Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of lscD gene of AY144116

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) sctD
( NP_930985.1 )

Type III secretion component protein SctD

NC_005126
(Photorhabdus luminescens TTO1)

1e-172

2) sctD
( YP_003039873.1 )

type iii secretion component protein sctd

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

5e-147

3) G655_16590
( YP_007710158.1 )

type III export protein PscD

NC_020912
(Pseudomonas aeruginosa B136-33)

1e-101

4) pscD
( YP_005980860.1 )

type III export protein

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

1e-101

5) pscD
( NP_250408.1 )

type III export protein PscD

NC_002516
(Pseudomonas aeruginosa PAO1)

2e-101

6) pscD
( YP_005975914.1 )

type III export protein PscD

NC_017548
(Pseudomonas aeruginosa M18)

4e-101

7) pscD
( YP_791528.1 )

type III export protein PscD

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

7e-101

8) PADK2_17110
( YP_006483403.1 )

type III export protein PscD

NC_018080
(Pseudomonas aeruginosa DK2)

9e-101

9) pscD
( YP_002441197.1 )

type III export protein PscD

NC_011770
(Pseudomonas aeruginosa LESB58)

1e-100

10) ascD
( YP_001144278.1 )

AscD protein

NC_009350
(Aeromonas salmonicida A449)

5e-95

11) YE105_P0035
( YP_004424937.1 )

Yop proteins translocation protein D

NC_015475
(Yersinia enterocolitica 105.5R(r))

7e-83

12) yscD
( YP_001004091.1 )

putative type III secretion protein

NC_008791
(Yersinia enterocolitica 8081)

7e-83

13) yscD
( NP_995358.1 )

putative type III secretion protein YscD

NC_005813
(Yersinia pestis 91001)

4e-82

14) yscD
( YP_001604486.1 )

type III secretion apparatus protein YscD

NC_010157
(Yersinia pestis Angola)

4e-82

15) YPA_CD0011
( YP_636803.1 )

type III secretion protein

NC_008122
(Yersinia pestis Antiqua)

4e-82

16) yscD
( NP_395187.1 )

virulence protein

NC_003131
(Yersinia pestis CO92)

4e-82

17) YPDSF_3966
( YP_001154595.1 )

type III secretion protein

NC_009377
(Yersinia pestis Pestoides F)

4e-82

18) pYV0080
( YP_068489.1 )

yscD; type III secretion protein

NC_006153
(Yersinia pseudotuberculosis IP 32953)

4e-82

19) YPTS_4209
( YP_001874609.1 )

YscD/HrpQ family type III secretion apparatus protein

NC_010635
(Yersinia pseudotuberculosis PB1/+)

4e-82

• Sequence Alignments

1) sctD in NC_005126


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  598 bits (2260),  Expect = 1e-172, Method: Compositional matrix adjust.
 Identities = 383/422 (91%), Positives = 406/422 (97%), Gaps = 1/422 (0%)

Query  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPVHLILEVEPDSIRLLE  60
            MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAP HLILEVEPDSIRLLE
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   WAGEAAPSQNGEPLSPGATLQALARQEVGPLLWAFCDQQHTFPSQLAEPVVTP-QRPARQ  119
            WAGE+APSQNGEPLSPGATLQALARQE GPLLWAFCDQQHTFP+QLAEP VTP Q+P RQ
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  120  NRSRVAggmlilclvlalgllallgHEGWQRNHMSNGIAEQELRRFLSSDSAYRQVSVQM  179
            NRSRVAGGMLILCLVLALGLL LLGHEGWQR+ MSNG+AEQELRRFL++DSAYR+VSVQM
Sbjct  121  NRSRVAGGMLILCLVLALGLLMLLGHEGWQRSSMSNGMAEQELRRFLNGDSAYRHVSVQM  180

Query  180  MPNHGPPLLKGYVALNHQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLGYAQIQ  239
            MPN+ P LLKGYV LN+QRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLGYAQ+Q
Sbjct  181  MPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLGYAQLQ  240

Query  240  SSDGKQPGWIRLIGEVTDTSQQWNNIESLLKRDVPGLLGIENQTRFTGNHLKRLDMLLAK  299
            S +GKQPGW+RL+GEVTDTSQQWN+IESLLKRDVPGLLGIENQT+FTGNH+KRLDMLLAK
Sbjct  241  SYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLDMLLAK  300

