMSGEQ---  202
            PV  +++ +  +  L++++ A  ++  + A  P + F+ ++T I ++  F  +  ++   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  203  --VENPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmlspmI  260
               ++    S+ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V+++L+AMGMMM+SPM 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  261  VSLPFKLMLFVLVDGWNLILSTLAGSF  287
            +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

497) VPBB_2057 in NC_019955


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (410),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 89/209 (43%), Positives = 153/209 (74%), Gaps = 11/209 (5%)

Query  88   QILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFVMS  147
            Q++AL+ ML+ LP +V++ T+F ++ VV S+LR+A+G+QQ P+N  I G+AL LT+F+M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  148  PVLNEINDTAIQPYLNEQVTA--REAFDAAQVPMKAFMLKQTRIKDLETFVNMSGE----  201
            PV  +++    +  L++++ A  ++  + A VP + F+ ++T I ++  F ++  +    
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  202  ---QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmlsp  258
               +  +P+  S+ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V+++L+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  259  mIVSLPFKLMLFVLVDGWNLILSTLAGSF  287
            M +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

498) M634_13595 in NC_021847


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (410),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 89/209 (43%), Positives = 153/209 (74%), Gaps = 11/209 (5%)

Query  88   QILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFVMS  147
            Q++AL+ ML+ LP +V++ T+F ++ VV S+LR+A+G+QQ P+N  I G+AL LT+F+M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  148  PVLNEINDTAIQPYLNEQVTA--REAFDAAQVPMKAFMLKQTRIKDLETFVNMSGE----  201
            PV  +++    +  L++++ A  ++  + A VP + F+ ++T I ++  F ++  +    
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  202  ---QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmlsp  258
               +  +P+  S+ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V+++L+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  259  mIVSLPFKLMLFVLVDGWNLILSTLAGSF  287
            M +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

499) fliP in NC_009802


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (413),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 83/192 (44%), Positives = 144/192 (75%), Gaps = 6/192 (3%)

Query  57   IFMMTSFLRLVIVFSFLRQAMGTQQVPPSTVLISLAMVLTFFIMEPVGQRSYDEGIKPYI  116
            + M T+FL+L +VFS+LR+A+G QQVPP+  + +LA+VLT+FIM PVG        +  +
Sbjct  24   VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEEL  83

Query  117  AEQIGY--EEMLDKSLKPFKEFMVKNTREKDLALFFRIRNLQNP----ANIEDIPLSIAM  170
            +++IG   +++ +++L P+++F+ +NT   ++++F  I + + P     ++   +L I M
Sbjct  84   SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  171  SAFMISELKTSFEIAFLLYLPFLVIDmvvssvlmamgmmmlppvmISLPFKLLIFVLVDG  230
            +AF +S+L+ +F I++LL+LPF+ ID++VS++L+AMGMMM++P+ +SLPFKLL+FVLVDG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  231  WNLLIGNLVKSF  242
            W+L++G+LV S+
Sbjct  204  WSLVLGQLVGSY  215

500) fliP in NC_010382


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (412),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 82/195 (43%), Positives = 141/195 (73%), Gaps = 6/195 (3%)

Query  33   PSILILMTSFARIVIVLSFVRTALATQQMPPNQVIVGLALFLTFFIMAPTFQEVNKEALQ  92
            P ++++ T+F ++ +V+S++R AL+ QQ+PPN  I GLAL LT+FIMAP   +V+    +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  93   PLFSEEIG-LEEAYDRASL-PFKEFMSKHTRQKDLDLFLSYNQAEKP----ASVEEIPLT  146
              +S++IG L +  D+ +L P+++F+ ++T   ++ +F    Q   P     SV   +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  147  MLVPAFALSEIKTAFQIGFMIFIPFLVIDMIVASTlmsmgmmmlppvmISLPFKILLFVL  206
            +L+PAF+LS+++ AF+IG+++F+PF+ ID+IV++ L++MGMMM++P+ +SLPFK+L+FVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  207  VDGWYLVMKSLLQSF  221
            VDGW LV+  L+ S+
Sbjct  201  VDGWSLVLGQLVGSY  215

501) fliP in NC_010530


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  113 bits (413),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 88/210 (42%), Positives = 139/210 (67%), Gaps = 10/210 (4%)

Query  72   QTLVLLTSLSFLPAAMLMMTGFTRVIIVLGLLRNALGTATSPPNQVLVGLSLFLTFFVMA  131
            Q + LL  LS LP  ++M T+F ++ +V++LLRNALG    PPN  + GL+L LT+F+MA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  132  PV----FDRVYNDAYKPLSenklsleaaaakaaeplkaFMLRQTREKDLAMFAQMAKA--  185
            PV      R+ N+     ++     +    +A  P + F+ R+T   +++ F ++ +   
Sbjct  69   PVGLDVQARLQNEELS--NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  186  PEM--QGPEEVPLSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAMGMMMVPP  243
            PE   ++    +L IL+PAF  S+L+ AF+IG+ +F+PF+ IDL+V+++L+AMGMMMV+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  244  ATISLPFKLMLFVLVDGWQLLLGSLAQSFM  273
             T+SLPFKL++FVLVDGW L+LG L  S++
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

502) BUPH_03734 in NC_018695


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  112 bits (408),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 87/204 (43%), Positives = 143/204 (71%), Gaps = 6/204 (2%)

Query  80   LLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPV-L  138
            LL MLS LP +V+M T+F ++ +V+SLLR+ALG    PPN  + GLAL LT+F+M+PV L
Sbjct  13   LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGL  72

Query  139  DKAYTDGYKPFSEGTVPMETAVSH-GLAPFKTFMLRQTRESDLALFARISHAA-PMQGPE  196
            D         +S++  ++   + + +L P++ F+ R+T   ++++F  I +   P +  +
Sbjct  73   DVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  197  DV---PLSLLVPSFVTSELKTGFQIGFTIFIPFLIIDmvvasvlmsmgmmmvsPATISLP  253
             V   +L +L+P+F  S+L+ +F+IG+ +F+PF+ ID++V+++L++MGMMMVSP T+SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  254  FKLMLFVLVDGWQLLLGSLAQSFV  277
            FKL++FVLVDGW L+LG L  S++
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSYL  216

503) fliP in NC_020555


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  112 bits (408),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 83/195 (43%), Positives = 141/195 (73%), Gaps = 6/195 (3%)

Query  85   PSLVLVMTSFTRIVIVFAFLRTALGTQQSPPTQVLVSLALVLTFFIMEPVATK-SYEVGI  143
            P LV++ T+F ++ +VF++LR ALG QQ PP   + +LALVLT+FIM PV+      +  
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  144  KPYTEKQISYDEAFER-AIVPFKDFMIKNTREKDLALFFRIRNLENPQ----TVDDVPLT  198
               ++   +  + +++ A+VP++DF+ +NT   ++++F  I +   P+    +V   +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  199  VLIPAFMISELKTAFWIGFLLYLPFLVIDMVISSvlmamgmmmlppvmISLPFKILVFVL  258
            +L+PAF +S+L+ AF IG+LL+LPF+ ID+++S++L+AMGMMM++P+ +SLPFK+LVFVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  259  VDGWNLLIGNLVQGF  273
            VDGW+L++G+LV ++
Sbjct  201  VDGWSLVLGQLVGSY  215

504) fliP in NC_017761


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  112 bits (409),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 83/195 (43%), Positives = 141/195 (73%), Gaps = 6/195 (3%)

Query  85   PSLVLVMTSFTRIVIVFAFLRTALGTQQSPPTQVLVSLALVLTFFIMEPVATK-SYEVGI  143
            P LV++ T+F ++ +VF++LR ALG QQ PP   + +LALVLT+FIM PV+      +  
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  144  KPYTEKQISYDEAFER-AIVPFKDFMIKNTREKDLALFFRIRNLENPQ----TVDDVPLT  198
               ++   +  + +++ A+VP++DF+ +NT   ++++F  I +   P+    +V   +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  199  VLIPAFMISELKTAFWIGFLLYLPFLVIDMVISSvlmamgmmmlppvmISLPFKILVFVL  258
            +L+PAF +S+L+ AF IG+LL+LPF+ ID+++S++L+AMGMMM++P+ +SLPFK+LVFVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  259  VDGWNLLIGNLVQGF  273
            VDGW+L++G+LV ++
Sbjct  201  VDGWSLVLGQLVGSY  215

505) N646_1343 in NC_022349


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  112 bits (409),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 87/207 (43%), Positives = 151/207 (73%), Gaps = 7/207 (3%)

Query  88   QILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFVMS  147
            Q++AL+ ML+ LP +V++ T+F ++ VV S+LR+A+G+QQ P+N  I G+AL LT+F+M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  148  PVLNEINDKAVQPYLNEQVTA--REAFDAAQAPMKAFMLKQTRIKDLETFVTMSGEQ---  202
            PV  +++ +  +  L++++ A  ++  + A  P + F+ ++T I ++  F  +  ++   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  203  --VENPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmlspmI  260
               ++    S+ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V+++L+AMGMMM+SPM 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  261  VSLPFKLMLFVLVDGWNLILSTLAGSF  287
            +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

506) M636_10725 in NC_021848


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  112 bits (409),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 89/209 (43%), Positives = 153/209 (74%), Gaps = 11/209 (5%)

Query  88   QILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFVMS  147
            Q++AL+ ML+ LP +V++ T+F ++ VV S+LR+A+G+QQ P+N  I G+AL LT+F+M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  148  PVLNEINDTAIQPYLNEQVTA--REAFDAAQVPMKAFMLKQTRIKDLETFVNMSGE----  201
            PV  +++    +  L++++ A  ++  + A VP + F+ ++T I ++  F ++  +    
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  202  ---QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmlsp  258
               +  +P+  S+ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V+++L+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  259  mIVSLPFKLMLFVLVDGWNLILSTLAGSF  287
            M +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

507) fliP in NC_004603


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  112 bits (409),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 89/209 (43%), Positives = 153/209 (74%), Gaps = 11/209 (5%)

Query  88   QILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFVMS  147
            Q++AL+ ML+ LP +V++ T+F ++ VV S+LR+A+G+QQ P+N  I G+AL LT+F+M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  148  PVLNEINDTAIQPYLNEQVTA--REAFDAAQVPMKAFMLKQTRIKDLETFVNMSGE----  201
            PV  +++    +  L++++ A  ++  + A VP + F+ ++T I ++  F ++  +    
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  202  ---QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmlsp  258
               +  +P+  S+ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V+++L+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  259  mIVSLPFKLMLFVLVDGWNLILSTLAGSF  287
            M +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

508) BN865_13040 in NC_022132


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  112 bits (408),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 87/213 (41%), Positives = 154/213 (73%), Gaps = 6/213 (2%)

Query  40   LVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  99
            L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  100  FFIMEPVATKSYNEGIKPYLAEQIGY--EEAFARGVKPFKDFMLKNTREKDLALFYRI--  155
            +FIM PV+        +  L+++IG   ++    ++ P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  156  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  213
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  214  lppvmISLPFKLLIFVLVDGWNLLVQRLVESFV  246
            ++P+ +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

509) fliP in NC_022347


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  112 bits (408),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 86/213 (41%), Positives = 154/213 (73%), Gaps = 6/213 (2%)

Query  40   LVTTLNIVIVLTILALAPSIIFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  99
            L ++ +++ +L +L++ P ++ + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  100  FFIMEPVATKSYNEGIKPYLAEQIGY--EEAFARGVKPFKDFMLKNTREKDLALFYRI--  155
            +FIM PV+        +  L+++IG   ++    ++ P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  156  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  213
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  214  lppvmISLPFKLLIFVLVDGWNLLVQRLVESFV  246
            ++P+ +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

510) CPK_ORF00233 in NC_017285


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  112 bits (409),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 88/216 (41%), Positives = 150/216 (70%), Gaps = 10/216 (4%)

Query  91   QAIILIF-LALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMF  149
            Q I L+F L++ P+LV++ T++LK+ + + LLRNALGVQQ PP+  + G+AL+L+I++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  150  PTGVAMYKDARKEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFY  209
            P G+ +  +AR + E  +   + ++ +  +  +V       P R FL RNT   Q+  F 
Sbjct  69   PVGLDV--QARLQNEELSNDIGALAHQIDQNALV-------PYRDFLQRNTDIEQVTFFN  119

Query  210  KISQKTFPSEIREHLTASDFVIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAM  269
             I Q+  P   R+ + +  ++I++PAF ++Q+++AF IG+L++LPF  IDL+ +N+L+AM
Sbjct  120  DIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAM  179

Query  270  QmmmlsplsislplkllliVMVDGWTLLLQGLMISF  305
             MMM+SP+++SLP+KLL++V+VDGW+L+L  L+ S+
Sbjct  180  GMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

511) fliP in NC_007951


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  112 bits (407),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 89/216 (42%), Positives = 148/216 (69%), Gaps = 10/216 (4%)

Query  70   GTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTTTTPPNQVLVGLAL  129
             ++Y L      LL MLS LP +V+M T+F ++ +V+SLLR+ALG    PPN  + GLAL
Sbjct  5    NSSYQLIA----LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  130  FLTLFVMSPV-LDKAYTDGYKPFSDGTIPMETAVNR-GLAPFKTFMLRQTRESDLALFAR  187
             LT+F+M+PV LD         +S++  ++   +++ +L P++ F+ R+T   ++++F  
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  188  ISHAA-PMQGPEDV---PLSLLVPSFVTSELKTGFQIGFTIFIPFLIIDmvvasvlmsmg  243
            I +   P +  + V   +L +L+P+F  S+L+ +F+IG+ +F+PF+ ID++V+++L++MG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  244  mmmvsPATISLPFKLMLFVLVDGWQLLLGSLAQSFV  279
            MMMVSP T+SLPFKL++FVLVDGW L+LG L  S++
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

512) Halha_0669 in NC_019978


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (406),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 79/187 (43%), Positives = 138/187 (74%), Gaps = 6/187 (3%)

Query  73   SFTRIIVVLSFLRRALATQRMPPNQVLIGLAIFLTIYIMAPVGQDINQNALQPYLAEKID  132
            +F ++ VV+S+LR AL+ Q++PPN  + GLA+ LTI+IMAPVG D++    +  L++ I+
Sbjct  29   AFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIG  88

Query  133  R-GTAFDR-TIKPLRRFMFKQTREKDIALFVNLSNSKRP----KGPKELSTYVLIPAFII  186
              +  +D+ ++ P R F+ ++T   ++++F ++ ++K+P     + K  S  +L+PAF +
Sbjct  89   ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTL  148

Query  187  SELKTAFQIGFMIYLPFVVIDMIVASTlmsmgmmmlppvmISLPFKILLFVLVDGWYLVI  246
            S+L+ AF+IG++++LPFV ID+IV++ L++MGMMM++P+ +SLPFK+L+FVLVDGW LV+
Sbjct  149  SQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVL  208

Query  247  KSLVETF  253
              LV ++
Sbjct  209  GQLVGSY  215

513) fliP in NC_015723


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (406),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 82/196 (42%), Positives = 132/196 (68%), Gaps = 6/196 (3%)

Query  71   PAAMLMMTGFTRVIIVLGLLRSALGTASSPPNQVLVGLSLFLTFFVMAPV-FDRVYNDAY  129
            P  ++M T+F ++ +V++LLR+ALG    PPN  + GL+L LT+F+MAPV +D       
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  130  KPLSENKISleaaaakaaepl-kaFMLRQTREKDLAMFAQMAKA--PEM--QGPEEVPLS  184
              LS++  +L     + A    + F+ R+T   +++ F ++ +   PE   ++    +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  185  ILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAMGMMMVPPATISLPFKLMLFVL  244
            IL+PAF  S+L+ AF+IG+ +F+PF+ IDL+V+++L+AMGMMMV+P T+SLPFKL++FVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  245  VDGWQLLLGSLAQSFM  260
            VDGW L+LG L  S++
Sbjct  201  VDGWSLVLGQLVGSYL  216

514) fliP in NC_017531


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (406),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 86/208 (42%), Positives = 144/208 (70%), Gaps = 12/208 (5%)

Query  43   TLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVllgltlfltffIMAP  102
            +L+F+  L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GL+L LT+FIMAP
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  103  ---TFDKIYQDAYLPFSQDKISMDVAIDKGA-QPLREFMLRQTREADLALFARLANTA-P  157
                 +   Q+    +S+D  ++   ID+ A  P R+F+ R+T   ++++F  + +   P
Sbjct  70   VGLDVQARLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  158  IAGPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPA  214
                ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P 
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  215  TIALPFKLMLFVLVDGWQLLVGSLAQSF  242
            T++LPFKL++FVLVDGW L++G L  S+
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

515) fliP in NC_013956


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (406),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 86/208 (42%), Positives = 144/208 (70%), Gaps = 12/208 (5%)

Query  43   TLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVllgltlfltffIMAP  102
            +L+F+  L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GL+L LT+FIMAP
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  103  ---TFDKIYQDAYLPFSQDKISMDVAIDKGA-QPLREFMLRQTREADLALFARLANTA-P  157
                 +   Q+    +S+D  ++   ID+ A  P R+F+ R+T   ++++F  + +   P
Sbjct  70   VGLDVQARLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  158  IAGPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPA  214
                ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P 
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  215  TIALPFKLMLFVLVDGWQLLVGSLAQSF  242
            T++LPFKL++FVLVDGW L++G L  S+
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

516) PAGR_g1736 in NC_017554


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (406),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 86/208 (42%), Positives = 144/208 (70%), Gaps = 12/208 (5%)

Query  43   TLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVllgltlfltffIMAP  102
            +L+F+  L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GL+L LT+FIMAP
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  103  ---TFDKIYQDAYLPFSQDKISMDVAIDKGA-QPLREFMLRQTREADLALFARLANTA-P  157
                 +   Q+    +S+D  ++   ID+ A  P R+F+ R+T   ++++F  + +   P
Sbjct  70   VGLDVQARLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  158  IAGPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPA  214
                ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P 
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  215  TIALPFKLMLFVLVDGWQLLVGSLAQSF  242
            T++LPFKL++FVLVDGW L++G L  S+
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

517) fliP in NC_016816


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (406),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 86/208 (42%), Positives = 144/208 (70%), Gaps = 12/208 (5%)

Query  43   TLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVllgltlfltffIMAP  102
            +L+F+  L+ LP +++M T+F ++ +VF+LLRNALG    PPN  + GL+L LT+FIMAP
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  103  ---TFDKIYQDAYLPFSQDKISMDVAIDKGA-QPLREFMLRQTREADLALFARLANTA-P  157
                 +   Q+    +S+D  ++   ID+ A  P R+F+ R+T   ++++F  + +   P
Sbjct  70   VGLDVQARLQNE--ELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  158  IAGPEAV---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPA  214
                ++V   ++ IL+PA+  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P 
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  215  TIALPFKLMLFVLVDGWQLLVGSLAQSF  242
            T++LPFKL++FVLVDGW L++G L  S+
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

518) fliP in NC_004547


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (405),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 87/209 (42%), Positives = 146/209 (70%), Gaps = 14/209 (6%)

Query  57   TLVFLTSLTFLPAALLMMTSFTRIIIVLSLLRNALGTPTAPPNQVllgltlfltffVMSP  116
            +L+F+  L+ LP  ++M T+F ++ +V+SLLRNALG    PPN  + GL+L LT+F+M+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  117  V----LNRVYDEAYLPFSQDQISMEVAIERGA-EPLREFMLRQTRETDLALFTRLAEI--  169
            V      R+ +E    +S+D  ++   I++ A  P R+F+ R+T   ++++F  + +   
Sbjct  70   VGLDVQARLQNEE---LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  170  PEI--QGPEAVPMRVLLPAFVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPP  227
            PE   ++  + ++ +L+PAF  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  228  ATISLPFKLMLFVLVDGWQLLLGSLAQSF  256
             T+SLPFKL++FVLVDGW L+LG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

519) fliP in NC_012438


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 88/212 (42%), Positives = 149/212 (71%), Gaps = 7/212 (3%)

Query  33   LDTSLKILLLITVLSIAPAILISMTSFVRIVIVLSLLRHALGIPTAPPNQVIVGLALFLT  92
            L++S +++ L+ +LS+ P +++  T+F+++ +V+SLLR+ALG+   PPN  I GLAL LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  93   FFIMKPVFDKINEVSLTPYLKKQISDV--QAIENAKQPLKEFMLKNTRKEDLKLFIDISK  150
            +FIM PV   ++       L ++I+ +  Q  +NA  P ++F+ +NT  E++ +F DI +
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  151  EK-PQKLEDV----SMTTLIPAFMISEIKTAFEIVFIIYLPFIVIDFVVASILmsmgmmm  205
            +K P++  D     S+  L+PAF +S+++ AF I ++++LPF+ ID++V++IL++MGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  206  vppmFISLPFKLMLFVLADGWELLTKALIQSY  237
            V+PM +SLPFKL++FVL DGW L+   L+ SY
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

520) B565_1109 in NC_015424


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (405),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 89/209 (43%), Positives = 150/209 (72%), Gaps = 11/209 (5%)

Query  53   QVLALMTALSFLPAMVIMMTSFTRIIVVLGILRQAIGLQQSPSNQVLIGIALFMSFFIMS  112
            Q++AL+  LS LP +V+M T+F ++ VV+++LR+A+G+QQ P+N  + G+AL +++FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  113  PV-LD---RINDEALQPYLAETIQAKEALERAELPIHQFMLAQTRIKDLNTFMEIANVQ-  167
            PV LD   R+++E L   ++   +  +  + A +P ++F+  +T I ++  F +I + + 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQID--QNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  168  ----VEKPADVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVasilmamgmmmlsp  223
                 +     +L +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V++IL+AMGMMM+SP
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  224  miVSLPFKLMLFVMVDGWNLILGSLANSF  252
            M +SLPFKL++FV+VDGW+L+LG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

521) BC1001_3381 in NC_015136


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (405),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 87/204 (43%), Positives = 143/204 (71%), Gaps = 6/204 (2%)

Query  80   LLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPV-L  138
            LL MLS LP +V+M T+F ++ +V+SLLR+ALG    PPN  + GLAL LT+F+M+PV L
Sbjct  13   LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGL  72

Query  139  DKAYTDGYKPFSEGTVPMETAVSR-GLAPFKTFMLRQTRESDLALFARISHAA-PMQGPE  196
            D         +S++  ++   + + +L P++ F+ R+T   ++++F  I +   P +  +
Sbjct  73   DVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  197  DV---PLSLLVPSFVTSELKTGFQIGFTIFIPFLIIDmvvasvlmsmgmmmvsPATISLP  253
             V   +L +L+P+F  S+L+ +F+IG+ +F+PF+ ID++V+++L++MGMMMVSP T+SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  254  FKLMLFVLVDGWQLLLGSLAQSFV  277
            FKL++FVLVDGW L+LG L  S++
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSYL  216

522) BC1003_3339 in NC_014539


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (405),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 87/204 (43%), Positives = 143/204 (71%), Gaps = 6/204 (2%)

Query  80   LLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPV-L  138
            LL MLS LP +V+M T+F ++ +V+SLLR+ALG    PPN  + GLAL LT+F+M+PV L
Sbjct  13   LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGL  72

Query  139  DKAYTDGYKPFSEGTVPMETAVSR-GLAPFKTFMLRQTRESDLALFARISHAA-PMQGPE  196
            D         +S++  ++   + + +L P++ F+ R+T   ++++F  I +   P +  +
Sbjct  73   DVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  197  DV---PLSLLVPSFVTSELKTGFQIGFTIFIPFLIIDmvvasvlmsmgmmmvsPATISLP  253
             V   +L +L+P+F  S+L+ +F+IG+ +F+PF+ ID++V+++L++MGMMMVSP T+SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  254  FKLMLFVLVDGWQLLLGSLAQSFV  277
            FKL++FVLVDGW L+LG L  S++
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSYL  216

523) fliP in NC_006370


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (405),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 88/207 (43%), Positives = 153/207 (74%), Gaps = 7/207 (3%)

Query  83   QILGLMTALGFLPAIIILMTSFTRIVVVLSILRQAMGLQQTPSNQVIIGIALFLTLFVMS  142
            Q+++L+  L+ LP ++++ T+F ++ VV+S+LR+A+G+QQ P+N  I G+AL LT+F+M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  143  PVIDKVNADAVQPYINEEITA-AQAFE-TAQVPLRQFMLKQTRVKDLESFVNM--SGSTA  198
            PV   V+A   +  ++++I A A+ ++  A VP R+F+ ++T + ++  F ++  +    
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  199  TAPEDV---PITVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmlspmI  255
               + V   ++ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V+++L+AMGMMM+SPM 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  256  VSLPFKLMLFVLVDGWNLILSTLAGSF  282
            +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

524) fliP in NC_009707


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (403),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 150/213 (71%), Gaps = 6/213 (2%)

Query  37   LVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  96
            L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  97   FFIMEPVATKSYNEGIKPYLAEQIGYEEAFIKGTK--PFKDFMLKNTREKDLALFYRI--  152
            +FIM PV+        +  L+++IG     I      P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  153  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  210
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  211  lpptmISLPFKLLIFVLVDGWNLLVQRLVESFV  243
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

525) Sulba_1139 in NC_018002


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (404),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 87/212 (42%), Positives = 151/212 (72%), Gaps = 6/212 (2%)

Query  41   LVTSMNLVLVLTILTLAPSLIFMMTSFLRLLIVFSFLRQAMGTQQMPPSQVMVSLAMILT  100
            L +S +L+ +L +L++ P L+ M T+FL+L +VFS+LR+A+G QQ+PP+  + +LA++LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  101  FFIMEPVMKESYDVAVKPYLAEKMSY--QEAFEKGSAPFKAFMIRNTREKDLALFFRIRN  158
            +FIM PV  +      +  L++ ++   ++  +++  P++ F+ RNT   ++++F  I +
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  159  LENP----KNIEDVPLTVAMPAFMISELKTAFEIGFLLYLPFLVIDmvvssvlmamgmmm  214
               P     ++   +L + MPAF +S+L+ AF IG+LL+LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  215  lppamISLPFKLLIFVLVDGWNLLVQRLVESF  246
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

526) bglu_1g00190 in NC_012724


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (405),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 87/216 (41%), Positives = 146/216 (68%), Gaps = 12/216 (5%)

Query  57   GTTYSLSVQTMLLLTMLSFLPAIVLMMTSFTRIIIVLSLMRQALGTATTPPNQVLVGLAL  116
             ++Y L      LL MLS LP +V+M T+F ++ +V+SL+R+ALG    PPN  + GLAL
Sbjct  5    NSSYQLIA----LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  117  FLTLFVMSPV---IDRAYNDGYKPFSAGTLPMDQAVQRGLAPFKTFMLKQTREGDLALFA  173
             LT+F+M+PV   ++   ++   +   G+L+ +Q  Q +L P++ F+ ++T   ++++F 
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALA-HQIDQNALVPYRDFLQRNTDIEQVTFFN  119

Query  174  KIAK----APAMQGPEDVPLPLLVPAFVTSELKTGFQIGFTIFIPFLIIDLvvasvlmsm  229
             I +        ++    +L +L+PAF  S+L+ +F+IG+ +F+PF+ IDL+V+++L++M
Sbjct  120  DIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAM  179

Query  230  gmmmvsPTTISLPFKLMLFVLVDGWQLLIGSLAQSF  265
            GMMMVSP T+SLPFKL++FVLVDGW L++G L  S+
Sbjct  180  GMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

527) CP1046 in NC_002179


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (406),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 88/216 (41%), Positives = 149/216 (69%), Gaps = 10/216 (4%)

Query  91   QAIILIF-LALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMF  149
            Q I L+F L++ P+LV++ T++LK+ + + LLRNALGVQQ PP+  + G+AL+L+I++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  150  PTGVAMYKDARKEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFY  209
            P G+ +  +AR + E  +   + ++ +  +  +V       P R FL RNT   Q+  F 
Sbjct  69   PVGLDV--QARLQNEELSNDIGALAHQIDQNALV-------PYRDFLQRNTDIEQVTFFN  119

Query  210  KISQKTFPSEIRAHLTASDFVIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAM  269
             I Q+  P   R  + +  ++I++PAF ++Q+++AF IG+L++LPF  IDL+ +N+L+AM
Sbjct  120  DIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAM  179

Query  270  QmmmlsplsislplkllliVMVDGWTLLLQGLMISF  305
             MMM+SP+++SLP+KLL++V+VDGW+L+L  L+ S+
Sbjct  180  GMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

528) yscR in NC_000922


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (406),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 88/216 (41%), Positives = 149/216 (69%), Gaps = 10/216 (4%)

Query  91   QAIILIF-LALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMF  149
            Q I L+F L++ P+LV++ T++LK+ + + LLRNALGVQQ PP+  + G+AL+L+I++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  150  PTGVAMYKDARKEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFY  209
            P G+ +  +AR + E  +   + ++ +  +  +V       P R FL RNT   Q+  F 
Sbjct  69   PVGLDV--QARLQNEELSNDIGALAHQIDQNALV-------PYRDFLQRNTDIEQVTFFN  119

Query  210  KISQKTFPSEIRAHLTASDFVIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAM  269
             I Q+  P   R  + +  ++I++PAF ++Q+++AF IG+L++LPF  IDL+ +N+L+AM
Sbjct  120  DIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAM  179

Query  270  QmmmlsplsislplkllliVMVDGWTLLLQGLMISF  305
             MMM+SP+++SLP+KLL++V+VDGW+L+L  L+ S+
Sbjct  180  GMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

529) yscR in NC_002491


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (406),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 88/216 (41%), Positives = 149/216 (69%), Gaps = 10/216 (4%)

Query  91   QAIILIF-LALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMF  149
            Q I L+F L++ P+LV++ T++LK+ + + LLRNALGVQQ PP+  + G+AL+L+I++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  150  PTGVAMYKDARKEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFY  209
            P G+ +  +AR + E  +   + ++ +  +  +V       P R FL RNT   Q+  F 
Sbjct  69   PVGLDV--QARLQNEELSNDIGALAHQIDQNALV-------PYRDFLQRNTDIEQVTFFN  119

Query  210  KISQKTFPSEIRAHLTASDFVIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAM  269
             I Q+  P   R  + +  ++I++PAF ++Q+++AF IG+L++LPF  IDL+ +N+L+AM
Sbjct  120  DIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAM  179

Query  270  QmmmlsplsislplkllliVMVDGWTLLLQGLMISF  305
             MMM+SP+++SLP+KLL++V+VDGW+L+L  L+ S+
Sbjct  180  GMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

530) yscR in NC_005043


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  111 bits (406),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 88/216 (41%), Positives = 149/216 (69%), Gaps = 10/216 (4%)

Query  91   QAIILIF-LALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMF  149
            Q I L+F L++ P+LV++ T++LK+ + + LLRNALGVQQ PP+  + G+AL+L+I++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  150  PTGVAMYKDARKEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFY  209
            P G+ +  +AR + E  +   + ++ +  +  +V       P R FL RNT   Q+  F 
Sbjct  69   PVGLDV--QARLQNEELSNDIGALAHQIDQNALV-------PYRDFLQRNTDIEQVTFFN  119

Query  210  KISQKTFPSEIRAHLTASDFVIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAM  269
             I Q+  P   R  + +  ++I++PAF ++Q+++AF IG+L++LPF  IDL+ +N+L+AM
Sbjct  120  DIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAM  179

Query  270  QmmmlsplsislplkllliVMVDGWTLLLQGLMISF  305
             MMM+SP+++SLP+KLL++V+VDGW+L+L  L+ S+
Sbjct  180  GMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

531) bgla_1g00250 in NC_015381


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (400),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 90/215 (42%), Positives = 147/215 (69%), Gaps = 10/215 (4%)

Query  70   GTTYSLSVQTMLLLTMLSFLPAIVLMMTSFTRIIIVLSLLRQALGTTTTPPNQVLVGLAL  129
             ++Y L      LL MLS LP +V+M T+F ++ +V+SLLR+ALG    PPN  + GLAL
Sbjct  5    NSSYQLIA----LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  130  FLTLFVMSPV-LDRAYTDGYQPFSAGTLPMDQAV-QRGLAPFKTFMLKQTRESDLALFAR  187
             LT+F+M+PV LD       + +S +  ++ + + Q +L P++ F+ ++T   ++++F  
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  188  ISKAP-PMQGPEDV---PLPLLVPAFLTSELKTGFQIGFTIFIPFLIIDLvvasvlmsmg  243
            I +   P +  + V   +L +L+PAF  S+L+ +F+IG+ +F+PF+ IDL+V+++L++MG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  244  mmmvsPTTISLPFKLMLFVLVDGWQLLIGSLAQSF  278
            MMMVSP T+SLPFKL++FVLVDGW L++G L  S+
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

532) fliP in NC_008787


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (402),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 89/213 (42%), Positives = 149/213 (70%), Gaps = 6/213 (2%)

Query  37   LVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  96
            L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  97   FFIMEPVATKSYNEGIKPYLSEKIGYEEAFIKGAK--PFKDFMLKNTREKDLALFYRI--  152
            +FIM PV+        +  LS+ IG     I      P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  153  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  210
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  211  lpptmISLPFKLLIFVLVDGWNLLVQRLVESFV  243
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

533) ICDCCJ07001_789 in NC_014802


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (402),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 149/213 (70%), Gaps = 6/213 (2%)

Query  23   LVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  82
            L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  83   FFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAK--PFKDFMLKNTREKDLALFYRI--  138
            +FIM PV+        +  L++ IG     I      P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  139  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  196
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  197  lpptmISLPFKLLIFVLVDGWNLLVQRLVESFV  229
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

534) B932_0505 in NC_019396


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (402),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 88/212 (42%), Positives = 146/212 (69%), Gaps = 16/212 (7%)

Query  43   QLSALITVLSLAPSLLVMITAFTRIVIVLSLLRSALGAQGTPPNTVLIGLALFLTLFVMQ  102
            QL AL+ +LS+ P L+VM TAF ++ +V+SLLR+ALG Q  PPN  + GLAL LT+F+M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  103  PTLQKSWDAGVAPMMAGQ--VGEMEGLSRAAQ-----PFHDFMAATARPADISTFLNIAH  155
            P      + +V + +  +    ++ +L++  +     P++DF+   +   +++ F +I +
Sbjct  69   PV-----GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  156  EKPPEKIMDT----PWRVLVPAFMIGELRRGFEMGFLLYLPFLVIDlvvssvlmslgmmm  211
            +K PE+  D+    +  +L+PAF +++L  +F +G+LL+LPF+ IDL+VS++L+++GMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  212  lppsTVSLPFKLIFFVIVDGWSLVAGSLVRSF  243
            ++P T+SLPFKL+ FV+VDGWSLV G LV S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

