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Homologs of S15 gene of AY275838

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ECO111_1282
( YP_003233773.1 )

putative UvrD/REP helicase-like protein

NC_013364
(Escherichia coli 11128)

0.0

2) UMNK88_1258
( YP_006133037.1 )

ATP-binding protein

NC_017641
(Escherichia coli UMNK88)

0.0

3) ECO26_1334
( YP_003228378.1 )

UvrD/REP helicase

NC_013361
(Escherichia coli 11368)

0.0

4) ETAE_2487
( YP_003296533.1 )

superfamily I DNA and RNA helicase

NC_013508
(Edwardsiella tarda EIB202)

0.0

5) O3M_15650
( YP_006770760.1 )

UvrD/REP helicase-like protein

NC_018650
(Escherichia coli 2009EL-2050)

0.0

6) O3O_09630
( YP_006784949.1 )

UvrD/REP helicase-like protein

NC_018661
(Escherichia coli 2009EL-2071)

0.0

7) O3K_15665
( YP_006779809.1 )

putative UvrD/REP helicase-like protein

NC_018658
(Escherichia coli 2011C-3493)

0.0

8) ETAF_2235
( YP_005699830.1 )

hypothetical protein

NC_017309
(Edwardsiella tarda FL6-60)

0.0

9) Z1202
( NP_286737.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

0.0

10) Z1642
( NP_287145.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

0.0

11) ECs1384
( NP_309411.1 )

hypothetical protein

NC_002695
(Escherichia coli Sakai)

0.0

12) CDCO157_1323
( YP_006312194.1 )

hypothetical protein

NC_017906
(Escherichia coli Xuzhou21)

0.0

13) CJA_1550
( YP_001982032.1 )

hypothetical protein

NC_010995
(Cellvibrio japonicus Ueda107)

0.0

14) AHA_1063
( YP_855605.1 )

hypothetical protein

NC_008570
(Aeromonas hydrophila ATCC 7966)

0.0

15) Pmen_1133
( YP_001186632.1 )

superfamily I DNA/RNA helicase

NC_009439
(Pseudomonas mendocina ymp)

0.0

16) PSPPH_1335
( YP_273593.1 )

ATP-binding protein

NC_005773
(Pseudomonas syringae 1448A)

0.0

17) mma_2031
( YP_001353721.1 )

hypothetical protein

NC_009659
(Janthinobacterium sp. Marseille)

0.0

18) K734_08115
( YP_008035120.1 )

superfamily I DNA/RNA helicase

NC_021286
(Idiomarina loihiensis GSL 199)

0.0

19) IL1613
( YP_155998.1 )

superfamily I DNA/RNA helicase

NC_006512
(Idiomarina loihiensis L2TR)

0.0

20) EHR_01785
( YP_006486234.1 )

hypothetical protein

NC_018081
(Enterococcus hirae ATCC 9790)

0.0

21) Csal_0774
( YP_572830.1 )

ATP-binding protein

NC_007963
(Chromohalobacter salexigens DSM 3043)

0.0

22) PSPTO_1455
( NP_791281.1 )

hypothetical protein

NC_004578
(Pseudomonas syringae DC3000)

0.0

• Sequence Alignments

1) ECO111_1282 in NC_013364


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score = 1395 bits (5296),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 877/893 (99%), Positives = 886/893 (99%), Gaps = 0/893 (0%)

Query  1    MVTICVDGENKTHKITDWTLWAGNDDREVMLTCHFRSGRKYTRPLSVCQITPTVNLRNVF  60
            MVTICVDGENKTHKITDWTLWAGNDD EVMLTCHFRSG+KYTRPLSVCQITPTVNLRNVF
Sbjct  1    MVTICVDGENKTHKITDWTLWAGNDDGEVMLTCHFRSGKKYTRPLSVCQITPTVNLRNVF  60

Query  61   LERKGNAVTSRAELVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR  120
            LERKG+AVTSRAE VIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR
Sbjct  61   LERKGDAVTSRAERVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR  120

Query  121  VANERIFYARGNNRNIDENILRQIKKIVPHPDTALHAYCSGQSKKRDSPWGLIFPFGLNE  180
            VANERIFYARGNNRNIDENILRQIKKIVPHPD+ALHAYCSGQSKKRDSPWGLIFPFGLNE
Sbjct  121  VANERIFYARGNNRNIDENILRQIKKIVPHPDAALHAYCSGQSKKRDSPWGLIFPFGLNE  180

Query  181  SQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKM  240
            SQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKM
Sbjct  181  SQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKM  240

Query  241  DKQQLGYVMARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVA  300
            DKQQLGYV+ARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVA
Sbjct  241  DKQQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVA  300

Query  301  SLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRN  360
            SLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRN
Sbjct  301  SLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRN  360

Query  361  RIDLLLNFMILKVKPLMIPERRLALFTSLQLSYYEKNIREKQISLNEYEEAFKKSDFKIL  420
            RIDLLLNF ILKVKPLMIPERRLALFTSLQLSYYEK IREKQISLNEYE  +KKSDFKIL
Sbjct  361  RIDLLLNFRILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFKIL  420

Query  421  LGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDRFIKRFPIIGSSTHSIINSIGKGA  480
            LGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFD+FIKRFP+IGSSTHSIINSIGKGA
Sbjct  421  LGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGKGA  480

Query  481  LLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQlphvpvllpnspsppAEYYNCEKY  540
            LLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLP+SP+PPAEYYNCEKY
Sbjct  481  LLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCEKY  540

Query  541  SLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKQFYDNALIPLTVDSGEASLSLVITA  600
            SLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNK FYDNALIPLTVDSGEASLSLVITA
Sbjct  541  SLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLVITA  600

Query  601  KGNHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGR  660
            KGNHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGR
Sbjct  601  KGNHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGR  660

Query  661  ECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIA  720
            ECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIA
Sbjct  661  ECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIA  720

Query  721  ALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLR  780
            ALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLR
Sbjct  721  ALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLR  780

Query  781  DILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVI  840
            DILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVI
Sbjct  781  DILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVI  840

Query  841  EVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG  893
            EVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG
Sbjct  841  EVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG  893

2) UMNK88_1258 in NC_017641


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score = 1392 bits (5282),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 875/893 (98%), Positives = 886/893 (99%), Gaps = 0/893 (0%)

Query  1    MVTICVDGENKTHKITDWTLWAGNDDREVMLTCHFRSGRKYTRPLSVCQITPTVNLRNVF  60
            MVTICVDGENKTHKITDWTLWAGNDD EVMLTCHFRSG+KYTRPLSVCQITPTVNLRNVF
Sbjct  1    MVTICVDGENKTHKITDWTLWAGNDDGEVMLTCHFRSGKKYTRPLSVCQITPTVNLRNVF  60

Query  61   LERKGNAVTSRAELVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR  120
            LERKG+AVTSRAE VIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR
Sbjct  61   LERKGDAVTSRAERVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR  120

Query  121  VANERIFYARGNNRNIDENILRQIKKIVPHPDTALHAYCSGQSKKRDSPWGLIFPFGLNE  180
            VANERIFYARGNNRNIDENILRQIKKIVPHPD+ALHAYCSGQSKKRDSPWGLIFPFGLNE
Sbjct  121  VANERIFYARGNNRNIDENILRQIKKIVPHPDAALHAYCSGQSKKRDSPWGLIFPFGLNE  180

Query  181  SQLLAVERAFSSQISVIEGPPGTGKAQTILNIVANILIQNKTVAILSNNNSAVSNVYEKM  240
            SQLLAVERAFSSQISVIEGPPGTGK+QTILNIVANILIQNKTVAILSNNNSAVSNVYEKM
Sbjct  181  SQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKM  240

Query  241  DKQQLGYVMARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVA  300
            DKQQLGYV+ARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVA
Sbjct  241  DKQQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVA  300

Query  301  SLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRN  360
            SLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRN
Sbjct  301  SLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRN  360

Query  361  RIDLLLNFMILKVKPLMIPERRLALFTSLQFSYYEKNIREKQISLNEYEEVFKKSDFKIL  420
            RIDLLLNF ILKVKPLMIPERRLALFTSLQ+SYYEK IREKQISLNEYE V+KKSDFKIL
Sbjct  361  RIDLLLNFRILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFKIL  420

Query  421  LGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDRFIKRFPIIGSSTHSIINSIGKGA  480
            LGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFD+FIKRFP+IGSSTHSIINSIGKGA
Sbjct  421  LGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGKGA  480

Query  481  LLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQlphvpvllpnspsppAEYYNCEKY  540
            LLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLP+SP+PPAEYYNCEKY
Sbjct  481  LLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCEKY  540

Query  541  SLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKQFYDNALIPLTVDSGEASLSLVITA  600
            SLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNK FYDNALIPLTVDSGEASLSLVITA
Sbjct  541  SLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLVITA  600

Query  601  KGNHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGR  660
            KGNHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGR
Sbjct  601  KGNHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGR  660

Query  661  ECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIA  720
            ECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIA
Sbjct  661  ECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIA  720

Query  721  ALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLR  780
            ALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLR
Sbjct  721  ALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLR  780

Query  781  DILSQDSYRSMMFHSQIALNQLVSLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVI  840
            DILSQDSYRSMMFHSQIALNQLV LERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVI
Sbjct  781  DILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVI  840

Query  841  EVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG  893
            EVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG
Sbjct  841  EVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG  893

3) ECO26_1334 in NC_013361


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score = 1384 bits (5251),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 868/893 (98%), Positives = 885/893 (99%), Gaps = 0/893 (0%)

Query  1    MVTICVDGENKTHKITDWTLWAGNDDREVMLTCHFRSGRKYTRPLSVCQITPTVNLRNVF  60
            MVTICVDGENKTHKITDWTLWAGNDD EVMLTCHFRSG+KYTRPLSVCQITPTVNLRNVF
Sbjct  1    MVTICVDGENKTHKITDWTLWAGNDDGEVMLTCHFRSGKKYTRPLSVCQITPTVNLRNVF  60

Query  61   LERKGNAVTSRAELVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR  120
            LERKG+AVTSRAE VIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR
Sbjct  61   LERKGDAVTSRAERVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR  120

Query  121  VANERIFYARGNNRNIDENILRQIKKIVPHPDTALHAYCSGQSKKRDSPWGLIFPFGLNE  180
            VANERIFYARGNNRNIDENILRQIKKIVPHPD+ALHAYCSGQSKKRDSPWGLIFPFGLNE
Sbjct  121  VANERIFYARGNNRNIDENILRQIKKIVPHPDAALHAYCSGQSKKRDSPWGLIFPFGLNE  180

Query  181  SQLLAVERAFSSQVSVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKM  240
            SQLLAVERAFSSQ+SVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKM
Sbjct  181  SQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKM  240

Query  241  DKQQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVA  300
            DKQQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVA
Sbjct  241  DKQQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVA  300

Query  301  SLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRLSSRKTTDLMAYIHYLSDRRIGFRN  360
            SLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYR+SS+KTTDLMAYIHYLSDRRIGFRN
Sbjct  301  SLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRN  360

Query  361  RIDLLLNFRILKVKPLVIPERRLALFTSLQLSYYEKFIREKQVSLNEYEEVLKESDFKIL  420
            RIDLLLNFRILKVKPL+IPERRLALFTSLQLSYYEK IREKQ+SLNEYE VLK SDFKIL
Sbjct  361  RIDLLLNFRILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFKIL  420

Query  421  LERLTSWSVLYLKQHLRRNISTRNSFSAETYRDEFNRFIKRFPVIGSSTHSIINSIGKGA  480
            L RLTSWS+LYLKQHLRRN+STR+SFSAETYRDEF++FIKRFPVIGSSTHSIINSIGKGA
Sbjct  421  LGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGKGA  480

Query  481  LLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQlphvpvllpnspsppAEYYNCEKY  540
            LLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLP+SP+PPAEYYNCEKY
Sbjct  481  LLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCEKY  540

Query  541  SLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKQFYDNALIPLTLDSGEASLSLIITA  600
            SLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNK FYDNALIPLT+DSGEASLSL+ITA
Sbjct  541  SLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLVITA  600

Query  601  KGNHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAETVLPADFVKSTVHKFQGR  660
            KGNHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAE VLPADFVKSTVHKFQGR
Sbjct  601  KGNHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGR  660

Query  661  ECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIA  720
            ECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIA
Sbjct  661  ECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIA  720

Query  721  ALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLR  780
            ALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLR
Sbjct  721  ALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLR  780

Query  781  DILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVI  840
            DILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVI
Sbjct  781  DILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVI  840

Query  841  EVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG  893
            EVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG
Sbjct  841  EVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG  893

4) ETAE_2487 in NC_013508


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score = 1151 bits (4365),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 703/891 (79%), Positives = 804/891 (91%), Gaps = 2/891 (0%)

Query  5    MVTICVDGENKTNKISDWTLWSGYGNGDVMLTCHFRSGKKYTRPLSVCQITPTSTLHNVF  64
            MVTICVDGENKT+KI+DWTLW+G ++G+VMLTCHFRSGKKYTRPLSVCQITPT  L+NVF
Sbjct  1    MVTICVDGENKTHKITDWTLWAGNDDGEVMLTCHFRSGKKYTRPLSVCQITPTVNLRNVF  60