Query  300  HDLPDTLTYKDKNDRIEFIGQLDEHQTHNFYRLQQVFKQEFGNQPALVLLNNKQLTRNDE  359
            HDLP+TLTYKDKNDRIEF GQLDEHQ+HNF RLQQVFKQEFGN+PALVLLNNK+LTRNDE
Sbjct  301  HDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRLTRNDE  360

Query  360  LNFDVRAVSLGRVPYVVLKNNLRYPVGATTENGLIIEAIRQDAIVITKGKQQFIVKLNRS  419
            LNFDVRAVSLGR+PYVVLKNNLRYPVGATTENGL IEAIRQDAIVITKG QQFI+KLNRS
Sbjct  361  LNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFIIKLNRS  420

Query  420  PA  421
            P 
Sbjct  421  PV  422

2) sctD in NC_012962


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  513 bits (1936),  Expect = 5e-147, Method: Compositional matrix adjust.
 Identities = 356/424 (84%), Positives = 396/424 (94%), Gaps = 1/424 (0%)

Query  1    MSWKIRFYRGLNKSIEVNLAEGRLVIGSDPLQADIVLVDEGIAPVHLILEVEPDSVRLLE  60
            MSWKIRFYRGLNKSIEVNLAEGRL IGSDPLQADIVLVDE++AP HLILEVEPDS+RLLE
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   WAGETTPSQNGEPLSPNALLQALARQEAGPLLWAFCDQQHTFPDQLAEPVITPHQRPVRQ  120
            WAGET+PSQNGEPLSP A LQALARQEAGPLLWAFCDQQHTFP+QLAEP +TP+Q+PVRQ
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  121  NRNRIAGWMlilclvvalvflallGHEGWQRSNMSNGMAEQELRRFLNSNSAYHQVSVQM  180
            NR+R+AG MLILCLV+AL +L LLGHEGWQRS+MSNGMAEQELRRFLN++SAY++VSVQM
Sbjct  121  NRSRVAGGMLILCLVLALGLLMLLGHEGWQRSSMSNGMAEQELRRFLNGDSAYRHVSVQM  180

Query  181  MPNDEPLLIKGYVDRNHHRLALQQYLDTHPLNYRLELRTMEELLQGVDFILQKLGHTQVQ  240
            MPN+EPLL+KGYV+ N++RLALQQYLDTH+L+YRLELRTMEEL QGVDFILQKLG +Q+Q
Sbjct  181  MPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLGYAQLQ  240

Query  241  SGNGKQPGWIRLTGELTDSEQNWNDIESLLKRDVPGLLGIENQTMQTGGHLKRLDMLLAK  300
            S NGKQPGW+RL GE+TD+ Q+WNDIESLLKRDVPGLLGIENQT  TG H+KRLDMLLAK
Sbjct  241  SYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLDMLLAK  300

Query  301  HDLPNTLTYQDKSDRIEFTGQLDEHQTHSFYRLQQVFKQEFGNRPelvllnnnrlarnnd  360
            HDLPNTLTY+DK+DRIEFTGQLDEHQ+H+F RLQQVFKQEFGNRP  ++L NN+    ND
Sbjct  301  HDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRP-ALVLLNNKRLTRND  359

Query  361  elnFDVRAVSLGRVPYVVLKNNLRYPVGATTENGLrieairsdaiiiikgeqqfiikLNR  420
            ELNFDVRAVSLGR+PYVVLKNNLRYPVGATTENGLRIEAIR DAI+I KGEQQFIIKLNR
Sbjct  360  ELNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFIIKLNR  419

Query  421  SPAL  424
            SP L
Sbjct  420  SPVL  423

3) G655_16590 in NC_020912


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  363 bits (1362),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 207/423 (49%), Positives = 314/423 (75%), Gaps = 12/423 (2%)

Query  1    MAWKIRFYSGLNQGAEVSLGEGRVALGSDPLQADLVLLDEGIAAVHLVLEVDAQGVRLLE  60
            M+WKIRFY GLN++ EV+L+EGR+A+GSDPLQAD+VL+DE++A+ HL+LEV+++++RLLE
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   WAEGCEPRQDGQAQVAGAILQALAGQTCGPLRWAFCDPQRSFPERFPEAEVQT--APVRR  118
            WA    P Q+G++  +GA LQALA Q  GPL WAFCD Q++FP++++E+ V     PVR+
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  119  KPSARAGGVWllgislalalcllgmlVEPW--SARQHGMAGEEPLAKVRTYLREQGM---  173
            + S  AGG+ L+   +     L+ +  E W  S+  +GMA +E    +R +L  ++    
Sbjct  121  NRSRVAGGM-LILCLVLALGLLMLLGHEGWQRSSMSNGMAEQE----LRRFLNGDSAYRH  175