535) Fbal_1045 in NC_014541


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (402),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 91/211 (44%), Positives = 155/211 (74%), Gaps = 14/211 (6%)

Query  46   QILGLMTLLTFLPAMVILMTSFTRIIVVLAILRQALGLQQTPSNQVLLGMALFLSLFIMT  105
            Q+++L+ +L+ LP +V++ T+F ++ VV+++LR+ALG+QQ P+N  + G+AL L++FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  106  PV-LD---RVYEDALVPYMGEQIGAL--EAMERAKAPVKDFMLSQTRITDINTFVEI--S  157
            PV LD   R+ ++ L    +++IGAL  +  + A  P +DF+  +T I ++  F +I  +
Sbjct  69   PVGLDVQARLQNEEL----SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  158  GRTDI--ASVDEVPMTVLIPAFVTSELKTAFQIGFMLFVPFLVIDlvvasvlmamgmmml  215
             + +    SV   ++ +L+PAF  S+L+ AF+IG++LF+PF+ IDL+V+++L+AMGMMM+
Sbjct  125  KWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  216  spmIVSLPFKIMLFVLVDGWNLVMGTLATSF  246
            SPM +SLPFK+++FVLVDGW+LV+G L  S+
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

536) fliP in NC_022362


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 149/213 (70%), Gaps = 6/213 (2%)

Query  37   LVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  96
            L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  97   FFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAK--PFKDFMLKNTREKDLALFYRI--  152
            +FIM PV+        +  L++ IG     I      P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  153  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  210
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  211  lpptmISLPFKLLIFVLVDGWNLLVQRLVESFV  243
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

537) fliP in NC_022352


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (402),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 149/213 (70%), Gaps = 6/213 (2%)

Query  26   LVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  85
            L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  86   FFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAK--PFKDFMLKNTREKDLALFYRI--  141
            +FIM PV+        +  L++ IG     I      P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  142  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  199
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  200  lpptmISLPFKLLIFVLVDGWNLLVQRLVESFV  232
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

538) fliP in NC_022351


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 149/213 (70%), Gaps = 6/213 (2%)

Query  37   LVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  96
            L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  97   FFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAK--PFKDFMLKNTREKDLALFYRI--  152
            +FIM PV+        +  L++ IG     I      P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  153  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  210
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  211  lpptmISLPFKLLIFVLVDGWNLLVQRLVESFV  243
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

539) fliP in NC_022353


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 149/213 (70%), Gaps = 6/213 (2%)

Query  37   LVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  96
            L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  97   FFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAK--PFKDFMLKNTREKDLALFYRI--  152
            +FIM PV+        +  L++ IG     I      P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  153  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  210
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  211  lpptmISLPFKLLIFVLVDGWNLLVQRLVESFV  243
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

540) M635_08385 in NC_021834


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 149/213 (70%), Gaps = 6/213 (2%)

Query  37   LVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  96
            L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  97   FFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAK--PFKDFMLKNTREKDLALFYRI--  152
            +FIM PV+        +  L++ IG     I      P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  153  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  210
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  211  lpptmISLPFKLLIFVLVDGWNLLVQRLVESFV  243
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

541) fliP in NC_009839


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 149/213 (70%), Gaps = 6/213 (2%)

Query  37   LVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  96
            L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  97   FFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAK--PFKDFMLKNTREKDLALFYRI--  152
            +FIM PV+        +  L++ IG     I      P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  153  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  210
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  211  lpptmISLPFKLLIFVLVDGWNLLVQRLVESFV  243
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

542) fliP in NC_017279


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 149/213 (70%), Gaps = 6/213 (2%)

Query  37   LVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  96
            L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  97   FFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAK--PFKDFMLKNTREKDLALFYRI--  152
            +FIM PV+        +  L++ IG     I      P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  153  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  210
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  211  lpptmISLPFKLLIFVLVDGWNLLVQRLVESFV  243
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

543) fliP in NC_017280


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 149/213 (70%), Gaps = 6/213 (2%)

Query  37   LVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  96
            L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  97   FFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAK--PFKDFMLKNTREKDLALFYRI--  152
            +FIM PV+        +  L++ IG     I      P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  153  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  210
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  211  lpptmISLPFKLLIFVLVDGWNLLVQRLVESFV  243
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

544) fliP in NC_002163


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 149/213 (70%), Gaps = 6/213 (2%)

Query  37   LVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  96
            L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  97   FFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAK--PFKDFMLKNTREKDLALFYRI--  152
            +FIM PV+        +  L++ IG     I      P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  153  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  210
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  211  lpptmISLPFKLLIFVLVDGWNLLVQRLVESFV  243
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

545) fliP in NC_018521


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 149/213 (70%), Gaps = 6/213 (2%)

Query  37   LVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  96
            L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  97   FFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAK--PFKDFMLKNTREKDLALFYRI--  152
            +FIM PV+        +  L++ IG     I      P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  153  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  210
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  211  lpptmISLPFKLLIFVLVDGWNLLVQRLVESFV  243
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

546) fliP in NC_018709


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 149/213 (70%), Gaps = 6/213 (2%)

Query  37   LVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  96
            L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  97   FFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAK--PFKDFMLKNTREKDLALFYRI--  152
            +FIM PV+        +  L++ IG     I      P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  153  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  210
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  211  lpptmISLPFKLLIFVLVDGWNLLVQRLVESFV  243
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

547) fliP in NC_003912


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 149/213 (70%), Gaps = 6/213 (2%)

Query  37   LVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  96
            L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  97   FFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAK--PFKDFMLKNTREKDLALFYRI--  152
            +FIM PV+        +  L++ IG     I      P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  153  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  210
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  211  lpptmISLPFKLLIFVLVDGWNLLVQRLVESFV  243
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

548) fliP in NC_017281


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 149/213 (70%), Gaps = 6/213 (2%)

Query  37   LVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILT  96
            L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR+A+G Q +PPN  +  LAL+LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  97   FFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAK--PFKDFMLKNTREKDLALFYRI--  152
            +FIM PV+        +  L++ IG     I      P++DF+ +NT   ++++F  I  
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  153  RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmm  210
             + P+    ++   +L +L+PAF +S+L+ AF IG+L++LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  211  lpptmISLPFKLLIFVLVDGWNLLVQRLVESFV  243
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S++
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

549) W5S_1792 in NC_017845


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 86/209 (42%), Positives = 146/209 (70%), Gaps = 14/209 (6%)

Query  25   TLVFLTSLTFIPAALLMMTSFTRIIIVLSLLRNALGTPTAPPNQVllgltlfltffVMSP  84
            +L+F+  L+ +P  ++M T+F ++ +V+SLLRNALG    PPN  + GL+L LT+F+M+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  85   V----LNRVYEEAYLPFSQDQISMEVAIERGA-EPVREFMLRQTRETDLALFTRLAEI--  137
            V      R+ +E    +S+D  ++   I++ A  P R+F+ R+T   ++++F  + +   
Sbjct  70   VGLDVQARLQNEE---LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  138  PEI--QGPEAVPMRVLLPAFVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPP  195
            PE   ++  + ++ +L+PAF  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  196  ATISLPFKLMLFVLVDGWQLLLGSLAQSF  224
             T+SLPFKL++FVLVDGW L+LG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

550) fliP in NC_015730


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 87/214 (41%), Positives = 138/214 (65%), Gaps = 9/214 (4%)

Query  37   ARTIQLFILITVLSLAPGLAIMITCFPFLVTVLSILRQAIGLQQSPPNMLIVSLALFLTY  96
              + QL+ L+ +LS+ P L +M T F  L  V+S+LR+A+G+QQ PPN+ I +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  97   FIMEPV---FQAAWQNGIQPLTDNAIDAETAFVRTLEPFRSFM--AARLDPDTFFA--MA  149
            FIM PV    QA  QN   +    A+  +     +L P+R F+   + ++  TFF   + 
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGALAHQID-QNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  150  ELRSETIDATPTAEAplsvlvpsfllsEISRAFQIGFLVFLPFLIIDLVVAAVLMSMGMM  209
            + ++E    +  +++ L ++ +  L  +++ AF+IG+L+FLPF+ IDL+V+ +L++MGMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLS-QLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMM  182

Query  210  MVPPVIVSLPFKLAFFVLADGWNLIAGSLVQSYF  243
            MV+P+ +SLPFKL  FVL DGW+L+ G LV SY+
Sbjct  183  MVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

551) fliP in NC_007575


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 143/194 (74%), Gaps = 6/194 (3%)

Query  57   PSMVLVMTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLGMILTFFVMEPVGIKAYEDGIK  116
            P +V++ T+F ++ +VF++LR+ALG QQVPP   +  L+++LT+F+M PVG+       +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  117  PYIEEKIG-YEEAFDKTAL-PFKNFMIRNTREKDLALFFRIRKMQNP----TTIAEVPLS  170
              + + IG   + +D+ AL P+++F+ RNT   ++++F  I + + P     ++   +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  171  IIIPAFVISELKTAFEIGFLLFLPFLVIDMVvasilmsmgmmmlppvmiaLPFKILIFIL  230
            I++PAF +S+L+ AF IG+LLFLPF+ ID++V++IL++MGMMM++P+ ++LPFK+L+F+L
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  231  IDGWNLLIGNLIAS  244
            +DGW+L++G+L++S
Sbjct  201  VDGWSLVLGQLVGS  214

552) PC1_2585 in NC_012917


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (401),  Expect = 7e-26, Method: Compositional matrix adjust.
 Identities = 86/209 (42%), Positives = 146/209 (70%), Gaps = 14/209 (6%)

Query  57   TLVFLTSLTFIPAALLMMTSFTRIIIVLSLLRNALGTPTAPPNQVllgltlfltffVMSP  116
            +L+F+  L+ +P  ++M T+F ++ +V+SLLRNALG    PPN  + GL+L LT+F+M+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  117  V----LNRVYEEAYLPFSQDQISMEVAIERGA-EPVREFMLRQTRETDLALFTRLAEI--  169
            V      R+ +E    +S+D  ++   I++ A  P R+F+ R+T   ++++F  + +   
Sbjct  70   VGLDVQARLQNEE---LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  170  PEI--QGPEAVPMRVLLPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPP  227
            PE   ++  + ++ +L+PAF  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  228  ATISLPFKLMLFVLVDGWQLLLGSLAQSF  256
             T+SLPFKL++FVLVDGW L+LG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

553) Sdel_1122 in NC_013512


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (400),  Expect = 7e-26, Method: Compositional matrix adjust.
 Identities = 88/212 (42%), Positives = 150/212 (71%), Gaps = 6/212 (2%)

Query  32   LVTSMNLVLVLTILVLAPSLIFMMTSFLRLLIVFSFLRQALGTQQMPPSQVMVSLAMILT  91
            L +S +L+ +L +L + P L+ M T+FL+L +VFS+LR+ALG QQ+PP+  + +LA++LT
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  92   FFIMEPVMKESYDVAIKPYLAEKMSY--QEAFEKGSAPFKAFMIRNTREKDLALFFRIRN  149
            +FIM PV  +      +  L++ ++   ++  +++  P++ F+ RNT   ++++F  I +
Sbjct  64   IFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  150  LENP----KNIEDVPLTVAMPAFMISELKTAFEIGFLLYLPFLVIDmvvssvlmamgmmm  205
               P     ++   +L + MPAF +S+L+ AF IG+LL+LPF+ ID++VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  206  lppamISLPFKLLIFVLVDGWNLLVQRLVESF  237
            ++P  +SLPFKLL+FVLVDGW+L++ +LV S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

554) fliP in NC_008228


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (400),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 84/208 (41%), Positives = 155/208 (75%), Gaps = 7/208 (3%)

Query  46   QVVAIMTALSLLPAFIMMMTSFTRIIIVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMA  105
            Q++A++  LS+LP +++M T+F ++ +V+S+LR+A+G+QQ P+N  + G++L L++FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  106  PVFEKINETALQPYLSEQITSIQAYELAKEPL---RGFMLAQTRIKDLETFVEI--GGYE  160
            PV   ++    +  LS++I ++ A ++ +++L   R+F+  +T I ++  F +I      
Sbjct  69   PVGLDVQARLQNEELSNDIGAL-AHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  161  DQFQEPADV-PMNVLIPAFVTSELKTAFQIGFMLFIPFLILDLVVasilmamgmmmlspm  219
            ++++++    ++ +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM+SPM
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  220  iVSLPFKLMLFVLVDGWNLIFGTLANSF  247
             +SLPFKL++FVLVDGW+L++G L  S+
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

555) fliP in NC_013421


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (400),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 86/209 (42%), Positives = 146/209 (70%), Gaps = 14/209 (6%)

Query  57   TLVFLTSLTFIPAALLMMTSFTRIIIVLSLLRNALGTPTAPPNQVllgltlfltffVMSP  116
            +L+F+  L+ +P  ++M T+F ++ +V+SLLRNALG    PPN  + GL+L LT+F+M+P
Sbjct  12   ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  117  V----LNRVYEEAYLPFSQDQISMEVAIERGA-EPVREFMLRQTRETDLALFTRLAEI--  169
            V      R+ +E    +S+D  ++   I++ A  P R+F+ R+T   ++++F  + +   
Sbjct  70   VGLDVQARLQNEE---LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  170  PEI--QGPEAVPMRVLLPAFVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPP  227
            PE   ++  + ++ +L+PAF  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  228  ATISLPFKLMLFVLVDGWQLLLGSLAQSF  256
             T+SLPFKL++FVLVDGW L+LG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

556) fliP in NC_010681


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  110 bits (401),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 88/216 (41%), Positives = 148/216 (69%), Gaps = 10/216 (4%)

Query  68   GTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTSTTPPNQVLVGLAL  127
             ++Y L      LL MLS LP +++M T+F ++ +V+SLLR+ALG    PPN  + GLAL
Sbjct  5    NSSYQLIA----LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  128  FLTLFVMSPV-LDKAYTDGYKPFSDGTIPMETAVNR-GLAPFKTFMLRQTRESDLALFAR  185
             LT+F+M+PV LD         +S++  ++   +++ +L P++ F+ R+T   ++++F  
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  186  ISHAA-PMQGPEDV---PLSLLVPSFVTSELKTGFQIGFTIFIPFLIIDmvvasvlmsmg  241
            I +   P +  + V   +L +L+P+F  S+L+ +F+IG+ +F+PF+ ID++V+++L++MG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  242  mmmvsPATISLPFKLMLFVLVDGWQLLLGSLAQSFV  277
            MMMVSP T+SLPFKL++FVLVDGW L+LG L  S++
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

557) Mrad2831_5050 in NC_010505


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  109 bits (398),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 92/211 (44%), Positives = 145/211 (69%), Gaps = 6/211 (2%)

Query  49   ERALQLVALITVLAVAPSVLVMATAFTRIVVVLSILRSALGTQTAPPTAVLVSLALFLTA  108
            + + QL+AL+ +L+V P ++VM+TAF ++ VV+S+LR+ALG Q  PP   + +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  109  FVMAPTGRAAYS-AGIEPLIAGRITQAQAFERAS-APFKTFMLRNVREKDLKLFLDLAKV  166
            F+MAP G    +    E L  +  + A+ +++ +  P++ F+ RN    ++ +F D+ + 
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  167  PAP-KGPEDV---GLEIVTPAFMISELRRAfeigfllfipfliidlVVASVLMAVGMMMV  222
              P +  + V   +L I+ PAF +S+L  AF IG+LLF+PF+ IDL+V+++L+A+GMMMV
Sbjct  125  KWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  223  PPATVALPFKLIFFVLVDGWTLVAGSLVQSY  253
            +P T++LPFKL+ FVLVDGW+LV G LV SY
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

558) spaP in NC_011147


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  109 bits (398),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLSKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

559) spaP in NC_006511


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  109 bits (398),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLSKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

560) Saut_1271 in NC_014506


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  109 bits (397),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/192 (42%), Positives = 142/192 (74%), Gaps = 6/192 (3%)

Query  56   PAMVLVMTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLAMILTFFVMEPIGTKAYNQGIK  115
            P +V++ T+F ++ +VF++LR+ALG QQVPP   +  LA++LT+F+M P+G     +  +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  116  PYVAKEIG-YEEAFTKTTL-PFKNFMIRNTREKDLALFLRIRKMQNP----KSVADVPLS  169
              ++++IG   + + + +L P+++F+ RNT   ++++F  I + + P     SV   +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  170  IVIPAFIISEMKTAFEIGFLLFLPFLVIDMVvasilmsmgmmmlppvmiSLPFKILVFVL  229
            I++PAF +S+++ AF IG+LLFLPF+ ID++V++IL++MGMMM++P+ +SLPFK+LVFVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  230  IDGWNLLIGNLI  241
            +DGW+L++G+L+
Sbjct  201  VDGWSLVLGQLV  212

561) fliP in NC_010334


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  109 bits (396),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 98/212 (47%), Positives = 156/212 (74%), Gaps = 16/212 (7%)

Query  41   EILALMTVLSFLPALLMMLTSFTRIIVVLAILRQALGLQQSPPNKVLIGIALVMTIFIMR  100
            +++AL+ +LS LP L++M T+F ++ VV+++LR+ALG+QQ PPN  + G+ALV+TIFIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  101  PVGQEI---YDDAFLPYDMGQIELPEAVARGE-VPLRQFMLAQTRETDLEQMLKIAD---  153
            PVG ++    ++  L+ D+G   L++ + +   VP R+F+    R+TD+EQ+  + D   
Sbjct  69   PVGLDVQARLQNEELSNDIG--ALAHQIDQNALVPYRDFL---QRNTDIEQVTFFNDIVQ  123

Query  154  ----EPITLTADEIPFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmm  209
                E    +    ++++LMPAF LS+L+ AF+IG+LLFLPF+ IDL+V+++L++MGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  210  lspliislpFKLMVFVLVDGWSMTVSTLVASY  241
            +SP+ +SLPFKL+VFVLVDGWS+ ++ LV+SY
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

562) fliP in NC_008570


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 90/209 (44%), Positives = 151/209 (73%), Gaps = 11/209 (5%)

Query  54   QVLALMTALSFLPAIVIMMTSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIMS  113
            Q++AL+  LS LP +V+M T+F ++ +V+++LR+A+G+QQ P+N  + G+AL +++FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  114  PV-LD---RINNEALQPYLAETIQAKEALEKAELPIHQFMLAQTRIKDLNTFMEIANVQ-  168
            PV LD   R++NE L   ++   +  +  ++A +P ++F+  +T I ++  F +I + + 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQID--QNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  169  ----VDKPADVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVAsilmamgmmmlsp  224
                 D     +L +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V++IL+AMGMMM+SP
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  225  mlvslPFKLMLFVMVDGWNLILGSLANSF  253
            M +SLPFKL++FV+VDGW+L+LG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

563) fliP in NC_021290


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  109 bits (397),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 90/209 (44%), Positives = 151/209 (73%), Gaps = 11/209 (5%)

Query  54   QVLALMTALSFLPAMVIMMTSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIMS  113
            Q++AL+  LS LP +V+M T+F ++ +V+++LR+A+G+QQ P+N  + G+AL +++FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  114  PV-LD---RINNEALQPYLAETIQAKEALEKAELPIHQFMLAQTRIKDLNTFMEIANVQ-  168
            PV LD   R++NE L   ++   +  +  ++A +P ++F+  +T I ++  F +I + + 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQID--QNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  169  ----VDKPADVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVAsilmamgmmmlsp  224
                 D     +L +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V++IL+AMGMMM+SP
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  225  mlvslPFKLMLFVMVDGWNLILGSLANSF  253
            M +SLPFKL++FV+VDGW+L+LG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

564) fliP in NC_009348


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  109 bits (396),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 89/209 (43%), Positives = 151/209 (73%), Gaps = 11/209 (5%)

Query  44   QVLALMTALSFLPAVVIMMTSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIMS  103
            Q++AL+  LS LP +V+M T+F ++ +V+++LR+A+G+QQ P+N  + G+AL +++FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  104  PV-LD---RINDEALQPYLAETIQAREALEKAELPIHQFMLSQTRIKDLNTFMEIADVQ-  158
            PV LD   R+++E L   ++   +  +  ++A +P ++F+  +T I ++  F +I + + 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQID--QNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  159  ----VDKPAEVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVAsilmamgmmmlsp  214
                 D     +L +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V++IL+AMGMMM+SP
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  215  mlvslPFKLMLFVMVDGWNLILGSLANSF  243
            M +SLPFKL++FV+VDGW+L+LG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

565) PCC21_026900 in NC_018525


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  109 bits (396),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 83/199 (42%), Positives = 139/199 (70%), Gaps = 12/199 (6%)

Query  67   IPAALLMMTSFTRIIIVLSLLRNALGTPTAPPNQVllgltlfltffVMSPV----LNRVY  122
            +P  ++M T+F ++ +V+SLLRNALG    PPN  + GL+L LT+F+M+PV      R+ 
Sbjct  20   LPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQ  79

Query  123  DEAYLPFSQDQISMEVAIERGA-EPVREFMLRQTRETDLALFTRLAEI--PEI--QGPEA  177
            +E    +S+D  ++   I++ A  P R+F+ R+T   ++++F  + +   PE   ++  +
Sbjct  80   NEE---LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  178  VPMRVLLPAFVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLM  237
             ++ +L+PAF  S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+SLPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  238  LFVLVDGWQLLLGSLAQSF  256
            +FVLVDGW L+LG L  S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

566) spaP in NC_010067


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGIALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETEAVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

567) sctR in NC_003361


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  109 bits (397),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 88/218 (41%), Positives = 151/218 (70%), Gaps = 14/218 (6%)

Query  88   QAIILIF-LALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMF  146
            Q I L+F L++ P+LV++ T++LK+ + + LLRNALGVQQ PP+  + G+AL+L+I++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  147  PTGVAMYNDARKEIQGNAIPRDL--FSAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQS  204
            P G+    D +  +Q + ++ D+  ++ +  +  +V       P R FL RNT   Q+  
Sbjct  69   PVGL----DVQARLQNEELSNDIGALAHQIDQNALV-------PYRDFLQRNTDIEQVTF  117

Query  205  FYKISQKTFPQEIREHMTASDFVIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLV  264
            F  I Q+  P+  R+ + +  ++I++PAF ++Q+++AF IG+L++LPF  IDL+ +N+L+
Sbjct  118  FNDIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILL  177

Query  265  AMQmmmlsplsislplklllvvmvDGWTLLLQGLMISF  302
            AM MMM+SP+++SLP+KLL+ V+VDGW+L+L  L+ S+
Sbjct  178  AMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

568) fliP in NC_020134


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  109 bits (396),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/197 (41%), Positives = 145/197 (74%), Gaps = 8/197 (4%)

Query  67   PSIIIMMTSFTRIIVVLSFLRNAMGTQQMPPNQVLIGLALFLTFFIMSPVLSDLNEQALK  126
            P +++M T+F ++ VV+S+LRNA+G QQ+PPN  + GLAL LT+FIM+PV  D++ +  +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  127  P-LSENEITLEEAIDKASYIM-KDFMLNKAKVREKDLALFANIARIEEPENLMDL----P  180
              LS++  +L + ID+ + +  +DF+  ++ +   ++++F +I +   PE   D     +
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDI--EQVTFFNDIVQNKWPERYRDSVKPDS  138

Query  181  MKVVIPAFMISELTTAFKMGFMLYIPFLVIDMVVASTlmsmgmmmlppvmISLPFKILLF  240
            + +++PAF +S+L  AFK+G++L++PF+ ID++V++ L++MGMMM++P+ +SLPFK+L+F
Sbjct  139  LLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVF  198

Query  241  LLVDGWNLVIGTIVQSF  257
            +LVDGW+LV+G +V S+
Sbjct  199  VLVDGWSLVLGQLVGSY  215

569) fliP in NC_020887


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  109 bits (396),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/197 (41%), Positives = 145/197 (74%), Gaps = 8/197 (4%)

Query  67   PSIIIMMTSFTRIIVVLSFLRNAMGTQQMPPNQVLIGLALFLTFFIMSPVLSDLNEQALK  126
            P +++M T+F ++ VV+S+LRNA+G QQ+PPN  + GLAL LT+FIM+PV  D++ +  +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  127  P-LSENEITLEEAIDKASYIM-KDFMLNKAKVREKDLALFANIARIEEPENLMDL----P  180
              LS++  +L + ID+ + +  +DF+  ++ +   ++++F +I +   PE   D     +
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDI--EQVTFFNDIVQNKWPERYRDSVKPDS  138

Query  181  MKVVIPAFMISELTTAFKMGFMLYIPFLVIDMVVASTlmsmgmmmlppvmISLPFKILLF  240
            + +++PAF +S+L  AFK+G++L++PF+ ID++V++ L++MGMMM++P+ +SLPFK+L+F
Sbjct  139  LLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVF  198

Query  241  LLVDGWNLVIGTIVQSF  257
            +LVDGW+LV+G +V S+
Sbjct  199  VLVDGWSLVLGQLVGSY  215

570) fliP in NC_016041


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 150/206 (73%), Gaps = 10/206 (4%)

Query  56   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  115
            LF+++ L+L+   ++M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L L++FIMAPV
Sbjct  14   LFMLSVLPLL---VVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  116  FEEINEKALQPYLSEEMTSIEAFNIAKEPM---RAFMLSQTRVKDLETFVQI--GGYEDL  170
              +++ +  +  LS+++ ++   +I ++++   R F+  +T + ++  F +I      + 
Sbjct  71   GLDVQARLQNEELSNDIGALAH-QIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  171  YDDPADV-PLTVLIPAFVTSELKTAFQIGFMLFIPFLILDLVVasilmamgmmmlspmiV  229
            Y D+    +L +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM+SPM +
Sbjct  130  YRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTL  189

Query  230  SLPFKLMLFVLVDGWNLIFGTLATSF  255
            SLPFKL++FVLVDGW+L++G L  S+
Sbjct  190  SLPFKLLVFVLVDGWSLVLGQLVGSY  215

571) fliP in NC_020514


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  109 bits (396),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 85/208 (41%), Positives = 155/208 (75%), Gaps = 7/208 (3%)

Query  47   QVVAIMTSLSLLPAFVMMMTSFTRIIIVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMA  106
            Q++A++  LS+LP +V+M T+F ++ +V+S+LR+A+G+QQ P+N  + G++L L++FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  PVFEKINETALQPYLNEELTSIQAYEIGKEPL---RAFMLAQTRVKDLETFVQIGGMD--  161
            PV   ++    +  L++++ ++ A +I++++L   R F+  +T + ++  F +I      
Sbjct  69   PVGLDVQARLQNEELSNDIGAL-AHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  162  GQFQDPVDV-PMNVLIPAFVTSELKTAFQIGFMLFIPFLILDLVVasilmamgmmmlspm  220
             +++D+V   ++ +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM+SPM
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  221  iVSLPFKLMLFVLVDGWNLIFGTLANSF  248
             +SLPFKL++FVLVDGW+L++G L  S+
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

572) fliP in NC_014810


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 139/188 (74%), Gaps = 6/188 (3%)

Query  67   TSFIRLIVVFSFLRTALGTQQTPPTQILVSLALILTFFIMEPTAKKSYKIAIKPYLAEKI  126
            T+F++L VVFS+LR ALG QQ PP   + +LAL+LT+FIM P +        +  L++ I
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  127  S-YTQAFER-GVVPFKEFMLKNTREKDLALFFRIRNLENP----KDVNSVPLSVLVPAFM  180
            +  ++ +++ ++VP+++F+ +NT   ++++F  I +   P      V++ +L +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  181  ISELKTAFQIGFLLYLPFLVIDMVvssilmamgmmmlppvmiSLPFKILVFILVDGFNLL  240
            +S+L+ AF+IG+LL+LPF+ ID++VS+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  241  IENLVASF  248
            + +LV+S+
Sbjct  208  LGQLVGSY  215

573) fliP in NC_018691


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 77/187 (42%), Positives = 127/187 (68%), Gaps = 6/187 (3%)

Query  70   CFTRIIIVFSLLRTAMGTQSAPPNQVllgltlfltffIMSPV-LNRVYQEAWVPLSNDEM  128
             F ++ +VFSLLR A+G Q  PPN  + GL+L LT+FIM+PV L+   +     LSND  
Sbjct  29   AFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIG  88

Query  129  GFEQALSVGS-EPFREFMMAQTREPDLALFARLAKTE----NLNGPEDVPLRVLLPAFVT  183
            ++ + +   +  P+R+F+  +T   ++++F  + +        ++    +L +L+PAF  
Sbjct  89   ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTL  148

Query  184  SELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLI  243
            S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+SLPFKL++FVLVDGW L++
Sbjct  149  SQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVL  208

Query  244  GSLAQSF  250
            G L  S+
Sbjct  209  GQLVGSY  215

574) SE451236_20545 in NC_021820


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

575) spaP in NC_011149


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

576) SEEB0189_05720 in NC_021844


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

577) SBOV29161 in NC_022241


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

578) spaP in NC_006905


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

579) CFSAN002050_20750 in NC_021818


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

580) spaP in NC_011205


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

581) spaP in NC_011294


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

582) spaP in NC_011274


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

583) spaP in NC_022221


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

584) spaP in NC_016831


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

585) spaP in NC_021810


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

586) SU5_03371 in NC_017623


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

587) CFSAN002069_17820 in NC_021812


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

588) spaP in NC_011083


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

589) spaP in NC_020307


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

590) spaP in NC_011080


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

591) SN31241_39820 in NC_021902


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

592) spaP in NC_010102


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

593) spaP in NC_012125


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

594) I137_13760 in NC_021984


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

595) spaP in NC_011094


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

596) spaP in NC_016856


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

597) spaP in NC_017046


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

598) STMMW_28521 in NC_016854


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

599) spaP in NC_003197


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

600) spaP in NC_016810


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

601) spaP in NC_016857


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

602) spaP in NC_016860


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

603) spaP in NC_021151


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

604) spaP in NC_016863


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

605) CFSAN001921_02625 in NC_021814


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

606) fliP in NC_008209


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (393),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 87/213 (41%), Positives = 136/213 (64%), Gaps = 9/213 (4%)

Query  39   ARTIQLFILITVLSLAPGLAIMITCFPFLVTVLSILRQAIGLQQSPPNMLIVSLALFLTY  98
              + QL+ L+ +LS+ P L +M T F  L  V+S+LR+A+G+QQ PPN+ I +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  99   FIMEPV---FQAAWQNGIQPLTDNAIDAETAFVRTLEPFRIFM--AGRLDPDTFFA--MA  151
            FIM PV    QA  QN   +    A+  +     +L P+R F+     ++  TFF   + 
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGALAHQID-QNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  152  ELRSETIDAAPTAEAplsvlvpsfllsEISRAFQIGFLVFLPFLIIDLVVAAVLMSMGMM  211
            + ++E    +  +++ L ++ +  L  +++ AF+IG+L+FLPF+ IDL+V+ +L++MGMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLS-QLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMM  182

Query  212  MVPPVIVSLPFKLAFFVLADGWNLIAGSLVQSY  244
            MV+P+ +SLPFKL  FVL DGW+L+ G LV SY
Sbjct  183  MVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

607) Theth_0696 in NC_015707


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 137/199 (69%), Gaps = 11/199 (5%)

Query  58   PSILVLFTSFTRIIVVFSFLRNALGTRQTPPAQVLVGLALFLTFLIMQPVWNDIYNNALQ  117
            P ++V+ T+F ++ VVFS+LRNALG +Q PP   + GLAL LT++IM PV  D+     +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  118  PYMNGQIGY--QEMFSRIMNRVRIFMINELKNHHNEGKVFLLASSVGQKF-DKLEDA--P  172
              ++ +IG   +++    +   R F    L+ + +  +V ++   V +K  ++  D+  P
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDF----LQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  173  NSILI--PAFVLGELELGFKMGMLLYIPFIVIDMVVSSILLAMGMIMIPPVLISLPFKVL  230
            +S+LI  PAF L++L+ +FK+G+LL++PF+ ID++VS+ILLAMGM+M++P+ +SLPFK+L
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  231  LFVAVNGWDLLISGLIKSF  249
            +FV V+GW L+++ L+ S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

608) fliP in NC_012039


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (393),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 89/215 (42%), Positives = 154/215 (72%), Gaps = 6/215 (2%)

Query  35   QQLVTTLNIVIVLTILALAPTIVFVMTSFLRLVVVFSFLRTALGTQTMPPNTILVTLALI  94
            + L ++ +++ +L +L++ P +V + T+FL+L VVFS+LR ALG Q +PPN  +  LAL+
Sbjct  2    ELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALV  61

Query  95   LTFFIMEPVATKSYNEGIKPYIAEQIG--YEEAFAKGVKPFKDFMLKNTREKDLALFYRI  152
            LT+FIM PV+        +  ++++IG   ++   +++ P++DF+ +NT   ++++F  I
Sbjct  62   LTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDI  121

Query  153  RNLENP----KTIDDVPLTVLVPAFMISELKTAFEIGFLLFLPFLVIDmvvssvlmamgm  208
             +   P     ++   +L +L+PAF +S+L+ AF IG+LLFLPF+ ID++VS++L+AMGM
Sbjct  122  VQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGM  181

Query  209  mmlppvmismpFKLLIFVLVDGWNLLIQNLVKSFL  243
            MM++P+ +S+PFKLL+FVLVDGW+L++ +LV S+L
Sbjct  182  MMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

609) fliP in NC_018697


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (392),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 88/214 (42%), Positives = 151/214 (71%), Gaps = 20/214 (9%)

Query  41   QILAVMTLLTVLPSLLVMMTSFTRIIIVFSILRQAMGTPQTPSNQILLGLALFLTFFIMS  100
            Q++A++ +L+VLP L+VM T+F ++ +VFS+LR+A+G  Q P+N  + GLAL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  101  PVLEKANEEALQPYLNDQIAADI-AITKAIE-----PFRGFMLLQTRSDDLEMFARISGA  154
            PV     +  LQ   N++++ DI A++  I+     P+R+F+  +T  +++  F  I   
Sbjct  69   PV-GLDVQARLQ---NEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  155  -------EPITDESDVPLSLLLPAFVTSELKTAFQIGFMIFVPFLIIDmvvasvlmsmgm  207
                   +++  +S   L +L+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L++MGM
Sbjct  125  KWPERYRDSVKPDS---LLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGM  181