Query  65   LERKGFAVTSRAERVILYGNKYAVVYYSGNDKPYIMKTAGLNFQACSNFTEHAVFDYFCR  124
            LERKG AVTSRAERVI+YG+KYA VYY   ++PYIMKT+GL+FQ CS FTEHAVF+Y+CR
Sbjct  61   LERKGDAVTSRAERVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR  120

Query  125  IAEERISDARGNDRSIAENVLRQIKRIVPHPDTALHAYCSGQNKKRDFSGNLIFPFGLNE  184
            +A+ERI  ARGN+R+I EN+LRQIK+IVPHPD+ALHAYCSGQ+KKRD +  LIFPFGLNE
Sbjct  121  VANERIFYARGNNRNIDENILRQIKKIVPHPDAALHAYCSGQSKKRDSPWGLIFPFGLNE  180

Query  185  SQLLAVERAFSSQISIIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNTAVSNVYEKM  244
            SQLLAVERAFSSQIS+IEGPPGTGKTQTILNIVANILIQNKTVAILSNNN+AVSNVYEKM
Sbjct  181  SQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKM  240

Query  245  DKQGLGYLIARLGSSENRQRFFSTLSLIPDEVLSDSPPIGVIDDVLQQVKKYLNAINQVA  304
            DKQ LGY++ARLGS+ENRQ+FFST    ++EVL+DSP+   IDDVLQQVKK LNAINQVA
Sbjct  241  DKQQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVA  300

Query  305  LLKAEIDELNIEHKYLQQWQERNllseesfasshhfssRKTADLMAYIHYLSGRRVGFKN  364
             LKAEI+ELNIE KYLQQWQ +NL +EE F+   +FSS+KT+DLMAYIHYLS+RR+GF+N
Sbjct  301  SLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRN  360

Query  365  RIDLFLNFRIIRVKPLKNQEKRLGIFTSLQLSFYKKSIQEKQKSLDEYNVILATSDFNTL  424
            RIDL+LNFRI++VKPL   E+RL++FTSLQLS+Y K+I+EKQ SL+EY+ +L  SDF+ L
Sbjct  361  RIDLLLNFRILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFKIL  420

Query  425  LGQLVSLSMDYLKGYLKKSIPITKSFFAETYKDNFNQFIKRFPIIGSSTHSIINSLGNGA  484
            LG+L S SM YLK  L+++++   SF AETY+D+F++FIKRFP+IGSSTHSIINS+G+GA
Sbjct  421  LGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGKGA  480

Query  485  ILDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPH--VPVFSSSIPPTEYYNCVTN  542
            +LDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPH  V + SS+ PP+EYYNC   
Sbjct  481  LLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCEKY  540

Query  543  SLLDSLCILFGKTAPVTLLKEHYRCHPKIIQFCNKQFYDNTLIPLTTDSGESSLSLVITA  602
            SLLDS+C+LF +  PVTLLKEHYRCHPKIIQFCNK FYDN+LIPLT DSGE+SLSLVITA
Sbjct  541  SLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLVITA  600

Query  603  KGNHTRNFSNLRELESIEEHSWDEKSSRGYIAPYNAQVNLAETVLPADFVKSTVHKFQGR  662
            KGNHTRNFSNLRELES+E H WDE SSRGYIAPYNAQVNLAE VLPADFVKSTVHKFQGR
Sbjct  601  KGNHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGR  660

Query  663  ECDEIVFSTVLDRKHSSQQSKNIMFVDDPNLVNVAVSRARKKFTLVTGDDVFENHGKHIA  722
            ECDEIVFSTVLD+K+SSQ+S+NI FVD+P+LVNVAVSRAR+KFTLVTG+DVFE H+ HIA
Sbjct  661  ECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIA  720

Query  723  ALIRYIKYYANDEDICESPVISAFDLLYSEYDKSLERLNIQLNPDDSNFKSEQIVASLLR  782
            ALIRYIKYYA+D +I ESPVISAFDLLYSEYDKSLERLN +LN++DS+FKSEQIVA LLR
Sbjct  721  ALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLR  780

Query  783  DALSLDNYRNMMFHSQIALNQLVSLELGEFTPRELSFMHNRASCDFVIYYKVGKTPLGVI  842
            D LS D+YR+MMFHSQIALNQLV LE G+FT RE  FM+NRASCDFV+YYKVGKTPLGVI
Sbjct  781  DILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVI  840

Query  843  EVDGGYHLESPQIERDELKNSILKKCNLPLLRLCTIDSNIEGKLGAFLSGL  893
            EVDGGYHL S Q ERDELKNSILKKC LPLLRL TIDS+IEGKLGAFLSGL
Sbjct  841  EVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGL  891

5) O3M_15650 in NC_018650


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score = 1150 bits (4363),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 730/739 (99%), Positives = 737/739 (99%), Gaps = 0/739 (0%)

Query  1    MHAYCSGQSKKRDSPWGLIFPFGLNESQLLAVERAFSSQISVIEGPPGTGKTQTILNIVA  60
            +HAYCSGQSKKRDSPWGLIFPFGLNESQLLAVERAFSSQISVIEGPPGTGKTQTILNIVA
Sbjct  155  LHAYCSGQSKKRDSPWGLIFPFGLNESQLLAVERAFSSQISVIEGPPGTGKTQTILNIVA  214

Query  61   NILIQNKTVAILSNNNSAVSNVYEKMDKQQLGYVVARLGSTENRQQFFSTSISRSEEVLP  120
            NILIQNKTVAILSNNNSAVSNVYEKMDKQQLGYVVARLGSTENRQQFFSTSISRSEEVLP
Sbjct  215  NILIQNKTVAILSNNNSAVSNVYEKMDKQQLGYVVARLGSTENRQQFFSTSISRSEEVLP  274

Query  121  DSPSANAIDDVLQQVKKHLNAINQVASLKAEINELNIEYKYLQQWQSQNLRPEELFSHKY  180
            DSPSANAIDDVLQQVKKHLNAINQVASLKAEINELNIEYKYLQQWQSQNLRPEELFSHKY
Sbjct  275  DSPSANAIDDVLQQVKKHLNAINQVASLKAEINELNIEYKYLQQWQSQNLRPEELFSHKY  334

Query  181  RFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYY  240
            RFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYY
Sbjct  335  RFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYY  394

Query  241  EKTIREKQISLNEYEEVFKKSDFKILLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDE  300
            EK+IREKQISLNEYE V+KKSDFKILLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDE
Sbjct  395  EKAIREKQISLNEYEGVLKKSDFKILLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDE  454

Query  301  FDRFIKRFPVIGSSTHSIINSIGKGALLDYVIIDEASQQDIVPGILGLGCARNVIVVGDR  360
            FD+FIKRFPVIGSSTHSIINSIGKGALLDYVIIDEASQQDIVPGILGLGCARNVIVVGDR
Sbjct  455  FDHFIKRFPVIGSSTHSIINSIGKGALLDYVIIDEASQQDIVPGILGLGCARNVIVVGDR  514

Query  361  KQlphvpvllpnspsppAEYYNCEKYSLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCN  420
            KQLPHVPVLLP+SP+PPAEYYNCEKYSLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCN
Sbjct  515  KQLPHVPVLLPSSPPPPAEYYNCEKYSLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCN  574

Query  421  KQFYDNALIPLTVDSGEASLSLVITAKGNHTRNFSNLRELESLEGHYWDEESSRGYIAPY  480
            K FYDNALIPLTVDSGEASLSLVITAKGNHTRNFSNLRELESLEGHYWDEESSRGYIAPY
Sbjct  575  KLFYDNALIPLTVDSGEASLSLVITAKGNHTRNFSNLRELESLEGHYWDEESSRGYIAPY  634

Query  481  NAQVNLAEKVLPADFVKSTVHKFQGRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNV  540
            NAQVNLAEKVLPADFVKSTVHKFQGRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNV
Sbjct  635  NAQVNLAEKVLPADFVKSTVHKFQGRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNV  694

Query  541  AVSRARNKFTLVTGNDVFERHAGHIAALIRYIKYYADDGEVFESPVISAFDLLYSEYDKS  600
            AVSRARNKFTLVTGNDVFERHAGHIAALIRYIKYYADDGE+FESPVISAFDLLYSEYDKS
Sbjct  695  AVSRARNKFTLVTGNDVFERHAGHIAALIRYIKYYADDGEIFESPVISAFDLLYSEYDKS  754

Query  601  LERLNSRLNSNDSHFKSEQIVACLLRDILSQDSYRSMMFHSQIALNQLVLLERGDFTHRE  660
            LERLNSRLNSNDSHFKSEQIVACLLRDILSQDSYRSMMFHSQIALNQLVLLERGDFTHRE
Sbjct  755  LERLNSRLNSNDSHFKSEQIVACLLRDILSQDSYRSMMFHSQIALNQLVLLERGDFTHRE  814

Query  661  QLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLR  720
            QLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLR
Sbjct  815  QLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLR  874

Query  721  TIDSDIEGKLGAFLSGLTG  739
            TIDSDIEGKLGAFLSGLTG
Sbjct  875  TIDSDIEGKLGAFLSGLTG  893

6) O3O_09630 in NC_018661


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score = 1150 bits (4363),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 730/739 (99%), Positives = 737/739 (99%), Gaps = 0/739 (0%)

Query  1    MHAYCSGQSKKRDSPWGLIFPFGLNESQLLAVERAFSSQISVIEGPPGTGKTQTILNIVA  60
            +HAYCSGQSKKRDSPWGLIFPFGLNESQLLAVERAFSSQISVIEGPPGTGKTQTILNIVA
Sbjct  155  LHAYCSGQSKKRDSPWGLIFPFGLNESQLLAVERAFSSQISVIEGPPGTGKTQTILNIVA  214

Query  61   NILIQNKTVAILSNNNSAVSNVYEKMDKQQLGYVVARLGSTENRQQFFSTSISRSEEVLP  120
            NILIQNKTVAILSNNNSAVSNVYEKMDKQQLGYVVARLGSTENRQQFFSTSISRSEEVLP
Sbjct  215  NILIQNKTVAILSNNNSAVSNVYEKMDKQQLGYVVARLGSTENRQQFFSTSISRSEEVLP  274

Query  121  DSPSANAIDDVLQQVKKHLNAINQVASLKAEINELNIEYKYLQQWQSQNLRPEELFSHKY  180
            DSPSANAIDDVLQQVKKHLNAINQVASLKAEINELNIEYKYLQQWQSQNLRPEELFSHKY
Sbjct  275  DSPSANAIDDVLQQVKKHLNAINQVASLKAEINELNIEYKYLQQWQSQNLRPEELFSHKY  334

Query  181  RFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYY  240
            RFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYY
Sbjct  335  RFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYY  394

Query  241  EKTIREKQISLNEYEEVFKKSDFKILLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDE  300
            EK+IREKQISLNEYE V+KKSDFKILLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDE
Sbjct  395  EKAIREKQISLNEYEGVLKKSDFKILLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDE  454

Query  301  FDRFIKRFPVIGSSTHSIINSIGKGALLDYVIIDEASQQDIVPGILGLGCARNVIVVGDR  360
            FD+FIKRFPVIGSSTHSIINSIGKGALLDYVIIDEASQQDIVPGILGLGCARNVIVVGDR
Sbjct  455  FDHFIKRFPVIGSSTHSIINSIGKGALLDYVIIDEASQQDIVPGILGLGCARNVIVVGDR  514

Query  361  KQlphvpvllpnspsppAEYYNCEKYSLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCN  420
            KQLPHVPVLLP+SP+PPAEYYNCEKYSLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCN
Sbjct  515  KQLPHVPVLLPSSPPPPAEYYNCEKYSLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCN  574

Query  421  KQFYDNALIPLTVDSGEASLSLVITAKGNHTRNFSNLRELESLEGHYWDEESSRGYIAPY  480
            K FYDNALIPLTVDSGEASLSLVITAKGNHTRNFSNLRELESLEGHYWDEESSRGYIAPY
Sbjct  575  KLFYDNALIPLTVDSGEASLSLVITAKGNHTRNFSNLRELESLEGHYWDEESSRGYIAPY  634

Query  481  NAQVNLAEKVLPADFVKSTVHKFQGRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNV  540
            NAQVNLAEKVLPADFVKSTVHKFQGRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNV
Sbjct  635  NAQVNLAEKVLPADFVKSTVHKFQGRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNV  694

Query  541  AVSRARNKFTLVTGNDVFERHAGHIAALIRYIKYYADDGEVFESPVISAFDLLYSEYDKS  600
            AVSRARNKFTLVTGNDVFERHAGHIAALIRYIKYYADDGE+FESPVISAFDLLYSEYDKS
Sbjct  695  AVSRARNKFTLVTGNDVFERHAGHIAALIRYIKYYADDGEIFESPVISAFDLLYSEYDKS  754