Query  174  SEVDVQRQGDSLLLGGYLEDNARRLALQRYLDGSGVDYRLEARSMEDIRQGVDFILQKFG  233
              V++  + ++LLL GY++ N +RLALQ+YLD  ++ YRLE R+ME++RQGVDFILQK+G
Sbjct  176  VSVQMMPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLG  235

Query  234  YRQILSSNADKPGWVRLNGELAEQDERWARIDALLESEVPGLLGVENQVRVAGSHLRRLE  293
            Y Q+ S N+ +PGWVRL GE+++  ++W  I++LL  +VPGLLG+ENQ + +G+H++RL+
Sbjct  236  YAQLQSYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLD  295

Query  294  RLLADAGLDRQLSFRERGERIELSGTLDEVQLSAFYRLQREFQQEFGNRPSLELLSRGKR  353
             LLA  +L   L+++++ +RIE++G LDE Q   F RLQ+ F+QEFGNRP+L LL+  + 
Sbjct  296  MLLAKHDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRL  355

Query  354  ASGDELEFTVRSVSLGRVPYVVLGDGQKYPVGASTSRGVRILAIEPESILVARGKQRFII  413
            +  DEL+F VR+VSLGR+PYVVL +  +YPVGA+T  G+RI AI  ++I++++G Q+FII
Sbjct  356  TRNDELNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFII  415

Query  414  NLK  416
            +L+
Sbjct  416  KLN  418

4) pscD in NC_017549


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  363 bits (1362),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 206/423 (49%), Positives = 315/423 (75%), Gaps = 12/423 (2%)

Query  1    MAWKIRFYSGLNQGAEVSLGEGRVALGSDPLQADLVLLDEGIAAVHLVLEVDAQGVRLLE  60
            M+WKIRFY GLN++ EV+L+EGR+A+GSDPLQAD+VL+DE++A+ HL+LEV+++++RLLE
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   WAEGCEPRQDGQAQVAGAILQALAGQTCGPLRWAFCDPQRSFPERFPEAEVQT--APVRR  118
            WA    P Q+G++  +GA LQALA Q  GPL WAFCD Q++FP++++E+ V     PVR+
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  119  KSSARaggvwllgvslalalcllgmlvEPW--SARQHGMADEEPLAKVRAYLREQGM---  173
            + S R +G  L+   +     L+ +  E W  S+  +GMA++E    +R +L  ++    
Sbjct  121  NRS-RVAGGMLILCLVLALGLLMLLGHEGWQRSSMSNGMAEQE----LRRFLNGDSAYRH  175

Query  174  SEVDVQRQGDSLLLGGYLEDNARRLALQRYLDGSGVDYRLEARSMEDIRQGVDFILQKFG  233
              V++  + ++LLL GY++ N +RLALQ+YLD  ++ YRLE R+ME++RQGVDFILQK+G
Sbjct  176  VSVQMMPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLG  235

Query  234  YRQILSSNADKPGWVRLNGELAEQDERWARIDALLESEVPGLLGVENQVRVAGSHLRRLE  293
            Y Q+ S N+ +PGWVRL GE+++  ++W  I++LL  +VPGLLG+ENQ + +G+H++RL+
Sbjct  236  YAQLQSYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLD  295

Query  294  RLLADAGLDRQLSFRERGERIELSGTLDEVQLNAFYRLQREFQQEFGNRPSLELLSRGKR  353
             LLA  +L   L+++++ +RIE++G LDE Q + F RLQ+ F+QEFGNRP+L LL+  + 
Sbjct  296  MLLAKHDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRL  355

Query  354  ASGDELEFTVRSVSLGRVPYVVLGDGQKYPVGASTSRGVRILAIEPESILVARGKQRFII  413
            +  DEL+F VR+VSLGR+PYVVL +  +YPVGA+T  G+RI AI  ++I++++G Q+FII
Sbjct  356  TRNDELNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFII  415

Query  414  NLK  416
            +L+
Sbjct  416  KLN  418

5) pscD in NC_002516


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  362 bits (1361),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 206/423 (49%), Positives = 315/423 (75%), Gaps = 12/423 (2%)