Query  208  mmlsplIISLPFKLMLFVLVDGWSLIMETLAASF  241
            MM+SP+ +SLPFKL++FVLVDGWSL++  L +S+
Sbjct  182  MMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

610) fliP in NC_014034


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (393),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 90/217 (42%), Positives = 138/217 (64%), Gaps = 11/217 (5%)

Query  31   SLTNSSLILIAGITLLSLAPGLAIMVTCFPFIVTVLSILRQAMGLQQSPPNMLIISLALF  90
             L NSS  LIA + +LS+ P L +M T F  +  V+S+LR+A+G+QQ PPN+ I +LAL 
Sbjct  2    ELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALV  61

Query  91   LTWFVMEPTFMASYQAGIEPLIAQKIDIVTAFERGVE-----PFRIFMAGRTDPET---F  142
            LT F+M P  +   QA ++    +  + + A+ + ++     P+R F+   TD E    F
Sbjct  62   LTIFIMAPVGLDV-QARLQN--EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFF  118

Query  143  TQLAAIREGATYTGTAREAPLSILVPSFMLSEITRAFEIGFLVFLPFLIIDLVVSAILMS  202
             ++   +    Y ++ +  +L IL+P+F LS++  AF IG+L+FLPF+ IDL+VS IL++
Sbjct  119  NDIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLA  178

Query  203  MGmmmvppavvaLPFKLAFFVVANGWVLLSGALVRSY  239
            MGMMMV+P  ++LPFKL  FV+ +GW L+ G LV SY
Sbjct  179  MGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

611) fliP in NC_016745


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (392),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 95/207 (46%), Positives = 151/207 (73%), Gaps = 7/207 (3%)

Query  45   QVLALMTALSFLPAVVIMMTSFTRIIVVLSILRQALGLQQSPSNQVLIGISLFLSFFIMA  104
            Q++AL+  LS LP +V+M T+F ++ VV+S+LR+ALG+QQ P+N  + G++L L++FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  105  PVLDRVNAEALQPYLAEEIGS-REALARAEL-PIRDFMLAQTRVKDLDTFLNIANVQ---  159
            PV   V+A   +  L+++IG+  + + +  L P RDF+  +T + ++  F +I + +   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  160  --VDSEAEVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVasilmamgmmmlspml  217
               DS    +L +L+PAF  S+L+ AF+IG++LFLPF+ IDL+V++IL+AMGMMM+SPM 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  218  islpFKLMLFVLVDGWNLIMGTLATSF  244
            +SLPFKL++FVLVDGW+L++G L  S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

612) fliP in NC_016112


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (392),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 90/207 (44%), Positives = 147/207 (72%), Gaps = 6/207 (2%)

Query  45   QILALMTMLTVLPSLLLTMTSFTRIMIVLGLLRQALGTAQAPSNQILLGLSLFLTFFIMA  104
            Q++AL+ ML+VLP L++  T+F ++ +V++LLR+ALG  Q P+N  + GL+L LT+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  105  PVFDKVNRDAIQPYLEEKIDVLTAV--ENASVPFRQFMIRQTRESDLEMFLRISGHEEVE  162
            PV   V+    +  L + I+ L+    +NA VP+R+F+ R+T   ++  F  I  +   E
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  163  ----SVDDVPFSVLLPAYVTSELKTAFQIGFLIFLPFLVIDlvvasvlmsmgmmmlspmI  218
                SV   ++ +L+PA+  S+L+ AF+IG+L+FLPF+ IDL+V+++L++MGMMM+SPM 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  219  ISLPFKIMLFVMADGWSLIMEMLAASF  245
            +SLPFK+++FV+ DGWSL++  L +S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

613) fliP in NC_009428


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (391),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 91/210 (44%), Positives = 146/210 (70%), Gaps = 12/210 (5%)

Query  43   QILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVMQ  102
            Q++AL+  L+VLP LV+  +AF ++ +V+S+LR+ALG QQ PPN  + +LAL LT+F+M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  103  PT----LGTLYAEALSPFLDGRLAAEPAIERGGAIM-KEFLIANTRQNDLLMFSDLAG--  155
            P      + L  E LS   ++  A    I++ + +  ++FL  NT  +++  F+D+    
Sbjct  69   PVGLDVQARLQNEELS---NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNK  125

Query  156  -AGPYEDP-RDVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMAlgmmmls  213
             +  Y D+ +  ++  L+PAF  S+L+ AF+IG+LLFLPF+ ID+++++IL+A+GMMM+S
Sbjct  126  WPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVS  185

Query  214  pmlvslpFKLLLFVLVDGWALTVGSLAATY  243
            PM +SLPFKLL+FVLVDGW+L +G L ++Y
Sbjct  186  PMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

614) fliP in NC_006677


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  108 bits (391),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/207 (43%), Positives = 139/207 (68%), Gaps = 6/207 (2%)

Query  53   QLTALITVLSLAPSLLVMITAFTRIVIVLSLLRSALGAQGMPPNTVLIGLALFLTLFVMQ  112
            QL AL+ +LS+ P L+VM TAF ++ +V+SLLR+ALG Q +PPN  + GLAL LT+F+M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  113  PTLQKSWDAGIEPLMAGRVGEMEGLTAAAQ--PFHDFMAVTARPADVATFLNIAHEKPPA  170
            P          +  ++  +G +          P++DF+   +   +V+ F +I ++K P 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  171  KIGDT----PWRVLVPAFMIGELRRGFEMGFLLYLPFLVIDlvvssvlmslgmmmlppsT  226
            +  D+    +  +L+PAF +++L  +F +G+LL+LPF+ IDL+VS++L+++GMMM++P T
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  227  VSLPFKLIFFVVVDGWSLVAGSLVRSF  253
            +SLPFKL+ FV+VDGWSLV G LV S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

615) fliP in NC_011963


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 89/207 (43%), Positives = 144/207 (70%), Gaps = 6/207 (2%)

Query  46   QILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVMQ  105
            Q++AL+  L+VLP LV+  +AF ++ +V+S+LR+ALG QQ PPN  + +LAL LT+F+M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  106  PTLGALYEQSLSPFLDGQIEA-QPAIERGGAIM-KDFLIANTRQNDLLMFSDLAG---AG  160
            P    +  +  +  L  +I A    I++ + +  +DFL  NT  +++  F+D+     + 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  161  PYAEPTEV-PFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMAlgmmmlspml  219
             Y ++    ++  L+PAF  S+L+ AF+IG+LLFLPF+ ID+++++IL+A+GMMM+SPM 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  220  vslpFKLLLFVLVDGWALTVGSLAATY  246
            +SLPFKLL+FVLVDGW+L +G L ++Y
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

616) spaP in NC_003198


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  107 bits (389),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 92/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ ++AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

617) STBHUCCB_29360 in NC_016832


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  107 bits (389),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 92/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ ++AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

618) spaP in NC_021176


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  107 bits (389),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 92/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ ++AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

619) spaP in NC_004631


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  107 bits (389),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 92/222 (42%), Positives = 164/222 (74%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ ++AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFEN-A  118
            +F+M P+  D    +++E+++ NDI++L+ ++D+ +L  YRD+L + +D E V FF++  
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R +D +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

620) swp_5086 in NC_011566


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  107 bits (388),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 101/211 (48%), Positives = 154/211 (73%), Gaps = 14/211 (6%)

Query  41   EILALMTVLSFLPALLMMLTSFTRIIVVLAILRQALGLQQSPPNKVLIGIALVMTIFIMR  100
            +++AL+ +LS LP L++M T+F ++ VV+++LR+ALG+QQ PPN  + G+ALV+TIFIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  101  PVG---QAIYDEAFLPYDLGQIELTEAVVKAEVPLRKFMLAQTRETDLEQML---KIADE  154
            PVG   QA  ++  L+ D+G +   +   +A VP R F+    R+TD+EQ+     I ++
Sbjct  69   PVGLDVQARLQNEELSNDIGALA-HQIDQNALVPYRDFL---QRNTDIEQVTFFNDIVQN  124

Query  155  --PTTLTADEIP--FFVLMPAFVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmml  210
              P        P  +++LMPAF LS+L+ AF+IG+LLFLPF+ IDL+V+++L++MGMMM+
Sbjct  125  KWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  211  spliislpFKLMVFVLVDGWSMTVSTLVASY  241
            SP+ +SLPFKL+VFVLVDGWS+ ++ LV+SY
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

621) fliP in NC_010674


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  107 bits (388),  Expect = 8e-25, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 147/200 (74%), Gaps = 5/200 (2%)

Query  64   ILAVLPSIVIMLTSFTRIVIVFSFIKSAMGVQQAIPNQILTGLALFLTIFIMSPVYNEVN  123
            +L+VLP +V+M T+F ++ +VFS++++A+GVQQ  PN  + GLAL LTIFIM+PV  +V+
Sbjct  16   MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ  75

Query  124  TKAFQPYVEQSITQ--EEAIEIGSKPIKDFMLKQTREKDLELFVEINNVNKEELTRESV-  180
            ++  +  + + I    ++  + +  P +DF+ ++T   ++ +F +I + +  E  R+SV 
Sbjct  76   ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK  135

Query  181  --PFTTLIPAFAISELKTAFQMGFLIYLPFIVIDmvvasvlmsmgmmmlppamvSLPFKL  238
              ++  L+PAF++S+L+ AF++G+L++LPF+ ID++V+++L++MGMMM++P  +SLPFKL
Sbjct  136  PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  239  LLFVMVDGWYLLVKSLIMSF  258
            L+FV+VDGW L++  L+ S+
Sbjct  196  LVFVLVDGWSLVLGQLVGSY  215

622) fliP in NC_009901


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  106 bits (384),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 94/212 (45%), Positives = 155/212 (74%), Gaps = 16/212 (7%)

Query  41   EILALMTVLSFLPAMLMMLTSFTRIIVVLGILRQALGLQQSPPNKVLIGIALVMTIFIMR  100
            +++AL+ +LS LP +++M T+F ++ VV+++LR+ALG+QQ PPN  + G+ALV+TIFIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  101  PVGEEIYEKAFLPYDQ---GIIELPEAVERGE-KPLRQFMLAQTRETDLEQMLKIAD---  153
            PVG ++  +  L  ++   +I  L++ +++    P R+F+    R+TD+EQ+  + D   
Sbjct  69   PVGLDVQAR--LQNEELSNDIGALAHQIDQNALVPYRDFL---QRNTDIEQVTFFNDIVQ  123

Query  154  ----EPTTLTAEEIPFFVLMPAYVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmm  209
                E    +    ++++LMPA+ LS+L+ AF+IG+LLFLPF+ IDL+V+++L++MGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  210  lspliislpFKLMVFVLVDGWSMTVSTLVASY  241
            +SP+ +SLPFKL+VFVLVDGWS+ ++ LV+SY
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

623) fliP in NC_013949


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  106 bits (384),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 82/189 (44%), Positives = 134/189 (71%), Gaps = 8/189 (4%)

Query  65   TSFTRLVIVFSFLRTALGTQQSPPTQILVSLAMVLTFFIMEPV---VRESYQKAIVPYLD  121
            T+F +L +VFS+LR ALG QQ PP   + +LA+VLT+FIM PV   V+   Q+  ++   
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  122  AKISYETAFDRGVQPFKDFMLKNTREKDLALFYRIRKLENP----KTSADVSLTTLIPAF  177
            + ++ +   + ++ P++DF+ +NT   ++++F  I +   P     +    SL  L+PAF
Sbjct  88   GALAHQID-QNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAF  146

Query  178  MISELKTAFQIGFLLYLPFLVIDMVvssilmamgmmmlppvmiSLPFKILIFVLVDGFNL  237
             +S+L+ AF+IG+LL+LPF+ ID++VS+IL+AMGMMM++P+ +SLPFK+L+FVLVDG +L
Sbjct  147  TLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSL  206

Query  238  LIGNLVESF  246
            ++G+LV S+
Sbjct  207  VLGQLVGSY  215

624) fliP in NC_008347


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  106 bits (385),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 91/207 (44%), Positives = 148/207 (72%), Gaps = 6/207 (2%)

Query  47   QLMALLTVLSLAPSIIIMTTSFVRIIVVLSLLRTGLGLQQSPPNAVLVSLAIFMTGFIMA  106
            QL+ALL +LS+ P +++M T+F+++ VV+SLLR +LG+QQ PPN  + +LA+ +T FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  PVFTQSYDEGIQPLLNEEI-ELTEAFDLST-APLKTFMLSHVREDDLALFIDMSQ----E  160
            PV  +      +  L+++I  L++ +D ++  P + F+  +   +++++F D+ Q    E
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  161  AVPESPEATSFWIVAPAFMISELRRAfeigfllfipfliidlVVASILMSMGMMMLPPIV  220
               +S  + S+ I+ PAF +S+L  AF IG+LLF+PF+ IDL+V++IL++MGMMM++P+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  221  ISLPFKLIFFVLVDGWRLVVGSLVQSF  247
            +SLPFKL+ FVLVDGW LV+G LV S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

625) fliP in NC_006840


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  106 bits (385),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 87/209 (42%), Positives = 152/209 (73%), Gaps = 11/209 (5%)

Query  88   QILGLMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIAMFLTFFIMA  147
            Q+++L+ ML+ LP +V++ T+F ++ VV S+LR+A+G+QQ P+N  I G+A+ LT+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  148  PVFDKVNNTAIQPYINEEITA--REAFDVAQVPMKEFMLAQTRVKDLETFVNMSGV----  201
            PV   V+    +  ++++I A  ++  + A VP ++F+  +T + ++  F ++       
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  202  ---EAENPEDVPITVVIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmlsp  258
               ++ +P+  ++ +++PAF  S+L+ AF+IG++LFLPF+ IDL+V+++L+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  259  mIVSLPFKLMLFVLVDGWNLILSTLAGSF  287
            M +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

626) fliP in NC_011184


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  106 bits (385),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 87/209 (42%), Positives = 152/209 (73%), Gaps = 11/209 (5%)

Query  88   QILGLMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIAMFLTFFIMA  147
            Q+++L+ ML+ LP +V++ T+F ++ VV S+LR+A+G+QQ P+N  I G+A+ LT+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  148  PVFDKVNNTAIQPYINEEITA--REAFDVAQVPMKEFMLAQTRVKDLETFVNMSGV----  201
            PV   V+    +  ++++I A  ++  + A VP ++F+  +T + ++  F ++       
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  202  ---EAENPEDVPITVVIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmlsp  258
               ++ +P+  ++ +++PAF  S+L+ AF+IG++LFLPF+ IDL+V+++L+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  259  mIVSLPFKLMLFVLVDGWNLILSTLAGSF  287
            M +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

627) fliP in NC_017831


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  106 bits (386),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 83/203 (41%), Positives = 142/203 (70%), Gaps = 6/203 (2%)

Query  56   LLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPV-L  114
            LL MLS LP +++M T+F ++ +V+SLLR+A+G    PPN  + GLAL LT+F+M+PV L
Sbjct  13   LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGL  72

Query  115  DRAYNDAYKPFSEGTLQMDQAVQRGT-APFKAFMLKQTRETDLALFAKISKAA-PMQGPE  172
            D         +S++   + + +++ +  P++ F+ ++T   ++++F  I +   P +  +
Sbjct  73   DVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  173  DV---PLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDmvvasvlmsmgmmmvsPATVSLP  229
             V   +L +L+PAF  S+L+ +F+IG+ +F+PF+ ID++V+++L++MGMMMVSP T+SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  230  FKLMLFVLVDGWQLLIGSLAQSF  252
            FKL++FVLVDGW L++G L  S+
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSY  215

628) fliP in NC_007434


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  106 bits (386),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 83/203 (41%), Positives = 142/203 (70%), Gaps = 6/203 (2%)

Query  56   LLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPV-L  114
            LL MLS LP +++M T+F ++ +V+SLLR+A+G    PPN  + GLAL LT+F+M+PV L
Sbjct  13   LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGL  72

Query  115  DRAYNDAYKPFSEGTLQMDQAVQRGT-APFKAFMLKQTRETDLALFAKISKAA-PMQGPE  172
            D         +S++   + + +++ +  P++ F+ ++T   ++++F  I +   P +  +
Sbjct  73   DVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  173  DV---PLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDmvvasvlmsmgmmmvsPATVSLP  229
             V   +L +L+PAF  S+L+ +F+IG+ +F+PF+ ID++V+++L++MGMMMVSP T+SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  230  FKLMLFVLVDGWQLLIGSLAQSF  252
            FKL++FVLVDGW L++G L  S+
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSY  215

629) fliP in NC_006350


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  106 bits (384),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 82/203 (41%), Positives = 142/203 (70%), Gaps = 6/203 (2%)

Query  56   LLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPSQVLVGLALFLTLFVMSPV-L  114
            LL MLS LP +++M T+F ++ +V+SLLR+A+G    PP+  + GLAL LT+F+M+PV L
Sbjct  13   LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGL  72

Query  115  DRAYNDAYKPFSEGTLQMDQAVQRGT-APFKAFMLKQTRETDLALFAKISKAA-PMQGPE  172
            D         +S++   + + +++ +  P++ F+ ++T   ++++F  I +   P +  +
Sbjct  73   DVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  173  DV---PLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDmvvasvlmsmgmmmvsPATVSLP  229
             V   +L +L+PAF  S+L+ +F+IG+ +F+PF+ ID++V+++L++MGMMMVSP T+SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  230  FKLMLFVLVDGWQLLIGSLAQSF  252
            FKL++FVLVDGW L++G L  S+
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSY  215

630) fliP in NC_021884


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  106 bits (386),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 83/203 (41%), Positives = 142/203 (70%), Gaps = 6/203 (2%)

Query  56   LLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPV-L  114
            LL MLS LP +++M T+F ++ +V+SLLR+A+G    PPN  + GLAL LT+F+M+PV L
Sbjct  13   LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGL  72

Query  115  DRAYNDAYKPFSEGTLQMDQAVQRGT-APFKAFMLKQTRETDLALFAKISKAA-PMQGPE  172
            D         +S++   + + +++ +  P++ F+ ++T   ++++F  I +   P +  +
Sbjct  73   DVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  173  DV---PLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDmvvasvlmsmgmmmvsPATVSLP  229
             V   +L +L+PAF  S+L+ +F+IG+ +F+PF+ ID++V+++L++MGMMMVSP T+SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  230  FKLMLFVLVDGWQLLIGSLAQSF  252
            FKL++FVLVDGW L++G L  S+
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSY  215

631) fliP in NC_011769


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  106 bits (387),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 85/209 (41%), Positives = 153/209 (74%), Gaps = 9/209 (4%)

Query  89   LLEILFMLTVLSLAPAIMLTVTSFTRIIIVFHFIRQALGVQQLPPSQVLASLAIFMTVVI  148
            L+ +LFML+VL+L   +++  T+F ++ +VF ++R+ALGVQQ+PP+  + +LA+ +T+ I
Sbjct  10   LIALLFMLSVLPL---LVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFI  66

Query  149  MMPVGKQINDTALQPYLEERIG-FNEALD-KAQVPLRSFMFKHTREKDLSIFYAITKMEQ  206
            M PVG +++    +  L + IG + + +D +A VP R F+ ++T   ++++F  I +   
Sbjct  67   MAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  207  P-RTKEEV---PTVMLAAAYVISELKTGFTIGFLIYIPFLVLDMVVSSIllamgmmmlpp  262
            P R ++ V   + ++L +A+ +S+L+ +F IG+L+++PF+ +D++VS+ILLAMGMMM++P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  263  mmvsmpFKLLLFVMVDGWALLVGSLVNSF  291
            M +S+PFKLL+FV+VDGW+L++G LV S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

632) spaP in NC_015761


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  106 bits (387),  Expect = 8e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 162/222 (73%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEGVSFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFES-A  118
            +F+M P+  D    +++E +S NDI++L+ ++D+ +L  YRD+L + +D E V FF+   
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKEEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R ++ +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

633) A464_2914 in NC_021870


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  106 bits (387),  Expect = 8e-25, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 162/222 (73%), Gaps = 11/222 (4%)

Query  1    MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS  60
            + +   LIALL   ++LP+++  GT F+K+S+VF ++RNALG+QQ+P+N+++ G+AL+L+
Sbjct  4    LNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLT  63

Query  61   MFVMWPIMHDAYVYFEDEGVSFNDISSLSKHVDE-GLDGYRDYLIKYSDRELVQFFES-A  118
            +F+M P+  D    +++E +S NDI++L+ ++D+ +L  YRD+L + +D E V FF+   
Sbjct  64   IFIMAPVGLDVQARLQNEELS-NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  119  QLKRQYGEETETVKRDKEEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvss  178
            Q K+          R ++ +   S++ L+PA++LS+++ AFKIG+ L+LPFV +DL+VS+
Sbjct  123  QNKWP--------ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  179  vllalgmmmmsPVTISTPIKLVLFVALDGWTLLSKGLILQYM  220
            +LLA+GMMM+SP+T+S P+KL++FV +DGW+L+   L+  Y+
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

634) fliP in NC_021173


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  106 bits (387),  Expect = 9e-25, Method: Compositional matrix adjust.
 Identities = 85/203 (42%), Positives = 142/203 (70%), Gaps = 6/203 (2%)

Query  56   LLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTASTPPNQVLVGLALFLTLFVMSPV-L  114
            LL MLS LP +++M T+F ++ +V+SLLR+ALG    PPN  + GLAL LT+F+M+PV L
Sbjct  13   LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGL  72

Query  115  DRAYADAYKPFSEGTLQMDQAVQRGA-APFKTFMLKQTRETDLALFAKISKAA-PMQGPE  172
            D         +S++   + + +++ A  P++ F+ ++T   ++++F  I +   P +  +
Sbjct  73   DVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  173  DV---PLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDmvvasvlmsmgmmmvsPATVSLP  229
             V   +L +L+PAF  S+L+ +F+IG+ +F+PF+ ID++V+++L++MGMMMVSP T+SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  230  FKLMLFVLVDGWQLLIGSLAQSF  252
            FKL++FVLVDGW L++G L  S+
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSY  215

635) Sulku_1113 in NC_014762


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  105 bits (382),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 142/190 (75%), Gaps = 12/190 (6%)

Query  62   TTFTRFVIVFGFLRQALGTQQVPPTQLLVMLALILTVFVMEPVA----TKAYDEGIKPYS  117
            T+F ++ +VF++LR+ALG QQVPP   +  LAL+LT+F+M PV+    ++  +E +   S
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEEL---S  84

Query  118  EEKITYDEAFEKTT-EPFKNFMVRNTREKDLALFLRIRHMQNPQ----SIKEVPLTIVIP  172
            ++  +  + +++ +  P+++F+ RNT   ++++F  I + + P+    S+K  +L I++P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  173  AFMISELKTAFEIGFLLFLPFLVIDMVVAsilmsmgmmmlppvmismpFKILVFVMVDGW  232
            AF +S+L+ AF IG+LLFLPF+ ID++V++IL++MGMMM++P+ +S+PFK+LVFV+VDGW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  233  NLLIGNLIAS  242
            +L++G+L++S
Sbjct  205  SLVLGQLVGS  214

636) fliP in NC_007899


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  105 bits (383),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 88/218 (41%), Positives = 149/218 (69%), Gaps = 14/218 (6%)

Query  90   QAIILIF-LALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMF  148
            Q I L+F L++ P+LV++ T++LK+ + + LLRNALGVQQ PP+  + G+AL+L+I++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  149  PTGVAMYNDARKEIQGNAIPRDL--FSAEGAETVFVALNKSKEPLRSFLIRNTPKSQIQS  206
            P G+    D +  +Q + ++ D+  ++ +  +  +V       P R FL RNT   Q+  
Sbjct  69   PVGL----DVQARLQNEELSNDIGALAHQIDQNALV-------PYRDFLQRNTDIEQVTF  117

Query  207  FYKISQKTFPPEIREHLTVSDFVIIVPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLV  266
            F  I Q+  P   R+ +    ++I++PAF ++Q+++AF IG+L++LPF  IDL+ +N+L+
Sbjct  118  FNDIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILL  177

Query  267  AMQmmmlsplsislplklllvvmvDGWTLLLQGLMISF  304
            AM MMM+SP+++SLP+KLL+ V+VDGW+L+L  L+ S+
Sbjct  178  AMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

637) fliP in NC_007517


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  105 bits (381),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 85/209 (41%), Positives = 154/209 (74%), Gaps = 9/209 (4%)

Query  47   VLQIFFLMTVLSLAPGLMMMTTSFTRIVIVLSFLRNAIGTQQSPPNQIIVALSLFLTFFV  106
            ++ ++F+++VL+L   L++M T+F ++ +V+S+LRNA+G QQ PPN  I +L+L LT+F+
Sbjct  10   LIALLFMLSVLPL---LVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFI  66

Query  107  MSPVWQQVNTQAIQPYRAAQITQ--EEAFRRAQVPVRKFMFSQTREKDLALFINLSKLQR  164
            M+PV  +V+++  +   + +I    ++  + A VP R F+  +T   ++++F ++ + ++
Sbjct  67   MAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  165  P-RNADDI---PTLTLIPAFMISELRTAFQIGFLIFIPFLVIDmvvasvlmsmgmmmlpp  220
            P R  D +   + L L+PAF +S+L  AF+IG+L+F+PF+ ID++V+++L++MGMMM++P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  221  vmISLPFKILLFVLVDGWGLVIGSLVKSF  249
            + +SLPFK+L+FVLVDGW+LV+G LV S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

638) fliP in NC_010995


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  105 bits (382),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 86/208 (42%), Positives = 151/208 (73%), Gaps = 8/208 (3%)

Query  77   QILALMTALSFLPAILMMMTSFTRIIIVFSILRQALGLQQSPSNQILIGLALFLTLFIMK  136
            Q++AL+  LS LP +++M T+F ++ +VFS+LR+ALG+QQ P+N  + GLAL LT+FIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  137  PVFDQANHDALQPY-INGQISA--QEALAKTAAPFHRFMLAQTRESDILLFVGIAKHP-P  192
            PV +   +  LQ   ++ +I+A  ++   ++  P++ F+  +T   ++ +F +I ++  P
Sbjct  69   PV-GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  193  IATPEDI---PFTILAPAFIISELKTAfqigfiifipfliidiVVSSVLMAMGMMMLSPL  249
                + +   ++ IL PAF +S+L+ AF+IG+++F+PF+ ID++VS++L+AMGMMM+SP+
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  250  IISLPFKIMLFVLVDGWAMIVGTLAASY  277
             +SLPFK+++FVLVDGW++++G L +SY
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

639) fliP in NC_010520


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  105 bits (380),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 81/195 (42%), Positives = 139/195 (72%), Gaps = 6/195 (3%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQ  128
            P ++VM T+F++  VVF++LRNA+G QQ PPN  + GLAL LT+FIM PV  +++++  +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  129  PYMKNKITQ--EQAVETGAKPLRQFMLKQTRQKDLKLFVDLAKPN----FKVTKDNAPLY  182
              + N I    +Q  + +  P R+F+ ++T   ++ +F D+ + +    ++ +    +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  183  IVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVM  242
            I++PAF +S+L+ AF+IG+LLF+PF+ IDL+V+++L++MGM M++P+ +SLPFKLL+FV+
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  243  VDGWYLLVKSLVMSF  257
            VDGW L++  LV S+
Sbjct  201  VDGWSLVLGQLVGSY  215

640) fliP in NC_011312


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  105 bits (381),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 84/207 (41%), Positives = 149/207 (72%), Gaps = 7/207 (3%)

Query  88   QILGLMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIAMFLTFFIMA  147
            Q+++L+ ML+ LP +V++ T+F ++ VV S+LR+A+G+QQ P+N  I G+A+ LT+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  148  PVFDKVNETAIQPYIGEEITA--REAFDAAQIPMKEFMLAQTRVKDLETFVNMSGVE---  202
            PV   V+    +  ++++I A  ++  + A +P ++F+  +T + ++  F ++       
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  203  --VENPEDVPITVVIPAFITSELKTAFQMGFMLFLPFLIIDlvvasvlmamgmmmlspmI  260
               ++    ++ +++PAF  S+L+ AF++G++LFLPF+ IDL+V+++L+AMGMMM+SPM 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  261  VSLPFKLMLFVLVDGWNLILSTLAGSF  287
            +SLPFKL++FVLVDGW+L+L+ L GS+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

641) BN341_p1310 in NC_019674


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  104 bits (378),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 79/188 (43%), Positives = 137/188 (73%), Gaps = 6/188 (3%)

Query  65   TSFIRLIVVFSFLRTALGTQQTPPTQILVSLALILTFFIMEPAAKKSYDTAIKPYLAEKI  124
            T+F++L VVFS+LR ALG QQ PP   + +LAL+LT+FIM P +        +  L++ I
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  125  S-YTEAFE-VGIVPFKEFMLQNTREKDLALFFRIRHLENP----KTPSAVPLTVLVPAFM  178
            +  ++ ++  ++VP+++F+ +NT   ++++F  I +   P     +  + +L +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  179  ISELKTGFQIGFLLYLPFLVIDMVvssilmamgmmmlppvmiSLPFKILVFILVDGFNLL  238
            +S+L+ +F+IG+LL+LPF+ ID++VS+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  239  VENLVASF  246
            + +LV+S+
Sbjct  208  LGQLVGSY  215

642) fliP in NC_021150


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  104 bits (378),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 75/187 (41%), Positives = 128/187 (69%), Gaps = 12/187 (6%)

Query  73   RIIIVLGLLRTAIGTPAAPPNQVllglalfltlFIMSPV---LDRTYQSAWLPFSRDEIG  129
            ++ +V++LLR A+G    PPN  + GLAL LT+FIM+PV   ++   Q+  L+   + ++
Sbjct  32   KLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIGALA  91

Query  130  FEQFLETGSQPFREFMLAQTRESDLALFARL------ARLGELEGPEQVPLRVLMPAFVT  183
             +Q+ + +  P+R+F+  +T   ++++F  +       R  +   P+  +L +LMPAF  
Sbjct  92   -HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPD--SLLILMPAFTL  148

Query  184  SELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLI  243
            S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+SLPFKL++FVLVDGW L++
Sbjct  149  SQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVL  208

Query  244  GSLAQSF  250
            G L  S+
Sbjct  209  GQLVGSY  215

643) fliP in NC_021149


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  104 bits (378),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 75/187 (41%), Positives = 128/187 (69%), Gaps = 12/187 (6%)

Query  73   RIIIVLGLLRTAIGTPAAPPNQVllglalfltlFIMSPV---LDRTYQSAWLPFSRDEIG  129
            ++ +V++LLR A+G    PPN  + GLAL LT+FIM+PV   ++   Q+  L+   + ++
Sbjct  32   KLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIGALA  91

Query  130  FEQFLETGSQPFREFMLAQTRESDLALFARL------ARLGELEGPEQVPLRVLMPAFVT  183
             +Q+ + +  P+R+F+  +T   ++++F  +       R  +   P+  +L +LMPAF  
Sbjct  92   -HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPD--SLLILMPAFTL  148

Query  184  SELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLI  243
            S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+SLPFKL++FVLVDGW L++
Sbjct  149  SQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVL  208

Query  244  GSLAQSF  250
            G L  S+
Sbjct  209  GQLVGSY  215

644) fliP in NC_012560


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  104 bits (378),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 75/187 (41%), Positives = 128/187 (69%), Gaps = 12/187 (6%)

Query  73   RIIIVLGLLRTAIGTPAAPPNQVllglalfltlFIMSPV---LDRTYQSAWLPFSRDEIG  129
            ++ +V++LLR A+G    PPN  + GLAL LT+FIM+PV   ++   Q+  L+   + ++
Sbjct  32   KLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIGALA  91

Query  130  FEQFLETGSQPFREFMLAQTRESDLALFARL------ARLGELEGPEQVPLRVLMPAFVT  183
             +Q+ + +  P+R+F+  +T   ++++F  +       R  +   P+  +L +LMPAF  
Sbjct  92   -HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPD--SLLILMPAFTL  148

Query  184  SELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLI  243
            S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+SLPFKL++FVLVDGW L++
Sbjct  149  SQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVL  208

Query  244  GSLAQSF  250
            G L  S+
Sbjct  209  GQLVGSY  215

645) B649_04650 in NC_020505


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  104 bits (377),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 78/187 (42%), Positives = 135/187 (73%), Gaps = 6/187 (3%)

Query  62   TTFTRFVIVFGFLRQALGTQQVPPTQLLVMLALILTVFVMEPVATKAYEE-GIKPYSEEK  120
            T+F ++ +VF++LR+ALG QQVPP   +  LAL+LT+F+M PV+            S++ 
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  121  ITYDEAFEKTT-EPFKSFMVRNTREKDLALFLRIRHMENPQ----SIKEVPLTIVIPAFM  175
             +  + +++ +  P++ F+ RNT   ++++F  I +   P+    S+K  +L I++PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  176  ISELKTAFEIGFLLFLPFLVIDMVVAsilmsmgmmmlppvmismpFKILVFVMVDGWNLL  235
            +S+L+ AF IG+LLFLPF+ ID++V++IL++MGMMM++P+ +S+PFK+LVFV+VDGW+L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  236  IGNLIAS  242
            +G+L++S
Sbjct  208  LGQLVGS  214

646) Mmol_0937 in NC_012968


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  104 bits (378),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 140/199 (71%), Gaps = 14/199 (7%)

Query  62   PAIVLMMTGFTRIIIVLSLLRQALGTQSVPPNQVMIGLALFLTFFVMSPVIDKIYVDAYK  121
            P +V+M T+F ++ +V+SLLR+ALG Q VPPN  + GLAL LT+F+M+PV     +D   
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVG----LDVQA  76