Query  601  LERLNSRLNSNDSHFKSEQIVACLLRDILSQDSYRSMMFHSQIALNQLVLLERGDFTHRE  660
            LERLNSRLNSNDSHFKSEQIVACLLRDILSQDSYRSMMFHSQIALNQLVLLERGDFTHRE
Sbjct  755  LERLNSRLNSNDSHFKSEQIVACLLRDILSQDSYRSMMFHSQIALNQLVLLERGDFTHRE  814

Query  661  QLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLR  720
            QLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLR
Sbjct  815  QLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLR  874

Query  721  TIDSDIEGKLGAFLSGLTG  739
            TIDSDIEGKLGAFLSGLTG
Sbjct  875  TIDSDIEGKLGAFLSGLTG  893

7) O3K_15665 in NC_018658


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score = 1150 bits (4363),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 730/739 (99%), Positives = 737/739 (99%), Gaps = 0/739 (0%)

Query  1    MHAYCSGQSKKRDSPWGLIFPFGLNESQLLAVERAFSSQISVIEGPPGTGKTQTILNIVA  60
            +HAYCSGQSKKRDSPWGLIFPFGLNESQLLAVERAFSSQISVIEGPPGTGKTQTILNIVA
Sbjct  155  LHAYCSGQSKKRDSPWGLIFPFGLNESQLLAVERAFSSQISVIEGPPGTGKTQTILNIVA  214

Query  61   NILIQNKTVAILSNNNSAVSNVYEKMDKQQLGYVVARLGSTENRQQFFSTSISRSEEVLP  120
            NILIQNKTVAILSNNNSAVSNVYEKMDKQQLGYVVARLGSTENRQQFFSTSISRSEEVLP
Sbjct  215  NILIQNKTVAILSNNNSAVSNVYEKMDKQQLGYVVARLGSTENRQQFFSTSISRSEEVLP  274

Query  121  DSPSANAIDDVLQQVKKHLNAINQVASLKAEINELNIEYKYLQQWQSQNLRPEELFSHKY  180
            DSPSANAIDDVLQQVKKHLNAINQVASLKAEINELNIEYKYLQQWQSQNLRPEELFSHKY
Sbjct  275  DSPSANAIDDVLQQVKKHLNAINQVASLKAEINELNIEYKYLQQWQSQNLRPEELFSHKY  334

Query  181  RFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYY  240
            RFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYY
Sbjct  335  RFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYY  394

Query  241  EKTIREKQISLNEYEEVFKKSDFKILLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDE  300
            EK+IREKQISLNEYE V+KKSDFKILLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDE
Sbjct  395  EKAIREKQISLNEYEGVLKKSDFKILLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDE  454

Query  301  FDRFIKRFPVIGSSTHSIINSIGKGALLDYVIIDEASQQDIVPGILGLGCARNVIVVGDR  360
            FD+FIKRFPVIGSSTHSIINSIGKGALLDYVIIDEASQQDIVPGILGLGCARNVIVVGDR
Sbjct  455  FDHFIKRFPVIGSSTHSIINSIGKGALLDYVIIDEASQQDIVPGILGLGCARNVIVVGDR  514

Query  361  KQlphvpvllpnspsppAEYYNCEKYSLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCN  420
            KQLPHVPVLLP+SP+PPAEYYNCEKYSLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCN
Sbjct  515  KQLPHVPVLLPSSPPPPAEYYNCEKYSLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCN  574

Query  421  KQFYDNALIPLTVDSGEASLSLVITAKGNHTRNFSNLRELESLEGHYWDEESSRGYIAPY  480
            K FYDNALIPLTVDSGEASLSLVITAKGNHTRNFSNLRELESLEGHYWDEESSRGYIAPY
Sbjct  575  KLFYDNALIPLTVDSGEASLSLVITAKGNHTRNFSNLRELESLEGHYWDEESSRGYIAPY  634

Query  481  NAQVNLAEKVLPADFVKSTVHKFQGRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNV  540
            NAQVNLAEKVLPADFVKSTVHKFQGRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNV
Sbjct  635  NAQVNLAEKVLPADFVKSTVHKFQGRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNV  694

Query  541  AVSRARNKFTLVTGNDVFERHAGHIAALIRYIKYYADDGEVFESPVISAFDLLYSEYDKS  600
            AVSRARNKFTLVTGNDVFERHAGHIAALIRYIKYYADDGE+FESPVISAFDLLYSEYDKS
Sbjct  695  AVSRARNKFTLVTGNDVFERHAGHIAALIRYIKYYADDGEIFESPVISAFDLLYSEYDKS  754

Query  601  LERLNSRLNSNDSHFKSEQIVACLLRDILSQDSYRSMMFHSQIALNQLVLLERGDFTHRE  660
            LERLNSRLNSNDSHFKSEQIVACLLRDILSQDSYRSMMFHSQIALNQLVLLERGDFTHRE
Sbjct  755  LERLNSRLNSNDSHFKSEQIVACLLRDILSQDSYRSMMFHSQIALNQLVLLERGDFTHRE  814

Query  661  QLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLR  720
            QLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLR
Sbjct  815  QLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLR  874

Query  721  TIDSDIEGKLGAFLSGLTG  739
            TIDSDIEGKLGAFLSGLTG
Sbjct  875  TIDSDIEGKLGAFLSGLTG  893

8) ETAF_2235 in NC_017309


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score = 1150 bits (4362),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 703/891 (79%), Positives = 804/891 (91%), Gaps = 2/891 (0%)

Query  1    MVTICVDGENKTNKISDWTLWSGYGNGDVMLTCHFRSGKKYTRPLSVCQITPTSTLHNVF  60
            MVTICVDGENKT+KI+DWTLW+G ++G+VMLTCHFRSGKKYTRPLSVCQITPT  L+NVF
Sbjct  1    MVTICVDGENKTHKITDWTLWAGNDDGEVMLTCHFRSGKKYTRPLSVCQITPTVNLRNVF  60

Query  61   LERKGFAVTSRAERVILYGNKYAVVYYSGNDKPYIMKTAGLNFQACSNFTEHAVFDYFCR  120
            LERKG AVTSRAERVI+YG+KYA VYY   ++PYIMKT+GL+FQ CS FTEHAVF+Y+CR
Sbjct  61   LERKGDAVTSRAERVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR  120

Query  121  IAEERISDARGNDRSIAENVLRQIKRIVPHPDTALHAYCSGQNKKRDFSGNLIFPFGLNE  180
            +A+ERI  ARGN+R+I EN+LRQIK+IVPHPD+ALHAYCSGQ+KKRD +  LIFPFGLNE
Sbjct  121  VANERIFYARGNNRNIDENILRQIKKIVPHPDAALHAYCSGQSKKRDSPWGLIFPFGLNE  180

Query  181  SQLLAVERAFSSQISIIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNTAVSNVYEKM  240
            SQLLAVERAFSSQIS+IEGPPGTGKTQTILNIVANILIQNKTVAILSNNN+AVSNVYEKM
Sbjct  181  SQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKM  240

Query  241  DKQGLGYLIARLGSSENRQRFFSTLSLIPDEVLSDSPPIGVIDDVLQQVKKYLNAINQVA  300
            DKQ LGY++ARLGS+ENRQ+FFST    ++EVL+DSP+   IDDVLQQVKK LNAINQVA
Sbjct  241  DKQQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVA  300

Query  301  LLKAEIDELNIEHKYLQQWQERNllseesfasshhfssRKTADLMAYIHYLSGRRVGFKN  360
             LKAEI+ELNIE KYLQQWQ +NL +EE F+   +FSS+KT+DLMAYIHYLS+RR+GF+N
Sbjct  301  SLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRN  360

Query  361  RIDLFLNFRIIRVKPLKNQEKRLGIFTSLQLSFYKKSIQEKQKSLDEYNVILATSDFNTL  420
            RIDL+LNFRI++VKPL   E+RL++FTSLQLS+Y K+I+EKQ SL+EY+ +L  SDF+ L
Sbjct  361  RIDLLLNFRILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFKIL  420

Query  421  LGQLVSLSMDYLKGYLKKSIPITKSFFAETYKDNFNQFIKRFPIIGSSTHSIINSLGNGA  480
            LG+L S SM YLK  L+++++   SF AETY+D+F++FIKRFP+IGSSTHSIINS+G+GA
Sbjct  421  LGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGKGA  480

Query  481  ILDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPH--VPVFSSSIPPTEYYNCVTN  538
            +LDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPH  V + SS+ PP+EYYNC   
Sbjct  481  LLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCEKY  540

Query  539  SLLDSLCILFGKTAPVTLLKEHYRCHPKIIQFCNKQFYDNTLIPLTTDSGESSLSLVITA  598
            SLLDS+C+LF +  PVTLLKEHYRCHPKIIQFCNK FYDN+LIPLT DSGE+SLSLVITA
Sbjct  541  SLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLVITA  600

Query  599  KGNHTRNFSNLRELESIEEHSWDEKSSRGYIAPYNAQVNLAETVLPADFVKSTVHKFQGR  658
            KGNHTRNFSNLRELES+E H WDE SSRGYIAPYNAQVNLAE VLPADFVKSTVHKFQGR
Sbjct  601  KGNHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGR  660

Query  659  ECDEIVFSTVLDRKHSSQQSKNIMFVDDPNLVNVAVSRARKKFTLVTGDDVFENHGKHIA  718
            ECDEIVFSTVLD+K+SSQ+S+NI FVD+P+LVNVAVSRAR+KFTLVTG+DVFE H+ HIA
Sbjct  661  ECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIA  720

Query  719  ALIRYIKYYANDEDICESPVISAFDLLYSEYDKSLERLNIQLNPDDSNFKSEQIVASLLR  778
            ALIRYIKYYA+D +I ESPVISAFDLLYSEYDKSLERLN +LN++DS+FKSEQIVA LLR
Sbjct  721  ALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLR  780

Query  779  DALSLDNYRNMMFHSQIALNQLVSLELGEFTPRELSFMHNRASCDFVIYYKVGKTPLGVI  838
            D LS D+YR+MMFHSQIALNQLV LE G+FT RE  FM+NRASCDFV+YYKVGKTPLGVI
Sbjct  781  DILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVI  840

Query  839  EVDGGYHLESPQIERDELKNSILKKCNLPLLRLCTIDSNIEGKLGAFLSGL  889
            EVDGGYHL S Q ERDELKNSILKKC LPLLRL TIDS+IEGKLGAFLSGL
Sbjct  841  EVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGL  891

9) Z1202 in NC_002655


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score = 1097 bits (4160),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 699/711 (99%), Positives = 706/711 (99%), Gaps = 0/711 (0%)

Query  1    MLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKMDK  60
            +LAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKMDK
Sbjct  183  LLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKMDK  242

Query  61   QQLGYVMARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVASL  120
            QQLGYV+ARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVASL
Sbjct  243  QQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVASL  302

Query  121  KAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRNRI  180
            KAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRNRI
Sbjct  303  KAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRNRI  362

Query  181  DLLLNFMILKVKPLMIPERRLALFTSLQLSYYEKNIREKQISLNEYEEAFKKSDFKILLG  240
            DLLLNF ILKVKPLMIPERRLALFTSLQLSYYEK IREKQISLNEYE  +KKSDFKILLG
Sbjct  363  DLLLNFRILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFKILLG  422

Query  241  RLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDRFIKRFPIIGSSTHSIINSIGKGALL  300
            RLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFD+FIKRFP+IGSSTHSIINSIGKGALL
Sbjct  423  RLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGKGALL  482

Query  301  DYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQlphvpvllpnspsppAEYYNCEKYSL  360
            DYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLP+SP+PPAEYYNCEKYSL
Sbjct  483  DYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCEKYSL  542

Query  361  LDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKQFYDNALIPLTVDSGEASLSLVITAKG  420
            LDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNK FYDNALIPLTVDSGEASLSLVITAKG
Sbjct  543  LDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLVITAKG  602

Query  421  NHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGREC  480
            NHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGREC
Sbjct  603  NHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGREC  662

Query  481  DEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIAAL  540
            DEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIAAL
Sbjct  663  DEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIAAL  722

Query  541  IRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLRDI  600
            IRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLRDI
Sbjct  723  IRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLRDI  782

Query  601  LSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVIEV  660
            LSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVIEV
Sbjct  783  LSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVIEV  842

Query  661  DGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG  711
            DGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG
Sbjct  843  DGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG  893

10) Z1642 in NC_002655


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score = 1097 bits (4160),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 699/711 (99%), Positives = 706/711 (99%), Gaps = 0/711 (0%)

Query  1    MLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKMDK  60
            +LAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKMDK
Sbjct  183  LLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKMDK  242

Query  61   QQLGYVMARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVASL  120
            QQLGYV+ARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVASL
Sbjct  243  QQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVASL  302

Query  121  KAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRNRI  180
            KAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRNRI
Sbjct  303  KAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRNRI  362

Query  181  DLLLNFMILKVKPLMIPERRLALFTSLQLSYYEKNIREKQISLNEYEEAFKKSDFKILLG  240
            DLLLNF ILKVKPLMIPERRLALFTSLQLSYYEK IREKQISLNEYE  +KKSDFKILLG
Sbjct  363  DLLLNFRILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFKILLG  422