Query  1    MAWKIRFYSGLNQGAEVSLGEGRVALGSDPLQADLVLLDEGIAAVHLVLEVDAQGVRLLE  60
            M+WKIRFY GLN++ EV+L+EGR+A+GSDPLQAD+VL+DE++A+ HL+LEV+++++RLLE
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   WAEGCEPRQDGQAQVAGAILQALAGQTCGPLRWAFCDPQRSFPERFPEAEVQT--APVRR  118
            WA    P Q+G++  +GA LQALA Q  GPL WAFCD Q++FP++++E+ V     PVR+
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  119  KSSARaggawllgvslalalcllgmlVEPW--SARQHGMAGEEPLAKVRAYLREQGM---  173
            + S R +G+ L+   +     L+ +  E W  S+  +GMA +E    +R +L  ++    
Sbjct  121  NRS-RVAGGMLILCLVLALGLLMLLGHEGWQRSSMSNGMAEQE----LRRFLNGDSAYRH  175

Query  174  SEVDVQRQGDSLLLGGYLEDNARRLALQRYLDGSGVDYRLEARSMEDIRQGVDFILQKFG  233
              V++  + ++LLL GY++ N +RLALQ+YLD  ++ YRLE R+ME++RQGVDFILQK+G
Sbjct  176  VSVQMMPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLG  235

Query  234  YRQILSSNADKPGWVRLNGELAEQDERWARIDALLESEVPGLLGVENQVRVAGSHLRRLE  293
            Y Q+ S N+ +PGWVRL GE+++  ++W  I++LL  +VPGLLG+ENQ + +G+H++RL+
Sbjct  236  YAQLQSYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLD  295

Query  294  RLLADAGLDRQLSFRERGERIELSGTLDEVQLSAFYRLQREFQQEFGNRPSLVLLSRGKR  353
             LLA  +L   L+++++ +RIE++G LDE Q   F RLQ+ F+QEFGNRP+LVLL+  + 
Sbjct  296  MLLAKHDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRL  355

Query  354  ASGDELEFTIRSVSLGRVPYVVLGDGQKYPVGASTSRGVRILAIEPESILVARGKQRFII  413
            +  DEL+F +R+VSLGR+PYVVL +  +YPVGA+T  G+RI AI  ++I++++G Q+FII
Sbjct  356  TRNDELNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFII  415

Query  414  NLK  416
            +L+
Sbjct  416  KLN  418

6) pscD in NC_017548


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  361 bits (1356),  Expect = 4e-101, Method: Compositional matrix adjust.
 Identities = 201/421 (48%), Positives = 313/421 (75%), Gaps = 8/421 (1%)

Query  1    MAWKIRFYSGLNQGAEVSLGEGRVALGSDPLQADLVLLDEGIAAVHLVLEVDAQGVRLLE  60
            M+WKIRFY GLN++ EV+L+EGR+A+GSDPLQAD+VL+DE++A+ HL+LEV+++++RLLE
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   WAEGCEPRQDGQAQVAGAILQALAGQTCGPLRWAFCDPQRSFPERFPEAEVQT--APVRR  118
            WA    P Q+G++  +GA LQALA Q  GPL WAFCD Q++FP++++E+ V     PVR+
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  119  KSSARaggawllgvslalalcllgmlVEPWSARQHGMAGEEPQAKVRAYLREQGM---SE  175
            + S R +G+ L+   +     L+ +  E W  ++ +M+   ++  +R +L  ++      
Sbjct  121  NRS-RVAGGMLILCLVLALGLLMLLGHEGW--QRSSMSNGMAEQELRRFLNGDSAYRHVS  177

Query  176  VDVQRQGDSLLLGGYLEDNARRLALQRYLDGSGVDYRLEARSMEDIRQGVDFILQKFGYR  235
            V++  + ++LLL GY++ N +RLALQ+YLD  ++ YRLE R+ME++RQGVDFILQK+GY 
Sbjct  178  VQMMPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLGYA  237

Query  236  QILSSNADKPGWVRLNGELAEQDERWARIDALLESEVPGLLGVENQVRVAGSHLRRLERL  295
            Q+ S N+ +PGWVRL GE+++  ++W  I++LL  +VPGLLG+ENQ + +G+H++RL+ L
Sbjct  238  QLQSYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLDML  297

Query  296  LADAGLDRQLSFRERGERIELSGTLDEVQLSAFYRLQREFQQEFGNRPSLELLSRGKRAS  355
            LA  +L   L+++++ +RIE++G LDE Q   F RLQ+ F+QEFGNRP+L LL+  + + 
Sbjct  298  LAKHDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRLTR  357