Query  122  PLSENQIS------MQEAMDKGVAPLKEFMLKQTREGDLALFVKMAEV---EKI-ESPDQ  171
             L ++++S       ++  ++++ P ++F+ ++T   ++++F  + +    E+  +S   
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  172  VPLKVLVPAFVTSELKTAFQIGFAIFIPFLIIDmvvasvlmsmgmmmvsPAIVALPFKLM  231
             +L +L+PAF  S+L+ AF+IG+ +F+PF+ ID++V+++L++MGMMMVSP  ++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  232  LFVLVDGWQLILGSLVESF  250
            +FVLVDGW L+LG LV S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

647) Rahaq2_2559 in NC_016818


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  104 bits (377),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 77/187 (42%), Positives = 132/187 (71%), Gaps = 6/187 (3%)

Query  78   SFTRIIIVLGLLRNALGTPSAPPNQVllglglfltffVMAPV-FDKIYSDAYQPFSENKI  136
            +F ++ +V++LLRNALG    PPN  + GL+L LT+F+MAPV +D       + +S++  
Sbjct  29   AFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIG  88

Query  137  TMQEAMDKGA-QPLRQFMLRQTRESDLALYARLANIP-PLAGPEAV---PMRILLPAYVT  191
            ++ + +D+ A  P R+F+ R+T   +++++  + +   P    ++V   ++ IL+PA+  
Sbjct  89   ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTL  148

Query  192  SELKTAFQIGFTVFIPFMIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLL  251
            S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+SLPFKL++FVLVDGW L+L
Sbjct  149  SQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVL  208

Query  252  GSLAQSF  258
            G L  S+
Sbjct  209  GQLVGSY  215

648) fliP in NC_017047


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  104 bits (377),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 77/187 (42%), Positives = 132/187 (71%), Gaps = 6/187 (3%)

Query  78   SFTRIIIVLGLLRNALGTPSAPPNQVllglglfltffVMAPV-FDKIYSDAYQPFSENKI  136
            +F ++ +V++LLRNALG    PPN  + GL+L LT+F+MAPV +D       + +S++  
Sbjct  29   AFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIG  88

Query  137  TMQEAMDKGA-QPLRQFMLRQTRESDLALYARLANIP-PLAGPEAV---PMRILLPAYVT  191
            ++ + +D+ A  P R+F+ R+T   +++++  + +   P    ++V   ++ IL+PA+  
Sbjct  89   ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTL  148

Query  192  SELKTAFQIGFTVFIPFMIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLL  251
            S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+SLPFKL++FVLVDGW L+L
Sbjct  149  SQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVL  208

Query  252  GSLAQSF  258
            G L  S+
Sbjct  209  GQLVGSY  215

649) Rahaq_2499 in NC_015061


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  104 bits (377),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 77/187 (42%), Positives = 132/187 (71%), Gaps = 6/187 (3%)

Query  78   SFTRIIIVLGLLRNALGTPSAPPNQVllglglfltffVMAPV-FDKIYSDAYQPFSENKI  136
            +F ++ +V++LLRNALG    PPN  + GL+L LT+F+MAPV +D       + +S++  
Sbjct  29   AFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIG  88

Query  137  TMQEAMDKGA-QPLRQFMLRQTRESDLALYARLANIP-PLAGPEAV---PMRILLPAYVT  191
            ++ + +D+ A  P R+F+ R+T   +++++  + +   P    ++V   ++ IL+PA+  
Sbjct  89   ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTL  148

Query  192  SELKTAFQIGFTVFIPFMIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLL  251
            S+L+ AF+IG+ +F+PF+ IDL+V+++L+A+GMMMV+P T+SLPFKL++FVLVDGW L+L
Sbjct  149  SQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVL  208

Query  252  GSLAQSF  258
            G L  S+
Sbjct  209  GQLVGSY  215

650) Celgi_0475 in NC_015671


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  104 bits (377),  Expect = 7e-24, Method: Compositional matrix adjust.
 Identities = 88/200 (44%), Positives = 142/200 (71%), Gaps = 6/200 (3%)

Query  83   LLSVAPALLLMMTSFTKIFVVLAFTRNALGLQGVPPNQVLAGLALFLSMFVMAPVLGDVN  142
            +LSV P L++M T+F K+ VV+++ RNALG+Q VPPN  + GLAL L++F+MAPV  DV+
Sbjct  16   MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ  75

Query  143  ADAVQPYLDGEL-TFSQAVDVGS-GPLRSFMLDHTREQDLALLTRAADQPNPAT-PEDV-  198
            A   +  L  ++ ++++ +D  +  P R F+  +T  ++++++    ++  P    + V 
Sbjct  76   ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK  135

Query  199  --PLATLIPAFLLSELRSAFIMGFVIFVPFLVIDLVVSavlmamgmmmlppvmISLPFKV  256
              +L  L+PAF LS+L  AF +G+++F+PF+ IDL+VS +L+AMGMMM++P+ +SLPFK+
Sbjct  136  PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  257  LLFVLVDGWGLVVTSLVRSY  276
            L+FVLVDGW+LV+  LV SY
Sbjct  196  LVFVLVDGWSLVLGQLVGSY  215

651) Celf_0690 in NC_015514


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 86/200 (43%), Positives = 142/200 (71%), Gaps = 6/200 (3%)

Query  43   LLSVAPALILMTTSFTKIFVVLSFTRNALGLQGVPPNQVLAGLALFLSLFVMAPVVSDIN  102
            +LSV P L++M T+F K+ VV+S+ RNALG+Q VPPN  + GLAL L++F+MAPV  D++
Sbjct  16   MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ  75

Query  103  SVGVQPYLDGSL-TFSQAVDVGS-GPLREFMLGQTREQDLALLTRAADQENPAS-PEDV-  158
            +   +  L   + ++++ +D  +  P R+F+  +T  ++++++    ++  P    + V 
Sbjct  76   ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK  135

Query  159  --PFATLVPAFLLSELRSAFIMGFVIFVPFLVIDlvvsaslmsmgmmmlppvmISLPFKI  216
              ++  L+PAF LS+L  AF +G+++F+PF+ IDL+VS  L++MGMMM++P+ +SLPFK+
Sbjct  136  PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  217  LLFVLVDGWGLVVTSLVGSY  236
            L+FVLVDGW+LV+  LVGSY
Sbjct  196  LVFVLVDGWSLVLGQLVGSY  215

652) PP1Y_AT34509 in NC_015580


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 85/202 (43%), Positives = 149/202 (74%), Gaps = 10/202 (4%)

Query  3    LLTILPSLILMMTSFTRILVVLAILRQALGLQQSPPNQVLIGLSLFLSLFVMAPT-LE--  59
            +L++LP L++M T+F ++ VV+++LR+ALG+QQ PPN  + GL+L L++F+MAP  L+  
Sbjct  16   MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ  75

Query  60   -RVNANAIAPYSAGTINAEQAIANGGKEFHAFMIRQTRERDLTMFAEMAN---APRFAKP  115
             R++ + ++    G++ A+Q   N+   ++ F+ R+T   ++T F ++ +   + R+  +
Sbjct  76   ARLQNEELSN-DIGAL-AHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDS  133

Query  116  ADV-PFSILLPAFVTSELKTAFQIGFMLFLPFlvidlvvssvlmslgmmmmspmvvslPF  174
                ++ IL+PAF  S+L+ AF+IG++LFLPF+ IDL+VS++L+++GMMM+SPM +SLPF
Sbjct  134  VKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF  193

Query  175  KLLLFVMVDGWALLMGSLASSF  196
            KLL+FV+VDGW+L++G L +S+
Sbjct  194  KLLVFVLVDGWSLVLGQLVGSY  215

653) fliP in NC_020802


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (374),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 87/207 (43%), Positives = 146/207 (71%), Gaps = 7/207 (3%)

Query  47   QVLAFMTALSFLPAMLVLMTSFTRIVVVMSILRQALGLQQTPSNQVINGIALFLTFFIMT  106
            Q++A++  LS LP ++V+ T+F ++ VV S+LR+ALG+QQ P+N  I G+AL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  PVFDKINEEALQPYLNEDMN-IVQAIEQGK-KPLMAFMLAQTRLKDLETFLEIANVQ---  161
            PV   ++    +  L++D+  + + I+Q    P   F+  +T + ++  F +I + +   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  162  --VDTPEEVPFTVLIPAFVTSELKTAFQIGFMIFIPFLIIDLVVasilmamgmmmlspmi  219
               D+    ++ +L+PAF  S+L+ AF+IG+++F+PF+ IDL+V++IL+AMGMMM+SPM 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  220  VSLPFKLMLFVLVDGWNLIMGSLANSF  246
            +SLPFKL++FVLVDGW+L++G L  S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

654) Sked_31060 in NC_013521


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (373),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 85/200 (43%), Positives = 138/200 (69%), Gaps = 6/200 (3%)

Query  89   LLSVAPSLLLMMTSFTKIFVVLALTRNALGLQGVPPNQVLAGLALFLSLFIMAPIIGQVN  148
            +LSV P L++M T+F K+ VV++L RNALG+Q VPPN  + GLAL L++FIMAP+  +V+
Sbjct  16   MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ  75

Query  149  E-LGVQPYVNGGLDFGAAVEAGS-APLREFMLGQTREEDIALMTRAADQPNP----TDPS  202
              L  +   N+   ++  ++  +  P R+F+  +T  E++++     ++  P        
Sbjct  76   ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK  135

Query  203  TVPMLTLIPSFMLSELRAAFIIGFVIFIPFLVIDlvvsaslmsmgmmmlppvmISLPFKI  262
              ++L L+P+F LS+L  AF IG+++F+PF+ IDL+VS  L++MGMMM++P+ +SLPFK+
Sbjct  136  PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  263  LLFVLVDGWGMIVTALVGSY  282
            L+FVLVDGW++++  LVGSY
Sbjct  196  LVFVLVDGWSLVLGQLVGSY  215

655) MYA_0034 in NC_017920


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 87/215 (41%), Positives = 148/215 (69%), Gaps = 10/215 (4%)

Query  44   GTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLLGLAM  103
             ++Y L      LL MLS LP +++M T+F ++ +V+SLLR+ALG    PPN  + GLA+
Sbjct  5    NSSYQLIA----LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  104  FLTFFVMSPV-LDKAYNDGYKPFSDGSLPMEQAV-QRGVAPFKGFMLKQTRETDLALFAK  161
             LT+F+M+PV LD         +S++  ++ + + Q ++ P+++F+ ++T   ++++F  
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  162  ISKAA-PMQGPEDV---PLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDLvvasvlmsmg  217
            I +   P +  + V   +L +L+PAF  S+L+ +F+IG+ +F+PF+ IDL+V+++L++MG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  218  mmmvspstvsLPFKLMLFVLVDGWQLLIGSLAQSF  252
            MMMVSP T+SLPFKL++FVLVDGW L++G L  S+
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

656) fliP in NC_010084


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 88/215 (41%), Positives = 148/215 (69%), Gaps = 10/215 (4%)

Query  44   GTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLAL  103
             ++Y L      LL MLS LP +V+M T+F ++ +V+SLLR+ALG    PPN  + GLAL
Sbjct  5    NSSYQLIA----LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  104  FLTFFVMSPV-LDRAYTDGYKPFSDGTLPMEQAV-QRGVAPFKGFMLKQTRETDLALFAK  161
             LT+F+M+PV LD         +S++  ++ + + Q ++ P+++F+ ++T   ++++F  
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  162  ISKAA-PMQGPEDV---PLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDmvvasvlmsmg  217
            I +   P +  + V   +L +L+PAF  S+L+ +F+IG+ +F+PF+ ID++V+++L++MG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  218  mmmvspstvsLPFKLMLFVLVDGWQLLIGSLAQSF  252
            MMMVSP T+SLPFKL++FVLVDGW L++G L  S+
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

657) fliP in NC_010804


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 88/215 (41%), Positives = 148/215 (69%), Gaps = 10/215 (4%)

Query  44   GTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLAL  103
             ++Y L      LL MLS LP +V+M T+F ++ +V+SLLR+ALG    PPN  + GLAL
Sbjct  5    NSSYQLIA----LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  104  FLTFFVMSPV-LDRAYTDGYKPFSDGTLPMEQAV-QRGVAPFKGFMLKQTRETDLALFAK  161
             LT+F+M+PV LD         +S++  ++ + + Q ++ P+++F+ ++T   ++++F  
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  162  ISKAA-PMQGPEDV---PLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDmvvasvlmsmg  217
            I +   P +  + V   +L +L+PAF  S+L+ +F+IG+ +F+PF+ ID++V+++L++MG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  218  mmmvspstvsLPFKLMLFVLVDGWQLLIGSLAQSF  252
            MMMVSP T+SLPFKL++FVLVDGW L++G L  S+
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

658) fliP in NC_009256


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 87/215 (41%), Positives = 148/215 (69%), Gaps = 10/215 (4%)

Query  44   GTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLLGLAM  103
             ++Y L      LL MLS LP +++M T+F ++ +V+SLLR+ALG    PPN  + GLA+
Sbjct  5    NSSYQLIA----LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  104  FLTFFVMSPV-LDKAYNDGYKPFSDGSLPMEQAV-QRGVAPFKGFMLKQTRETDLALFAK  161
             LT+F+M+PV LD         +S++  ++ + + Q ++ P+++F+ ++T   ++++F  
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  162  ISKAA-PMQGPEDV---PLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDLvvasvlmsmg  217
            I +   P +  + V   +L +L+PAF  S+L+ +F+IG+ +F+PF+ IDL+V+++L++MG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  218  mmmvspstvsLPFKLMLFVLVDGWQLLIGSLAQSF  252
            MMMVSP T+SLPFKL++FVLVDGW L++G L  S+
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

659) B595_1074 in NC_018619


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (373),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 136/199 (69%), Gaps = 13/199 (6%)

Query  5    TSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYNDARKEIQGNAI  64
            T++LK+ + + LLRNALGVQQ PP+  + G+AL+L+I++M P G+    D +  +Q + +
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGL----DVQARLQNEEL  83

Query  65   PRDL--FSAEGAETVFVALNKSKEPLRSFLIRNTPKSQIQSFYKISQKTFPPEIREHMTA  122
            + D+  ++ +  +  +V       P R FL RNT   Q+  F  I Q+  P   R+ + +
Sbjct  84   SNDIGALAHQIDQNALV-------PYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  123  SDFVIVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQmmmlsplsislplkll  182
              ++I++PAF ++Q+++AF IG+L++LPF  IDL+ +N+L+AM MMM+SP+++SLP+KLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  183  lvvmvDGWTLLLQGLMISF  201
            + V+VDGW+L+L  L+ S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

660) B600_1069 in NC_018621


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (373),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 136/199 (69%), Gaps = 13/199 (6%)

Query  5    TSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYNDARKEIQGNAI  64
            T++LK+ + + LLRNALGVQQ PP+  + G+AL+L+I++M P G+    D +  +Q + +
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGL----DVQARLQNEEL  83

Query  65   PRDL--FSAEGAETVFVALNKSKEPLRSFLIRNTPKSQIQSFYKISQKTFPPEIREHMTA  122
            + D+  ++ +  +  +V       P R FL RNT   Q+  F  I Q+  P   R+ + +
Sbjct  84   SNDIGALAHQIDQNALV-------PYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  123  SDFVIVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQmmmlsplsislplkll  182
              ++I++PAF ++Q+++AF IG+L++LPF  IDL+ +N+L+AM MMM+SP+++SLP+KLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  183  lvvmvDGWTLLLQGLMISF  201
            + V+VDGW+L+L  L+ S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

661) B711_1071 in NC_018625


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (373),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 136/199 (69%), Gaps = 13/199 (6%)

Query  5    TSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYNDARKEIQGNAI  64
            T++LK+ + + LLRNALGVQQ PP+  + G+AL+L+I++M P G+    D +  +Q + +
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGL----DVQARLQNEEL  83

Query  65   PRDL--FSAEGAETVFVALNKSKEPLRSFLIRNTPKSQIQSFYKISQKTFPPEIREHMTA  122
            + D+  ++ +  +  +V       P R FL RNT   Q+  F  I Q+  P   R+ + +
Sbjct  84   SNDIGALAHQIDQNALV-------PYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  123  SDFVIVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQmmmlsplsislplkll  182
              ++I++PAF ++Q+++AF IG+L++LPF  IDL+ +N+L+AM MMM+SP+++SLP+KLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  183  lvvmvDGWTLLLQGLMISF  201
            + V+VDGW+L+L  L+ S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

662) RSPPHO_01389 in NC_017059


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 81/201 (41%), Positives = 139/201 (70%), Gaps = 15/201 (7%)

Query  49   FQLVALLTVLSVAPGLLIMVTSFTRIAVVLSILRQALGTQTTPPNMVLISLAMFMTFFIM  108
            +QL+ALL +LSV P L++M T+F +++VV+S+LR+ALG Q  PPN+ + +LA+ +T+FIM
Sbjct  8    YQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIM  67

Query  109  APTFQQAWDDGVAPLIREDITEE------QAFERTVEPFRAFMLHHVRPKDLELFAKFRG  162
            AP    + D   A L  E+++++      Q  + ++ P+R F+ ++    ++ +F  +  
Sbjct  68   APV---GLDVQ-ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  163  EK-----AETVEQVSTWSLVPAFMISELRRAFEIGFLIYLPFIVIDMVIASVlmsmgmmm  217
            +K      ++V   S   L+PAF +S+L  AF IG+L++LPF+ ID++++++L++MGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  218  lppmmlampFKLIFFVLVDGW  238
            ++PM L++PFKL+ FVLVDGW
Sbjct  184  VSPMTLSLPFKLLVFVLVDGW  204

663) fliP in NC_009831


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (375),  Expect = 7e-24, Method: Compositional matrix adjust.
 Identities = 97/212 (46%), Positives = 155/212 (74%), Gaps = 16/212 (7%)

Query  41   EILALMTVLSFLPALLMMLTSFTRIIVVLAILRQALGLQQSPPNKVLLGIALVLTLFVMR  100
            +++AL+ +LS LP L++M T+F ++ VV+++LR+ALG+QQ PPN  + G+ALVLT+F+M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  101  PVG---QVMYDEAYLPYDQGLIELPEAVN-IGVVPLRKFMLAQTRETDLEQMLKIAD---  153
            PVG   Q   ++  L+ D G   L++ ++  ++VP R F+    R+TD+EQ+  + D   
Sbjct  69   PVGLDVQARLQNEELSNDIG--ALAHQIDQNALVPYRDFL---QRNTDIEQVTFFNDIVQ  123

Query  154  ----EPVTLTADEIPFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmm  209
                E    +    ++++LMPAF LS+L+ AF+IG+LLFLPF+ IDL+V+++L++MGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  210  lspliislpFKLMVFVLVDGWSMTVSTLVASF  241
            +SP+ +SLPFKL+VFVLVDGWS+ ++ LV+S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

664) HBZC1_14080 in NC_015674


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (375),  Expect = 8e-24, Method: Compositional matrix adjust.
 Identities = 79/188 (43%), Positives = 138/188 (74%), Gaps = 6/188 (3%)

Query  69   TSFIRILVVFSFLRTALGTQQTPPTQILVSLALILTFFIMEPAAKKSYEVAIKPYLAEKI  128
            T+F+++ VVFS+LR ALG QQ PP   + +LAL+LT+FIM P +        +  L++ I
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  129  S-YSEAFER-GIVPFKEFMLKNTREKDLALFFRIRHLENP----KTPSAVPLSVLVPAFM  182
            +  ++ +++ ++VP+++F+ +NT   ++++F  I +   P     +  + +L +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  183  ISELKTAFQIGFLLYLPFLVIDMVvssilmamgmmmlppvmiSLPFKILVFILVDGFNLL  242
            +S+L+ AF+IG+LL+LPF+ ID++VS+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  243  VENLVASF  250
            + +LV+S+
Sbjct  208  LGQLVGSY  215

665) fliP in NC_010516


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (375),  Expect = 8e-24, Method: Compositional matrix adjust.
 Identities = 81/195 (42%), Positives = 139/195 (72%), Gaps = 6/195 (3%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQ  128
            P ++VM T+F++  VVF++LRNA+G QQ PPN  + GLAL LT+FIM PV  +++++  +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  129  PYMKNKINQ--EQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKPN----FKVTKDNAPLY  182
              + N I    +Q  + +  P R+F+ ++T   ++ +F D+ + +    ++ +    +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  183  IVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVM  242
            I++PAF +S+L+ AF+IG+LLF+PF+ IDL+V+++L++MGM M++P+ +SLPFKLL+FV+
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  243  VDGWYLLVKSLVMSF  257
            VDGW L++  LV S+
Sbjct  201  VDGWSLVLGQLVGSY  215

666) H04402_02743 in NC_017299


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (375),  Expect = 8e-24, Method: Compositional matrix adjust.
 Identities = 81/195 (42%), Positives = 139/195 (72%), Gaps = 6/195 (3%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQ  128
            P ++VM T+F++  VVF++LRNA+G QQ PPN  + GLAL LT+FIM PV  +++++  +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  129  PYMKNKITQ--EQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKPN----FKVTKDNAPLY  182
              + N I    +Q  + +  P R+F+ ++T   ++ +F D+ + +    ++ +    +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  183  IVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVM  242
            I++PAF +S+L+ AF+IG+LLF+PF+ IDL+V+++L++MGM M++P+ +SLPFKLL+FV+
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  243  VDGWYLLVKSLVMSF  257
            VDGW L++  LV S+
Sbjct  201  VDGWSLVLGQLVGSY  215

667) fliP in NC_012563


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (374),  Expect = 9e-24, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 139/195 (72%), Gaps = 6/195 (3%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQ  128
            P ++VM T+F++  VVF++LRNA+G QQ PPN  + GLAL LT+FIM PV  +++++  +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  129  PYMKNKITQ--EQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKPN----FKVTKDNAPLY  182
              + N I    +Q  + +  P R+F+ ++T   ++ +F ++ + +    ++ +    +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  183  IVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVM  242
            I++PAF +S+L+ AF+IG+LLF+PF+ IDL+V+++L++MGM M++P+ +SLPFKLL+FV+
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  243  VDGWYLLVKSLVMSF  257
            VDGW L++  LV S+
Sbjct  201  VDGWSLVLGQLVGSY  215

668) fliP in NC_009697


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (374),  Expect = 9e-24, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 139/195 (72%), Gaps = 6/195 (3%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQ  128
            P ++VM T+F++  VVF++LRNA+G QQ PPN  + GLAL LT+FIM PV  +++++  +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  129  PYMKNKITQ--EQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKPN----FKVTKDNAPLY  182
              + N I    +Q  + +  P R+F+ ++T   ++ +F ++ + +    ++ +    +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  183  IVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVM  242
            I++PAF +S+L+ AF+IG+LLF+PF+ IDL+V+++L++MGM M++P+ +SLPFKLL+FV+
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  243  VDGWYLLVKSLVMSF  257
            VDGW L++  LV S+
Sbjct  201  VDGWSLVLGQLVGSY  215

669) fliP in NC_009495


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (374),  Expect = 9e-24, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 139/195 (72%), Gaps = 6/195 (3%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQ  128
            P ++VM T+F++  VVF++LRNA+G QQ PPN  + GLAL LT+FIM PV  +++++  +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  129  PYMKNKITQ--EQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKPN----FKVTKDNAPLY  182
              + N I    +Q  + +  P R+F+ ++T   ++ +F ++ + +    ++ +    +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  183  IVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVM  242
            I++PAF +S+L+ AF+IG+LLF+PF+ IDL+V+++L++MGM M++P+ +SLPFKLL+FV+
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  243  VDGWYLLVKSLVMSF  257
            VDGW L++  LV S+
Sbjct  201  VDGWSLVLGQLVGSY  215

670) fliP in NC_009698


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (374),  Expect = 9e-24, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 139/195 (72%), Gaps = 6/195 (3%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQ  128
            P ++VM T+F++  VVF++LRNA+G QQ PPN  + GLAL LT+FIM PV  +++++  +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  129  PYMKNKITQ--EQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKPN----FKVTKDNAPLY  182
              + N I    +Q  + +  P R+F+ ++T   ++ +F ++ + +    ++ +    +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  183  IVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVM  242
            I++PAF +S+L+ AF+IG+LLF+PF+ IDL+V+++L++MGM M++P+ +SLPFKLL+FV+
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  243  VDGWYLLVKSLVMSF  257
            VDGW L++  LV S+
Sbjct  201  VDGWSLVLGQLVGSY  215

671) fliP in NC_012658


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  103 bits (374),  Expect = 9e-24, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 139/195 (72%), Gaps = 6/195 (3%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQ  128
            P ++VM T+F++  VVF++LRNA+G QQ PPN  + GLAL LT+FIM PV  +++++  +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  129  PYMKNKITQ--EQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKPN----FKVTKDNAPLY  182
              + N I    +Q  + +  P R+F+ ++T   ++ +F ++ + +    ++ +    +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  183  IVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVM  242
            I++PAF +S+L+ AF+IG+LLF+PF+ IDL+V+++L++MGM M++P+ +SLPFKLL+FV+
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  243  VDGWYLLVKSLVMSF  257
            VDGW L++  LV S+
Sbjct  201  VDGWSLVLGQLVGSY  215

672) fliP in NC_017297


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  102 bits (371),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 82/195 (43%), Positives = 139/195 (72%), Gaps = 6/195 (3%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMYPVYSEVNTKAIQ  128
            P ++VM T+F++  VVF++LRNA+G QQ PPN  + GLAL LT+FIM PV  +V+++  +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  129  PYMKNKITQ--EQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKPN----FKVTKDNAPLY  182
              + N I    +Q  + +  P R+F+ ++T   ++ +F D+ + +    ++ +    +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  183  IVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVM  242
            I++PAF +S+L+ AF+IG+LLF+PF+ IDL+V+++L++MGM M++P+ +SLPFKLL+FV+
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  243  VDGWYLLVKSLVMSF  257
            VDGW L++  LV S+
Sbjct  201  VDGWSLVLGQLVGSY  215

673) fliP in NC_009699


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  102 bits (371),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 82/195 (43%), Positives = 139/195 (72%), Gaps = 6/195 (3%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMYPVYSEVNTKAIQ  128
            P ++VM T+F++  VVF++LRNA+G QQ PPN  + GLAL LT+FIM PV  +V+++  +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  129  PYMKNKITQ--EQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKPN----FKVTKDNAPLY  182
              + N I    +Q  + +  P R+F+ ++T   ++ +F D+ + +    ++ +    +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  183  IVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVM  242
            I++PAF +S+L+ AF+IG+LLF+PF+ IDL+V+++L++MGM M++P+ +SLPFKLL+FV+
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  243  VDGWYLLVKSLVMSF  257
            VDGW L++  LV S+
Sbjct  201  VDGWSLVLGQLVGSY  215

674) fliP in NC_007643


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 90/214 (43%), Positives = 146/214 (69%), Gaps = 21/214 (9%)

Query  62   QLVGLLTVLSVAPGLLIMVTSFTRIVVVLSILRQALATQSTPPNMVMVSLALFMTFFIMA  121
            QL++LL +LSV P L++M T+F ++ VV+S+LR+AL+ Q  PPN+ + +LAL +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  122  PTFQQAWDQGLSPLIQEQISEE-EAFTRTVA-----PFRTFMLAHVRDKDLELFMSFNKE  175
            P    + D   + L +E++S++  A+++ +      P+R F+    R+ D+E    FN  
Sbjct  69   PV---GLDVQ-ARLQNEELSNDIGALAHQIDQNALVPYRDFL---QRNTDIEQVTFFNDI  121

Query  176  TAAQ-----PSDVSTQALI---PAFMISELRRAFEIGFLIFLPFVVIDMVIASVlmsmgm  227
               +        V  ++L+   PAF +S+L  AF IG+L+FLPFV ID++++++L++MGM
Sbjct  122  VQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGM  181

Query  228  mmlppmmlampFKLIFFVLVDGWYLVIGSLLSSY  261
            MM++PM L++PFKL+ FVLVDGW LV+G L++SY
Sbjct  182  MMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

675) fliP in NC_017584


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 90/214 (43%), Positives = 146/214 (69%), Gaps = 21/214 (9%)

Query  62   QLVGLLTVLSVAPGLLIMVTSFTRIVVVLSILRQALATQSTPPNMVMVSLALFMTFFIMA  121
            QL++LL +LSV P L++M T+F ++ VV+S+LR+AL+ Q  PPN+ + +LAL +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  122  PTFQQAWDQGLSPLIQEQISEE-EAFTRTVA-----PFRTFMLAHVRDKDLELFMSFNKE  175
            P    + D   + L +E++S++  A+++ +      P+R F+    R+ D+E    FN  
Sbjct  69   PV---GLDVQ-ARLQNEELSNDIGALAHQIDQNALVPYRDFL---QRNTDIEQVTFFNDI  121

Query  176  TAAQ-----PSDVSTQALI---PAFMISELRRAFEIGFLIFLPFVVIDMVIASVlmsmgm  227
               +        V  ++L+   PAF +S+L  AF IG+L+FLPFV ID++++++L++MGM
Sbjct  122  VQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGM  181

Query  228  mmlppmmlampFKLIFFVLVDGWYLVIGSLLSSY  261
            MM++PM L++PFKL+ FVLVDGW LV+G L++SY
Sbjct  182  MMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

676) Astex_1423 in NC_014816


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  102 bits (369),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 85/211 (41%), Positives = 142/211 (68%), Gaps = 14/211 (6%)

Query  60   QMLGLLTVLSLAPSIVIMTTSFIRIVVVLSLLRTALGLQQSPPNAVLISLAMFLSAVVMA  119
            Q+++LL +LS+ P +V+M T+F+++ VV+SLLR ALG+QQ PPN  + +LA+ L+  +MA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  120  PTYQAAYDAGIRPLMDQEM-----EMPQAFDAAS-EPVKTFMLSQVDAGDLNLFIRLSKV  173
            P    + D   R L ++E+      +++ +D  +  P + F+  + D  ++ +F  + + 
Sbjct  69   PV---GLDVQAR-LQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  174  EKPKDNMDL----PITVITPAFMISELKTAfligfllfipflviDLVVASVLMSMGMMML  229
              P    D     ++ ++ PAF +S+L+ AF IG+LLF+PF+ IDL+V+++L++MGMMM+
Sbjct  125  KWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  230  PPVVVSLPFKLIFFVLVDGWRLVCGSLVESF  260
            +P+ +SLPFKL+ FVLVDGW LV G LV S+
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

677) fliP in NC_007298


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  102 bits (371),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 87/215 (41%), Positives = 152/215 (71%), Gaps = 10/215 (4%)

Query  38   GTTYSLTIQTLLLMTALTFIPAIVLMMTGFTRIVIVLSLLRHALGTQTAPPNQVVVGLSL  97
             ++Y L   +LL+M  L+ +P +V+M T+F ++ +V+SLLR+ALG Q  PPN  + GL+L
Sbjct  5    NSSYQLI--ALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60

Query  98   FLTFFVMSPV-LEKVYTDAYVPLSENKINIMQAGERAA-IPMRSFMLKQTRESDLALFAG  155
             LT+F+M+PV L+         LS++   + +  ++ A +P R F+ ++T   ++++F +
Sbjct  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  156  IAKI---DKI-ETPEDTPLRILVPAFVISELKTAFQIGFILFIPFLVIDmvvasllmsmg  211
            I +    ++  ++    +L IL+PAF +S+L+ AF+IG++LF+PF+ ID++V+++L++MG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  212  mmmmspvmvalpFKLMLFVLVDGWHLVIGSLVQSF  246
            MMM+SP+ ++LPFKL++FVLVDGW LV+G LV S+
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

678) fliP in NC_007954


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 84/209 (41%), Positives = 144/209 (69%), Gaps = 10/209 (4%)

Query  45   QILILMTAMSFIPAMVIMLTSFTRIIVVLSILRQALGLQQTPSNQVLIGISLFMTFFIMS  104
            Q++ L+  +S +P +V+M T+F ++ VV+S+LR+ALG+QQ P+N  + G++L +T+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  105  PV-FDKIYTEAVEPYINETMTLQQSYEVGKL-PIKSFMLSQLRLTDLQTFVEI------S  156
            PV +D       E   N+  +L +  +   L P + F+  +  + ++  F +I       
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  157  GYKGITSPEEAPMSVIIPAFITSELKTAFQIGFMLFIPFLVLDLVVasilmamgmmmlsp  216
             Y++   P+  ++ +++PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  217  miVSLPFKIMLFVLVDGWSLVMGTLANSF  245
            M +SLPFK+++FVLVDGWSLV+G L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

679) fliP in NC_008229


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  102 bits (368),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 82/188 (44%), Positives = 135/188 (72%), Gaps = 6/188 (3%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDIGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L     +      +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRQLPNP-KTPDDV---SLSVLIPAFM  177
             + ++ ++++AL P+++F+ +NT   ++++F  I Q   P +  D V   SL +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  178  ISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFNLL  237
            +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  238  TENLVASF  245
              +LV+S+
Sbjct  208  LGQLVGSY  215

680) vfu_A02269 in NC_016602


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  101 bits (367),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 83/207 (41%), Positives = 148/207 (72%), Gaps = 6/207 (2%)

Query  45   QILIMMTMLSFVPAFIIMCTCFTRIIIVLSILRQALGLQQSPPNQVLVGLALVFTLLIMR  104
            Q++ ++ MLS +P +++M T F ++ +V+S+LR+ALG+QQ PPN  + GLALV+T++IM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  105  PVWTEIYADAYQPYMQEKI-TLSEAISTGA-KPLHHYMLAQTQVQTLEQVTKIA----GE  158
            PV  ++ A   +  + + I +L++ I   A  P ++++  +T+++ +     I      E
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  159  SLAENDDDIPFLILLPAYVLSELKIAFQIGFMVFLPFLVIDlvvasvlmsmgmmmlsPLI  218
               ++    ++LIL+PA+ LS+L+ AF+IG+++FLPF+ IDL+V+++L++MGMMM+SP+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  219  VSLPFKLLVFVVVDGWGMLVSSLSQSF  245
            +SLPFKLLVFV+VDGW+++++ L  S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

681) Rhom172_2117 in NC_015966


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  101 bits (367),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 82/190 (44%), Positives = 132/190 (70%), Gaps = 10/190 (5%)

Query  86   SFTRLVVIFSILRTALGLQQSPPTQVLIGLALFLTLFIMYPVF----DQIHDEALRPYLD  141
            +F +L V+FS+LR ALG+QQ PP   + GLAL LT+FIM PV      ++++E L   + 
Sbjct  29   AFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI-  87