Query  241  RLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDRFIKRFPIIGSSTHSIINSIGKGALL  300
            RLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFD+FIKRFP+IGSSTHSIINSIGKGALL
Sbjct  423  RLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGKGALL  482

Query  301  DYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQlphvpvllpnspsppAEYYNCEKYSL  360
            DYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLP+SP+PPAEYYNCEKYSL
Sbjct  483  DYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCEKYSL  542

Query  361  LDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKQFYDNALIPLTVDSGEASLSLVITAKG  420
            LDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNK FYDNALIPLTVDSGEASLSLVITAKG
Sbjct  543  LDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLVITAKG  602

Query  421  NHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGREC  480
            NHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGREC
Sbjct  603  NHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGREC  662

Query  481  DEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIAAL  540
            DEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIAAL
Sbjct  663  DEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIAAL  722

Query  541  IRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLRDI  600
            IRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLRDI
Sbjct  723  IRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLRDI  782

Query  601  LSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVIEV  660
            LSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVIEV
Sbjct  783  LSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVIEV  842

Query  661  DGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG  711
            DGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG
Sbjct  843  DGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG  893

11) ECs1384 in NC_002695


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score =  998 bits (3783),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 634/645 (99%), Positives = 640/645 (99%), Gaps = 0/645 (0%)

Query  1    MARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVASLKAEINE  60
            +ARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVASLKAEINE
Sbjct  249  VARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVASLKAEINE  308

Query  61   LNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNF  120
            LNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNF
Sbjct  309  LNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNF  368

Query  121  MILKVKPLMIPERRLALFTSLQLSYYEKNIREKQISLNEYEEAFKKSDFKILLGRLTSWS  180
             ILKVKPLMIPERRLALFTSLQLSYYEK IREKQISLNEYE  +KKSDFKILLGRLTSWS
Sbjct  369  RILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFKILLGRLTSWS  428

Query  181  MLYLKQHLRRNVSTRSSFSAETYRDEFDRFIKRFPIIGSSTHSIINSIGKGALLDYVIID  240
            MLYLKQHLRRNVSTRSSFSAETYRDEFD+FIKRFP+IGSSTHSIINSIGKGALLDYVIID
Sbjct  429  MLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGKGALLDYVIID  488

Query  241  EASQQDIVPGILGLGCARNVIVVGDRKQlphvpvllpnspsppAEYYNCEKYSLLDSVCM  300
            EASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLP+SP+PPAEYYNCEKYSLLDSVCM
Sbjct  489  EASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCEKYSLLDSVCM  548

Query  301  LFRNMVPVTLLKEHYRCHPKIIQFCNKQFYDNALIPLTVDSGEASLSLVITAKGNHTRNF  360
            LFRNMVPVTLLKEHYRCHPKIIQFCNK FYDNALIPLTVDSGEASLSLVITAKGNHTRNF
Sbjct  549  LFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLVITAKGNHTRNF  608

Query  361  SNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGRECDEIVFS  420
            SNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGRECDEIVFS
Sbjct  609  SNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGRECDEIVFS  668

Query  421  TVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIAALIRYIKY  480
            TVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIAALIRYIKY
Sbjct  669  TVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIAALIRYIKY  728

Query  481  YADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLRDILSQDSY  540
            YADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLRDILSQDSY
Sbjct  729  YADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLRDILSQDSY  788

Query  541  RSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHL  600
            RSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHL
Sbjct  789  RSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHL  848

Query  601  TSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG  645
            TSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG
Sbjct  849  TSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG  893

12) CDCO157_1323 in NC_017906


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score =  998 bits (3783),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 634/645 (99%), Positives = 640/645 (99%), Gaps = 0/645 (0%)

Query  1    MARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVASLKAEINE  60
            +ARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVASLKAEINE
Sbjct  249  VARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVASLKAEINE  308

Query  61   LNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNF  120
            LNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNF
Sbjct  309  LNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNF  368

Query  121  MILKVKPLMIPERRLALFTSLQLSYYEKNIREKQISLNEYEEAFKKSDFKILLGRLTSWS  180
             ILKVKPLMIPERRLALFTSLQLSYYEK IREKQISLNEYE  +KKSDFKILLGRLTSWS
Sbjct  369  RILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFKILLGRLTSWS  428

Query  181  MLYLKQHLRRNVSTRSSFSAETYRDEFDRFIKRFPIIGSSTHSIINSIGKGALLDYVIID  240
            MLYLKQHLRRNVSTRSSFSAETYRDEFD+FIKRFP+IGSSTHSIINSIGKGALLDYVIID
Sbjct  429  MLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGKGALLDYVIID  488

Query  241  EASQQDIVPGILGLGCARNVIVVGDRKQlphvpvllpnspsppAEYYNCEKYSLLDSVCM  300
            EASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLP+SP+PPAEYYNCEKYSLLDSVCM
Sbjct  489  EASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCEKYSLLDSVCM  548

Query  301  LFRNMVPVTLLKEHYRCHPKIIQFCNKQFYDNALIPLTVDSGEASLSLVITAKGNHTRNF  360
            LFRNMVPVTLLKEHYRCHPKIIQFCNK FYDNALIPLTVDSGEASLSLVITAKGNHTRNF
Sbjct  549  LFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLVITAKGNHTRNF  608

Query  361  SNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGRECDEIVFS  420
            SNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGRECDEIVFS
Sbjct  609  SNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGRECDEIVFS  668

Query  421  TVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIAALIRYIKY  480
            TVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIAALIRYIKY
Sbjct  669  TVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIAALIRYIKY  728

Query  481  YADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLRDILSQDSY  540
            YADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLRDILSQDSY
Sbjct  729  YADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLRDILSQDSY  788

Query  541  RSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHL  600
            RSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHL
Sbjct  789  RSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHL  848

Query  601  TSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG  645
            TSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG
Sbjct  849  TSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGLTG  893

13) CJA_1550 in NC_010995


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score =  918 bits (3476),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 541/888 (61%), Positives = 719/888 (81%), Gaps = 4/888 (0%)

Query  17   MISIYVDGDNKTPKITNWTLRYSDTQGELLLTCHFRSGKTYTRPLAACTITPTEEVRGKL  76
            M++I VDG+NKT KIT+WTL+ ++ +GE++LTCHFRSGK YTRPL+ C ITPT ++R  +
Sbjct  1    MVTICVDGENKTHKITDWTLWAGNDDGEVMLTCHFRSGKKYTRPLSVCQITPTVNLRNVF  60

Query  77   LGKPGSLLFSYVDKVIMYGRKYAVVYYPGNNKPYVMKADDIKFSPKTSLKTEAIFSYFSA  136
            L + G  + S  ++VI+YG KYA VYY   ++PY+MK+ ++ F   +++  +A+F+Y+  
Sbjct  61   LERKGDAVTSRAERVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR  120

Query  137  VAQARIDHATGSDKRIAENVLRQMEKIVPHQDTAFHAYCTGQNQSRKQAKYYIYPFGINE  196
            VA+ RI  A G+++ I EN+LRQ+ KIVPH D+A+HAYC+GQ++ R  +   I+PFG+NE
Sbjct  121  VANERIFYARGNNRNIDENILRQIKKIVPHPDAALHAYCSGQSKKRDSPWGLIFPFGLNE  180

Query  197  SQLNAVEQAFSSQISLIEGPPGTGKTQTILNILANILLQKKTVAILSNNNAAVENVYEKL  256
            SQL AVE+AFSSQIS+IEGPPGTGKTQTILNI+ANIL+Q+KTVAILSNNN+AV NVYEK+
Sbjct  181  SQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKM  240

Query  257  QKAELDYLVARLGSTDNRKTFFAAPLNVPSEEPASAPDIHAIEAIRQKLKLHLYAQNQAA  316
            +K +L+Y+VARLGST+NR+ FF+++++ + E  + +P  +AI+ + Q++K HL A NQ A
Sbjct  241  DKQQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVA  300

Query  317  QLQGEIDELAIEHQHLLQWQRENLTIAPLPIEKYKLSPQKTTDLMAYISHLAMKRITIKD  376
             L++EI+EL IE + L QWQ +NL    L  +KY++S+QKTTDLMAYI  L+ +RI +++
Sbjct  301  SLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRN  360

Query  377  RIKLLMNFRIFRIKPFDDWEKRKSLIYTLQLHYYEKSLQHKKASLAVHQKELEDNQFKTL  436
            RI LL+NFRI+++KP+   E+R +L+ +LQL YYEK++++K+ SL   +  L  ++FK L
Sbjct  361  RIDLLLNFRILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFKIL  420

Query  437  LNNLTNSSMAYLKNHLYQHIPHQEEFSESNYNKKFDSFVNRYPIIGSSTHsiinsianna  496
            L  LT+ SM YLK+HL ++++ +  FS   Y   FD F++R+P+IGSSTHSIINSI++ A
Sbjct  421  LGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGKGA  480

Query  497  iLDYVIIDEASQQDIIPGILGLGCTRNLIIVGDRKQLPH--VPVNIDITPPTEFYNCAKY  554
            +LDYVIIDEASQQDI+PGILGLGC+RN+I+VGDRKQLPH  V +     PP+E+YNC KY
Sbjct  481  LLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCEKY  540

Query  555  SLLDSCIGIFNNRLPTTLLKEHYRCHPKIIQFCNKQFYNNQLIPMTQDTGENALSLIVTA  614
            SLLDS   +F N +P TLLKEHYRCHPKIIQFCNK FY+N LIP+T D+GE +LSL++TA
Sbjct  541  SLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLVITA  600

Query  615  KGNHTRNFSNLRELESLGALEWDAQNSRGFIAPYNAQISLSQTHLPGDFVKSTVHKFQGR  674
            KGNHTRNFSNLRELESL +  WD ++SRG+IAPYNAQ++L++  LP+DFVKSTVHKFQGR
Sbjct  601  KGNHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGR  660

Query  675  ECDEIIFSTVLDKKNSSQ--KNIGFVDDPYLINVAVSRAKHNFTLVTGDNVFTKKNGHIA  732
            ECDEI+FSTVLDKK SSQ  +NI+FVD+P L+NVAVSRA+++FTLVTG++VF +  GHIA
Sbjct  661  ECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIA  720

Query  733  ALIRYIEYYADDSQIYHSPVISAFDLLYEEYDQSLEKLKARLNPNDSKFMSEQIAARLLR  792
            ALIRYI YYADD++I++SPVISAFDLLY EYD+SLE+L++RLN+NDS F SEQI A LLR
Sbjct  721  ALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLR  780

Query  793  DILSLQAYQAITFHTQVALIQLVSLTNNTFTPRELNFMKNRACCDFVLYFKVGKTPIGVI  852
            DILS ++Y+++ FH+Q+AL QLV L    FT RE  FM+NRA CDFV+Y+KVGKTP+GVI
Sbjct  781  DILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVI  840

Query  853  EVDGRSHSTEEQAERDELKNNILKKSNIPLLRLKTIDSNIEEKIAEFL  900
            EVDG  H T  QAERDELKN+ILKK  +PLLRL+TIDS+IE K++ FL
Sbjct  841  EVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFL  888

14) AHA_1063 in NC_008570


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score =  818 bits (3097),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 481/898 (54%), Positives = 695/898 (78%), Gaps = 13/898 (1%)

Query  1    MISILVDGEDKTAKISDWTIRWNDKHET-LEVTCHFPSSKKYTRPLNHCQVSPSRELSNV  59
            M++I VDGE+KT KI+DWT+ W ++++  + +TCHF S+KKYTRPL+ CQ++P+ +L NV
Sbjct  1    MVTICVDGENKTHKITDWTL-WAGNDDGEVMLTCHFRSGKKYTRPLSVCQITPTVNLRNV  59

Query  60   LLTKPGSTIVKPIDKAVIYGERYAVVHYLGGNRPYVHKMDGIVFSAPTSIKDTPVFSYFT  119
            +L + G ++    ++ +IYG++YA V Y  G+RPY+ K  G+ F   +++ + +VF+Y+ 
Sbjct  60   FLERKGDAVTSRAERVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLC  119

Query  120  AVASARHAQAQSKDDREIASNVVTQLGKLPAIASTALQAYCTGRNGMLAPGQGLIYPFGL  179
             VA+ R   A++ ++R+I  N++ Q+ K+ + + +AL+AYC+G++    +  GLI+PFGL
Sbjct  120  RVANERIFYARG-NNRNIDENILRQIKKIVPHPDAALHAYCSGQSKKRDSPWGLIFPFGL  178

Query  180  NESQYQAVERAFSAQVSVIEGPPGTGKTQTILNILANILLRGQTvavlsnnnaavanvYE  239
            NESQ  AVERAFS+Q+SVIEGPPGTGKTQTILNI+ANIL++ +TVA+LSNNN+AV+NVYE
Sbjct  179  NESQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYE  238

Query  240  KLEKCGLGYLVAKLGNKDNREAFFANLpawpasaprpapsQEEIQGLLTRLKQHLQDHNR  299
            K++K  LGY+VA+LG+ +NR+ FF+   +++      +PS + I+++L ++K+HL+  N+
Sbjct  239  KMDKQQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQ  298