Query  356  GDELEFTIRSVSLGRVPYVVLGDGQKYPVGASTSRGVRILAIEPESILVARGKQRFIINL  415
             DEL+F +R+VSLGR+PYVVL +  +YPVGA+T  G+RI AI  ++I++++G Q+FII+L
Sbjct  358  NDELNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFIIKL  417

Query  416  K  416
            +
Sbjct  418  N  418

7) pscD in NC_008463


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  360 bits (1353),  Expect = 7e-101, Method: Compositional matrix adjust.
 Identities = 206/423 (49%), Positives = 314/423 (75%), Gaps = 12/423 (2%)

Query  1    MAWKIRFYSGLNQGAEVSLGEGRVALGSDPLQADLVLLDEGIAAVHLVLEVDAQGVRLLE  60
            M+WKIRFY GLN++ EV+L+EGR+A+GSDPLQAD+VL+DE++A+ HL+LEV+++++RLLE
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   WAEGCEPRQDGQAQVAGAILQALAGQTCGPLRWAFCDPQRSFPERF--PEVEAQTAPVRR  118
            WA    P Q+G++  +GA LQALA Q  GPL WAFCD Q++FP+++  P V ++  PVR+
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  119  KPSARaggawllgislalalcllgmlVEPW--SARQHGMAGEEPLARVRAYLREQGM---  173
            + S R +G+ L+   +     L+ +  E W  S+  +GMA +E    +R +L  ++    
Sbjct  121  NRS-RVAGGMLILCLVLALGLLMLLGHEGWQRSSMSNGMAEQE----LRRFLNGDSAYRH  175

Query  174  SEVDVQRQGDSLLLGGYLEDNARRLALQRYLDGSGVDYRLEARSMEDIRQGVDFILQKFG  233
              V++  + ++LLL GY++ N +RLALQ+YLD  ++ YRLE R+ME++RQGVDFILQK+G
Sbjct  176  VSVQMMPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLG  235

Query  234  YRQILSSNADKPGWVRLNGELAEQDERWARIDALLESEVPGLLGVENQVRVAGSHLRRLE  293
            Y Q+ S N+ +PGWVRL GE+++  ++W  I++LL  +VPGLLG+ENQ + +G+H++RL+
Sbjct  236  YAQLQSYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLD  295

Query  294  RLLADAGLDRQLSFRERGERIELSGTLDEVQLSAFYRLQREFQQEFGNRPSLELLSRGKR  353
             LLA  +L   L+++++ +RIE++G LDE Q   F RLQ+ F+QEFGNRP+L LL+  + 
Sbjct  296  MLLAKHDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRL  355

Query  354  ASGDELEFTVRSVSLGRVPYVVLGDGQKYPVGASTSRGVRILAIEPESILVARGKQRFII  413
            +  DEL+F VR+VSLGR+PYVVL +  +YPVGA+T  G+RI AI  ++I++++G Q+FII
Sbjct  356  TRNDELNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFII  415

Query  414  NLK  416
            +L+
Sbjct  416  KLN  418

8) PADK2_17110 in NC_018080


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  360 bits (1352),  Expect = 9e-101, Method: Compositional matrix adjust.
 Identities = 205/423 (49%), Positives = 314/423 (75%), Gaps = 12/423 (2%)

Query  1    MAWKIRFYSGLNQGAEVSLGEGRVALGSDPLQADLVLLDEGIAAVHLVLEVDAQGVRLLE  60
            M+WKIRFY GLN++ EV+L+EGR+A+GSDPLQAD+VL+DE++A+ HL+LEV+++++RLLE
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   WAEGCEPRQDGQAQVAGAILQALAGQTCGPLRWAFCDPQRSFPERFPEAEVQT--APVRR  118
            WA    P Q+G++  +GA LQALA Q  GPL WAFCD Q++FP++++E+ V     PVR+
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  119  KSSARaggawllgvslalalcllgmlVEPW--SARQHGMAGEEPLAKVRAYLREQGM---  173
            + S R +G+ L+   +     L+ +  E W  S+  +GMA +E    +R +L  ++    
Sbjct  121  NRS-RVAGGMLILCLVLALGLLMLLGHEGWQRSSMSNGMAEQE----LRRFLNGDSAYRH  175