Query  142  GEITQQVALERAAAPLRAFMLRQTREKDLMLFMDLA---RVEAF-DRPEDVPFYILVPAF  197
            G +++Q+  + A  P R F+ R+T   ++ +F D+    + E + D     ++ IL+PAF
Sbjct  88   GALAHQID-QNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAF  146

Query  198  VISELRIAFQIGFMIFLPFLLVDLIVAsmlmsmgmmmlppvmISLPLKLLLFVLADGWYL  257
             +S+L  AF+IG+++FLPF+ +DLIV+++L++MGMMM++P+ +SLP+KLL+FVL DGW L
Sbjct  147  TLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSL  206

Query  258  VVESVVRGYL  267
            V+  +V +YL
Sbjct  207  VLGQLVGSYL  216

682) fliP in NC_017956


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  101 bits (365),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 87/199 (44%), Positives = 137/199 (69%), Gaps = 13/199 (6%)

Query  65   PGLLVAVTSFTRIVVVLSLLRSALGVQQTPPNAVLIGLAMFLTGFVMTPTFERAWTEGVA  124
            P L+V  T+F ++ VV+SLLR+ALGVQQ PPN  + GLA+ LT F+M+P       +  A
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVG----LDVQA  76

Query  125  PLVAEDITEE-----EAFDRIS-APFRDFMTAHVGERELTAFVDMAALD-PEP--ASVED  175
             L  E+++++     + +D+ +  P+RDF+  + +  ++T F D+     PE    SV  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  176  VPLQVLVPAFMVSELRRAFEIGFLVFLPFLIIDmlvasllmsmgmmmlppvmISLPFKLI  235
             +L +L+PAF +S+L  AF IG+L+FLPF+ ID++V+++L++MGMMM++P+ +SLPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  236  FFVLIDGWSLIAGSLVRSF  254
             FVL+DGWSL+ G LV S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

683) fliP in NC_011000


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  101 bits (366),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 85/203 (42%), Positives = 143/203 (71%), Gaps = 6/203 (2%)

Query  56   LLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPV-L  114
            LL MLS LP +++M T+F ++ +V+SLLR+ALG    PPN  + GLA+ LT+F+M+PV L
Sbjct  13   LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGL  72

Query  115  DRAYNDGYKPFSDGSMPMEQAV-QRGVAPFKTFMLKQTRETDLALFAKISKAA-PMQGPD  172
            D         +S++  ++ + + Q ++ P++ F+ ++T   ++++F  I +   P +  D
Sbjct  73   DVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  173  DV---PLSLLVPAFVTSELKTGFQIGFTVFIPFLIIDmvvasvlmsmgmmmvspstvsLP  229
             V   +L +L+PAF  S+L+ +F+IG+ +F+PF+ ID++V+++L++MGMMMVSP T+SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  230  FKLMLFVLVDGWQLLIGSLAQSF  252
            FKL++FVLVDGW L++G L  S+
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSY  215

684) fliP in NC_018649


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  101 bits (367),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 82/197 (42%), Positives = 136/197 (70%), Gaps = 9/197 (4%)

Query  75   PAILVMMTSFTRIVVVLSFLRQAMGTAQVPPNQVLVGLSLFLTFFVMAPVWKTMDETAIT  134
            P ++VM T+F ++ VV+S+LR+A+G  QVPPN  + GL+L LT+F+MAPV   ++     
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  135  PYLDKKIAP--DVAVDRAMKPVRAFMFRQVRQKDIALFVRIAHLP-----RTPSSPDDIP  187
              L + I++  +   + A+ P R F+ R+    ++++F  I +       R +  PD + 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSL-  139

Query  188  TYVLIPAFVVSELSTAFEMGFLIYLPFLIldmvvssvlmsmgmmmlPPTVVSLPFKILLF  247
              +L+PAF +S+L+ AF +G+L++LPF+ +D++VS++L++MGMMM++P  +SLPFK+L+F
Sbjct  140  -LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVF  198

Query  248  VLVDGWSLVVGSLVRSF  264
            VLVDGWSLV+G LV S+
Sbjct  199  VLVDGWSLVLGQLVGSY  215

685) fliP in NC_008700


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  101 bits (366),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 84/209 (41%), Positives = 144/209 (69%), Gaps = 10/209 (4%)

Query  47   QILMLMTALSFLPAMVIMLTSFTRIIVTLSLLRQAIGLQQAPSNQVLIGLSLFMTFFIMA  106
            Q++ L+  LS LP +V+M T+F ++ V +SLLR+A+G+QQ P+N  + GL+L +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  PVFDKIYEQGVKPYMEETL-PIDQAFERGK-EPLKAFMLSQVRITDLETFVNIAG-----  159
            PV   +  +  +  + + + ++ + +++    P + F+  +  I ++  F +I       
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  160  -YDNIKSPEEAPMTVIIPAFITSELKTAFQIGFMLFVPFLVIDLVVasilmamgmmmlsp  218
             Y +   P+  ++ +++PAF  S+L+ AF+IG++LF+PF+ IDL+V++IL+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  219  miVSLPFKIMLFVLVDGWSLVMGTLANSF  247
            M +SLPFK+++FVLVDGWSLV+G L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

686) fliP in NC_008060


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  101 bits (365),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 84/203 (42%), Positives = 143/203 (71%), Gaps = 6/203 (2%)

Query  56   LLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPV-L  114
            LL MLS LP +++M T+F ++ +V+SLLR+ALG    PPN  + GLA+ LT+F+M+PV L
Sbjct  13   LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGL  72

Query  115  DRAYNDGYKPFSDGSMPMEQAV-QRGVAPFKTFMLKQTRETDLALFAKISKAA-PMQGPE  172
            D         +S++  ++ + + Q ++ P++ F+ ++T   ++++F  I +   P +  +
Sbjct  73   DVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  173  DV---PLSLLVPAFVTSELKTGFQIGFTVFIPFLIIDmvvasvlmsmgmmmvspstvsLP  229
             V   +L +L+PAF  S+L+ +F+IG+ +F+PF+ ID++V+++L++MGMMMVSP T+SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  230  FKLMLFVLVDGWQLLIGSLAQSF  252
            FKL++FVLVDGW L++G L  S+
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSY  215

687) fliP in NC_008542


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  101 bits (365),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 84/203 (42%), Positives = 143/203 (71%), Gaps = 6/203 (2%)

Query  56   LLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPV-L  114
            LL MLS LP +++M T+F ++ +V+SLLR+ALG    PPN  + GLA+ LT+F+M+PV L
Sbjct  13   LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGL  72

Query  115  DRAYNDGYKPFSDGSMPMEQAV-QRGVAPFKTFMLKQTRETDLALFAKISKAA-PMQGPE  172
            D         +S++  ++ + + Q ++ P++ F+ ++T   ++++F  I +   P +  +
Sbjct  73   DVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  173  DV---PLSLLVPAFVTSELKTGFQIGFTVFIPFLIIDmvvasvlmsmgmmmvspstvsLP  229
             V   +L +L+PAF  S+L+ +F+IG+ +F+PF+ ID++V+++L++MGMMMVSP T+SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  230  FKLMLFVLVDGWQLLIGSLAQSF  252
            FKL++FVLVDGW L++G L  S+
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSY  215

688) fliP in NC_010508


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  101 bits (365),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 84/203 (42%), Positives = 143/203 (71%), Gaps = 6/203 (2%)

Query  56   LLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPV-L  114
            LL MLS LP +++M T+F ++ +V+SLLR+ALG    PPN  + GLA+ LT+F+M+PV L
Sbjct  13   LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGL  72

Query  115  DRAYNDGYKPFSDGSMPMEQAV-QRGVAPFKTFMLKQTRETDLALFAKISKAA-PMQGPE  172
            D         +S++  ++ + + Q ++ P++ F+ ++T   ++++F  I +   P +  +
Sbjct  73   DVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  173  DV---PLSLLVPAFVTSELKTGFQIGFTVFIPFLIIDmvvasvlmsmgmmmvspstvsLP  229
             V   +L +L+PAF  S+L+ +F+IG+ +F+PF+ ID++V+++L++MGMMMVSP T+SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  230  FKLMLFVLVDGWQLLIGSLAQSF  252
            FKL++FVLVDGW L++G L  S+
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSY  215

689) HPOK113_0695 in NC_020508


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  100 bits (361),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/188 (43%), Positives = 134/188 (72%), Gaps = 6/188 (3%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI--RNLPNP--KTPNEVSLSVLIPAFM  177
             + ++ ++++AL P+++F+ +NT   ++++F  I   + P+    + +  SL +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  178  ISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFNLL  237
            +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  238  TENLVASF  245
              +LV+S+
Sbjct  208  LGQLVGSY  215

690) fliP in NC_017359


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  100 bits (361),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/188 (43%), Positives = 133/188 (71%), Gaps = 6/188 (3%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI--RNLPNP--KTPDEVSLSVLIPAFM  177
             + ++ ++++AL P+++F+ +NT   ++++F  I   + P+    +    SL +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  178  ISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFNLL  237
            +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  238  TENLVASF  245
              +LV+S+
Sbjct  208  LGQLVGSY  215

691) fliP in NC_017740


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  100 bits (361),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/188 (43%), Positives = 133/188 (71%), Gaps = 6/188 (3%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI--RNLPNP--KTPDEVSLSVLIPAFM  177
             + ++ ++++AL P+++F+ +NT   ++++F  I   + P+    +    SL +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  178  ISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFNLL  237
            +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  238  TENLVASF  245
              +LV+S+
Sbjct  208  LGQLVGSY  215

692) fliP in NC_017361


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 135/188 (72%), Gaps = 6/188 (3%)

Query  64   TSFIRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F++L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNP-KTPDDV---SLSVLIPAFM  177
             + ++ ++++AL P+++F+ +NT   ++++F  I +   P +  D V   SL +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  178  ISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFNLL  237
            +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  238  TENLVASF  245
              +LV+S+
Sbjct  208  LGQLVGSY  215

693) Rmar_0765 in NC_013501


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 82/190 (44%), Positives = 132/190 (70%), Gaps = 10/190 (5%)

Query  86   SFTRLVVIFSILRTALGLQQSPPTQVLIGLALFLTLFIMYPVF----DQIHDEALRPYLD  141
            +F +L V+FS+LR ALG+QQ PP   + GLAL LT+FIM PV      ++++E L   + 
Sbjct  29   AFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI-  87

Query  142  GEITQQVALERAAAPLRAFMLRQTREKDLMLFMDLANV---EAF-DRPEDVPFYILVPAF  197
            G +++Q+  + A  P R F+ R+T   ++ +F D+ +    E + D     ++ IL+PAF
Sbjct  88   GALAHQID-QNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAF  146

Query  198  VISELRIAFQIGFMIFLPFLLVDLIVAsvlmsmgmmmlppvmISLPLKLLLFVLADGWYL  257
             +S+L  AF+IG+++FLPF+ +DLIV+++L++MGMMM++P+ +SLP+KLL+FVL DGW L
Sbjct  147  TLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSL  206

Query  258  VVESVVRGYL  267
            V+  +V +YL
Sbjct  207  VLGQLVGSYL  216

694) fliP in NC_017366


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  100 bits (362),  Expect = 7e-23, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKT  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

695) fliP in NC_010524


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  100 bits (364),  Expect = 7e-23, Method: Compositional matrix adjust.
 Identities = 86/208 (42%), Positives = 147/208 (71%), Gaps = 12/208 (5%)

Query  61   TLLFFTALSFLPAVLLMMTGFTRIVIVLGLLRQALGTQAAPPNQVIVGLSLFLTFFVMAP  120
            +LLF   LS LP +++M T+F ++ +V++LLR+ALG Q  PPN  I GL+L LT+F+MAP
Sbjct  12   ALLF--MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAP  69

Query  121  TLDRVYADAYKPYAANQIG-FEEAIARGE-VPMRQFMLKQTRQSDLALFARL------AK  172
                V A   +   +N+IG + + I +   VP R+F+ ++T   ++++F  +       +
Sbjct  70   VGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPER  129

Query  173  LDPAVKSEQAPLRVLVPAFVTSELKSAFQIGFLIFIPFLVIDmvvasvlmslgmmmlspv  232
               +VK++  +L +L+PAF  S+L+ AF+IG+L+F+PF+ ID++V+++L+++GMMM+SP+
Sbjct  130  YRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  233  lvALPFKLMLFVLADGWNLLLGSLAASF  260
             ++LPFKL++FVL DGW+L+LG L +S+
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

696) Desaci_3816 in NC_018068


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  100 bits (363),  Expect = 7e-23, Method: Compositional matrix adjust.
 Identities = 79/197 (41%), Positives = 137/197 (70%), Gaps = 6/197 (3%)

Query  64   VAPAILLLMTSFTRIVIVLSFVRNALGTQQLPPNQVLVGLALFLSFFVMAPTWNQINTNA  123
            V P ++++ T+F ++ +V+S++RNALG QQ+PPN  + GLAL L++F+MAP   ++++  
Sbjct  19   VLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARL  78

Query  124  IQPYMKNQITQTEALTKAEE--PLRDFMFKQTREKDLELFVGLAKMERPKTYRDI----P  177
             +  + N+I         +   P RDF+ ++T   ++ +F ++ +  +P  YRD     +
Sbjct  79   QNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDS  138

Query  178  TYVLIPAFVISELKTAFQMGFAIFIPFMVIDMIVSSTlmsigmmmlppmmislpFKILLF  237
              +L+PAF +S+L+ AF++G+ +F+PF+ ID+IVS+ L+++GMMM++PM +SLPFK+L+F
Sbjct  139  LLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVF  198

Query  238  VLVDGWHLVVQSLVTSF  254
            VLVDGW LV+  LV S+
Sbjct  199  VLVDGWSLVLGQLVGSY  215

697) fliP in NC_017355


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  100 bits (362),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYVDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

698) Fbal_2331 in NC_014541


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  100 bits (361),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 96/211 (46%), Positives = 151/211 (72%), Gaps = 14/211 (6%)

Query  40   EILALMTALSFLPAMLLMMTSFTRIIVVLAVLRQALGLQQSPPNKLLIGIALVLTLFIMR  99
            +++AL+  LS LP +++M T+F ++ VV+++LR+ALG+QQ PPN  + G+ALVLT+FIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  100  PVWTEIH---EQAFLPYDNGELTLKQAVAVAEVPLRTFMLGQTRETDLEQMLKIAG----  152
            PV  +++   ++  L+ D G L+  Q    A VP R F+    R+TD+EQ+  + +    
Sbjct  69   PVGLDVQARLQNEELSNDIGALA-HQIDQNALVPYRDFL---QRNTDIEQVTFFNDIVQN  124

Query  153  ---ESTQLSAEEVPFSVLMPAFVLSELKTAFQIGFLLFIPFLVIDlvvasvlmsmgmmml  209
               E  + S    ++ +LMPAF LS+L+ AF+IG+LLF+PF+ IDL+V+++L++MGMMM+
Sbjct  125  KWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  210  spliislpFKLMVFVLVDGWSMTVGTLAASF  240
            SP+ +SLPFKL+VFVLVDGWS+ +G L +S+
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

699) fliP in NC_017374


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  100 bits (362),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 133/188 (71%), Gaps = 6/188 (3%)

Query  66   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  124
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  125  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKT-PDDV---SLSVLIPAFM  179
             + ++ ++++AL P+++F+ +NT   ++++F  I +   P    D V   SL +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  180  ISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFNLL  239
            +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  240  TENLVASF  247
              +LV+S+
Sbjct  208  LGQLVGSY  215

700) fliP in NC_017357


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  100 bits (362),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 133/188 (71%), Gaps = 6/188 (3%)

Query  66   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  124
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  125  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKT-PDDV---SLSVLIPAFM  179
             + ++ ++++AL P+++F+ +NT   ++++F  I +   P    D V   SL +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  180  ISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFNLL  239
            +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  240  TENLVASF  247
              +LV+S+
Sbjct  208  LGQLVGSY  215

701) fliP in NC_016596


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  100 bits (362),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 89/211 (43%), Positives = 149/211 (71%), Gaps = 11/211 (5%)

Query  54   QGIVLLTVLSVAPGLLVMATSFTRIIVVLSLLRSALGLQQSPPNMVLISLAMFLTFHIMG  113
            Q I LL +LSV P L+VM+T+F ++ VV+SLLR+ALG+QQ PPN+ + +LA+ LT+ IM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  114  PVFDAAWQDGLRPMLNEQVTQEQG-LERMVE-----PFRNFMVSQVRDKDLSAFAGFTGK  167
            PV +   Q  L+   NE+++++ G L + ++     P+R+F+  +    +++ F ++  +
Sbjct  69   PV-GLDVQARLQ---NEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  168  PEAEQPKTAATAD-LRVLVPAFLLSELRRAFEIGFLIFLPFLVIDmvvaavlmamgmmml  226
              +E+ + +  +D L +L+PAF LS+L  AF IG+L+FLPF+ ID++V+ +L+AMGMMM+
Sbjct  125  KWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  227  ppvmiaLPFKIIFFVLTDGWFLIANSLIRSY  257
            +P+ ++LPFK++ FVL DGW L+   L+ SY
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

702) fliP in NC_017382


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  100 bits (361),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 79/188 (43%), Positives = 134/188 (72%), Gaps = 6/188 (3%)

Query  68   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  126
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  127  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI--RNLPNP--KTPNEVSLSVLIPAFM  181
             + ++ ++++AL P+++F+ +NT   ++++F  I   + P+    + +  SL +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  182  ISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFNLL  241
            +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  242  TENLVASF  249
              +LV+S+
Sbjct  208  LGQLVGSY  215

703) fliP in NC_009484


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  100 bits (362),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 86/208 (42%), Positives = 135/208 (65%), Gaps = 8/208 (3%)

Query  48   QLIALIGVISLAPSLLVMLTAFTRIVIVLSLLRTALGTQTTPPNSVLIGLALFLTYFVMA  107
            QLIAL+ ++S+ P L+VM TAF ++ +V+SLLR ALG Q  PPN  + GLAL LT F+MA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  108  PV---FSQSWHTGLLPMTQGDVGTLEGLKLAAAPFHTFLADNARPADVRVFLSLAHIKPP  164
            PV        +   L+   G ++   + + A  P++ FL  N+   +V  F  + + K P
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQN-ALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  165  ANMQDVPWRA----LIPGFVVGELRRGFEMGFMIFLPFMVIDivissilmslgmmmlPPT  220
               +D         L+P+F +++L  +F +G+++FLPF+ ID+++S+IL+++GMMM++P 
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  221  AVSLPFKIIFFVLVDGWQLVCGSLVRSF  248
            ++SLPFK++ FVLVDGW LV G LV S+
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

704) fliP in NC_015186


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =  100 bits (362),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 86/208 (42%), Positives = 135/208 (65%), Gaps = 8/208 (3%)

Query  48   QLIALIGVISLAPSLLVMLTAFTRIVIVLSLLRTALGTQTTPPNSVLIGLALFLTYFVMA  107
            QLIAL+ ++S+ P L+VM TAF ++ +V+SLLR ALG Q  PPN  + GLAL LT F+MA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  108  PV---FSQSWHTGLLPMTQGDVGTLEGLKLAAAPFHTFLADNARPADVRVFLSLAHIKPP  164
            PV        +   L+   G ++   + + A  P++ FL  N+   +V  F  + + K P
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQN-ALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  165  ANMQDVPWRA----LIPGFVVGELRRGFEMGFMIFLPFMVIDivissilmslgmmmlPPT  220
               +D         L+P+F +++L  +F +G+++FLPF+ ID+++S+IL+++GMMM++P 
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  221  AVSLPFKIIFFVLVDGWQLVCGSLVRSF  248
            ++SLPFK++ FVLVDGW LV G LV S+
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

705) fliP in NC_017733


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 134/188 (72%), Gaps = 6/188 (3%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNP-KTPDDV---SLSVLIPAFM  177
             + ++ ++++AL P+++F+ +NT   ++++F  I +   P +  D V   SL +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  178  ISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFNLL  237
            +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  238  TENLVASF  245
              +LV+S+
Sbjct  208  LGQLVGSY  215

706) fliP in NC_022130


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 134/188 (72%), Gaps = 6/188 (3%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNP-KTPDDV---SLSVLIPAFM  177
             + ++ ++++AL P+++F+ +NT   ++++F  I +   P +  D V   SL +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  178  ISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFNLL  237
            +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  238  TENLVASF  245
              +LV+S+
Sbjct  208  LGQLVGSY  215

707) Sbal175_0426 in NC_017571


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 90/209 (44%), Positives = 150/209 (72%), Gaps = 9/209 (4%)

Query  42   EILALMTAISFLPIMLMMLTSFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMR  101
            +++AL+  +S LP++++M T+F ++ +V+++LR+ALG+QQ PPN  + G+AL+LTIFIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  102  PVGDKIYKEAYLPYDQGKIELME-AVSIAKVPLTRFMLAQTRATDLEQML---KIANEPT  157
            PVG  +  +A L  ++   ++   A  I + +L  +     R TD+EQ+     I ++  
Sbjct  69   PVGLDV--QARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  158  HMKTAEEV---PFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlsp  214
              +  + V   ++++LMPAF LS+L+ AF+IG+LLFLPF+ IDL+V+++L++MGMMM+SP
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  215  liislpFKLMVFVLVDGWSMTVSTLTASF  243
            + +SLPFKL+VFVLVDGWS+ ++ L +S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

708) Sbal117_4142 in NC_017579


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 90/209 (44%), Positives = 150/209 (72%), Gaps = 9/209 (4%)

Query  42   EILALMTAISFLPIMLMMLTSFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMR  101
            +++AL+  +S LP++++M T+F ++ +V+++LR+ALG+QQ PPN  + G+AL+LTIFIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  102  PVGDKIYKEAYLPYDQGKIELME-AVSIAKVPLTRFMLAQTRATDLEQML---KIANEPT  157
            PVG  +  +A L  ++   ++   A  I + +L  +     R TD+EQ+     I ++  
Sbjct  69   PVGLDV--QARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  158  HMKTAEEV---PFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlsp  214
              +  + V   ++++LMPAF LS+L+ AF+IG+LLFLPF+ IDL+V+++L++MGMMM+SP
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  215  liislpFKLMVFVLVDGWSMTVSTLTASF  243
            + +SLPFKL+VFVLVDGWS+ ++ L +S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

709) fliP in NC_009052


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 90/209 (44%), Positives = 150/209 (72%), Gaps = 9/209 (4%)

Query  42   EILALMTAISFLPIMLMMLTSFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMR  101
            +++AL+  +S LP++++M T+F ++ +V+++LR+ALG+QQ PPN  + G+AL+LTIFIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  102  PVGDKIYKEAYLPYDQGKIELME-AVSIAKVPLTRFMLAQTRATDLEQML---KIANEPT  157
            PVG  +  +A L  ++   ++   A  I + +L  +     R TD+EQ+     I ++  
Sbjct  69   PVGLDV--QARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  158  HMKTAEEV---PFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlsp  214
              +  + V   ++++LMPAF LS+L+ AF+IG+LLFLPF+ IDL+V+++L++MGMMM+SP
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  215  liislpFKLMVFVLVDGWSMTVSTLTASF  243
            + +SLPFKL+VFVLVDGWS+ ++ L +S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

710) fliP in NC_017360


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKVLVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

711) fliP in NC_019563


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EMSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

712) K750_05710 in NC_021217


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

713) fliP in NC_017375


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 78/191 (41%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSTL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ +++++L P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

714) fliP in NC_017376


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 78/191 (41%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSTL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ +++++L P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

715) TOL_2496 in NC_020888


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 87/215 (41%), Positives = 151/215 (71%), Gaps = 18/215 (8%)

Query  65   TIQILAIMTLLSVLPSLLIMMTSFTRIIVVMAILRQAMGLQQTPSNQVllglslfltlFI  124
            + Q++A++ +LSVLP L++M T+F ++ VV ++LR+A+G+QQ P+N  + GL+L LT+FI
Sbjct  7    SYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFI  66

Query  125  MMPVFRVINVEAVQPYIAEEITPQVAL------ERAIVPVHEFMLAQTRETDLQLFMRI-  177
            M PV     ++       EE++ +++       + A+VP ++F+  +T   ++ +F  I 
Sbjct  67   MAPV----GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIV  122

Query  178  ----SGR-QDIATPEETPIHILIPAFITSELKTAFQigflifipfliidlVVASILMAMG  232
                + R +D   P+  ++ IL+PAF  S+L+ AF+IG+L+F+PF+ IDL+V++IL+AMG
Sbjct  123  QNKWPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  233  MMMLSPIIISLPFKIMLFVLIDGWALIMGTLANSF  267
            MMM+SP+ +SLPFK+++FVL+DGW+L++G L  S+
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

716) fliP in NC_000921


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 99.4 bits (358),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 80/188 (43%), Positives = 134/188 (72%), Gaps = 6/188 (3%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSTL-PFKEFMLKNTREKDLALFFRIRNLPNP-KTPDDV---SLSVLIPAFM  177
             + ++ +++++L P+++F+ +NT   ++++F  I +   P +  D V   SL +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  178  ISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFNLL  237
            +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  238  TENLVASF  245
              +LV+S+
Sbjct  208  LGQLVGSY  215

717) fliP in NC_017737


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 99.4 bits (358),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 78/188 (42%), Positives = 134/188 (72%), Gaps = 6/188 (3%)

Query  64   TSFTRLIVVFGFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYENGIKPYMDKK  122
            T+F +L VVF++LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI--RNLPNP--KTPNDVSLSVLIPAFM  177
             + ++ ++++AL P+++F+ +NT   ++++F  I   + P+    + +  SL +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  178  ISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFNLL  237
            +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  238  TENLVASF  245
              +LV+S+
Sbjct  208  LGQLVGSY  215

718) fliP in NC_007626


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 99.4 bits (358),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 86/209 (42%), Positives = 146/209 (70%), Gaps = 10/209 (4%)

Query  49   QLIALTTVLSVAPSILVMVTSFTRFVVVLGFLRQALGTQQSPPNTVMVSLAMFLTAFVMA  108
            QLIAL  +LSV P ++VM T+F ++ VV+++LR+ALG QQ PPN  + +LA+ LT F+MA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  109  PT----FEKAWTDGIAPVMDGHLDEIEGFERAVKPFHAFMSKHVRGQDLKLFMDLSRAKE  164
            P       +   + ++  +++  ++I+  + A+ P++ F+ ++   +++ +F D+ + K 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQID--QNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  165  VEKAEDA----PLRALIPAFMISELRRAFEIGfliflpfliiDMVIASVLmsmgmmmipp  220
             E+  D+    +L  L+PAF +S+L  AF IG+L+FLPF+ ID++++++L++MGMMM++P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  221  amisLPFKLIFFVMVDGWYLVVGSLVQSY  249
              +SLPFKL+ FV+VDGW LV+G LV SY
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

719) fliP in NC_017735


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 99.1 bits (357),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 78/188 (42%), Positives = 134/188 (72%), Gaps = 6/188 (3%)

Query  64   TSFTRLIVVFGFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYENGIKPYMDKK  122
            T+F +L VVF++LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI--RNLPNP--KTPNDVSLSVLIPAFM  177
             + ++ ++++AL P+++F+ +NT   ++++F  I   + P+    + +  SL +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  178  ISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFNLL  237
            +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  238  TENLVASF  245
              +LV+S+
Sbjct  208  LGQLVGSY  215

720) fliP in NC_011145


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 99.1 bits (357),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 78/193 (41%), Positives = 133/193 (69%), Gaps = 6/193 (3%)

Query  49   LLVSVTSFTRIVIVLSFLRQALGTPQVPPNQVLIGLALVLSFFVMSPTATRVYADALGPY  108
            L+V  T+F ++ +V+S+LR+ALG  QVPPN  + GLALVL++F+M+P +  V A      
Sbjct  23   LVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEE  82

Query  109  LDDRIGQ-AEALERAS-GPVREFMLRQTRDQDLALFYEISATPRPA----SGDAIPMSIA  162
            L + IG  A+ +++ +  P R+F+ R+T  +++++F +I    +P     S  + ++ I 
Sbjct  83   LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLIL  142

Query  163  VPAFMISELTTAFRMGlflyvplllvdllvsailMSMGMMMVPPTLIALPVKIGLFVMAD  222
            +PAF +S+L  AF++GL+L++P++ +DL+VS IL++MGMMMV+P  ++LP K+ +FV+ D
Sbjct  143  MPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVD  202

Query  223  GWRLVVGALARSF  235
            GW LV+G L  S+
Sbjct  203  GWSLVLGQLVGSY  215

721) fliP in NC_010698


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/188 (43%), Positives = 133/188 (71%), Gaps = 6/188 (3%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI--RNLPNP--KTPDEVSLSVLIPAFM  177
             + ++ ++++AL P+++F+ +NT   ++++F  I   + P+    +    SL +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  178  ISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFNLL  237
            +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  238  TENLVASF  245
              +LV+S+
Sbjct  208  LGQLVGSY  215

722) fliP in NC_019560


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

723) fliP in NC_012973


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

724) fliP in NC_014256


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  76   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  134
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  135  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  186
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  187  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  246
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  247  NLLTENLVASF  257
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

725) fliP in NC_017358


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

726) fliP in NC_017368


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

727) fliP in NC_017365


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

728) fliP in NC_017367


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

729) fliP in NC_011333


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  76   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  134
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  135  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  186
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  187  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  246
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  247  NLLTENLVASF  257
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

730) fliP in NC_008086


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

731) fliP in NC_017372


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

732) fliP in NC_017362


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

733) HPOK310_0676 in NC_020509


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

734) fliP in NC_011498


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  76   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  134
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  135  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  186
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  187  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  246
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  247  NLLTENLVASF  257
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

735) fliP in NC_017742


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

736) fliP in NC_014555


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

737) fliP in NC_017378


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

738) fliP in NC_017379


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

739) fliP in NC_017741


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

740) fliP in NC_017739


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

741) fliP in NC_017354


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

742) K747_07525 in NC_021215


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

743) K751_03955 in NC_021218


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

744) K748_00620 in NC_021882


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

745) K749_02145 in NC_021216


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  174
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  175  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  234
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  235  NLLTENLVASF  245
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

746) fliP in NC_017926


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  76   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  134
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  135  ISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPD-------EVSLSVLIP  186
             + ++ ++++AL P+++F+ +NT   ++++F    ++ + K P+         SL +L+P
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFF---NDIVQNKWPERYRDSVKPDSLLILMP  144

Query  187  AFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGF  246
            AF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG 
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  247  NLLTENLVASF  257
            +L+  +LV+S+
Sbjct  205  SLVLGQLVGSY  215

747) fliP in NC_014125


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 86/212 (41%), Positives = 151/212 (72%), Gaps = 11/212 (5%)

Query  43   SINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTY  102
            S +L  L+FM  L+VLP L++  T+F ++ +V+S+LR+A+G+ Q P N  + G+AL +T 
Sbjct  7    SYQLIALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  103  FVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPL---RQFMLNQTRKNDLSLFEKFAH  159
            F+M+PV   ++    +  +++ I+ +LA    Q++L   R+F+  +T  +++++F+ + +
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIG-ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  160  NV-----PKSLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlVVSSVLMAMGMMM  214
            N        S+   ++ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  215  LSPLIISLPFKIMLFVMVDGWTLVLGSLASSF  246
            +SP+ +SLPFK+++FV+VDGW+LVLG L +S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

748) lp12_1727 in NC_016811


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 86/212 (41%), Positives = 151/212 (72%), Gaps = 11/212 (5%)

Query  43   SINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTY  102
            S +L  L+FM  L+VLP L++  T+F ++ +V+S+LR+A+G+ Q P N  + G+AL +T 
Sbjct  7    SYQLIALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  103  FVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPL---RQFMLNQTRKNDLSLFEKFAH  159
            F+M+PV   ++    +  +++ I+ +LA    Q++L   R+F+  +T  +++++F+ + +
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIG-ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  160  NV-----PKSLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlVVSSVLMAMGMMM  214
            N        S+   ++ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  215  LSPLIISLPFKIMLFVMVDGWTLVLGSLASSF  246
            +SP+ +SLPFK+++FV+VDGW+LVLG L +S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

749) fliP in NC_009494


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 86/212 (41%), Positives = 151/212 (72%), Gaps = 11/212 (5%)

Query  43   SINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTY  102
            S +L  L+FM  L+VLP L++  T+F ++ +V+S+LR+A+G+ Q P N  + G+AL +T 
Sbjct  7    SYQLIALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  103  FVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPL---RQFMLNQTRKNDLSLFEKFAH  159
            F+M+PV   ++    +  +++ I+ +LA    Q++L   R+F+  +T  +++++F+ + +
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIG-ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  160  NV-----PKSLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlVVSSVLMAMGMMM  214
            N        S+   ++ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  215  LSPLIISLPFKIMLFVMVDGWTLVLGSLASSF  246
            +SP+ +SLPFK+++FV+VDGW+LVLG L +S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

750) LPE509_01400 in NC_020521


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 86/212 (41%), Positives = 151/212 (72%), Gaps = 11/212 (5%)

Query  43   SINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTY  102
            S +L  L+FM  L+VLP L++  T+F ++ +V+S+LR+A+G+ Q P N  + G+AL +T 
Sbjct  7    SYQLIALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  103  FVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPL---RQFMLNQTRKNDLSLFEKFAH  159
            F+M+PV   ++    +  +++ I+ +LA    Q++L   R+F+  +T  +++++F+ + +
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIG-ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  160  NV-----PKSLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlVVSSVLMAMGMMM  214
            N        S+   ++ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  215  LSPLIISLPFKIMLFVMVDGWTLVLGSLASSF  246
            +SP+ +SLPFK+++FV+VDGW+LVLG L +S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

751) fliP in NC_002942


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 86/212 (41%), Positives = 151/212 (72%), Gaps = 11/212 (5%)

Query  43   SINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTY  102
            S +L  L+FM  L+VLP L++  T+F ++ +V+S+LR+A+G+ Q P N  + G+AL +T 
Sbjct  7    SYQLIALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  103  FVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPL---RQFMLNQTRKNDLSLFEKFAH  159
            F+M+PV   ++    +  +++ I+ +LA    Q++L   R+F+  +T  +++++F+ + +
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIG-ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  160  NV-----PKSLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlVVSSVLMAMGMMM  214
            N        S+   ++ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  215  LSPLIISLPFKIMLFVMVDGWTLVLGSLASSF  246
            +SP+ +SLPFK+++FV+VDGW+LVLG L +S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