Query  300  AAQLQIELDELVIERRYLQQWQAENGVQATGSLDKYGLTPRKTADLMAYLAHLGEQRVKL  359
             A L+ E++EL IE +YLQQWQ++N        +KY ++++KT+DLMAY+  L+++R+ +
Sbjct  299  VASLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGF  358

Query  360  KDRIELLFKFRVFRTKPLAEGEARMAAFHALQMHYYDKSLQDKETELRACRESLSRANFT  419
            ++RI+LL++FR+++ KPL   E R+A F +LQ+ YY+K++++K+  L      L +++F 
Sbjct  359  RNRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFK  418

Query  420  ALLKELTTASMHHLKQHLQGQVPPRDSFDVKTYRMDFDAFVQRFPILGSGTHSIVNSIAP  479
             LL  LT+ SM  LKQHL+ +V+ R SF   TYR +FD F++RFP++GS+THSI+NSI+ 
Sbjct  419  ILLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGK  478

Query  480  GAILDYVIIDEASLQDIVPGILPLGCAKNLIVVGDNRQLPH--IPVKLGLQAPAEAYDCE  537
            GA+LDYVIIDEAS QDIVPGIL LGCA+N+IVVGD +QLPH  + +  +  +PAE Y+CE
Sbjct  479  GALLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCE  538

Query  538  RYSLLDSCIAVFQDALPRTLLKEHYRCHPRIIQFCNQQFYDNALVPMTVDNGEEPLRLVV  597
            +YSLLDS   +F++ +P TLLKEHYRCHP+IIQFCN+ FYDNAL+P+TVD+GE +L LV+
Sbjct  539  KYSLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLVI  598

Query  598  TAKGNHARKNTNLRELDSLLKVLEDEGTPVAVDGEGRGYIAPFRAQVSLSEKHLPADFVN  657
            TAKGNH+R+ +NLREL+SL             +  +RGYIAP+ AQV+L+EK LPADFV+
Sbjct  599  TAKGNHTRNFSNLRELESL-------EGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVK  651

Query  658  DTVHKFQGRECDEIVFSTVLDKKRYNQAQGRLDFVDDPRMINVAVSRAKHRFTLVTGDEV  717
             TVHKFQGRECDEIVFSTVLDKKR +Q    + FVD+P ++NVAVSRA+++FTLVTG++V
Sbjct  652  STVHKFQGRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDV  711

Query  718  FTDNNGHIAALIRYISYYAQDEQIVRAPVVSAFDLLYHEYDQSLARLNARLRPEDSRYKS  777
            F  + GHIAALIRYI YYA+D +I  +PV+SAFDLLY EYD+SL RLN+RL ++DS++KS
Sbjct  712  FERHAGHIAALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKS  771

Query  778  EQIVAQLLREALSAPACQALKYHTQIRLEKLASPTNSDWTETQRAFMR-RASCDFVIYFK  836
            EQIVA LLR+ LS  + +++ +H+QI L++L     +D T+ ++ FMR RASCDFV+Y+K
Sbjct  772  EQIVACLLRDILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYK  831

Query  837  VGKTPIGVIEVDGGYHDQPVQAARDAMKNEILNKCRVPILRLRTVDSGIKQRISDFLG  894
            VGKTP+GVIEVDGGYH  +VQA RD +KN IL+KC +P+LRLRT+DS+I  +++ FL+
Sbjct  832  VGKTPLGVIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLS  889

15) bgla_1g24850 in NC_015381


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score =  815 bits (3084),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 464/901 (52%), Positives = 687/901 (77%), Gaps = 18/901 (1%)

Query  1    MVSIHVGGEDKTAEIKNWSIWNDKKEG-LKLRCLYSDKRSVIHPLNECRVSPVRELGEVL  59
            MV+I V+GE+KT  I +W++W ++ +G + L C +   +   +PL+ C+++P  +L +V+
Sbjct  1    MVTICVDGENKTHKITDWTLWAGNDDGEVMLTCHFRSGKKYTRPLSVCQITPTVNLRNVF  60

Query  60   LTKPGSVIVTRVAKATIYGERYAVVFYAGSDQPYIHKMDGIGFTASTAIKDGPIFRYFST  119
            L + G  + +R  +  IYG++YA V+Y  +++PYI K  G++F   +A+ + ++F Y+  
Sbjct  61   LERKGDAVTSRAERVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR  120

Query  120  VAKARVARAESDSDQKISANVVRQLEKLPDSADTALHAYCTGQNGALAAGKGLIYPFGVN  179
            VA+ R+  A ++ +++I  N++RQ+ K+   +D+ALHAYC+GQ+    +  GLI+PFG+N
Sbjct  121  VANERIFYARGN-NRNIDENILRQIKKIVPHPDAALHAYCSGQSKKRDSPWGLIFPFGLN  179

Query  180  ESQLVAVERAFNAQVSVIEGPPGTGKTQTILNIIANVLLRGQTVAVLSNNNAAVENVYEK  239
            ESQL+AVERAF++Q+SVIEGPPGTGKTQTILNI+AN+L++ +TVA+LSNNN+AV NVYEK
Sbjct  180  ESQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEK  239

Query  240  LEKCSLVHLVAKLGNQNNRDEFFANLppwpsgepepapTLDEIQTLLARLKQHLRDHNRA  299
            ++K  L  +VA+LG+ +NR++FF+   +++      +P+ + I+ +L ++K+HL   N+ 
Sbjct  240  MDKQQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQV  299

Query  300  AQLQVELDELQVERRYLQQWQADSGVQTATAASL--EKYGLSTSKGVDLMAYLAHLGEQR  357
            A L+ E++EL++E +YLQQWQ+    Q   +  L  +KY +S+ K  DLMAY+  L+++R
Sbjct  300  ASLKAEINELNIEYKYLQQWQS----QNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRR  355

Query  358  IRLKDRIELLLNFRIFRAKPLIQVDARLSVFHALQMRYYDKALHDKEVELQACRASLARG  417
            I +++RI+LLLNFRI++ KPL+  + RL++F +LQ+ YY+KA+++K++ L+   + L ++
Sbjct  356  IGFRNRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKS  415

Query  418  NFSVLLEELKTASMRHLKQHLHGLPRISDDFSTSTYLKQFDAFLRRFPILGSGTHSIVNS  477
            +F +LL  L + SM  LKQHL+        FS+ TY  +FD F++RFP++GS+THSI+NS
Sbjct  416  DFKILLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINS  475

Query  478  IPPGTILDYVIIDEASLQDIVPGILALGCAKNLIVVGDNRQLAYIPVKLGLPAP--ADAY  535
            I  G++LDYVIIDEAS QDIVPGIL+LGCA+N+IVVGD +QL+ +PV L  ++P  A+ Y
Sbjct  476  IGKGALLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYY  535

Query  536  DCERYSLLDSCIGVFKEALPRTLLKEHYRCHPRIIQFCNQQFYDNLLVPMTEDKGEAPLR  595
            +CE+YSLLDS   +F++ +P TLLKEHYRCHP+IIQFCN+ FYDN L+P+T D GEA+L 
Sbjct  536  NCEKYSLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLS  595

Query  596  LVVTGKGNHTRQNTNLRELDSLLKLLAEEGESVGLDDEGRGFIAPFRAQVNLSGKHLPAD  655
            LV+T+KGNHTR+ +NLREL+SL      EG+  + ++ +RG+IAP+ AQVNL+ K LPAD
Sbjct  596  LVITAKGNHTRNFSNLRELESL------EGHYWD-EESSRGYIAPYNAQVNLAEKVLPAD  648

Query  656  FVKDTVHKFQGRECDEVVFSTVLDKKRYNQMRERLDFVDNPNMINVAVSRAKHRFTLVTG  715
            FVK TVHKFQGRECDE+VFSTVLDKKR +Q    + FVDNP+++NVAVSRA+++FTLVTG
Sbjct  649  FVKSTVHKFQGRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTG  708

Query  716  DDVFNGNNGHVAALMRYMTYYAQDEHIVRAPVVSAFDLLYREYDQSLARLNARLRSDDSR  775
            +DVF+ + GH+AAL+RY+ YYA+D +I  +PV+SAFDLLY EYD+SL RLN+RL S+DS+
Sbjct  709  NDVFERHAGHIAALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSH  768

Query  776  YKSEQIAAQLLREALSDRSCQALMYHGQVKLDQVASSSNPNLTQRERVFM-ARASCDFVI  834
            +KSEQI A LLR+ LS+ S +++M+H+Q+ L+Q+      ++T+RE++FM  RASCDFV+
Sbjct  769  FKSEQIVACLLRDILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVV  828

Query  835  YFRVGKTPLGVIEVDGGSHDRPDQVARDALKNSILAKSGIPILRLRTVESCIEERITEFI  894
            Y++VGKTPLGVIEVDGG H  + Q  RD LKNSIL K G+P+LRLRT++S IE ++  F+
Sbjct  829  YYKVGKTPLGVIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFL  888

Query  895  A  895
            +
Sbjct  889  S  889

16) Pmen_1133 in NC_009439


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score =  808 bits (3057),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 477/899 (54%), Positives = 688/899 (77%), Gaps = 14/899 (1%)

Query  1    MVAIYVDGQDKTKQISDWRIWWDEKAEVLKLTCHYPSTKKYTRPLSVCRVEPTRELRNVL  60
            MV+I VDG++KT +I+DW +W ++    + LTCH+ S KKYTRPLSVC++ PT +LRNV+
Sbjct  1    MVTICVDGENKTHKITDWTLWAGNDDGEVMLTCHFRSGKKYTRPLSVCQITPTVNLRNVF  60

Query  61   LEKQDSIVSTTVERVEIYGERYAVVYYSKDARRPYVRNLDGIRFVSPTGIKDEPVFGYFQ  120
            LE+++  V++  ERV IYG++YA VYY +++ RPY+ +  G+ F   +++ +++VF Y+ 
Sbjct  61   LERKGDAVTSRAERVIIYGDKYAAVYY-REGERPYIMKTTGLDFQQCSAFTEHAVFNYLC  119

Query  121  AVANAWVDTAKTADDKQIAANVVKQLKELPVLSSSALQAYCSGSNEARLPGEGLIYPFGI  180
             VAN ++  A+ +++++I  N+++Q+K +   + +AL+AYCSG +  R +  GLI+PFG+
Sbjct  120  RVANERIFYAR-GNNRNIDENILRQIKKIVPHPDAALHAYCSGQSKKRDSPWGLIFPFGL  178

Query  181  NESQLMAVEQAFSAQISLIEGPPGTGKTQTILNILANILLRGQTVAVLSNNNAAVENVYE  240
            NESQL+AVE+AFS+QIS+IEGPPGTGKTQTILNI+ANIL++ +TVA+LSNNN+AV NVYE
Sbjct  179  NESQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYE  238

Query  241  KLGKSGLDYLVAKLGNRDNREDFFAQVQpvpsgepepappmeeIQAVLERLKRLLHEHNL  300
            K++K  L+Y+VA+LG+ +NR++FF+   + +      +P+ + I+ VL+++K+ L+  N 
Sbjct  239  KMDKQQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQ  298

Query  301  AAQLKAEIDELNIERRYLEQWQKDNGAQPTASLARYRLSPRETTDLMAYLAHLTGQRLRL  360
             A LKAEI+ELNIE +YL+QWQ +N         +YR+S++ TTDLMAY+  L+++R+ +
Sbjct  299  VASLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGF  358

Query  361  KDRFELLFKFRIFRAKPLADEEARLSFFDALQSHFYDELLRKKEDDLRTCNEALARGDFS  420
            ++R++LL++FRI++ KPL   E RL++F +LQ  +Y+  +R K+  L   +  L ++DF 
Sbjct  359  RNRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFK  418

Query  421  ALLEELMLGSMRMLKHRLHEQIRDSHSFDAKTYRKHFDAFVKRFPILGSSTHSIVNSIAP  480
             LL  L   SM  LK++L+ ++    SF A TYR +FD F+KRFP++GSSTHSI+NSI+ 
Sbjct  419  ILLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGK  478

Query  481  GAVLDYVIIDEASQQDIVPGILALGCAKNLIVVGDNKQLAHIPAATGLAAPLEP--YDCE  538
            GA+LDYVIIDEASQQDIVPGIL+LGCA+N+IVVGD KQL+H+P     ++P  +  Y+CE
Sbjct  479  GALLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCE  538

Query  539  RYSLLDS-CMQVFGDAMPKTLLKEHYRCHPRIIQFCNQQFYADALVPMTEDNGEAPLRLV  597
            +YSLLDS CM +F + +P TLLKEHYRCHP+IIQFCN+ FY +AL+P+T D+GEA+L LV
Sbjct  539  KYSLLDSVCM-LFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLV  597

Query  598  VTAKGNHARKNINLREVESLLKVLEGDGEGAWVDGDGRGLIAPFRAQATLSKAHLPDDFV  657
            +TAKGNH+R+  NLRE+ES    LEG+    W +  +RG IAP+ AQ  L+   LP DFV
Sbjct  598  ITAKGNHTRNFSNLRELES----LEGH---YWDEESSRGYIAPYNAQVNLAEKVLPADFV  650

Query  658  TDTVHKFQGRECDEIVFSTVLDKKQYNQSQGRLSFVDDPRMVNVAVSRAKHRFTLVTGDE  717
              TVHKFQGRECDEIVFSTVLDKK+ +Q    ++FVD+P +VNVAVSRA+++FTLVTG++
Sbjct  651  KSTVHKFQGRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGND  710

Query  718  VFARNNGPVAALIRYIEYYAEDKEIQRAPVVSAFDLLYKEYDKSLERLRNRLRKEDSRFV  777
            VF R+ G +AALIRYI YYA+D EI  +PV+SAFDLLY EYDKSLERL +RL  +DS+F 
Sbjct  711  VFERHAGHIAALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFK  770

Query  778  SEQIMAQILREAFADDALQALKWHKEVALNKIAVAENPQLTDHERQFMR-RSSCDFVIYF  836
            SEQI+A +LR+ +++D+ +++  H ++ALN++ + E  ++T++E+ FMR R+SCDFV+Y+
Sbjct  771  SEQIVACLLRDILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYY  830

Query  837  RVGKRPVGVIEVDGGSHDKPDQIVRDNLKNSILKKSGIDVLRVRTVDSGIEETVRDFLA  895
            +VGK P+GVIEVDGG H  + Q  RD+LKNSILKK G+ +LR+RT+DS+IE  +  FL+
Sbjct  831  KVGKTPLGVIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLS  889

17) PSPPH_1335 in NC_005773


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score =  793 bits (3001),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/897 (57%), Positives = 695/897 (78%), Gaps = 16/897 (1%)

Query  37   MVSIYVCGEDKTRQISGWDI-KPDGKGDFTLTCHYPSQKTYSRPLSECRVVPTLELKDML  95
            MV+I V GE+KT++I++W +   ++ G+  LTCH+ S K Y+RPLS C++ PT++L++++
Sbjct  1    MVTICVDGENKTHKITDWTLWAGNDDGEVMLTCHFRSGKKYTRPLSVCQITPTVNLRNVF  60

Query  96   LLRKGSSEFNPVDRVEIYGDKHALVQYPGKPKKYIFNMDSVEFFSPTSITDEPAFTYFrs  155
            L RKG +  +  +RV IYGDK A V Y    + YI +  +++F   +++T+++ F Y+  
Sbjct  61   LERKGDAVTSRAERVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR  120

Query  156  vaearvsaaaaGDKKGMVENIDRQMGGLSLSPATALHAYCKGQHGKLESSGNFIFPFGLN  215
            VA+ R+  A  G+++ + ENI RQ+  +   P +ALHAYC GQ  K +S+  +IFPFGLN
Sbjct  121  VANERIFYAR-GNNRNIDENILRQIKKIVPHPDAALHAYCSGQSKKRDSPWGLIFPFGLN  179

Query  216  ESQLRAVEQAFLSQVSVIEGPPGTGKTQTILNIIANILLQGKTvavvsnnnsavenvYEK  275
            ESQL AVE+AF SQ+SVIEGPPGTGKTQTILNI+ANIL+Q KTVA++SNNNSAV NVYEK
Sbjct  180  ESQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEK  239

Query  276  LGKCGLDYLVARLGKNDNQKEFFANPPSRPSTDPSPAPAIEHIQAVLQQLKGYLGARNAV  335
            ++K  L+Y+VARLG  +N+++FF+ + SR+    + +P+ + I+ VLQQ+K  L A N V
Sbjct  240  MDKQQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQV  299

Query  336  AqlqieiseleieRRYLTEWQRDNGVAGPSL-DRYKLSPQKTTDLMAYLEQLASERIRIK  394
            A L+ EI+EL+IE +YL +WQ +N  +   + ++Y++S+QKTTDLMAY++ L+  RI ++
Sbjct  300  ASLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFR  359

Query  395  DRIELLFNFRILRTRPFDNWDKRMSAFYSLQLHYYDKVLQDKKTELAAHEEALRLGNFKA  454
            +RI+LL+NFRIL+ +P+   ++R++ F SLQL YY+K +++K+  L   E  L+ ++FK 
Sbjct  360  NRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFKI  419

Query  455  LLEELTTSSMLHLKHHLHRHISDDDTFDT-TYRKRLDAFLKRYPVIGSSTHSIVNSLGGK  513
            LL  LT+ SML LK+HL+R++S   +F + TYR  +D F+KR+PVIGSSTHSI+NS+G  
Sbjct  420  LLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGKG  479

Query  514  AVLDYVIIDEASQQDIVPGVLALSCAKNLIIVGDRKQLAHIPEKLGLEAP--APWYDCEK  571
            A+LDYVIIDEASQQDIVPG+L+L+CA+N+I+VGDRKQL+H+P  L   +P  A  Y+CEK
Sbjct  480  ALLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCEK  539

Query  572  YSLLDSCVSVFGNSIPMTLLKEHYRCHPRIIQFCNQQFYDNQLVPMTMDNGEKPLTLLVT  631
            YSLLDS   +F N +P+TLLKEHYRCHP+IIQFCN+ FYDN L+P+T+D+GE +L+L++T
Sbjct  540  YSLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLVIT  599

Query  632  AKGNHTRNNSNLRELDSLLAVLEADGESLWEGEDGRGFIAPFKNQAMLSGSCLPADFVKA  691
            AKGNHTRN SNLREL+SL           W+ E +RG+IAP++ Q  L+   LPADFVK+
Sbjct  600  AKGNHTRNFSNLRELESL-------EGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKS  652

Query  692  TVHKFQGRECDEIVFSTVLDKYKSPER---LNFVDDARMVNVAVSRAKSRFTLVTGDNVF  748
            TVHKFQGRECDEIVFSTVLDK +S+++   + FVD++ +VNVAVSRA+++FTLVTG++VF
Sbjct  653  TVHKFQGRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVF  712

Query  749  KTSNGHIAALIRYMEYYADDGQVHRAPVISAFDLLYKEYERSLERLNKRLNPNDSLFKSE  808
                GHIAALIRY+ YYADDG++  +PVISAFDLLY EY++SLERLN RLN+NDS FKSE
Sbjct  713  ERHAGHIAALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSE  772

Query  809  QIVAQILREALAQEPRRGIMFHREIRLMQLAAVARASFTERELEFMRNAARCDFVLYFKV  868
            QIVA +LR+ L+Q++ R++MFH +I L QL  + R+ FT+RE  FMRN A CDFV+Y+KV
Sbjct  773  QIVACLLRDILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKV  832

Query  869  GKTPLGVIEVDGGYHDDPLQIERDAVKNSILNKCGIPLLRLRTIESRIEEKVAAFLD  925
            GKTPLGVIEVDGGYH  ++Q ERD +KNSIL+KCG+PLLRLRTI+S IE K++AFL 
Sbjct  833  GKTPLGVIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLS  889

18) mma_2031 in NC_009659


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score =  779 bits (2949),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 467/818 (58%), Positives = 641/818 (79%), Gaps = 10/818 (1%)

Query  2    AENMPSSSFAGGAQTYVKDVSSIAFSSETTIKDGEVFRYFRLVANARVKQASQQDKPIAE  61
            +++ ++  +  G + Y+   +++ F   +++ +  VF Y+  VAN R+  A  +++ I E
Sbjct  79   GDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCRVANERIFYARGNNRNIDE  138

Query  62   NVQRQMEKLLPHEDTVLHAYCTGQNRSRQPAGNFIYPFGINASQLKAVERAFTSQISVIE  121
            N+ RQ+ K++PH D+ LHAYC+GQ++ R+++  +I+PFG+N SQL AVERAF+SQISVIE
Sbjct  139  NILRQIKKIVPHPDAALHAYCSGQSKKRDSPWGLIFPFGLNESQLLAVERAFSSQISVIE  198

Query  122  GPPGTGKTQTILNIIANIVLRGKSVAILSNNNTAVKNVYEKLDKAGLDYVVAKLGNKENQ  181
            GPPGTGKTQTILNI+ANI+++ K+VAILSNNN+AV NVYEK+DK  L+YVVA+LG+ EN+
Sbjct  199  GPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKMDKQQLGYVVARLGSTENR  258

Query  182  ASFFDHLPAVPSNAATSALAMGQIQAVLQQLKQFLHAQNAVAQLQAEIDELSIEQRYLLE  241
              FF    + + +    + +   I+ VLQQ+K+ L+A N VA L+AEI+EL+IE +YL +
Sbjct  259  QQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVASLKAEINELNIEYKYLQQ  318

Query  242  WQRENQVSVAASLDKYKLSPSKSADLMAYLAHLAEKRIKFKDRIALLLNFKIWRTKPFDD  301
            WQ +N  +     +KY++S+ K++DLMAY+  L+++RI F++RI LLLNF+I + KP+  
Sbjct  319  WQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNFRILKVKPLMI  378

Query  302  WELRKSVIYALQLHYYEKTLQDKKTALTAHQEALRRGNFQALLDDLTGKSMAHLKYYLHQ  361
             E R +++ +LQL YYEK++++K+ +L   +  L++++F+ LL+ LT+ SM  LK  L++
Sbjct  379  PERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFKILLGRLTSWSMLYLKQHLRR  438

Query  362  HVRDQTTFDSATYRKNFDTFVKRFPIIGSSTHSIVNSIGDGVILDYVIIDEASQQDVVPG  421
            +V  +++F + TYR +FD F+KRFP+IGSSTHSI+NSIG G +LDYVIIDEASQQD+VPG
Sbjct  439  NVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGKGALLDYVIIDEASQQDIVPG  498

Query  422  ILALGCARNLIIVGDRKQLPHIPMNLGIAAPTNA-FYDCEQYSLLDSCVGIFKDTIPITL  480
            IL+LGCARN+I+VGDRKQLPH+P+ L  ++P  A +Y+CE+YSLLDS   +F++ +P+TL
Sbjct  499  ILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCEKYSLLDSVCMLFRNMVPVTL  558

Query  481  LKEHYRCHPRIIQFCNQQFYDNQLIPMTRDVGEKSLKLLVTAKGNHTRNNANLRELDSLL  540
            LKEHYRCHP+IIQFCN+ FYDN LIP+T D GE SL L++TAKGNHTRN +NLREL+SL 
Sbjct  559  LKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLVITAKGNHTRNFSNLRELESL-  617

Query  541  ATLKWDGKTEWDGENSRGVIAPYNAQVHLSRTHLPADFVNDTVHKFQGRECDEIVFSTVL  600
                 +G   WD E+SRG IAPYNAQV+L+   LPADFV+ TVHKFQGRECDEIVFSTVL
Sbjct  618  -----EGHY-WDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGRECDEIVFSTVL  671

Query  601  DKKYSSQ--RNLGFVDNPHLVNVAVSRAKNLFTLVTGDDVFSGNNGDIAALLRYIEYYAD  658
            DKK SSQ  RN++FVDNP+LVNVAVSRA+N FTLVTG+DVF  + G+IAAL+RYI YYAD
Sbjct  672  DKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIAALIRYIKYYAD  731

Query  659  EKQIHRAPVVSAFDLLYKEYDQSLDRLNARLLPGDSLYKSEQIVAQILREALSQDAYQAI  718
            + +I  +PV+SAFDLLY EYD+SL+RLN+RL + DS +KSEQIVA +LR+ LSQD+Y+++
Sbjct  732  DGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLRDILSQDSYRSM  791

Query  719  KFHSQILLIQLASSRNETLTPREREFMKNRASCDFVLYFKVGKTPLGVIEVDGSSHAEPL  778
             FHSQI L QL       +T RE+ FM+NRASCDFV+Y+KVGKTPLGVIEVDG+ H  ++
Sbjct  792  MFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHLTSV  851

Query  779  QVERDAVKESILNKSGISLLRLRTVESDIETKIEKFLS  816
            Q ERD +K+SIL+K G++LLRLRT++SDIE K+  FLS
Sbjct  852  QAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLS  889

19) K734_08115 in NC_021286


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score =  777 bits (2939),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 463/899 (52%), Positives = 689/899 (77%), Gaps = 11/899 (1%)

Query  1    MFSLIVNGQDKTRQIADWKIFKGSE-GQFVLKCIFRSDKAFFRSLEECEITPTEEVKDKL  59
            M ++ V+G++KT++I+DW +  G++ G+ +L C FRS+K + R+L  C+ITPT ++++ +
Sbjct  1    MVTICVDGENKTHKITDWTLWAGNDDGEVMLTCHFRSGKKYTRPLSVCQITPTVNLRNVF  60

Query  60   LITKNGSKVSTIESALIYANKYAIVHYPGSSEPYLMKMDAIEFTDTANIKNGTVFNYFTS  119
            L  K ++  S  E  +IY++KYA V Y  +  PY+MK  +++F + + + + +VFNY+  
Sbjct  61   LERKGDAVTSRAERVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR  120