752) fliP in NC_021350


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 86/212 (41%), Positives = 151/212 (72%), Gaps = 11/212 (5%)

Query  43   SINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTY  102
            S +L  L+FM  L+VLP L++  T+F ++ +V+S+LR+A+G+ Q P N  + G+AL +T 
Sbjct  7    SYQLIALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  103  FVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPL---RQFMLNQTRKNDLSLFEKFAH  159
            F+M+PV   ++    +  +++ I+ +LA    Q++L   R+F+  +T  +++++F+ + +
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIG-ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  160  NV-----PKSLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlVVSSVLMAMGMMM  214
            N        S+   ++ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  215  LSPLIISLPFKIMLFVMVDGWTLVLGSLASSF  246
            +SP+ +SLPFK+++FV+VDGW+LVLG L +S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

753) fliP in NC_017371


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 98.6 bits (355),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 133/188 (71%), Gaps = 6/188 (3%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEP-SLKKAYDTGIKPYMDKK  122
            T+F +L VVFS+LR ALG QQ PP   + +L+L+LT+FIM P +L            +  
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  123  ISYTEAFEKSAL-PFKKFMLKNTREKDLALFFRIRNLPNP-KTPDDV---SLSVLIPAFM  177
             + ++ ++++AL P++ F+ +NT   ++++F  I +   P +  D V   SL +L+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  178  ISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFNLL  237
            +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVF+LVDG +L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  238  TENLVASF  245
              +LV+S+
Sbjct  208  LGQLVGSY  215

754) fliP in NC_012969


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 98.6 bits (355),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 131/190 (69%), Gaps = 6/190 (3%)

Query  74   MMTGFTRIIIVLSLLRQALGTPTSPPNQVLVGLALFLTFFVMSPV-MDKIYVEAYQPLSE  132
            M T+F ++ +V+SLLR+ALG    PPN  + GLAL LT+F+M+PV +D       + LS+
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85

Query  133  NKITLQEALEKGA-APLKTFMLKQTREADIALFMRISRSDAV----DGPEQTPLRVLVPA  187
            +  +L + +++ A  P + F+ ++T   ++++F  I ++       D+    +L +L+PA
Sbjct  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145

Query  188  FMTSELKTAFQIGFAIFIPFLIIDmvvasvlmsmgmmmvsPAIVALPFKLMLFVLVDGWQ  247
            F  S+L+ AF+IG+ +F+PF+ ID++V+++L++MGMMMVSP  ++LPFKL++FVLVDGW 
Sbjct  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205

Query  248  LVLGSLAESF  257
            LVLG L  S+
Sbjct  206  LVLGQLVGSY  215

755) Desor_4879 in NC_016584


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 98.6 bits (355),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 79/195 (41%), Positives = 138/195 (71%), Gaps = 6/195 (3%)

Query  67   PAILMMMTSFTRIVIVLSFVRNALGTQQLPPNQVLVGLALFLSFFVMAPTWNEINTNAVQ  126
            P +++M T+F ++ +V+S++RNALG QQ+PPN  + GLAL L++F+MAP   ++++   +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  127  PYIKHQITQ-SEALDRAE-EPLRMFMFKQTREKDLQLFVGLSKMEQPKTYRDV----PTY  180
              + ++I   ++ +D+    P R F+ ++T   ++ +F ++ +   P  YRD     +  
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  181  VLIPAFVISELKTAFQMGFAIFVPFIVIDMIVSSTlmsigmmmlppmmislpFKLLLFVL  240
            +L+PAF +S+L+ AF++G+ +F+PF+ ID+IVS+ L+++GMMM++PM +SLPFKLL+FVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  241  VDGWHLVVESLVTSF  255
            VDGW LV+  LV S+
Sbjct  201  VDGWSLVLGQLVGSY  215

756) fliP in NC_014733


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 98.3 bits (354),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 131/190 (69%), Gaps = 6/190 (3%)

Query  86   MMTGFTRIIIVLSLLRQALGTPTSPPNQVLVGLALFLTFFVMSPV-MDKIYVEAYQPLSE  144
            M T+F ++ +V+SLLR+ALG    PPN  + GLAL LT+F+M+PV +D       + LS+
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85

Query  145  NKITLQEALEKGA-APLKTFMLKQTREADIALFMRISRSDAV----DGPEQTPLRVLVPA  199
            +  +L + +++ A  P + F+ ++T   ++++F  I ++       D+    +L +L+PA
Sbjct  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145

Query  200  FMTSELKTAFQIGFAIFIPFLIIDmvvasvlmsmgmmmvsPAIVALPFKLMLFVLVDGWQ  259
            F  S+L+ AF+IG+ +F+PF+ ID++V+++L++MGMMMVSP  ++LPFKL++FVLVDGW 
Sbjct  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205

Query  260  LVLGSLAESF  269
            LVLG L  S+
Sbjct  206  LVLGQLVGSY  215

757) fliP in NC_009438


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 98.1 bits (353),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 87/209 (42%), Positives = 151/209 (73%), Gaps = 9/209 (4%)

Query  42   EILALMTAISFLPVMLMMLTSFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMR  101
            +++AL+  +S LP++++M T+F ++ +V+++LR+ALG+QQ PPN  + G+AL+LTIFIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  102  PVGDKIYKEAYLPYDQGKIELME-AISIAKVPLTRFMLAQTRETDLEQML---KIANEPT  157
            PVG  +  +A L  ++   ++   A  I + +L  +     R+TD+EQ+     I ++  
Sbjct  69   PVGLDV--QARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  158  HMKTAEEV---PFFVLMPAFVLSELKTAFQIGFLIFLPFLVIDlvvasvlmsmgmmmlsp  214
              +  + V   ++++LMPAF LS+L+ AF+IG+L+FLPF+ IDL+V+++L++MGMMM+SP
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  215  liislpFKLMIFVLVDGWAMTVSTLTASF  243
            + +SLPFKL++FVLVDGW++ ++ L +S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

758) fliP in NC_008750


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 98.1 bits (353),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 87/209 (42%), Positives = 151/209 (73%), Gaps = 9/209 (4%)

Query  42   EILALMTAISFLPVMLMMLTSFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMR  101
            +++AL+  +S LP++++M T+F ++ +V+++LR+ALG+QQ PPN  + G+AL+LTIFIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  102  PVGDKIYKEAYLPYDQGKIELME-AISIAKVPLTRFMLAQTRETDLEQML---KIANEPT  157
            PVG  +  +A L  ++   ++   A  I + +L  +     R+TD+EQ+     I ++  
Sbjct  69   PVGLDV--QARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  158  HMKTAEEV---PFFVLMPAFVLSELKTAFQIGFLIFLPFLVIDlvvasvlmsmgmmmlsp  214
              +  + V   ++++LMPAF LS+L+ AF+IG+L+FLPF+ IDL+V+++L++MGMMM+SP
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  215  liislpFKLMIFVLVDGWAMTVSTLTASF  243
            + +SLPFKL++FVLVDGW++ ++ L +S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

759) fliP in NC_007954


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 97.8 bits (352),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 91/209 (44%), Positives = 150/209 (72%), Gaps = 10/209 (4%)

Query  42   EILALMTALSFLPAMLMMLTSFTRIVVVLAILRQALGLQQSPPNKVLIGIALVLTLFIMR  101
            +++AL+  LS LP +++M T+F ++ VV+++LR+ALG+QQ PPN  + G+ALVLT+FIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  102  PVGDSIYKEAYLPYDQGKIELMA-AIDIAKVPLSQFMLAQTRETDLEQMLKIAN------  154
            PVG  +  +A L  ++   ++ A A +I + +L  +     R+TD+EQ+  + +      
Sbjct  69   PVGLDV--QARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  155  -EPIDLTPAEIPFLVLMPAFVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlsp  213
             E    +    ++L+LMPAF LS+L+ AF+IG+LLFLPF+ IDL+V+++L++MGMMM+SP
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  214  liislpFKLMIFVLVDGWAMTVSTLTASF  242
            + +SLPFKL++FVLVDGW++ ++ L +S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

760) fliP in NC_013194


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 97.5 bits (351),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 82/199 (42%), Positives = 143/199 (72%), Gaps = 6/199 (3%)

Query  56   LTFIPAALLMMTSFTRIIIVLSLLRHALGTQTSPPNQVLLGLSLFLTFFIMSPV-LDTVY  114
            L+ +P  ++M T+F ++ +V+SLLR+ALG Q  PPN  + GL+L LT+FIM+PV LD   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  115  TEAYLPLSENRITYLQAIERGA-VPLRKFMLKQTREADIALFARMTN---APRF-QSTDD  169
                  LS++  +  + I++ A VP R F+ ++T   ++++F  + +   + R+ +S   
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  170  IPMRLLIPAFVTSELKTAFQIGFIIFIPFLIVDmvvasvlmsmgmmmmspvmvalpFKLM  229
             ++ +L+PAF  S+L+ AF+IG+++F+PF+ +D++V+++L++MGMMM+SP+ ++LPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  230  LFVLVDGWHLLLGSLVASF  248
            +FVLVDGW L+LG LV+S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

761) fliP in NC_008599


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 97.3 bits (350),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 83/194 (43%), Positives = 143/194 (74%), Gaps = 18/194 (9%)

Query  62   TSFLRLIIVFSFLRQAMGTQQMPPTNVLISLALILTFFIMEPVA--------KQSYNEGI  113
            T+FL+L +VFS+LR+A+G QQ+PP   + +LAL+LT+FIM PV+        ++  +++I
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  114  KPYLEEKIGYQDAFALGAKPFKEFMVRNTREKDLALFYRI----RALPNPNTVDDipfti  169
             + L ++I+ Q+A+     P+++F+ RNT   ++++F  I    ++    ++V   ++ I
Sbjct  88   GA-LAHQID-QNALV----PYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLI  141

Query  170  aapafiiSELKTAFEIGFLLYLPFLVIDmvvssvlmsmgmmmlppvmisLPFKLLIFVLV  229
              PAF +S+L+ AF IG+LL+LPF+ ID++VS++L++MGMMM++P+ +SLPFKLL+FVLV
Sbjct  142  LMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLV  201

Query  230  DGWNLLIGNLVASF  243
            DGW+L++G+LV+S+
Sbjct  202  DGWSLVLGQLVGSY  215

762) fliP in NC_011126


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 97.0 bits (349),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 85/212 (41%), Positives = 145/212 (69%), Gaps = 5/212 (2%)

Query  44   TEAIRLILILTVLSLAPSIIIMTTSFIRIVTVLSVLRQAIGLPNVPPNQVITSLALFLTF  103
              + +LI +L +LS+ P +++M T+F+++  V+S+LR+A+G+ +VPPN  I +LAL LT+
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  104  YVMYPVINQINQNALQPYLQHKITD--KQFIQNTIEPIKDFMVRNTKVSTERTFLLASni  161
            ++M PV  +++    +  L + I     Q+ QN++ P +DF+ RNT +  + TF+     
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIE-QVTFFNDIVQ  123

Query  162  pnkdniknindLP--LSVVIPAFMVSELSIAfqiifllylpfliiDMVVSAILLAMGIIM  219
             +  +    +  P  L +++PAF +S+L+ AF+I +LL+LPF+ ID++VS ILLAMG++M
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  220  IPPTVISLPFKIMLFVLVNGWELVILSLVRSY  251
            ++P  +SLPFK+++FVLV+GW LV+  LV SY
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

763) fliP in NC_005090


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 96.8 bits (348),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 76/189 (41%), Positives = 136/189 (72%), Gaps = 8/189 (4%)

Query  65   TSFTRLIIVFSFLRTAMGTQQSPPTQLLVSLAMVLTFFIMEPIAKQSYEIGIKPYLAKEI  124
            T+F +L +VFS+LR A+G QQ PP   + +LA+VLT+FIM P++ +      +  L+++I
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  125  ---PYDVAFVKSVGPFKEFMIRNTREKDLALFYRIRGMENPQ----TIEDIPLTMVIPAF  177
               + ++   +++ P+++F+ RNT   ++++F  I     P+    ++   +L +++PAF
Sbjct  88   GALAHQID-QNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAF  146

Query  178  MISEMKTAFQIGFLIYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFVLVDGFNL  237
             +S+++ AF+IG+L++LPF+ ID+++S+IL+AMGMMM++P+ +SLPFK+LVFVLVDG +L
Sbjct  147  TLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSL  206

Query  238  LVGSLVESF  246
            ++G LV S+
Sbjct  207  VLGQLVGSY  215

764) Desmer_3905 in NC_018515


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 96.5 bits (347),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 87/214 (41%), Positives = 151/214 (71%), Gaps = 6/214 (2%)

Query  46   EQTGTSLQILMLLTVLSLAPAILMMMTSFTRIIIVLSFVRNALGTQQLPPNQVLVGlslf  105
            E   +S Q++ LL +LS+ P +++M T+F ++ +V+S++RNALG QQ+PPN  + GL+L 
Sbjct  2    ELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALV  61

Query  106  lsffIMAPTWNQINTNAVQPYMQNQITQ-SEAIDRAE-EPLRMFMFKQTREKDLELFVGL  163
            L++FIMAP   ++++   +  + N+I   ++ ID+    P R F+ ++T   ++ +F ++
Sbjct  62   LTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDI  121

Query  164  SKMERPKTYREV----PTYVLIPAFVISELKTAFQMGFAIFIPFIVIDMIVSSTlmsigm  219
             +  +P  YR+     +  +L+PAF +S+L+ AF++G+ +F+PF+ ID+IVS+ L+++GM
Sbjct  122  VQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGM  181

Query  220  mmlppmmislpFKLLLFVLVDGWHLVVESLVNSF  253
            MM++PM +SLPFKLL+FVLVDGW LV+  LV S+
Sbjct  182  MMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

765) fliP in NC_017955


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 96.2 bits (346),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 89/215 (42%), Positives = 145/215 (68%), Gaps = 11/215 (5%)

Query  79   NSPSQAVTLILAITVLSIAPSALLLVTSFTKMLVVLSLTRNALGLASSPPNQVLTGIALF  138
            NS+ Q ++L++ ++VL   P  +++ T+F K+ VV+SL RNALG+   PPN  + G+AL 
Sbjct  5    NSSYQLIALLFMLSVL---PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALV  61

Query  139  LTIFVMGPVFSDINEVAVQPYLDGTISASQAYDVGEAPL---KSFLLDNTRDDELKLMIG  195
            LTIF+M+PV  D++    +  L   I+A  A ++++ +L   + FL  NT  +++ +  +
Sbjct  62   LTIFIMAPVGLDVQARLQNEELSNDIGA-LAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  196  LSGEEKPA----DEASVSMLTLIPAFVLSELKSAFIIGLVIFIPFLVLDmlvsaalmsmg  251
            +  +  P        + S+L L+PAF LS+L+ AF IGL++F+PF+ +D++VS  L++MG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  252  mmmvppsvvaLPFKLLLFVMVDGWALITTALVGSY  286
            MMMV+P  ++LPFKLL+FV+VDGW+L+   LVGSY
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

766) fliP in NC_009348


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 95.7 bits (344),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 80/189 (43%), Positives = 137/189 (73%), Gaps = 16/189 (8%)

Query  63   RIIIVLAILRQAMGLQQSPPNRVligisliltiviiRPVWTDMYQHAFIPYDQ--NEI-S  119
            ++ +V+++LR+A+G+QQ PPN  + G++L+LTI I+ PV  D+  +A +  ++  N+I +
Sbjct  32   KLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDV--QARLQNEELSNDIGA  89

Query  120  LSEGIARAE-KPLRHFMLAQTREPDLEQMLRISGEPTSL----TKDEV---PFGVLLPAF  171
            L++ I +    P R+F+    R+ D+EQ+  +++   +      +D V   ++ +L+PAF
Sbjct  90   LAHQIDQNALVPYRDFL---QRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAF  146

Query  172  VLSELNTAFQIGFMLFIPFLVIDLVVASVLMAMGMMMLSPLIISLPFKLMVFVLVDGWSM  231
             LS+LN AF+IG++LF+PF+ IDL+V+++L+AMGMMM+SP+ +SLPFKL+VFVLVDGWS+
Sbjct  147  TLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSL  206

Query  232  TVGTLAASF  240
             +G L +S+
Sbjct  207  VLGQLVGSY  215

767) BC1002_3015 in NC_014117


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 95.2 bits (342),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 86/204 (43%), Positives = 143/204 (71%), Gaps = 6/204 (2%)

Query  72   LLTMLSFLPAMVLMMTSFTRIVIVLSLLRQALGTTTTPPNQVLVGLALFLTFFVMSPV-L  130
            LL MLS LP +V+M T+F ++ +V+SLLR+ALG    PPN  + GLAL LT+F+M+PV L
Sbjct  13   LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGL  72

Query  131  DKAYNEGYKPFSEGTLPMDQAVSR-GVAPFKTFMLRQTRESDLALFARISHAA-PMQGPE  188
            D         +S++  ++ + + + ++ P++ F+ R+T   ++++F  I +   P +  +
Sbjct  73   DVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRD  132

Query  189  DV---PLSLLVPSFVTSELKtgftigftifiPFLIIDmvvasvlmsmgmmmvsPATISLP  245
             V   +L +L+P+F  S+L+ +F IG+ +F+PF+ ID++V+++L++MGMMMVSP T+SLP
Sbjct  133  SVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLP  192

Query  246  FKLMLFVLVDGWQLLLGSLAQSFV  269
            FKL++FVLVDGW L+LG L  S++
Sbjct  193  FKLLVFVLVDGWSLVLGQLVGSYL  216

768) fliP in NC_022357


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 94.9 bits (341),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 144/199 (73%), Gaps = 6/199 (3%)

Query  52   LTFLPAVLLMMTAFTRIIIVLSLLRMAIGTMQAPPNQILIGLSLFLTFFVMAPV-FDKIY  110
            L+ LP +++M TAF ++ +V+SLLR A+G  Q PPN  + GL+L LT+F+MAPV +D   
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  111  AEAYQPYAEQKIDFNQALEKGA-APLKAFMLRQTRQDDLALFVKLSNSA-PLPGPEAV--  166
                +  +++   + + +++ A  P + F+ R+T  +++++F  + ++  P    ++V  
Sbjct  77   RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  167  -PMKILVPAYVISELKTAFQIGFVVFLPFLIIDmvvasvlmsmgmmmlspmvisLPFKLM  225
             ++ IL+PA+ +S+L+ AF+IG+++FLPF+ ID++V+++L++MGMMM+SPM +SLPFKL+
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  226  LFVLVDGWNLLIGSLVQSF  244
            +FVLVDGW+L++G LV S+
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

769) fliP in NC_008048


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 94.7 bits (340),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 76/186 (41%), Positives = 133/186 (72%), Gaps = 6/186 (3%)

Query  75   FTRIIIVLSILRHALGLQQTPPNQvlvglslflslfvMQPVISEVN-RVAIEPYGQEQID  133
            F ++ +V+S+LR+ALG+QQ PPN  + GL+L L++F+M PV  +V+ R+  E  +++   
Sbjct  30   FLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIGA  89

Query  134  IGEAVSRSG-DALHGFMMKQTRKTDLMMFAKIAR---APAY-ASPKDVPFSILLPAFVTS  188
            +++ + +++  + ++F+ ++T   ++  F  I +   +  Y  S K  ++ IL+PAF  S
Sbjct  90   LAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTLS  149

Query  189  ELKTAFQIGFLIFLPFLVIDLIVasalmslgmmmlsPTIISMPFKLLLFVLVDGWALTMG  248
            +L+ AF+IG+L+FLPF+ IDLIV++ L+++GMMM+SP  +S+PFKLL+FVLVDGW+L +G
Sbjct  150  QLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLG  209

Query  249  SLAASF  254
             L +S+
Sbjct  210  QLVGSY  215

770) Thimo_0280 in NC_019940


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 94.7 bits (340),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 132/189 (70%), Gaps = 10/189 (5%)

Query  67   SFTRIIIVLAILRQALGTMQTPPNQVLIGLALFLTLFVMSPVLQRVNEDAVQPYLKEELP  126
            +F ++ +V+++LR+ALG  Q PPN  + GLAL LT+F+M+PV   V+    +  L +++ 
Sbjct  29   AFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIG  88

Query  127  A-ERAIEQAS-VSLRKFMLPQIREQDLALFADLADIG------DLQSPDAVPFSLLVPAF  178
            A  + I+Q + V+ R F+  +   +++++F D+ +        D   PD++   +L+PAF
Sbjct  89   ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSL--LILMPAF  146

Query  179  LTSELKTAFQIGFLVFLPFLVIDIVVAAVlmsmgmmmlspmiislpFKLMLFVLIDGWTL  238
              S+L+ AF+IG+L+FLPF+ ID++V+ +L++MGMMM+SPM +SLPFKL++FVL+DGW+L
Sbjct  147  TLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSL  206

Query  239  IIGTLATSF  247
            ++G L  S+
Sbjct  207  VLGQLVGSY  215

771) Sulac_3139 in NC_016884


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 94.4 bits (339),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 83/207 (41%), Positives = 142/207 (69%), Gaps = 6/207 (2%)

Query  49   SILALLTLMAFIPGLLLTMTAFTRVITVLSFTRSALGLQQTPPNQVLVGLALFLTFFIMQ  108
             ++ALL +++ +P L++  TAF ++  V+S+ R+ALG+QQ PPN  + GLAL LT+FIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  109  PTLTAINHQALHPYLTGHLTLV--EAGRRALGPLRQFMYHETRPSDLALFLQLDHVH-AP  165
            P    ++ +  +  L+ ++  +  + ++ AL P R+F+ ++T   ++++F ++ +   + 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  166  RTLAGVPTAALI---PAFIISELKTAFEIGVYIFIPFVMIDLVVSTVLMSMGMMMVpptl  222
            R   +V   +L+   PAF +S+L+ AF IG+ +F+PFV IDL+VS +L++MGMMMV+P  
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  223  islplklllfvlANGWSLVVQSLVMSF  249
            +SLP+KLL+FVL +GWSLV+  LV S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

772) fliP in NC_015757


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 94.4 bits (339),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 83/207 (41%), Positives = 142/207 (69%), Gaps = 6/207 (2%)

Query  49   SILALLTLMAFIPGLLLTMTAFTRVITVLSFTRSALGLQQTPPNQVLVGLALFLTFFIMQ  108
             ++ALL +++ +P L++  TAF ++  V+S+ R+ALG+QQ PPN  + GLAL LT+FIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  109  PTLTAINHQALHPYLTGHLTLV--EAGRRALGPLRQFMYHETRPSDLALFLQLDHVH-AP  165
            P    ++ +  +  L+ ++  +  + ++ AL P R+F+ ++T   ++++F ++ +   + 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  166  RTLAGVPTAALI---PAFIISELKTAFEIGVYIFIPFVMIDLVVSTVLMSMGMMMVpptl  222
            R   +V   +L+   PAF +S+L+ AF IG+ +F+PFV IDL+VS +L++MGMMMV+P  
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  223  islplklllfvlANGWSLVVQSLVMSF  249
            +SLP+KLL+FVL +GWSLV+  LV S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

773) hscR in NC_014366


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 94.1 bits (338),  Expect = 6e-21, Method: Compositional matrix adjust.
 Identities = 87/199 (44%), Positives = 147/199 (74%), Gaps = 4/199 (2%)

Query  22   PFVAVMVTAFTKlvvvlsllrnslglQQTPPNVVLNGLAIILSLYVMYPVLLQTQSLITS  81
            P++ VM TAF KL VV+SLLRN+LG+QQ PPN+ + GLA++L++++M PV L+ Q+ + +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  82   HLKETPEAKLTVDRLIEIFDVGKKPLKDFLIRHSKESERHFFLESARQLLPEEDRNNIHE  141
            +  E ++   ++ + I+  + +  P +DFL R++   +  FF +  ++  PE  R+++  
Sbjct  81   E--ELSNDIGALAHQID--QNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKP  136

Query  142  DDFLVIVPAFTVSELSAAFQigfllflpfliidllVSNLLMALGIAMLSPTQVSLPFKLL  201
            D +L+++PAFT+S+L+ AF+IG+LLFLPF+ IDL+VSN+L+A+G+ M+SP  +SLPFKLL
Sbjct  137  DSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLL  196

Query  202  LFVFISGWTQLIHGLVLTY  220
            +FV++ GW+ ++  LV +Y
Sbjct  197  VFVLVDGWSLVLGQLVGSY  215

774) NAL212_0476 in NC_015222


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 93.6 bits (336),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 85/193 (45%), Positives = 137/193 (71%), Gaps = 12/193 (6%)

Query  63   MMSSFTRIIIVLSLLRMALGTQSSPPNQVLLGLALFLTFFIMSPV----IDRVYSEAYLP  118
            M ++F ++ +V+SLLR ALG Q  PPN  + GLAL LT+FIM+PV      R+ +E    
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEE---  82

Query  119  FSEDKISIMEAAEKAS-VPLKSFMLHQTRETDLALFVQISESEELES-RDQV---PLKIL  173
            +S+D  ++ +  ++ + VP + F+ ++T   ++++F +I ++   E  RD V   +L IL
Sbjct  83   LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLIL  142

Query  174  VPAYITSELKTAFQIGFVIFIPFLIIDlvvssvlmamgmmmlspmIISLPFKLMLFVLVD  233
            +PA+  S+L+ AF+IG+++F+PF+ IDL+VS++L+AMGMMM+SPM +SLPFKL++FVLVD
Sbjct  143  MPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVD  202

Query  234  GWHLIIGSLTQSF  246
            GW L++G L  S+
Sbjct  203  GWSLVLGQLVGSY  215

775) fliP in NC_008344


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 93.3 bits (335),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 136/200 (68%), Gaps = 16/200 (8%)

Query  71   PATVLMMSSFTRIIIVLSLLRQALGTQSSPPNQVLVGLALFLSFFIMSPV----IDKMYT  126
            P  V+M ++F ++ +V+SLLR+ALG Q  PPN  + GLAL L++FIM+PV      ++  
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  127  EAYLPFSEDKISIIEAMDKAS-DPLKIFMLRQTRETDIALFARISGSE------EIESPD  179
            E    +S+D  ++ + +D+ +  P + F+ R+T   ++++F  I  +       +   PD
Sbjct  81   EE---LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPD  137

Query  180  QVPMKILVPAYITSELKTAFQIGFIVFIPFLIIDMVVASTLmamgmmmlspmiislpFKL  239
              ++ IL+PA+  S+L+ AF+IG+++F+PF+ ID++V++ L+AMGMMM+SPM +SLPFKL
Sbjct  138  --SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL  195

Query  240  MLFVLVDGWHLLIGSLTQSF  259
            ++FVLVDGW L++G L  S+
Sbjct  196  LVFVLVDGWSLVLGQLVGSY  215

776) EAT1b_2929 in NC_012673


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 93.1 bits (334),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 75/187 (41%), Positives = 131/187 (71%), Gaps = 6/187 (3%)

Query  40   TCFTRVVVVLSFIRPALGTQQTPPNQLIVGLALFITLFVMSPVLSDLNENALKPYLDDKI  99
            T F ++ VV+S++R ALG QQ PPN  I GLAL +T+F+M+PV  D++    +  L + I
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  100  SQ-DEAFDEAS-GTMKEFMSKYTRQEDLQLFLKYGNYEQPE----TLDDVPLLALVPAYA  153
            +   + +D+ +    ++F+ + T  E++ +F    +   PE    ++   +LL L+PA++
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  154  ISELKTAFQIGFMIFLPFLIIDmvvasvlmsmgmmmlppvmIALPFKLLLFVLVDGWHLI  213
            +S+L+ AF+IG+++FLPF+ ID++V+++L++MGMMM++P+ ++LPFKLL+FVLVDGW L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  214  VESLLRS  220
            +  L+ S
Sbjct  208  LGQLVGS  214

777) fliP in NC_009659


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 92.8 bits (333),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 79/195 (41%), Positives = 138/195 (71%), Gaps = 6/195 (3%)

Query  63   PAVLLMMTSFTRIIIVLSLLRQALGTQSSPPNQVIIGLSLFLTLFVMSPV-LDKIYVDAY  121
            P +++M T+F ++ +V+SLLR+ALG Q  PPN  I GL+L LT+F+M+PV LD       
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  122  QPFSQNKIQMQEALD-KAVAPLKTFMIKQTRESDLALYVKL--SKGPEL--QGPEDIPLR  176
            + +S++   + + +D +A+ P + F+ ++T   +++++  +  +K PE   ++    +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  177  ILVPAFVTSELKTAFQISFAIFIPFLIIDmvvasvlmsmgmmmvsPAIVALPFKLMLFVL  236
            IL+PAF  S+L+ AF+I++ +F+PF+ ID++V+++L++MGMMMVSP  ++LPFKL++FVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  237  VDGWQLLIGSLAQSF  251
            VDGW L++G L  S+
Sbjct  201  VDGWSLVLGQLVGSY  215

778) fliP in NC_006348


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 92.8 bits (333),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 72/178 (41%), Positives = 123/178 (70%), Gaps = 6/178 (3%)

Query  3    SLLRQAIGTASTPPNQVLVGLALFLTLFVMSPV-LDRAYNDAYKPFSEGTLQMDQAVQRG  61
            SLLR+A+G    PPN  + GLAL LT+F+M+PV LD         +S++   + + +++ 
Sbjct  38   SLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQN  97

Query  62   T-APFKAFMLKQTRETDLALFAKISKAA-PMQGPEDV---PLSLLVPAFVTSELKTGFQI  116
            +  P++ F+ ++T   ++++F  I +   P +  + V   +L +L+PAF  S+L+ +F+I
Sbjct  98   ALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKI  157

Query  117  GFTIFIPFLIIDmvvasvlmsmgmmmvsPATVSLPFKLMLFVLVDGWQLLIGSLAQSF  174
            G+ +F+PF+ ID++V+++L++MGMMMVSP T+SLPFKL++FVLVDGW L++G L  S+
Sbjct  158  GLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

779) Fraau_2088 in NC_017033


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 92.8 bits (333),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 131/188 (70%), Gaps = 8/188 (4%)

Query  78   SFTRIIIVLSFLRQALGTNQTPSNQIllglalfltlFIMTPV---LDQSYTQGFKPYMAG  134
            +F ++ +V+S+LR+ALG +Q P+N  + GLAL LT+FIM+PV   ++    +   +   G
Sbjct  29   AFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIG  88

Query  135  TLSAEQAMPLALAPFKHFMVEQTRDPDLQLFSKLAHQ---GPYAANAD-IPLRVLVPSFV  190
            +L+ +     AL P+++F+  +T   ++ +F+ + ++     Y  +    +L +L+P+F 
Sbjct  89   ALAHQIDQN-ALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  191  TSELKTAFEMSFLLYIPFLIIDLIVASVlmsmgmmmlsPTLISLPFKILLFVLVDGWSLL  250
             S+L+ AF +++LL++PF+ IDLIV+++L++MGMMM+SP  +SLPFK+L+FVLVDGWSL+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  251  LGTLAGSF  258
            LG L GS+
Sbjct  208  LGQLVGSY  215

780) fliP in NC_013859


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 92.6 bits (332),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 95/222 (43%), Positives = 146/222 (66%), Gaps = 25/222 (11%)

Query  64   IVLLTVLSVAPGLLIMVTCFTRIIVVLSLLRSALGLQQSPPNMVLVSLAMFLTFHIMGPV  123
            I LL +LSV P L++M T F ++ VV+SLLR+ALG+QQ PPN+ + +LA+ LT+ IM+PV
Sbjct  11   IALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  124  IDSAWQDGLRPLLNEQVTQEQG-LERMIE-----PFRGFMASHVRERDLaafaaftakpk  177
                  D    L NE+++++ G L + I+     P+R+F+  +    +++ F        
Sbjct  71   G----LDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFF--------  118

Query  178  paGEEAAQP--PEKDGRPVTAESVDLRLLMPAFLLSELRRAFEIGFLLFLPFLVIDmvva  235
               ++  Q   PE+   +V ++S  L +LMPAF LS+L  AF IG+LLFLPF+ ID++V+
Sbjct  119  ---NDIVQNKWPERYRDSVKPDS--LLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVS  173

Query  236  ailmamgmmmlppvmiaLPFKIIFFVLTDGWFLIAGSLIRSY  277
             IL+AMGMMM++P+ ++LPFK++ FVL DGW L+ G L+ SY
Sbjct  174  NILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

781) Theco_2089 in NC_019897


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 92.3 bits (331),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 79/188 (43%), Positives = 133/188 (71%), Gaps = 6/188 (3%)

Query  60   PAILVLMTSFTRIVVVLGFVRMSLGTQTSPPNQVIIGLALFLTLFIMAPTLSEVNSTALQ  119
            P ++V+ T+F ++ VV++++R +LG Q  PPN  I GLAL LT+FIMAP   +V++   +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  120  PYLRGEMTQ-TEALEAAA-VPMKEFMAKHTREKDLLLFMRYAQMERP----ASVEDIPLT  173
              L  ++   ++ ++  A VP ++F+ ++T   ++ +F    Q  +P     SV   +L 
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  174  VLVPAFAISELKTAFQMGFMIFIPFLIIDMIVsstlmamgmmmlppmmislpFKILLFVL  233
            +L+PAF++S+L+ AF++G+++F+PF+ ID+IVS+ L+AMGMMM++PM +SLPFK+L+FVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  234  VDGWYLVV  241
            VDGW LV+
Sbjct  201  VDGWSLVL  208

782) fliP in NC_014366


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 91.8 bits (329),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 90/208 (44%), Positives = 155/208 (75%), Gaps = 7/208 (3%)

Query  50   QVLGFMTVLTLLPAIVLMMTAFTRIIIVFSILRQAIGLQQAPSNQILVGLALFLTLFVMR  109
            Q+++++ +L++LP +V+M TAF ++ +VFS+LR+A+G+QQ P+N  + GLAL LT+F+M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  110  PV-FDEINRVAVEPYQAEKIDGM--QAIQAASGPLRKFMMAQIREADLTLFIELAGEQ--  164
            PV +D   R+  E   ++ I+++  Q  Q A  P R F+  +    ++T+F ++  ++  
Sbjct  69   PVGLDVQARLQNEE-LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  165  DRYHE-VDEVPLTIIIPAFITSELKTAFQIGfllfipfliiDmvvasvlmamgmmmlspm  223
            +RY++ V   +L I++PAF  S+L+ AF+IG+LLF+PF+ ID++V+++L+AMGMMM+SPM
Sbjct  128  ERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPM  187