Query  120  VTNARMNLAPSGEERDIAENIAKQLEKIEPYPETALFSYCTGKSQQRAKPNGLVYPFGIN  179
            V+N R+ + + G++R+I ENI +Q+ KI P P++AL +YC+G+S++R  P GL++PFG+N
Sbjct  121  VANERI-FYARGNNRNIDENILRQIKKIVPHPDAALHAYCSGQSKKRDSPWGLIFPFGLN  179

Query  180  LsqqqavqqafcsqvsIIEGPPGTGKTQTILNILANIALRGEKAAILSNNNPAVENVYEK  239
             SQ  AV++AF SQ+S+IEGPPGTGKTQTILNI+ANI ++    AILSNNN+AV NVYEK
Sbjct  180  ESQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEK  239

Query  240  LEKSSLGYLAAKLGSVQNRKDFFASLPMKPKEKPNQAKPLEDITSQIQRLEQLLSAQNEA  299
            ++K  LGY+ A+LGS +NR++FF++   ++ E   ++ + + I   +Q++ + L+A N+ 
Sbjct  240  MDKQQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQV  299

Query  300  SKLRSQISELKIERKRLLGWQDKSIHKPIMQPNKYKLSPQKITDFIAYLTDISEKRITLW  359
            + L+++I+EL+IE K L  WQ ++++   + ++KY++S+QK TD++AY+  +S++RI ++
Sbjct  300  ASLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFR  359

Query  360  NRLELWLHFRILRTKLFNTWEKRKSVIHalqllyydyalqEKTAALKTQEEILEQSNFKV  419
            NR++L L+FRIL+ K +   E+R +++ +LQL YY+ A++EK  +L+  E +L +S+FK+
Sbjct  360  NRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFKI  419

Query  420  LLETVTNSSMAYLKSSLFDQVSSHEDFDSENYRQNFHQFLQRFPIMGSSTHSIINSLDQG  479
            LL  +T+ SM YLK  L  +VS++  F +E YR++F++F++RFP++GSSTHSIINS+++G
Sbjct  420  LLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGKG  479

Query  480  TILDFAIIDEASQQDIIPGILALGCARNVIIVGDRKQLPH--IPNQTGILPPSDMYDCEK  537
            ++LD+ IIDEASQQDI+PGIL+LGCARNVI+VGDRKQLPH  +   ++  PP++ Y+CEK
Sbjct  480  ALLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCEK  539

Query  538  HSLLESFTRVFSGSIPITLLKEHYRCHPKIIQFCNQQFYNNELIPMRDDTAKNPLELIVT  597
             SLL+S   +F   +P+TLLKEHYRCHPKIIQFCN+ FY+N LIP+  D++  +L L++T
Sbjct  540  YSLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLVIT  599

Query  598  AKGNHARGYSNKRELESLIKVQTENEGAGWDERNSKGFIAPYNAQVNLSRSHLPTDFVRK  657
            AKGNH+R +SN RELESL       EG  WDE +S+G+IAPYNAQVNL+   LP+DFV+ 
Sbjct  600  AKGNHTRNFSNLRELESL-------EGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKS  652

Query  658  TTHKFQGRECDEIVFSTVLDKKLSNQSERKITFVDNPNLVNVAVSRAKEKFTLVTGDNVF  717
            T HKFQGRECDEIVFSTVLDKK S+Q  R+I+FVDNP+LVNVAVSRA++KFTLVTG++VF
Sbjct  653  TVHKFQGRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVF  712

Query  718  TAGNSSIAALVRYMEYYGDQSSIYHAPVISSFDLLYDEYDRSLEKLRTKLRPEDSQYKSE  777
                + IAAL+RY+ YY+D++ I+++PVIS+FDLLY EYD+SLE+L ++L ++DS++KSE
Sbjct  713  ERHAGHIAALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSE  772

Query  778  QIVAQELRQLLSDEKYREFTFHAEVALIQLVSPNLEDLTQAELTFMRNLSRCDFVFYYRV  837
            QIVA  LR++LS++ YR   FH+++AL QLV  +  D+T+ E  FMRN + CDFV YY+V
Sbjct  773  QIVACLLRDILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKV  832

Query  838  GKQPLAVIEVDGGHHNTPEQKRRDALKNSILEKAGLPLLRLNTDEAHVSRNISSFLDTL  896
            GK PL+VIEVDGG H T+ Q  RD LKNSIL K GLPLLRL T ++++  ++++FL  L
Sbjct  833  GKTPLGVIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGL  891

20) IL1613 in NC_006512


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score =  777 bits (2939),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 463/899 (52%), Positives = 689/899 (77%), Gaps = 11/899 (1%)

Query  1    MFSLIVNGQDKTRQIADWKIFKGSE-GQFVLKCIFRSDKAFFRSLEECEITPTEEVKDKL  59
            M ++ V+G++KT++I+DW +  G++ G+ +L C FRS+K + R+L  C+ITPT ++++ +
Sbjct  1    MVTICVDGENKTHKITDWTLWAGNDDGEVMLTCHFRSGKKYTRPLSVCQITPTVNLRNVF  60

Query  60   LITKNGSKVSTIESALIYANKYAIVHYPGSSEPYLMKMDAIEFTDTANIKNGTVFNYFTS  119
            L  K ++  S  E  +IY++KYA V Y  +  PY+MK  +++F + + + + +VFNY+  
Sbjct  61   LERKGDAVTSRAERVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR  120

Query  120  VTNARMNLAPSGEERDIAENIAKQLEKIEPYPETALFSYCTGKSQQRAKPNGLVYPFGIN  179
            V+N R+ + + G++R+I ENI +Q+ KI P P++AL +YC+G+S++R  P GL++PFG+N
Sbjct  121  VANERI-FYARGNNRNIDENILRQIKKIVPHPDAALHAYCSGQSKKRDSPWGLIFPFGLN  179

Query  180  LsqqqavqqafcsqvsIIEGPPGTGKTQTILNILANIALRGEKAAILSNNNPAVENVYEK  239
             SQ  AV++AF SQ+S+IEGPPGTGKTQTILNI+ANI ++    AILSNNN+AV NVYEK
Sbjct  180  ESQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEK  239

Query  240  LEKSSLGYLAAKLGSVQNRKDFFASLPMKPKEKPNQAKPLEDITSQIQRLEQLLSAQNEA  299
            ++K  LGY+ A+LGS +NR++FF++   ++ E   ++ + + I   +Q++ + L+A N+ 
Sbjct  240  MDKQQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQV  299

Query  300  SKLRSQISELKIERKRLLGWQDKSIHKPIMQPNKYKLSPQKITDFIAYLTDISEKRITLW  359
            + L+++I+EL+IE K L  WQ ++++   + ++KY++S+QK TD++AY+  +S++RI ++
Sbjct  300  ASLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFR  359

Query  360  NRLELWLHFRILRTKLFNTWEKRKSVIHalqllyydyalqEKTAALKTQEEILEQSNFKV  419
            NR++L L+FRIL+ K +   E+R +++ +LQL YY+ A++EK  +L+  E +L +S+FK+
Sbjct  360  NRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFKI  419

Query  420  LLETVTNSSMAYLKSSLFDQVSSHEDFDSENYRQNFHQFLQRFPIMGSSTHSIINSLDQG  479
            LL  +T+ SM YLK  L  +VS++  F +E YR++F++F++RFP++GSSTHSIINS+++G
Sbjct  420  LLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGKG  479

Query  480  TILDFAIIDEASQQDIIPGILALGCARNVIIVGDRKQLPH--IPNQTGILPPSDMYDCEK  537
            ++LD+ IIDEASQQDI+PGIL+LGCARNVI+VGDRKQLPH  +   ++  PP++ Y+CEK
Sbjct  480  ALLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCEK  539

Query  538  HSLLESFTRVFSGSIPITLLKEHYRCHPKIIQFCNQQFYNNELIPMRDDTAKNPLELIVT  597
             SLL+S   +F   +P+TLLKEHYRCHPKIIQFCN+ FY+N LIP+  D++  +L L++T
Sbjct  540  YSLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLVIT  599

Query  598  AKGNHARGYSNKRELESLIKVQTENEGAGWDERNSKGFIAPYNAQVNLSRSHLPTDFVRK  657
            AKGNH+R +SN RELESL       EG  WDE +S+G+IAPYNAQVNL+   LP+DFV+ 
Sbjct  600  AKGNHTRNFSNLRELESL-------EGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKS  652

Query  658  TTHKFQGRECDEIVFSTVLDKKLSNQSERKITFVDNPNLVNVAVSRAKEKFTLVTGDNVF  717
            T HKFQGRECDEIVFSTVLDKK S+Q  R+I+FVDNP+LVNVAVSRA++KFTLVTG++VF
Sbjct  653  TVHKFQGRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVF  712

Query  718  TAGNSSIAALVRYMEYYGDQSSIYHAPVISSFDLLYDEYDRSLEKLRTKLRPEDSQYKSE  777
                + IAAL+RY+ YY+D++ I+++PVIS+FDLLY EYD+SLE+L ++L ++DS++KSE
Sbjct  713  ERHAGHIAALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSE  772

Query  778  QIVAQELRQLLSDEKYREFTFHAEVALIQLVSPNLEDLTQAELTFMRNLSRCDFVFYYRV  837
            QIVA  LR++LS++ YR   FH+++AL QLV  +  D+T+ E  FMRN + CDFV YY+V
Sbjct  773  QIVACLLRDILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKV  832

Query  838  GKQPLAVIEVDGGHHNTPEQKRRDALKNSILEKAGLPLLRLNTDEAHVSRNISSFLDTL  896
            GK PL+VIEVDGG H T+ Q  RD LKNSIL K GLPLLRL T ++++  ++++FL  L
Sbjct  833  GKTPLGVIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLSGL  891

21) EHR_01785 in NC_018081


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score =  773 bits (2925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 484/889 (55%), Positives = 679/889 (77%), Gaps = 10/889 (1%)

Query  1    MFSISMNGQDKTNQIIDWKLW--EKDNKLMVTVYFPSGKSFWKPLDLCKITPQKEIHAGL  58
            M +I ++G++KT++I DW LW  + D  +M+T  F SGK + +PL +C+ITP  +++  +
Sbjct  1    MVTICVDGENKTHKITDWTLWAGNDDGEVMLTCHFRSGKKYTRPLSVCQITPTVNLRNVF  60

Query  59   LS-KEENVYQQIDKATEYGNKYIVVNYPNDQKKYVMKSEKVSIISSSDLKNEDIFSYFTE  117
            L  K + V  + ++   YG+KY  V Y ++++ Y+MK+  + +   S + ++ +F+Y+  
Sbjct  61   LERKGDAVTSRAERVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR  120

Query  118  IVKERVRNASPENKTMTKNIERQLEKITPYKGTALHSYCYGKNEARNSLKHLIFPFGLNE  177
            + +ER+  A  +N+ +  NI RQ+ KI P  ++ALH+YC G++  R+S   LIFPFGLNE
Sbjct  121  VANERIFYARGNNRNIDENILRQIKKIVPHPDAALHAYCSGQSKKRDSPWGLIFPFGLNE  180

Query  178  SQLKAVENAFSSQISIIEGPPGTGKTQTilniianilinKKSVAIVSNNNPAVENVYEKM  237
            SQL AVE AFSSQIS+IEGPPGTGKTQTILNI+ANILI++K+VAI+SNNN+AV NVYEKM
Sbjct  181  SQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKM  240

Query  238  AKKELDYLIAKLGCSTNRTEFFAGVKEVPRYNSNSAATP-IKEIDDILAKVKASLATQNK  296
             K++L+Y++A+LG + NR +FF+    ++R +   + +P  + IDD+L +VK  L + N+
Sbjct  241  DKQQLGYVVARLGSTENRQQFFST--SISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQ  298

Query  297  VAQLTAEISELLVEKKYLEEWHEENTLVELMDVERYKLSPEKTSDLLAYMNYLSQIKFSF  356
            VA L AEI+EL +E KYL++W+ +N   E +  ++Y++S++KT+DL+AY++YLS+ +++F
Sbjct  299  VASLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGF  358

Query  357  KErfrlllgfrifrTKFLNTYTERINFIYSLQFHyyektlqqkeqqlqkykNDLNRDNFE  416
            ++R+ LLL FRI++ K L     R+ ++ SLQ+ YYEK++++K+  L+ Y   L++ +F 
Sbjct  359  RNRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFK  418

Query  417  KLLEELTNKSMQFLKQQLSKSIPSNSNFTADSYKKEFSNFIKRFPVIGSSAHSIINSIAE  476
             LL  LT+ SM +LKQ+L +++++ S+F+A++Y+ EF +FIKRFPVIGSS+HSIINSI+ 
Sbjct  419  ILLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGK  478

Query  477  GAILDYIIIDEASQQDIVPGILSLGCAKNIIVVGDRKQLPHIPEKTEIKAPSND--YECT  534
            GA+LDY+IIDEASQQDIVPGIL+LGCA+N+IVVGDRKQLPH+P      +P+    Y+C 
Sbjct  479  GALLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCE  538

Query  535  KYSLLDSFINVFKEKVPITLLKEHYRCHPKIIQFCNQQFYNNQLIPMTIDEGEASIELII  594
            KYSLLDS   +F++ VP+TLLKEHYRCHPKIIQFCN+ FY+N LIP+T+D GEAS+ L+I
Sbjct  539  KYSLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLVI  598

Query  595  TSKGNHTRKRANLREIESLVEVGWSDEKDIGFIAPYNNQVNLAGKYLPEEFARATIHKFQ  654
            T+KGNHTR+ +NLRE+ESL    W +E   G+IAPYN QVNLA K LP +F ++T+HKFQ
Sbjct  599  TAKGNHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQ  658

Query  655  GRECKEIIFSTVLDKKKSSQAS--IDFVDNPHLVNVAVSRAINKFTLVTGNQVFTKNNKS  712
            GREC EI+FSTVLDKK+SSQ S  I FVDNP+LVNVAVSRA NKFTLVTGN+VF ++   
Sbjct  659  GRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGH  718

Query  713  LAALVRYIKYYASDQYIYDSPVISAFDLLYKEYDRSLEKLNTQLNLKDSYFKSERIMAAL  772
            +AAL+RYIKYYA D  I++SPVISAFDLLY EYD+SLE+LN++LN +DS FKSE+I+A L
Sbjct  719  IAALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACL  778

Query  773  LRDILRTDEFASLTFHMQINLIQLVSIKNNSFTDREIEFMKQKSSCDFVIYYKIGKIPIG  832
            LRDIL  D + S+ FH QI L QLV +    FT+RE  FM++++SCDFV+YYK+GK P+G
Sbjct  779  LRDILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLG  838

Query  833  VIEVDGSSHDDKVQQERDRLKNIILEKAEIPLLRLKTTEGNIERKTKSF  881
            VIEVDG+ H   VQ ERD LKN IL K  +PLLRL+T +++IE K  +F
Sbjct  839  VIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAF  887

22) Csal_0774 in NC_007963


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score =  763 bits (2888),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 461/899 (52%), Positives = 672/899 (75%), Gaps = 14/899 (1%)

Query  1    MVSIQVGGEDRTAEITNWSIWSDKQEG-LQLKCSYVNKGKAVHALDDCVISPIRELGEML  59
            MV+I V+GE++T  IT+W++W+++++G + L C + +  K  ++L  C I+P  +L +++
Sbjct  1    MVTICVDGENKTHKITDWTLWAGNDDGEVMLTCHFRSGKKYTRPLSVCQITPTVNLRNVF  60

Query  60   MTKPHSTIVTPIAKATIYGERYAVVHYPDADKPYVYKMDDIDFDASTAMKGTPVFRYFEA  119
            + +   ++ +   +  IYG++YA V Y ++++PY+ K  ++DF+  +A    +VF Y+  
Sbjct  61   LERKGDAVTSRAERVIIYGDKYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCR  120

Query  120  VANARKDRAKSKTDHEIAANVVRQLEKLPASNDTALQAYCTGCNGALAMGQGLIYPFGLN  179
            VAN R   A+++ +++I  N++RQ+ K+ +  D+AL+AYC+G +       GLI+PFGLN
Sbjct  121  VANERIFYARGN-NRNIDENILRQIKKIVPHPDAALHAYCSGQSKKRDSPWGLIFPFGLN  179

Query  180  ASQLAAVEQAFRAQVSVIEGPPGTGKTQTILNILANILLRGQIVAVLSNNNAAVENVYEK  239
             SQL AVE+AF +Q+SVIEGPPGTGKTQTILNI+ANIL++ + VA+LSNNN+AV NVYEK
Sbjct  180  ESQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEK  239

Query  240  LEKCGLGHLIAKLGNQSNRQDFFADLppwpssepepapTLEEIQALLGRLKKLLHDQNRM  299
            ++K  LG ++A+LG+  NRQ+FF+   +++      +P+ + I+ +L ++KK L+  N++
Sbjct  240  MDKQQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQV  299

Query  300  AQLRVEIDELIVERRYLQQWQADSGVQAAASLDKYGLTPRKTADLMAYLAHLGEQRTRLK  359
            A L+ EI+EL +E +YLQQWQ+++        +KY ++++KT+DLMAY+  L+++R  ++
Sbjct  300  ASLKAEINELNIEYKYLQQWQSQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFR  359

Query  360  DRIELLFNFRIFRAKPFAQGDTRLAVFHALQMHYYDKALQEKEAELQTCRESLARENFEA  419
            +RI+LL+NFRI++ KP+   + RLA+F +LQ+ YY+KA++EK+  L+     L + +F  
Sbjct  360  NRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYYEKAIREKQISLNEYEGVLKKSDFKI  419

Query  420  SLEALKTASMRHLKQHLQRQTQPSESFDAKTYRRQQKFDAFVRRFPILGSGTHSIVNSIA  479
             L  L + SM  LKQHL+R+     SF A TYR  + FD F++RFP++GS+THSI+NSI+
Sbjct  420  LLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYR--DEFDHFIKRFPVIGSSTHSIINSIG  477

Query  480  PGAILDYVIIDEASLQDIVPGILALGCAKNLIVVGDNRQLAHIPVKLDLPAPIDA--YDC  537
             GA+LDYVIIDEAS QDIVPGIL+LGCA+N+IVVGD +QL+H+PV L  ++P  A  Y+C
Sbjct  478  KGALLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNC  537

Query  538  ERYSLLDSCIEVFKETLPKILLKEHYRCHPRIIQFCSQQFYDNALVPMTEDKGEAPLRLV  597
            E+YSLLDS   +F++ +P  LLKEHYRCHP+IIQFC++ FYDNAL+P+T D GEA+L LV
Sbjct  538  EKYSLLDSVCMLFRNMVPVTLLKEHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLV  597

Query  598  VTAKGNHTRQNTNlreldsllkllddegePVGLDGDGCGFIAPFRAQVNLSGTHLPADFV  657
            +TAKGNHTR+ +NLREL+SL     D       +  + G+IAP+ AQVNL+   LPADFV
Sbjct  598  ITAKGNHTRNFSNLRELESLEGHYWD-------EESSRGYIAPYNAQVNLAEKVLPADFV  650

Query  658  KDTVHKFQGRECDEIVFSTVLDKKRYNQERKRLDFVDDPRMINVAVSRAKHRFTLVTGDE  717
            K TVHKFQGRECDEIVFSTVLDKKR +Q+ + + FVD+P ++NVAVSRA+++FTLVTG++
Sbjct  651  KSTVHKFQGRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGND  710

Query  718  VFAGNNGHIAALMRYFAYYAQDEQIVRAPVVSAFDLLYREFDQSLARLNARLRPEDSRYR  777
            VF  + GHIAAL+RY+ YYA+D +I  +PV+SAFDLLY E+D+SL RLN+RL ++DS+++
Sbjct  711  VFERHAGHIAALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFK  770

Query  778  SEQIAAQLLREALSDPSCQALMCHDQVKLNQIASPSNPDLTQRERAFM-ARASCDFVIYF  836
            SEQI A LLR+ LS+ S +++M H Q+ LNQ+      D+T+RE+ FM  RASCDFV+Y+
Sbjct  771  SEQIVACLLRDILSQDSYRSMMFHSQIALNQLVLLERGDFTHREQLFMRNRASCDFVVYY  830

Query  837  KVGKTPLGVIEVDGGSHDRSDQAARDALKNSILEKSGILILRLRTVESCIEERIADFIS  895
            KVGKTPLGVIEVDGG H  S QA RD LKNSIL K G+ +LRLRT++S IE +++ F+S
Sbjct  831  KVGKTPLGVIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDIEGKLGAFLS  889

23) PSPTO_1455 in NC_004578


> AY275838|18|G18|33440452|AAQ19138.1|Escherichia_coli_CL3|+|22200..24881|S15|-|putative 
UvrD/REP helicase-like protein
Length=893

 Score =  681 bits (2575),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/750 (59%), Positives = 586/750 (79%), Gaps = 21/750 (2%)

Query  3    PATALNAYCKGQPVQQDSPGNFIFPFGLNESQLKAVEQAFSSQISLIEGPPGTGKTQTIL  62
            P +AL+AYC GQ+ ++DSP  +IFPFGLNESQL AVE+AFSSQIS+IEGPPGTGKTQTIL
Sbjct  151  PDAALHAYCSGQSKKRDSPWGLIFPFGLNESQLLAVERAFSSQISVIEGPPGTGKTQTIL  210

Query  63   NIIANILLQGKTvavvsnnnaavknvYEKLGKCGLDYLVARLGNKENRETFFAERSLRPS  122
            NI+ANIL+Q KTVA++SNNN+AV NVYEK++K  L+Y+VARLG+ ENR+ FF+    R+ 
Sbjct  211  NIVANILIQNKTVAILSNNNSAVSNVYEKMDKQQLGYVVARLGSTENRQQFFSTSISRSE  270

Query  123  -VDPESEPAPAMEDIQGVLQRLRRYLSARNAVAqlqieineleieRHYLVQWQQDNGIVP  181
             V P+S   P+ + I++VLQ++++ L+A N VA L+ EINEL+IE  YL QWQ +N + P
Sbjct  271  EVLPDS---PSANAIDDVLQQVKKHLNAINQVASLKAEINELNIEYKYLQQWQSQN-LRP  326

Query  182  VH---DRYKLSPQKTTDLMAYLPHIPSDRIRIKDRIELLFNFRILRTGKLNDRGKRMSAF  238
             +   ++Y++S+QKTTDLMAY+  ++  RI +++RI+LL+NFRIL+   L    +R++ F
Sbjct  327  EELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNFRILKVKPLMIPERRLALF  386

Query  239  YSLQLDYYDKVLQKKKRELSAHEEALRIGNFNALLEELTSSSMRHLKHHLDLHISPNDDF  298
             SLQL YY+K ++ K+  L+  E  L+ ++F+ LL  LTS SM  LK+HL  ++S    F
Sbjct  387  TSLQLSYYEKAIREKQISLNEYEGVLKKSDFKILLGRLTSWSMLYLKQHLRRNVSTRSSF  446

Query  299  DI-TYRNHLDAFLKRYPVIGSSTHSIVNSLGGKAVLDYVIIDEASQQDIVPGVLALSCAK  357
               TYR+++D F+KR+PVIGSSTHSI+NS+G  A+LDYVIIDEASQQDIVPG+L+L+CA+
Sbjct  447  SAETYRDEFDHFIKRFPVIGSSTHSIINSIGKGALLDYVIIDEASQQDIVPGILGLGCAR  506

Query  358  NLIIVGDRKQLAHIPEKLGLEAP--APWYDCETYSLLDSCVGVFGDSIPMTLLKEHYRCH  415
            N+I+VGDRKQL+H+P  L   +P  A  Y+CE YSLLDS   +F + +P+TLLKEHYRCH
Sbjct  507  NVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCEKYSLLDSVCMLFRNMVPVTLLKEHYRCH  566

Query  416  PRIIQFCNQQFYDNQLVPMTQDAGEQSLTLLVTAKGNHTRNNSNLRELDSLLAVLDGSGE  475
            P+IIQFCN+ FYDN L+P+T D+GE SL+L++TAKGNHTRN SNLREL+SL         
Sbjct  567  PKIIQFCNKLFYDNALIPLTVDSGEASLSLVITAKGNHTRNFSNLRELESL-------EG  619

Query  476  SIWEGEDGRGFIAPFKNQATLSGSCLPADFINDTVHKFQGRECDEIVFSTVLDKHKSPER  535
              W+ E +RG+IAP++ Q  L+   LPADF++ TVHKFQGRECDEIVFSTVLDK +S+++
Sbjct  620  HYWDEESSRGYIAPYNAQVNLAEKVLPADFVKSTVHKFQGRECDEIVFSTVLDKKRSSQH  679

Query  536  ---LSFVDDARMVNVAVSRAKNRFTLVTGDGVFKAGNGHIAALIRYMEYYAEDGHIHRAP  592
               ++FVD++ +VNVAVSRA+N+FTLVTG++VF    GHIAALIRY+ YYA+DG+I  +P
Sbjct  680  SRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIAALIRYIKYYADDGEIFESP  739

Query  593  VISAFDLLYKEYDRSQERLNKRLRPDDSPFKSEQIVAQILREALAQEARQSIMFHREVLL  652
            VISAFDLLY EYD+S ERLN RL ++DS FKSEQIVA +LR+ L+Q++ +S+MFH ++ L
Sbjct  740  VISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLRDILSQDSYRSMMFHSQIAL  799

Query  653  IQLASAAGASFTEREREFMNNGSCCDFVLYFKVGKRPLGVIEVDGGHHNDLVQIERDTVK  712
             QL     + FT+RE+ FM N + CDFV+Y+KVGK PLGVIEVDGG H   VQ ERD +K
Sbjct  800  NQLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHLTSVQAERDELK  859

Query  713  NSILEKCGIPLLRLRTIESHIEEKIAAFVD  742
            NSIL KCG+PLLRLRTI+S+IE K++AF+ 
Sbjct  860  NSILKKCGLPLLRLRTIDSDIEGKLGAFLS  889