Query  224  iislpFKIMLFVFVDGWAMVVGSLAASY  251
             +SLPFK+++FV+VDGW++V+G L +SY
Sbjct  188  TLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

783) Ethha_2563 in NC_014828


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 91.5 bits (328),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 77/190 (41%), Positives = 132/190 (70%), Gaps = 6/190 (3%)

Query  83   MMTSFTRIIIFLSFLRNALGTQQTPPNQVLVGIALFLSLFIMSPVINQINTTAYQPLVNG  142
            M T+F ++ + +S+LRNALG QQ PPN  + G+AL L++FIM+PV  ++++   +  ++ 
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85

Query  143  QITT--EQAEVNAMKPLRQFMFKQTENASLKTFLSMAGTP-TVKSLDNI-PNSVLI--PA  196
            +I +  +Q + NA+ P R+F+ ++T+   +  F  +       +  D++ P+S+LI  PA
Sbjct  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145

Query  197  FVISELKRAFMMGFLIYLPFLIIDVIVgttlmsmgmmmlpptmISLPLKLALFVLVDGWG  256
            F +S+L+ AF +G+L++LPF+ ID+IV+  L++MGMMM++P  +SLP+KL +FVLVDGW+
Sbjct  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205

Query  257  LTVQSLVYSF  266
            L +  LV S+
Sbjct  206  LVLGQLVGSY  215

784) Q7A_2938 in NC_017857


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 91.0 bits (326),  Expect = 5e-20, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 135/194 (70%), Gaps = 20/194 (10%)

Query  63   SFTRIIIVLAILRQAMGVQSTPSNQIMIGLALFLTFFIMSPVFSTAYENGVQPYMDGD--  120
            +F ++ +V+++LR+A+GVQ  P+N  + GLAL LT+FIM+PV       +VQ+ ++ +  
Sbjct  29   AFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV-----GLDVQARLQNEEL  83

Query  121  -IEATAAIEQVSQ----PFREFMLAQTRESDIALFAEI------GGYSAIESPDDVPFSL  169
              +  A  +Q+ Q    P+R+F+  +T   ++++F +I        Y     PD  ++ +
Sbjct  84   SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPD--SLLI  141

Query  170  LLPAFVTSELKTAFQIGFLIFVPFLIIDlvvasvlmamgmmmlspmlislpFKLMLFVLI  229
            L+PAF  S+L+ AF+IG+L+F+PF+ IDL+V+++L+AMGMMM+SPM +SLPFKL++FVL+
Sbjct  142  LMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLV  201

Query  230  DGWALLMGTLASSF  243
            DGW+L++G L +S+
Sbjct  202  DGWSLVLGQLVGSY  215

785) fliP in NC_008709


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 89.4 bits (320),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 87/210 (42%), Positives = 147/210 (70%), Gaps = 12/210 (5%)

Query  44   QILILMTALSFIPAFILMCTCFTRIIIVLAILRQALGLQQSPPNQVllgialalsiliMK  103
            Q++ L+  LS +P +++M T F ++ +V+++LR+ALG+QQ PPN  + G+AL L+I+IM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  104  PVWTDV---YDNAFVPYDAGDISLLTAASIAEKPVREFMLRQTHSSSLEQMMNIAGED--  158
            PV  DV    +N  ++ D G ++     + A  P R+F+ R+T+   +    +I  +   
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQN-ALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  159  ----ENVKPEDISFAIILPAFVISELKTAFQIGFMLFMPFLIIDlvvasvlmsmgmmmls  214
                ++VKP+  S+ I++PAF +S+L+ AF+IG++LF+PF+ IDL+V+++L++MGMMM+S
Sbjct  128  ERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVS  185

Query  215  PLIVSLPFKLLAFVLVDGWTMLVGSLSTSF  244
            P+ +SLPFKLL FVLVDGW++++G L  S+
Sbjct  186  PMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

786) fliP in NC_007759


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 89.1 bits (319),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 93/209 (45%), Positives = 157/209 (76%), Gaps = 9/209 (4%)

Query  59   VIQLLFILTVLSLTPAILLMLTSFTRIVIVLSLLRQAMGTQQMPSNQIIIGLSLFLTFFI  118
            +I LLF+L+VL+L   +++M T+F ++ +V+SLLR+A+G QQ+P+N  I GL+L LT+FI
Sbjct  10   LIALLFMLSVLPL---LVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFI  66

Query  119  MSPVWQSVHSEALKPYYDEEIS--GEQAIERAVIPVKAFMLKQTREKDIALFLQISKGKR  176
            M+PV   V++   +    ++I+  ++Q  + A++P + F+ ++T   ++++F +I + K+
Sbjct  67   MAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  177  PEKPADL----ALSVLVPAFVISELKTAfqigfllflpffiiDmvvasvllsmgmmmlpp  232
            PE+  D     +L +L+PAF +S+L+ AF+IG+LLFLPF  ID++V+++LL+MGMMM++P
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  233  immslpFKLLLFVLVDGWYLIIGSLVQSF  261
            + +SLPFKLL+FVLVDGW L++G LV S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

787) fliP in NC_017080


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 88.9 bits (318),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 84/207 (41%), Positives = 136/207 (66%), Gaps = 32/207 (15%)

Query  79   MCTCFTRIVIVLGLLRQAMGTAALPPTQVITGLALLLTFLVMAP-AFE---RVRQEALVP  134
            M T F ++ +V++LLR+A+G   +PP   I GLAL+LT+++MAP +++   R+++E L  
Sbjct  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85

Query  135  YQAGEITQLQAWENAKQPLRDFM-----------FDQIDHADNWDGVYMMLEYQGVDLSE  183
             + G +++ Q  +NA  P RDF+           F++I + ++W   Y        D   
Sbjct  86   -DIGALAH-QIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ-NKWPERYR-------DSVK  135

Query  184  PENLVRGDVDMLALVPAFVLSELKIAFLMGFRLYLPFLIIDmvissilismgmmmLPPVL  243
            P++L       L L+PAF LS+L+ AF +G+ L+LPF+ ID+++S+IL++MGMMM++P+ 
Sbjct  136  PDSL-------LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  244  ISLPFKLLLFVLVDGWRLVVGGLLESF  270
            +SLPFKLL+FVLVDGW LV+G L+ S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

788) fliP2 in NC_016624


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 88.6 bits (317),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 90/222 (41%), Positives = 143/222 (65%), Gaps = 28/222 (12%)

Query  46   IVLLTVLSVAPGLLIMVTCFTRIIVVLSLLRSALGLQQSPPNMVLVSLAMFLTFHIMGPT  105
            I LL +LSV P L++M T F ++ VV+SLLR+ALG+QQ PPN+ + +LA+ LT+ IM+P 
Sbjct  11   IALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  106  -MDSAWQEGLRPLLNEQVTQEQG-LERMIE-----PFRGFMASHVRERDLaafaaftakp  158
             +D         L NE+++++ G L + I+     P+R+F+  +    +++ F       
Sbjct  71   GLDVQ-----ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFF-------  118

Query  159  kpaGEDGAAKDDRPV----TAESVDLRLLMPAFLLSELRRAFEIGFLLFLPFLVIDmvva  214
                 ++  ++ +P     +  +  L +LMPAF LS+L  AF IG+LLFLPF+ ID++V+
Sbjct  119  -----NDIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVS  173

Query  215  ailmamgmmmlppvmiaLPFKIIFFVLTDGWFLIAGSLIRSY  256
             IL+AMGMMM++P+ ++LPFK++ FVL DGW L+ G L+ SY
Sbjct  174  NILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

789) fliP in NC_011420


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 87.8 bits (314),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 88/219 (41%), Positives = 145/219 (67%), Gaps = 14/219 (6%)

Query  47   QVVALVTILSVAPGLLVMVTSFTRIVVVLSLLRSALGLQQTPPNMVllglalllTAYVMG  106
            Q++AL+ +LSV P L+VM T+F ++ VV+SLLR+ALG+QQ PPN+ + GLAL+LT ++M+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  PT-LDRSWREGVQPMVDGQITEEQAFER-IVEPFRDFMQAHVRPKDLELFRSFEAGTKsg  164
            P  LD   R   + + ++  +  + +++  + P+RDF+Q +    ++ +F  +     + 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  165  aapaagsagpapsteeaasapgLRTLIAAFVISELRRAFEIGFLLFLPFLVIDmiiaavl  224
                +  +++            L  L++AF +S+L  AF IG+LLFLPF+ ID+I++ +L
Sbjct  129  RYRDSVKPDS------------LLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNIL  176

Query  225  mamgmmmlppviISLPFKIIFFVMVDGWLLVAGALVRSY  263
            +AMGMMM++P+ +SLPFK++ FV+VDGW LV G LV SY
Sbjct  177  LAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

790) Mpop_0498 in NC_010725


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 87.6 bits (313),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 88/211 (42%), Positives = 147/211 (70%), Gaps = 6/211 (2%)

Query  47   ERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSLALFLTA  106
            + + QL+AL+ +L++ P ++VM+T+F ++ VV+S+LR+ALG Q  PPN  + +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  107  FVMAPTAREA-YRAGVEPLVAGQISQSQAFERAS-APFKTFMLRNVREKDLKLFLDMARQ  164
            F+MAP + +   R   E L  +  + ++ +++ +  P++ F+ RN    ++ +F D+ ++
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  165  PAP----AGPEAIGLEIVTPAFMISELRRAfeigfllfipfliidlvvasvlmamgmmml  220
              P     +  + +L I+ PAF +S+L  AF IG+LLF+PF+ IDL+V+++L+AMGMMM+
Sbjct  125  KWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  221  ppaTVALPFKLIFFVLVDGWTLVAGSLIQSY  251
            +P T++LPFKL+ FVLVDGW+LV G L+ SY
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

791) Mchl_0461 in NC_011757


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 87.6 bits (313),  Expect = 7e-19, Method: Compositional matrix adjust.
 Identities = 87/211 (42%), Positives = 146/211 (70%), Gaps = 6/211 (2%)

Query  47   ERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSLALFLTA  106
            + + QL+AL+ +L++ P ++VM+T+F ++ VV+S+LR+ALG Q  PPN  + +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  107  FVMAPTAREA-YRTGVEPLMAGQISQSQAFERAS-APFKTFMLRNVREKDLKLFLDMAR-  163
            F+MAP + +   R   E L  +  + ++ +++ +  P++ F+ RN    ++ +F D+ + 
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  164  ---QPAPAGPEAIGLEIVTPAFMISELRRAfeigfllfipfliidlvvasvlmamgmmml  220
               +    +  + +L I+ PAF +S+L  AF IG+LLF+PF+ IDL+V+++L+AMGMMM+
Sbjct  125  KWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  221  ppaTVALPFKLIFFVLVDGWTLVAGSLIQSY  251
            +P T++LPFKL+ FVLVDGW+LV G L+ SY
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

792) fliP in NC_012808


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 87.6 bits (313),  Expect = 7e-19, Method: Compositional matrix adjust.
 Identities = 87/211 (42%), Positives = 146/211 (70%), Gaps = 6/211 (2%)

Query  47   ERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSLALFLTA  106
            + + QL+AL+ +L++ P ++VM+T+F ++ VV+S+LR+ALG Q  PPN  + +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  107  FVMAPTAREA-YRTGVEPLMAGQISQSQAFERAS-APFKTFMLRNVREKDLKLFLDMAR-  163
            F+MAP + +   R   E L  +  + ++ +++ +  P++ F+ RN    ++ +F D+ + 
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  164  ---QPAPAGPEAIGLEIVTPAFMISELRRAfeigfllfipfliidlvvasvlmamgmmml  220
               +    +  + +L I+ PAF +S+L  AF IG+LLF+PF+ IDL+V+++L+AMGMMM+
Sbjct  125  KWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  221  ppaTVALPFKLIFFVLVDGWTLVAGSLIQSY  251
            +P T++LPFKL+ FVLVDGW+LV G L+ SY
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

793) fliP in NC_012988


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 87.6 bits (313),  Expect = 7e-19, Method: Compositional matrix adjust.
 Identities = 87/211 (42%), Positives = 146/211 (70%), Gaps = 6/211 (2%)

Query  47   ERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSLALFLTA  106
            + + QL+AL+ +L++ P ++VM+T+F ++ VV+S+LR+ALG Q  PPN  + +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  107  FVMAPTAREA-YRTGVEPLMAGQISQSQAFERAS-APFKTFMLRNVREKDLKLFLDMAR-  163
            F+MAP + +   R   E L  +  + ++ +++ +  P++ F+ RN    ++ +F D+ + 
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  164  ---QPAPAGPEAIGLEIVTPAFMISELRRAfeigfllfipfliidlvvasvlmamgmmml  220
               +    +  + +L I+ PAF +S+L  AF IG+LLF+PF+ IDL+V+++L+AMGMMM+
Sbjct  125  KWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  221  ppaTVALPFKLIFFVLVDGWTLVAGSLIQSY  251
            +P T++LPFKL+ FVLVDGW+LV G L+ SY
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

794) Mext_0427 in NC_010172


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 87.3 bits (312),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 88/211 (42%), Positives = 147/211 (70%), Gaps = 6/211 (2%)

Query  47   ERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSLALFLTA  106
            + + QL+AL+ +L++ P ++VM+T+F ++ VV+S+LR+ALG Q  PPN  + +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  107  FVMAPTAREA-YRTGVEPLMAGQISQSQAFERAS-APFKTFMLRNVREKDLKLFLDMARQ  164
            F+MAP + +   R   E L  +  + ++ +++ +  P++ F+ RN    ++ +F D+ ++
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  165  PAP----AGPEAIGLEIVTPAFMISELRRAfeigfllfipfliidlvvasvlmamgmmml  220
              P     +  + +L I+ PAF +S+L  AF IG+LLF+PF+ IDL+V+++L+AMGMMM+
Sbjct  125  KWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  221  ppaTVALPFKLIFFVLVDGWTLVAGSLIQSY  251
            +P T++LPFKL+ FVLVDGW+LV G L+ SY
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

795) fliP in NC_018286


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 85.5 bits (305),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 87/215 (41%), Positives = 138/215 (65%), Gaps = 13/215 (6%)

Query  40   ARSIQLILLITVLSLAPGLLIMITCFPFLVTVLSILRQAIGLQQAPPNMLMISLALFLTY  99
              S QLI L+ +LS+ P L++M T F  L  V+S+LR+A+G+QQ PPN+ + +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  100  FVMEPVFTEAWTTGINPLIEEQLDVETGL------ERALQPFRVFM--AARLDPDTFYA-  150
            F+M PV  +        L +E+L  + G       + AL P+R F+   + ++  TF+  
Sbjct  65   FIMAPVGLDV----QARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  151  IADLRPSTAGIDPTADAPLSTLVSSFMLSEIARAFQVGFLVFLPFLVIDlvvaavlmsmg  210
            I + + +    D+    +L  L+++F LS++  AF++G+L+FLPF+ IDL+V+ +L++MG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  211  mmmvppavvsmpFKLAFFVVADGWSLIASALVRSY  245
            MMMV+P  +S+PFKL  FV+ DGWSL+ + LV SY
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

796) fliP in NC_018290


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 85.5 bits (305),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 87/215 (41%), Positives = 138/215 (65%), Gaps = 13/215 (6%)

Query  40   ARSIQLILLITVLSLAPGLLIMITCFPFLVTVLSILRQAIGLQQAPPNMLMISLALFLTY  99
              S QLI L+ +LS+ P L++M T F  L  V+S+LR+A+G+QQ PPN+ + +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  100  FVMEPVFTEAWTTGINPLIEEQLDVETGL------ERALQPFRVFM--AARLDPDTFYA-  150
            F+M PV  +        L +E+L  + G       + AL P+R F+   + ++  TF+  
Sbjct  65   FIMAPVGLDV----QARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120

Query  151  IADLRPSTAGIDPTADAPLSTLVSSFMLSEIARAFQVGFLVFLPFLVIDlvvaavlmsmg  210
            I + + +    D+    +L  L+++F LS++  AF++G+L+FLPF+ IDL+V+ +L++MG
Sbjct  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180

Query  211  mmmvppavvsmpFKLAFFVVADGWSLIASALVRSY  245
            MMMV+P  +S+PFKL  FV+ DGWSL+ + LV SY
Sbjct  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

797) fliP in NC_010337


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 83.4 bits (297),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 79/196 (41%), Positives = 140/196 (72%), Gaps = 8/196 (4%)

Query  54   PSILIMMTCFTRIIVVLHFTRTALALQTMPPNQVLIGltlfltffIMAPTWSAINDQALQ  113
            P +++M T F ++ VV+ + R AL++Q +PPN  + GL+L LT+FIMAP    ++ +  +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  114  PYLA---GTLSQEQALEKASTPLREFMLKQTREKDLALFVNMSDMEQPQTYRDI----PI  166
              L+   G+L+++   ++A  P R+F+ ++T   ++++F ++ +   P+ YRD     ++
Sbjct  81   EELSNDIGALAHQID-QNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSL  139

Query  167  KVVIPAFILSELKTAFQIGAVIYLPFIVIDmivgsvlmsmgmmmlppmmislpFKVLVFV  226
             +++PAF LS+L+ AF+IG +++LPF+ ID+IV+++L++MGMMM++PM +SLPFK+LVFV
Sbjct  140  LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFV  199

Query  227  LVDGWYLIVRSLILSY  242
            LVDGW L++  L+ SY
Sbjct  200  LVDGWSLVLGQLVGSY  215

798) fliP in NC_017538


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 82.3 bits (293),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 96/212 (46%), Positives = 145/212 (69%), Gaps = 8/212 (3%)

Query  45   ERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNSVMIALALFLTG  104
            + + QLIALL +LS+ P ++VM T+F ++ VV+SLLR ALG    PPN  + +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  105  FVMGPV---LQKSYDEGVKPVIANELSVEQGFERAVGPLRGFMQKNVREKDLKLFMDLSG  161
            F+M+PV   +Q   ++   +     L+ + + + A+ P R+F+Q+N    ++ +F D+  
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGALAHQID-QNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  162  EPPP----ATPEEMSLRILIPAFMISELKRAFEigfllflpfliidlvvssvlmsmgmmm  217
            +  P     +    SL IL+PAF +S+L+ AF IG+LLFLPF+ IDL+VS++L++MGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  218  lppvvvslpFKLIFFVLVDGWALVAGSLVQSY  249
            ++P+ +SLPFKL+ FVLVDGW+LV G LV SY
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

799) fliP in NC_011386


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 82.3 bits (293),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 96/212 (46%), Positives = 145/212 (69%), Gaps = 8/212 (3%)

Query  45   ERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNSVMIALALFLTG  104
            + + QLIALL +LS+ P ++VM T+F ++ VV+SLLR ALG    PPN  + +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  105  FVMGPV---LQKSYDEGVKPVIANELSVEQGFERAVGPLRGFMQKNVREKDLKLFMDLSG  161
            F+M+PV   +Q   ++   +     L+ + + + A+ P R+F+Q+N    ++ +F D+  
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGALAHQID-QNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  162  EPPP----ATPEEMSLRILIPAFMISELKRAFEigfllflpfliidlvvssvlmsmgmmm  217
            +  P     +    SL IL+PAF +S+L+ AF IG+LLFLPF+ IDL+VS++L++MGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  218  lppvvvslpFKLIFFVLVDGWALVAGSLVQSY  249
            ++P+ +SLPFKL+ FVLVDGW+LV G LV SY
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

800) fliP in NC_015684


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 82.3 bits (293),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 96/212 (46%), Positives = 145/212 (69%), Gaps = 8/212 (3%)

Query  45   ERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNSVMIALALFLTG  104
            + + QLIALL +LS+ P ++VM T+F ++ VV+SLLR ALG    PPN  + +LAL LT 
Sbjct  5    NSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  105  FVMGPV---LQKSYDEGVKPVIANELSVEQGFERAVGPLRGFMQKNVREKDLKLFMDLSG  161
            F+M+PV   +Q   ++   +     L+ + + + A+ P R+F+Q+N    ++ +F D+  
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIGALAHQID-QNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  162  EPPP----ATPEEMSLRILIPAFMISELKRAFEigfllflpfliidlvvssvlmsmgmmm  217
            +  P     +    SL IL+PAF +S+L+ AF IG+LLFLPF+ IDL+VS++L++MGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  218  lppvvvslpFKLIFFVLVDGWALVAGSLVQSY  249
            ++P+ +SLPFKL+ FVLVDGW+LV G LV SY
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

801) fliP in NC_008699


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 81.0 bits (288),  Expect = 6e-17, Method: Compositional matrix adjust.
 Identities = 87/192 (46%), Positives = 135/192 (71%), Gaps = 14/192 (7%)

Query  83   TAFTKIFVVLGLTRNALGLQQTPPNQVLAGLALFLSLFVMGPVLSDINEVGLQPYLNGDK  142
            TAF K+ VV++L RNALG+QQ PPN  + GLAL L++F+M+PV  D+ +  LQ   N + 
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDV-QARLQ---NEEL  83

Query  143  TTSVAI------QDGIEPLRDFMLDNTDDDELMLLTNVAGRDLPED-RADVSTATL---I  192
            +  ++       Q+++ P RDF+  NTD +++ ++ ++     PE  R  V   +L   +
Sbjct  84   SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  193  PAFVLTELKQAfiigfiifipflviDLVvsgalmalgmmmmppvmvslpFKLLLFVLVDG  252
            PAF L++L++AF IG+++F+PF+ IDL+VS  L+A+GMMM++P+ +SLPFKLL+FVLVDG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  253  WALVIKSLVASY  264
            W+LV+  LV+SY
Sbjct  204  WSLVLGQLVGSY  215

802) fliP in NC_009092


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 80.5 bits (286),  Expect = 9e-17, Method: Compositional matrix adjust.
 Identities = 86/212 (41%), Positives = 149/212 (71%), Gaps = 16/212 (7%)

Query  53   QILLLMTALSFLPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMA  112
            Q++ L+  LS LP +V+M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  113  PV-FD---KIYDQAVKPYIDETMTIEQAYDKGK-EPLRAFMLAQTRLTDLETFVQI----  163
            PV +D   ++ ++ +    ++  ++ +  D+    P R F+  +T + ++  F +I    
Sbjct  69   PVGLDVQARLQNEELS---NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNK  125

Query  164  --SGYQNIQSPEDAPMSVLIPAFITSELKTAFQIGfmlfvpflvldlvvasilmamgmmm  221
                Y++   P+  ++ +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM
Sbjct  126  WPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  222  lspmiVSLPFKIMLFVLVDGWSLVMGTLANSF  253
            +SPM +SLPFK+++FVLVDGWSLV+G L  S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

803) Sput200_2731 in NC_017566


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 80.0 bits (284),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 86/209 (42%), Positives = 146/209 (70%), Gaps = 10/209 (4%)

Query  47   QILLLMTSLSFLPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMA  106
            Q++ L+  LS LP +V+M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  PVFDKIYDQGVKPYIDEQL-TLQQAFDKGK-EPLRAFMLGQVRTTDLKTFIDI------S  158
            PV   +  +  +  + +++ +L + +D+    P R F+  +    ++  F DI       
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  159  GYQNINSPEEAPMSVLVPAFITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlsp  218
             Y++   P+  ++ +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  219  miVSLPFKIMLFVLVDGWGLVLGTLANSF  247
            M +SLPFK+++FVLVDGW+LVLG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

804) fliP in NC_009438


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 80.0 bits (284),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 86/209 (42%), Positives = 146/209 (70%), Gaps = 10/209 (4%)

Query  47   QILLLMTSLSFLPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMA  106
            Q++ L+  LS LP +V+M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  PVFDKIYDQGVKPYIDEQL-TLQQAFDKGK-EPLRAFMLGQVRTTDLKTFIDI------S  158
            PV   +  +  +  + +++ +L + +D+    P R F+  +    ++  F DI       
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  159  GYQNINSPEEAPMSVLVPAFITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlsp  218
             Y++   P+  ++ +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  219  miVSLPFKIMLFVLVDGWGLVLGTLANSF  247
            M +SLPFK+++FVLVDGW+LVLG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

805) fliP in NC_008750


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 80.0 bits (284),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 86/209 (42%), Positives = 146/209 (70%), Gaps = 10/209 (4%)

Query  47   QILLLMTSLSFLPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMA  106
            Q++ L+  LS LP +V+M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  PVFDKIYDQGVKPYIDEQL-TLQQAFDKGK-EPLRAFMLGQVRTTDLKTFIDI------S  158
            PV   +  +  +  + +++ +L + +D+    P R F+  +    ++  F DI       
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  159  GYQNINSPEEAPMSVLVPAFITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlsp  218
             Y++   P+  ++ +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  219  miVSLPFKIMLFVLVDGWGLVLGTLANSF  247
            M +SLPFK+++FVLVDGW+LVLG L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

806) Sbal175_1440 in NC_017571


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 80.0 bits (284),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 85/212 (41%), Positives = 146/212 (69%), Gaps = 16/212 (7%)

Query  47   QILLLMTSLSFLPAMLIMLTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMA  106
            Q++ L+  LS LP +++M T+F ++ +V+S+LR+A+G+QQ P+N  + G++L +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  P----VFERIYDEGVKPYIEEQLTLQQAFEKGK-EPLKGFMLGQVRTTDLKTFIEI----  157
            P    V  R+ +E +   I    +L + +++    P ++F+  +    ++  F +I    
Sbjct  69   PVGLDVQARLQNEELSNDIG---ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNK  125

Query  158  --SGYKNIKSPEEAPMSVLIPAFITSELKTAFQIGfmlfvpflvldlvvasilmamgmmm  215
                Y++   P+  ++ +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM
Sbjct  126  WPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  216  lspmiVSLPFKIMLFVLVDGWSLVLGTLANSF  247
            +SPM +SLPFK+++FVLVDGWSLVLG L  S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

807) Sbal117_3054 in NC_017579


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 80.0 bits (284),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 85/212 (41%), Positives = 146/212 (69%), Gaps = 16/212 (7%)

Query  47   QILLLMTSLSFLPAMLIMLTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMA  106
            Q++ L+  LS LP +++M T+F ++ +V+S+LR+A+G+QQ P+N  + G++L +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  P----VFDRIYDEGVKPYIEEQLTLQQAFEKGK-EPLKGFMLGQVRTTDLKTFIEI----  157
            P    V  R+ +E +   I    +L + +++    P ++F+  +    ++  F +I    
Sbjct  69   PVGLDVQARLQNEELSNDIG---ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNK  125

Query  158  --SGYKNIKSPEEAPMSVLIPAFITSELKTAFQIGfmlfvpflvldlvvasilmamgmmm  215
                Y++   P+  ++ +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM
Sbjct  126  WPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  216  lspmiVSLPFKIMLFVLVDGWSLVLGTLANSF  247
            +SPM +SLPFK+++FVLVDGWSLVLG L  S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

808) fliP in NC_009052


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 80.0 bits (284),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 85/212 (41%), Positives = 146/212 (69%), Gaps = 16/212 (7%)

Query  47   QILLLMTSLSFLPAMLIMLTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMA  106
            Q++ L+  LS LP +++M T+F ++ +V+S+LR+A+G+QQ P+N  + G++L +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  P----VFDRIYDEGVKPYIEEQLTLQQAFEKGK-EPLKGFMLGQVRTTDLKTFIEI----  157
            P    V  R+ +E +   I    +L + +++    P ++F+  +    ++  F +I    
Sbjct  69   PVGLDVQARLQNEELSNDIG---ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNK  125

Query  158  --SGYKNIKSPEEAPMSVLIPAFITSELKTAFQIGfmlfvpflvldlvvasilmamgmmm  215
                Y++   P+  ++ +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM
Sbjct  126  WPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  216  lspmiVSLPFKIMLFVLVDGWSLVLGTLANSF  247
            +SPM +SLPFK+++FVLVDGWSLVLG L  S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

809) fliP in NC_009665


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 80.0 bits (284),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 85/212 (41%), Positives = 146/212 (69%), Gaps = 16/212 (7%)

Query  47   QILLLMTSLSFLPAMLIMLTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMA  106
            Q++ L+  LS LP +++M T+F ++ +V+S+LR+A+G+QQ P+N  + G++L +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  P----VFDRIYDEGVKPYIEEQLTLQQAFEKGK-EPLKGFMLGQVRTTDLKTFIEI----  157
            P    V  R+ +E +   I    +L + +++    P ++F+  +    ++  F +I    
Sbjct  69   PVGLDVQARLQNEELSNDIG---ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNK  125

Query  158  --SGYKNIKSPEEAPMSVLIPAFITSELKTAFQIGfmlfvpflvldlvvasilmamgmmm  215
                Y++   P+  ++ +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM
Sbjct  126  WPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  216  lspmiVSLPFKIMLFVLVDGWSLVLGTLANSF  247
            +SPM +SLPFK+++FVLVDGWSLVLG L  S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

810) fliP in NC_009997


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 80.0 bits (284),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 85/212 (41%), Positives = 146/212 (69%), Gaps = 16/212 (7%)

Query  47   QILLLMTSLSFLPAMLIMLTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMA  106
            Q++ L+  LS LP +++M T+F ++ +V+S+LR+A+G+QQ P+N  + G++L +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  P----VFDRIYDEGVKPYIEEQLTLQQAFEKGK-EPLKGFMLGQVRTTDLKTFIEI----  157
            P    V  R+ +E +   I    +L + +++    P ++F+  +    ++  F +I    
Sbjct  69   PVGLDVQARLQNEELSNDIG---ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNK  125

Query  158  --SGYKNIKSPEEAPMSVLIPAFITSELKTAFQIGfmlfvpflvldlvvasilmamgmmm  215
                Y++   P+  ++ +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM
Sbjct  126  WPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  216  lspmiVSLPFKIMLFVLVDGWSLVLGTLANSF  247
            +SPM +SLPFK+++FVLVDGWSLVLG L  S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

811) fliP in NC_011663


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 80.0 bits (284),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 85/212 (41%), Positives = 146/212 (69%), Gaps = 16/212 (7%)

Query  47   QILLLMTSLSFLPAMLIMLTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMA  106
            Q++ L+  LS LP +++M T+F ++ +V+S+LR+A+G+QQ P+N  + G++L +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  P----VFDRIYDEGVKPYIEEQLTLQQAFEKGK-EPLKGFMLGQVRTTDLKTFIEI----  157
            P    V  R+ +E +   I    +L + +++    P ++F+  +    ++  F +I    
Sbjct  69   PVGLDVQARLQNEELSNDIG---ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNK  125

Query  158  --SGYKNIKSPEEAPMSVLIPAFITSELKTAFQIGfmlfvpflvldlvvasilmamgmmm  215
                Y++   P+  ++ +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM
Sbjct  126  WPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  216  lspmiVSLPFKIMLFVLVDGWSLVLGTLANSF  247
            +SPM +SLPFK+++FVLVDGWSLVLG L  S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

812) Sbal678_3069 in NC_016901


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 80.0 bits (284),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 85/212 (41%), Positives = 146/212 (69%), Gaps = 16/212 (7%)

Query  47   QILLLMTSLSFLPAMLIMLTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMA  106
            Q++ L+  LS LP +++M T+F ++ +V+S+LR+A+G+QQ P+N  + G++L +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  P----VFDRIYDEGVKPYIEEQLTLQQAFEKGK-EPLKGFMLGQVRTTDLKTFIEI----  157
            P    V  R+ +E +   I    +L + +++    P ++F+  +    ++  F +I    
Sbjct  69   PVGLDVQARLQNEELSNDIG---ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNK  125

Query  158  --SGYKNIKSPEEAPMSVLIPAFITSELKTAFQIGfmlfvpflvldlvvasilmamgmmm  215
                Y++   P+  ++ +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM
Sbjct  126  WPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  216  lspmiVSLPFKIMLFVLVDGWSLVLGTLANSF  247
            +SPM +SLPFK+++FVLVDGWSLVLG L  S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

813) fliP in NC_008345


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 79.2 bits (281),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 85/209 (41%), Positives = 143/209 (69%), Gaps = 10/209 (4%)

Query  51   QILLLMTAMSFIPAMVIMLTSFTRIIVVLSILRQALGLQQTPSNQVLIGISLFMTFFIMA  110
            Q++ L+  +S +P +V+M T+F ++ VV+S+LR+ALG+QQ P+N  + G++L +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  111  PV-FDKIYAEAVEPYINETMTLTQAYDVGK-EPIKTFMLSQVRTTDLQTFIEI------S  162
            PV +D       E   N+  +L++  D     P + F+  +    ++  F +I       
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  163  GYKDIQSPEQAPMSVVIPAFITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlsp  222
             Y+D   P+  ++ +++PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  223  miVSLPFKIMLFVLVDGWGLVMGTLANSF  251
            M +SLPFK+++FVLVDGW+LV+G L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

814) fliP in NC_008577


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 78.4 bits (278),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 84/209 (41%), Positives = 146/209 (70%), Gaps = 10/209 (4%)

Query  47   QILLLMTSLSFIPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMA  106
            Q++ L+  LS +P +V+M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  PVFDKIYDQGVKPYIDEQL-TLQQAFDKGK-EPLRAFMLGQVRTTDLKTFIDI------S  158
            PV   +  +  +  + +++ +L + +D+    P R F+  +    ++  F DI       
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  159  GYQNINSPEEAPMSVLVPAFITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlsp  218
             Y++   P+  ++ +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  219  miVSLPFKIMLFVLVDGWGLVMGTLANSF  247
            M +SLPFK+++FVLVDGW+LV+G L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

815) fliP in NC_008321


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 78.4 bits (278),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 84/209 (41%), Positives = 146/209 (70%), Gaps = 10/209 (4%)

Query  47   QILLLMTSLSFIPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMA  106
            Q++ L+  LS +P +V+M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  PVFDKIYDQGVKPYIDEQL-TLQQAFDKGK-EPLRAFMLGQVRTTDLKTFIDI------S  158
            PV   +  +  +  + +++ +L + +D+    P R F+  +    ++  F DI       
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  159  GYQNINSPEEAPMSVLVPAFITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlsp  218
             Y++   P+  ++ +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  219  miVSLPFKIMLFVLVDGWGLVMGTLANSF  247
            M +SLPFK+++FVLVDGW+LV+G L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

816) fliP in NC_004347


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 78.4 bits (278),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 84/209 (41%), Positives = 146/209 (70%), Gaps = 10/209 (4%)

Query  47   QILLLMTSLSFIPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMA  106
            Q++ L+  LS +P +V+M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  PVFDKIYDQGVKPYIDEQL-TLQQAFDKGK-EPLRAFMLGQVRTTDLKTFIDI------S  158
            PV   +  +  +  + +++ +L + +D+    P R F+  +    ++  F DI       
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  159  GYQNINSPEEAPMSVLVPAFITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlsp  218
             Y++   P+  ++ +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  219  miVSLPFKIMLFVLVDGWGLVMGTLANSF  247
            M +SLPFK+++FVLVDGW+LV+G L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

817) fliP in NC_008322


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 78.4 bits (278),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 84/209 (41%), Positives = 146/209 (70%), Gaps = 10/209 (4%)

Query  47   QILLLMTSLSFIPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMA  106
            Q++ L+  LS +P +V+M T+F ++ VV+S+LR+A+G+QQ P+N  + G++L +T+FIMA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  107  PVFDKIYDQGVKPYIDEQL-TLQQAFDKGK-EPLRAFMLGQVRTTDLKTFIDI------S  158
            PV   +  +  +  + +++ +L + +D+    P R F+  +    ++  F DI       
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  159  GYQNINSPEEAPMSVLVPAFITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlsp  218
             Y++   P+  ++ +L+PAF  S+L+ AF+IG++LF+PF+ +DL+V++IL+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  219  miVSLPFKIMLFVLVDGWGLVMGTLANSF  247
            M +SLPFK+++FVLVDGW+LV+G L  S+
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

818) fliP in NC_003910


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 77.9 bits (276),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 86/209 (42%), Positives = 145/209 (70%), Gaps = 8/209 (3%)

Query  46   NLQILIFMTALSFIPAAVIMMTSFTRIVVVMAILRQAFGLQQTPSNQVIIGLTLFMTLFI  105
            +L  L+FM  LS +P  V+M T+F ++ VV ++LR+A+G+QQ P+N  I GL+L +T+FI
Sbjct  9    QLIALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFI  66

Query  106  MTPVYNQIDRTAIQPYLSENLTS-TEAINLGK-IPLRAFMLEQTRVKDL----DTLAAMA  159
            M+PV  +++    +  LS+++ + ++ I+    +P R F+  +T + ++    D +    
Sbjct  67   MAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKW  126

Query  160  GIDAVDEPTDLPMTVIIPAFIISELKTAFQigfilfipfliidlVVasilmamgmmmlsp  219
                 D     ++ +++PAF +S+L+ AF+IG++LF+PF+ IDL+V++IL+AMGMMM+SP
Sbjct  127  PERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  220  miVSLPFKLMLFVLVDGWNLVIGTIATSY  248
            M +SLPFKL++FVLVDGW+LV+G +  SY
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

819) MROS_2143 in NC_018178


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 76.8 bits (272),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 83/197 (43%), Positives = 144/197 (74%), Gaps = 10/197 (5%)

Query  62   PSIVIMTTAYLRIIIVFHFLKSALGTQQMPPSQLLAGIALFITFFIMAP----TWNRVND  117
            P +V+M TA+L++ +VF +L++ALG QQ+PP+  + G+AL +T+FIMAP       R+++
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  118  DALSPLMDNKISVEEAYNKGIEPIREFMFKNTREEDLELFVGLSNLPRPET-RNDV---P  173
            + LS   D     ++  ++++ P R+F+ +NT  E++ +F ++ +  +PE  R+ V   +
Sbjct  81   EELSN--DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDS  138

Query  174  TYVLIPAFVLSELRigfiigfflfipflMVDmiissilmsmgmmmmppmmislpFKILLF  233
              +L+PAF LS+L  +F IG++LF+PF+ +D+I+S+IL++MGMMM++PM +SLPFK+L+F
Sbjct  139  LLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVF  198

Query  234  ILVDGWNLIIGSLVRSF  250
            +LVDGW+L++G LV S+
Sbjct  199  VLVDGWSLVLGQLVGSY  215

820) fliP in NC_009049


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 76.0 bits (269),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 84/207 (41%), Positives = 137/207 (67%), Gaps = 7/207 (3%)

Query  38   QLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQQAPPNMLIVSLALFLTWYVMD  97
            QLIA++ +LS++P L +M T F  +  V+S+LR+A+G+QQ PPN+ I +LAL LT ++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  98   PVFTEAWTR-GIGPLTRNELDLPQALAAAA-VPFRGFMTGRIDPDTLAALQALRPGP---  152
            PV  +  +R     L+ +   L++ +   A VP+R+F+    D + ++ ++ +       
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  153  --AAPPSEAsfsvlvpsfllsEIQRAFEIGFLIYLPFLIIDlvvsavlmsmgmmmvppav  210
                +    S+ +L+P+F LS+++ AF IG+L++LPF+ IDL+VS +L++MGMMMV+P  
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  211  vsmpFKLAFFVVADGWSLISGALVRSY  237
            +S+PFKL  FV+ DGWSL+ G LV SY
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

821) fliP in NC_013854


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 75.5 bits (267),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 89/214 (42%), Positives = 151/214 (71%), Gaps = 20/214 (9%)

Query  63   QTIGLITVLSLAPSILIMMTAFTRIVIVLSFLRNALGVQQVPPTTVMMSLALFLTFFVMA  122
            Q I+L+ +LS+ P +++M TAF ++ +V+S+LRNALGVQQVPP   + +LAL LT+F+MA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  123  PVFERSYTQGIQP-LMNQEI-DEMEAF-----RRTVAPLRDFMLHHTAEKDLRLFMDM--  173
            PV       ++Q+ L N+E+ +++ A+     + ++ P RDF+ ++T   ++ +F D+  
Sbjct  69   PV-----GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  174  ----ARLQNVQEPNDMPLHVLVPAFMISEIKRGfeigfllflpfliiDmvvssilmsmgm  229
                 R ++   P+  +L +L+PAF +S+++ +F IG+LLFLPF+ ID++VS+IL++MGM
Sbjct  124  NKWPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGM  181

Query  230  mmlpptmvAIPFKIIFFVLVDGWYLIAGSLARSF  263
            MM++P  +++PFK++ FVLVDGW L+ G L  S+
Sbjct  182  MMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

822) fliP1 in NC_016622


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 75.2 bits (266),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 88/214 (42%), Positives = 149/214 (70%), Gaps = 20/214 (9%)

Query  63   QMVALITVLSLAPSILIMMTAFTRIVIVLSFLRNALGVQQVPPTTVMMSLALFLTFFVMA  122
            Q++AL+ +LS+ P +++M TAF ++ +V+S+LRNALGVQQVPP   + +LAL LT+F+MA
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  123  PVFERSYTQGIQP-LINQEI-DEMEAF-----RRTVAPLREFMLNHTSEKDLRLFMDM--  173
            PV       ++Q+ L N+E+ +++ A+     + ++ P R+F+  +T   ++ +F D+  
Sbjct  69   PV-----GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  174  ----ARIQSVPEPSDMPLHVLVPAFMISEIKRGfeigfllflpfliiDmvvssilmsmgm  229
                 R +    P   +L +L+PAF +S+++ +F IG+LLFLPF+ ID++VS+IL++MGM
Sbjct  124  NKWPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGM  181

Query  230  mmlpptmvAIPFKIIFFVLVDGWYLIAGSLARSF  263
            MM++P  +++PFK++ FVLVDGW L+ G L  S+
Sbjct  182  MMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

823) fliP in NC_009075


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 74.7 bits (264),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 90/220 (41%), Positives = 147/220 (67%), Gaps = 20/220 (9%)

Query  43   LRGDYSVKTQILLFMTLLGLLPALAIVMTSFLRFAIVlallrqalglqqglparVITGVA  102
            L + Y + +  LLFM  L++LP L ++ T+FL++++V++LLR+ALG+QQ  P   I G+A
Sbjct  4    LNSSYQLIA--LLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLA  59

Query  103  LLLTLLVMRPVGLDVW-RHAIEPYDRDEITFREAIARAE-QPVSRFMLAQTSKASLEQIS  160
            L+LT+++M PVGLDV  R   E    D  ++ + I +    P   F+     ++ +EQ++
Sbjct  60   LVLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFL---QRNTDIEQVT  116

Query  161  RLSGE---------RDVAKPEDHAFVVKAAAFMMSELKTAFQIGAMLFLPFLIIDLVVAS  211
             +++          RD  KP+  ++++  +AF +S+L+ AF+IG +LFLPF+ IDL+V++
Sbjct  117  FFNDIVQNKWPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  212  TLMAMGMMMlsplvislplklllfvlvDGWTLTVNTLTTS  251
             L+AMGMMM+SP+ +SLP+KLL+FVLVDGW+L +  L  S
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGS  214

824) fliP in NC_021877


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 74.7 bits (264),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 90/220 (41%), Positives = 147/220 (67%), Gaps = 20/220 (9%)

Query  43   LRGDYSVKTQILLFMTLLGLLPALAIVMTSFLRFAIVlallrqalglqqglparVITGVA  102
            L + Y + +  LLFM  L++LP L ++ T+FL++++V++LLR+ALG+QQ  P   I G+A
Sbjct  4    LNSSYQLIA--LLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLA  59

Query  103  LLLTLLVMRPVGLDVW-RHAIEPYDRDEITFREAIARAE-QPVSRFMLAQTSKASLEQIS  160
            L+LT+++M PVGLDV  R   E    D  ++ + I +    P   F+     ++ +EQ++
Sbjct  60   LVLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFL---QRNTDIEQVT  116

Query  161  RLSGE---------RDVAKPEDHAFVVKAAAFMMSELKTAFQIGAMLFLPFLIIDLVVAS  211
             +++          RD  KP+  ++++  +AF +S+L+ AF+IG +LFLPF+ IDL+V++
Sbjct  117  FFNDIVQNKWPERYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSN  174

Query  212  TLMAMGMMMlsplvislplklllfvlvDGWTLTVNTLTTS  251
             L+AMGMMM+SP+ +SLP+KLL+FVLVDGW+L +  L  S
Sbjct  175  ILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGS  214

825) fliP in NC_005085


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 74.4 bits (263),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 88/210 (42%), Positives = 147/210 (70%), Gaps = 14/210 (6%)

Query  45   QILILMTALGLLPVLVLMMTSFTRFVIVlsllrqalglqqglPNRLITGVALILTLLVMR  104
            Q++ L+  L++LP+LV+M T+F ++ +V+SLLR+ALG+QQ  PN  I G+AL+LT+++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  105  PVGLQVWNEAMVPFDQDKITMQ---QALEIAAKPVSRFMLAQTGKTALAQVARLSGEENV  161
            PVGL+V       ++++ ++ +    A +I  +++  +      +T + QV+ +++  + 
Sbjct  69   PVGLDV----QARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQN  124

Query  162  ARPEDHAFTVK-------LAAFVLSELKTAFQIGCMLFIPFLVIDLVVSSVLMAMGMMMl  214
             +PE    +VK       ++AF LS+L+ AF+IG +LF+PF+ IDL+VS++L+AMGMMM+
Sbjct  125  KWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMV  184

Query  215  splvislplklllfvlvDGWSLTVNTLVTS  244
            SP+ +SLP+KLL+FVLVDGWSL +  LV S
Sbjct  185  SPMTLSLPFKLLVFVLVDGWSLVLGQLVGS  214

826) Q7C_1257 in NC_017856


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 73.6 bits (260),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 88/210 (42%), Positives = 145/210 (70%), Gaps = 12/210 (5%)

Query  43   QILALMTVLTLLPAGLMMMTSFTRIIIVMAILRQALGVQSTPSNQVLLGLALFLTIFIMH  102
            Q++AL+ +L++LP  ++M T+F ++ +V ++LR+ALGVQ  P+N  + GLAL LTIFIM 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  103  PVFGSAYENGVKP---YMDGGMQPTEAITAASAPFRDFMLAQTRETDIALFAEI------  153
            PV G   +  ++      D G  + +    A  P+RDF+  +T   ++++F +I      
Sbjct  69   PV-GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWP  127

Query  154  GGYAPLQSAEDVPFSLLLPAFVTSELKTAFQigflifipfliidlvvasvlmamgmmmls  213
              Y   +S    ++ +L+PAF  S+L+ AF+IG+L+F+PF+ IDL+V+++L+AMGMMM+S
Sbjct  128  ERYR--DSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVS  185

Query  214  pmlislpFKLMLFVLIDGWALLMGTLASSF  243
            PM +SLPFKL++FVL+DGW+L++G L +S+
Sbjct  186  PMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

827) fliP in NC_006369


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 73.4 bits (259),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 85/212 (41%), Positives = 151/212 (72%), Gaps = 11/212 (5%)

Query  43   SINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTY  102
            S +L  L+FM  L+VLP L++  T+F ++ +V+S+LR+A+G+ Q P N  + G+AL +T 
Sbjct  7    SYQLIALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  103  FVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPL---RQFMLNQTRKNDLSLFEKFAH  159
            F+M+PV   ++    +  +++ I+ +LA    Q++L   R+F+  +T  +++++F+ + +
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIG-ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  160  NV-----PKTLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlvvssllmamgmmm  214
            N        ++   ++ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  215  lsplIISLPFKIMLFVMVDGWTLVLGSLASSF  246
            +SP+ +SLPFK+++FV+VDGW+LVLG L +S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

828) fliP in NC_018139


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 73.4 bits (259),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 85/212 (41%), Positives = 151/212 (72%), Gaps = 11/212 (5%)

Query  43   SINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTY  102
            S +L  L+FM  L+VLP L++  T+F ++ +V+S+LR+A+G+ Q P N  + G+AL +T 
Sbjct  7    SYQLIALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  103  FVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPL---RQFMLNQTRKNDLSLFEKFAH  159
            F+M+PV   ++    +  +++ I+ +LA    Q++L   R+F+  +T  +++++F+ + +
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIG-ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  160  NV-----PKTLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlvvssllmamgmmm  214
            N        ++   ++ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  215  lsplIISLPFKIMLFVMVDGWTLVLGSLASSF  246
            +SP+ +SLPFK+++FV+VDGW+LVLG L +S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

829) fliP in NC_018140


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 72.9 bits (257),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 85/212 (41%), Positives = 151/212 (72%), Gaps = 11/212 (5%)

Query  43   SINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTY  102
            S +L  L+FM  L+VLP L++  T+F ++ +V+S+LR+A+G+ Q P N  + G+AL +T 
Sbjct  7    SYQLIALLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTI  64

Query  103  FVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPL---RQFMLNQTRKNDLSLF-----  154
            F+M+PV   ++    +  +++ I+ +LA    Q++L   R+F+  +T  +++++F     
Sbjct  65   FIMAPVGLDVQARLQNEELSNDIG-ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  155  EKFANNVPKTLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlvvssllmamgmmm  214
            +K ++    ++   ++ +L+PAF  S+L+ AF+IG++LFLPF+ IDL+VS++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  215  lsplIISLPFKIMLFVMVDGWTLVLGSLASSF  246
            +SP+ +SLPFK+++FV+VDGW+LVLG L +S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

830) fliP1 in NC_007493


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 72.3 bits (255),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 84/207 (41%), Positives = 137/207 (67%), Gaps = 7/207 (3%)

Query  38   QLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQQAPPNMLIVSLALFLTWYVMD  97
            QLIA++ +LS++P L +M T F  +  V+S+LR+A+G+QQ PPN+ I +LAL LT ++M 
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  98   PVFTEAWTR-GIGPLTRNELDLPQALAAAA-VPFRGFMTGRIDPDTLAALQALRPGP---  152
            PV  +  +R     L+ +   L++ +   A VP+R+F+    D + ++ ++ +       
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  153  --AAppsevsfsvlvpsfllseIQRAFEIGFLIYLPFLIIDlvvsavlmsmgmmmvppav  210
                +    S+ +L+P+F LS+++ AF IG+L++LPF+ IDL+VS +L++MGMMMV+P  
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  211  vsmpFKLAFFVVADGWSLISGALVRSY  237
            +S+PFKL  FV+ DGWSL+ G LV SY
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

831) fliP in NC_000915


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 71.8 bits (253),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 63/156 (41%), Positives = 110/156 (71%), Gaps = 6/156 (3%)

Query  1    MILTFFIMEP-SLKKAYDTGIKPYMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFF  58
            ++LT+FIM P +L            +   + ++ ++++AL P+++F+ +NT   ++++F 
Sbjct  60   LVLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFN  119

Query  59   RIRNLPNPKT-PDEV---SLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmam  114
             I +   P    D V   SL +L+PAF +S+L+ AF+IG+LL+LPF+ ID+++S+IL+AM
Sbjct  120  DIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAM  179

Query  115  gmmmlppvmisLPFKILVFILVDGFNLLTENLVASF  150
            GMMM++P+ +SLPFK+LVF+LVDG +L+  +LV+S+
Sbjct  180  GMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

832) Psefu_3045 in NC_015556


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 71.8 bits (253),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 78/191 (41%), Positives = 130/191 (69%), Gaps = 14/191 (7%)

Query  66   TCFTRFIIVLAILRQAIGLQQSPPNNVLIGIALCLTLLVMRPAWQELYENAYQPFETDQL  125
            T F ++ +V+++LR+A+G+QQ PPN  + G+AL LT+++M P    L  +    ++ ++L
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV--GL--DVQARLQNEEL  83

Query  126  T-----LPEALDSAKGVMAR-FMLAQTNKNSLVTMVELAGETMPE---DPTTLDFSLIL-  175
            +     L++ +D    V  R F+  +T+ + +    ++  +  PE   D+   D  LIL 
Sbjct  84   SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILM  143

Query  176  PAFVLSELKTAFQLGFMIFIPFLVIDlvvasvlmamgmmmlspmmislpFKLMVFVLVDG  235
            PAF LS+L+ AF++G+++F+PF+ IDL+V+++L+AMGMMM+SPM +SLPFKL+VFVLVDG
Sbjct  144  PAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDG  203

Query  236  WTLMMGTLATS  246
            W+L++G L  S
Sbjct  204  WSLVLGQLVGS  214

833) fliP in NC_013422


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 71.8 bits (253),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 78/194 (41%), Positives = 135/194 (70%), Gaps = 18/194 (9%)

Query  85   TSFTRIIIVLSLMRQALGLTQTPSNQILIGLALFLTLFIMAPVFQKSYDEGIKPYMDQKI  144
            T+F ++ +V+SL+R+ALG+ Q P+N  + GLAL LT+FIMAPV   + D   +   ++ +
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV---GLDVQAR-LQNEEL  83

Query  145  TANVAI------EKAAEPLRTFMLNQTRQSDIALFQNI------GHYPAFETPKDVPYTV  192
            + +++       ++A  P R F+  +T   ++++F++I       +Y   ++ K  +  +
Sbjct  84   SNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYR--DSVKPDSLLI  141

Query  193  LMAAFITSELKTAFEigflifipfliidlvvasvlmsmgmmmlspmivsLPFKLMLFVLV  252
            LM+AF  S+L+ AF IG+L+F+PF+ IDL+V+++L++MGMMM+SPM +SLPFKL++FVLV
Sbjct  142  LMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLV  201

Query  253  DGWTLIMGTLASSF  266
            DGW+L++G L +S+
Sbjct  202  DGWSLVLGQLVGSY  215

834) fliP in NC_012440


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 71.5 bits (252),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 136/195 (70%), Gaps = 7/195 (3%)

Query  34   PSILITVTAFVRIVIVLSLLRHALGIPQSPPNQVIIAFSLFLTFFVMKPVFDDINGNAIQ  93
            P +++  TAF+++ +V+SLLR+ALG+ Q PPN  I +++L LT+F+M PV  D+++   +
Sbjct  21   PLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN  80

Query  94   PYLKKEIGDM--EAIERAKEPVKKFMLKNTRKEDLKLFLDIAGEK--PKSPDEV---SMV  146
              L ++IG +  +  + A  P + F+ +NT  E++ +F DI  +K   +  D V   S++
Sbjct  81   EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL  140

Query  147  SLIPAFMISEIKTAfeivfiiflpfliiDMLVAsilmsmgmmmippmlislpFKLILFVL  206
             L+PAF +S+++ AF I +++FLPF+ ID++V++IL++MGMMM++PM +SLPFKL++FVL
Sbjct  141  ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVL  200

Query  207  ADGFELLTKALIQSY  221
             DG  L+   L+ SY
Sbjct  201  VDGWSLVLGQLVGSY  215

835) Dsui_1746 in NC_016616


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 71.3 bits (251),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 145/202 (72%), Gaps = 12/202 (5%)

Query  56   LTFIPAVLLMMTAFTRIIIVLSMLRHAMGLQTTPPNQVLLGLALFLTFFVMSPVA----D  111
            L+ +P +++M TAF ++ +V+S+LR+A+G+Q  PPN  + GLAL LT+F+M+PV+     
Sbjct  17   LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQA  76

Query  112  RVYTEAYVPLAENKITFLQALEKAE-QPVRGFMLKQTREADIALFAGFAGIKNIES-PDK  169
            R+  E    L+++  ++ + +++    P R+F+ ++T   ++++F ++   K  E   D 
Sbjct  77   RLQNEE---LSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDS  133

Query  170  V---PLRILVPAFVTSELKTAfqigfiifipfliiDmvvgsvlmsmgmmmmspvmvampF  226
            V   +L IL+PAF  S+L+ AF+IG+++F+PF+ ID++V+++L++MGMMM+SP+ +++PF
Sbjct  134  VKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF  193

Query  227  KMMLFVLVDGWHLVLGSLVQSF  248
            K+++FVLVDGW LVLG LV S+
Sbjct  194  KLLVFVLVDGWSLVLGQLVGSY  215

836) fliP in NC_012115


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 70.5 bits (248),  Expect = 7e-14, Method: Compositional matrix adjust.
 Identities = 83/188 (45%), Positives = 133/188 (71%), Gaps = 6/188 (3%)

Query  60   TSFVRLLVVFGFLRQALGTPQsppttllvslalvlTFFIMEPYAKQAYNTGIKPYMEEKI  119
            T+F++L VVF++LR+ALG  Q PP   + +LALVLT+FIM P + +      +  + + I
Sbjct  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87

Query  120  GY--DQAFNNAVKPFKKFMIKNTREKDLALFFRIRHLPNP----KTIDDVPLTILVPAFM  173
            G   +Q  +NA+ P++ F+ +NT   ++++F  I +   P     ++   +L IL+PAF 
Sbjct  88   GALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFT  147

Query  174  LSELKTAFEIGfliflpfliiDmvvssilmslgmmmlppvmISLPFKILVFVLVDGWNLI  233
            LS+L+ AF IG+L+FLPF+ ID++VS+IL+++GMMM++P+ +SLPFK+LVFVLVDGW+L+
Sbjct  148  LSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLV  207

Query  234  VMGLVQSF  241
            +  LV S+
Sbjct  208  LGQLVGSY  215

837) Calni_1332 in NC_014758


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 70.5 bits (248),  Expect = 8e-14, Method: Compositional matrix adjust.
 Identities = 87/208 (42%), Positives = 145/208 (70%), Gaps = 6/208 (2%)

Query  43   QIIFLITILSIAPAILIMMTSFTRIIIVFSFLRSAMGTQQTPPNQVLIGLALFLTFFIMS  102
            Q+I L+ +LS+ P +++M T+F ++ +VFS+LR+A+G QQ PPN  + GLAL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  103  PVFSEMNKNALAPYLDGKI-AFTDALKEAK-KPLRKFMLENTRKKDIMTFLQVSKSPMP-  159
            PV  +++       L   I A+++ + +    P R F+  NT   ++  F ++ ++  P 
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  160  ---KTVDDIPDMVLLPAFVTSELQTAfeigfllflpfliidfvvssvllsmgmmmlppvm  216
                +V   + ++L+PAF  S+L+ AF IG+LLFLPF+ ID++VS++LL+MGMMM++P+ 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  217  ismpFKILLFVLVDGWNLIVMSLVKSFM  244
            +S+PFK+L+FVLVDGW+L++  LV S++
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSYL  216

838) fliP in NC_007484


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 68.9 bits (242),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 89/210 (43%), Positives = 151/210 (72%), Gaps = 12/210 (5%)

Query  58   QILGLMTVLTLLPAAVMVMTSFTRIIVVFSILRQALGLAQTPSSQILIGLALFLTFFIMS  117
            Q+++L+ +L++LP  V++ T+F ++ VVFS+LR+ALG+ Q P++  + GLAL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  118  PVLDKAYQEGVKPYFQEEISVTDALARVRE-----PFHHFMIAQTRETDLKLFAEISGR-  171
            PV +   Q  ++   +E  +  +ALA+  +     P+++F+  +T   ++ +F +I    
Sbjct  69   PV-GLDVQARLQN--EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNK  125

Query  172  --EAF-ESPEQVPFSLLVPAFITSELKTAfqigfllfipfliidlvvasvlmamgmmmls  228
              E + +S    ++ +L+PAF  S+L+ AF+IG+LLF+PF+ IDL+V+++L+AMGMMM+S
Sbjct  126  WPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVS  185

Query  229  pmlvslpFKLLLFVLIDGWSLLMGTLASSF  258
            PM +SLPFKLL+FVL+DGWSL++G L +S+
Sbjct  186  PMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

839) Nwat_0923 in NC_014315


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 68.7 bits (241),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 87/207 (43%), Positives = 149/207 (72%), Gaps = 6/207 (2%)

Query  58   QILGLMTVLTLLPAAVMVMTSFTRIIVVFSILRQALGLAQTPSSQILIGLALFLTFFIMS  117
            Q+++L+ +L++LP  V++ T+F ++ VVFS+LR+ALG+ Q P++  + GLAL LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  118  PV-LDKAYQEGVKPYFQEEISVADALARVR-EPFHHFMIAQTRETDLKLFAEISGR---E  172
            PV LD   +       ++  ++A+ + +    P+++F+  +T   ++ +F +I      E
Sbjct  69   PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  173  AF-ESPEQVPFSLLVPAFITSELKTAfqigfllfipfliidlvvasvlmamgmmmlspml  231
             + +S    ++ +L+PAF  S+L+ AF+IG+LLF+PF+ IDL+V+++L+AMGMMM+SPM 
Sbjct  129  RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT  188

Query  232  vslpFKLLLFVLIDGWSLLMGTLASSF  258
            +SLPFKLL+FVL+DGWSL++G L +S+
Sbjct  189  LSLPFKLLVFVLVDGWSLVLGQLVGSY  215

840) ECBG_01258 in NC_020995


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 67.1 bits (235),  Expect = 9e-13, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 133/191 (70%), Gaps = 5/191 (2%)

Query  68   IMMTSFTRIIMVLSFVRSSLGTQQNPPNQVLIGLALFLTFFIMKPVYTDVYQQ-AIEPFD  126
            +M T+F ++ +V+S++R++LG QQ PPN  + GLAL LT+FIM PV  DV  +   E + 
Sbjct  25   VMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELS  84

Query  127  RQEISQAEAFDRSE-KRIKAFMMVQTREKDIALFAEADGE--TEKYHSS-DDVPLTVMVP  182
             +  + A+ +D++     + F+  +T   ++++F +   +   E+Y+ S    +L +++P
Sbjct  85   NDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMP  144

Query  183  AFIISELRTAFSigflifipfliidlVVssilmsmgmmmlspimislpFKILLFVLVDGW  242
            AF +S+L  AF IG+L+F+PF+ IDL+VS+IL++MGMMM+SP+ +SLPFK+L+FVLVDGW
Sbjct  145  AFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204

Query  243  YLIVESLIKSF  253
             L++  L+ S+
Sbjct  205  SLVLGQLVGSY  215

841) fliP in NC_007650


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 62.4 bits (217),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 86/208 (42%), Positives = 143/208 (69%), Gaps = 16/208 (7%)

Query  54   LLFMTLLGLLPALAIVMTSFLRFAIVlallrqalglqqglparVItavallltllvMRPV  113
            LLFM  L++LP L ++ T+FL++++V++LLR+ALG+QQ  P   I ++AL+LT+++M PV
Sbjct  13   LLFM--LSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPV  70

Query  114  GLDVW-RHAIEPYDRDEITFREAIARAEKPLSRFMLAQTSKASLEQISRLSGE-------  165
            GLDV  R   E    D  ++ + I   +++L  +      ++ +EQ++ +++        
Sbjct  71   GLDVQARLQNEELSNDIGALAHQID--QNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE  128

Query  166  --RDVAKPEDHAFVVKAAAFMMSELKTAFQIGAMLFLPFLIIDLVVASTLMAMGMMMlsp  223
              RD  KP+  ++++  +AF +S+L+ AF+IG +LFLPF+ IDL+V++ L+AMGMMM+SP
Sbjct  129  RYRDSVKPD--SLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSP  186

Query  224  lvislplklllfvlvDGWTLTVNTLTTS  251
            + +SLP+KLL+FVLVDGW+L +  L  S
Sbjct  187  MTLSLPFKLLVFVLVDGWSLVLGQLVGS  214

842) R2APBS1_2987 in NC_020541


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 59.2 bits (205),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 131/190 (69%), Gaps = 12/190 (6%)

Query  67   SFTRIIIVLGFLRQALGTQSTPPNQVllglalfltlFVMSPV----LNKSYADGVKPYMD  122
            +F ++ +V+++LR+ALG Q  PPN  + GLAL LT+F+M+PV      +   + +    D
Sbjct  29   AFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN--D  86

Query  123  GqlaaeqalpaasapFKQFMLDQTREADLALFTRLAGEK---PY--AAKADVPFKVAMPA  177
                A+Q    A  P+++F+  +T   ++++F  +  +K    Y  + K+D ++ + MPA
Sbjct  87   IGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPD-SLLILMPA  145

Query  178  FLTSELKTAFQMGfllfipfliiDLvvasvlmsmgmmmvspmiisLPFKIMLFVLVDGWT  237
            F  S+L+ AF++G+LLF+PF+ IDL+V+++L++MGMMMVSPM +SLPFK+++FVLVDGW+
Sbjct  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205

Query  238  LLLGTLAGSF  247
            L+LG L GS+
Sbjct  206  LVLGQLVGSY  215

843) fliP in NC_009428


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 58.9 bits (204),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 89/214 (42%), Positives = 141/214 (66%), Gaps = 7/214 (3%)

Query  29   SLTTRSVQLIVLITLLSLVPALGMMITCFPFIVTVLSILRQAIGLQQAPPNMLIVSLALF  88
             L   S QLI L+ +LS++P L +M T F  +  V+S+LR+A+G+QQ PPN+ I +LAL 
Sbjct  2    ELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALV  61

Query  89   LTWYIMDPVFTEAWTR-GIEPLTRNEIDIQQALVLAS-APFRGFMAARLDLE--TF--ST  142
            LT +IM PV  +  +R   E L+ +   + + +   +  P+R+F+    D+E  TF    
Sbjct  62   LTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDI  121

Query  143  LQALRPGEISPPLEA-PFSVLVPSFLLSEIQRAfeigfliflpfliidlvvaavlmsmgm  201
            +Q  +P     ++ + ++ +L+P+F LS+++ AF IG+L+FLPF+ IDL+V+ +L++MGM
Sbjct  122  VQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGM  181

Query  202  mmvppavvsmpFKLAFFVVGDGWSLISGALVRSY  235
            MMV+P  +S+PFKL  FV+ DGWSL+ G LV SY
Sbjct  182  MMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215

844) Thivi_0368 in NC_018012


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 57.9 bits (200),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 75/187 (41%), Positives = 134/187 (72%), Gaps = 6/187 (3%)

Query  63   SFTRIIIVLGILRQGLGTSQTPSNQIllglalfltlFVMAPVFQEIYDTAAIPYMEEKLG  122
            +F ++ +V+++LR++LG  Q P+N  + GLAL LT+F+MAPV  ++        + + +G
Sbjct  29   AFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIG  88

Query  123  T--EEALGKAIKPLRTFMLAQTRETDLSLFAEI---RGLDGF-DSPDAIPLNLLVPAFVI  176
            +  ++   +A+ P R F+  +T   ++++F +I   +  + + DS  + +L +L+PAF +
Sbjct  89   ALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTL  148

Query  177  SELKTAfqigflilipfliiDlvvasvlmsmgmmmlspmIISLPFKIMLFVLVDGWSLVM  236
            S+L+ AF+IG+L+++PF+ IDL+V+++L++MGMMM+SPM +SLPFK+++FVLVDGWSLV+
Sbjct  149  SQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVL  208

Query  237  GTLAQSF  243
            G L  S+
Sbjct  209  GQLVGSY  215

845) Nhal_3616 in NC_013960


> NC_003143_P1|18|G18|218927477|YP_002345352.1|Yersinia_pestis_CO92|+|15626..16276|-|YPO0270|type 
III secretion system protein
Length=216

 Score = 54.7 bits (188),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 90/212 (43%), Positives = 151/212 (72%), Gaps = 16/212 (7%)

Query  65   QILGLMTALTLLPAAVMMMTSFTRIIVVLSILRQALGLAQTPSSQiligltlfltffiMG  124
            Q+++L+  L++LP  V+M T+F ++ VV+S+LR+ALG+ Q P++  + GL+L LT+FIM+
Sbjct  9    QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA  68

Query  125  PVLDKAYQEGVRPYLQEEISVTE--ALVRTRE-----PFRHFMMAQTRETDLQLFAEIAG  177
            PV       +V++ LQ+E    +  AL +  +     P+R+F+  +T   ++ +F +I  
Sbjct  69   PV-----GLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQ  123

Query  178  QK---AF-ESPAQVPFSLLVPAFITSELKTAfqigfllfipfliidlvvasvlmamgmmm  233
            +K    + +S    ++ +L+PAF  S+L+ AF+IG+LLF+PF+ IDL+V+++L+AMGMMM
Sbjct  124  NKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMM  183

Query  234  lspmlvslpFKLLLFVLIDGWSLLMGTLASSF  265
            +SPM +SLPFKLL+FVL+DGWSL++G L +S+
Sbjct  184  VSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215