Query  174  SEVDVQRQGDSLLLGGYLEDNARRLALQRYLDGSGVDYRLEARSMEDIRQGVDFILQKFG  233
              V++  + ++LLL GY++ N +RLALQ+YLD  ++ YRLE R+ME++RQGVDFILQK+G
Sbjct  176  VSVQMMPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLG  235

Query  234  YRQILSSNADKPGWVRLNGELAEQDERWARIDALLESEVPGLLGVENQVRVAGSHLRRLE  293
            Y Q+ S N+ +PGWVRL GE+++  ++W  I++LL  +VPGLLG+ENQ + +G+H++RL+
Sbjct  236  YAQLQSYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLD  295

Query  294  RLLADAGLDRQLSFRERGERIELSGTLDEVQLSAFYRLQREFQQEFGNRPSLELLSRGKR  353
             LLA  +L   L+++++ +RIE++G LDE Q   F RLQ+ F+QEFGNRP+L LL+  + 
Sbjct  296  MLLAKHDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRL  355

Query  354  ASGDELEFTIRSVSLGRVPYVVLGDGQKYPVGASTSRGVRILAIEPESILVARGKQRFII  413
            +  DEL+F +R+VSLGR+PYVVL +  +YPVGA+T  G+RI AI  ++I++++G Q+FII
Sbjct  356  TRNDELNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFII  415

Query  414  NLK  416
            +L+
Sbjct  416  KLN  418

9) pscD in NC_011770


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  359 bits (1350),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 204/423 (49%), Positives = 314/423 (75%), Gaps = 12/423 (2%)

Query  1    MAWKIRFYSGLNQGAEVSLGEGRVALGSDPLQADLVLLDEGIAAVHLVLEVDAQGVRLLE  60
            M+WKIRFY GLN++ EV+L+EGR+A+GSDPLQAD+VL+DE++A+ HL+LEV+++++RLLE
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   WAEGCEPRQDGQAQVAGAILQALAGQTCGPLRWTFCDPQRSFPERFPEAEVQT--APVRR  118
            WA    P Q+G++  +GA LQALA Q  GPL W+FCD Q++FP++++E+ V     PVR+
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  119  KSSARaggawllgvslalalcllgmlVEPW--SARQHGMAGEEPLAKVRAYLREQGM---  173
            + S R +G+ L+   +     L+ +  E W  S+  +GMA +E    +R +L  ++    
Sbjct  121  NRS-RVAGGMLILCLVLALGLLMLLGHEGWQRSSMSNGMAEQE----LRRFLNGDSAYRH  175

Query  174  SEVDVQRQGDSLLLGGYLEDNARRLALQRYLDGSGVDYRLEARSMEDIRQGVDFILQKFG  233
              V++  + ++LLL GY++ N +RLALQ+YLD  ++ YRLE R+ME++RQGVDFILQK+G
Sbjct  176  VSVQMMPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLG  235

Query  234  YRQILSSNADKPGWVRLNGELAEQDERWARIDALLESEVPGLLGVENQVRVAGSHLRRLE  293
            Y Q+ S N+ +PGWVRL GE+++  ++W  I++LL  +VPGLLG+ENQ + +G+H++RL+
Sbjct  236  YAQLQSYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLD  295

Query  294  RLLADAGLDRQLSFRERGERIELSGTLDEVQLSAFYRLQREFQQEFGNRPSLELLSRGKR  353
             LLA  +L   L+++++ +RIE++G LDE Q   F RLQ+ F+QEFGNRP+L LL+  + 
Sbjct  296  MLLAKHDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRL  355

Query  354  ASGDELEFTIRSVSLGRVPYVVLGDGQKYPVGASTSRGVRILAIEPESILVARGKQRFII  413
            +  DEL+F +R+VSLGR+PYVVL +  +YPVGA+T  G+RI AI  ++I++++G Q+FII
Sbjct  356  TRNDELNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFII  415

Query  414  NLK  416
            +L+
Sbjct  416  KLN  418

10) ascD in NC_009350


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  340 bits (1278),  Expect = 5e-95, Method: Compositional matrix adjust.
 Identities = 210/422 (50%), Positives = 316/422 (75%), Gaps = 8/422 (1%)

Query  1    MSWKCRVYRGLNRGVEVPLPEGRLVIGSDPLKADLVLVDEGMAPEHLVLLVNGEGITLQA  60
            MSWK R YRGLN+++EV L+EGRL IGSDPL+AD+VLVDE++AP HL+L V+ ++I L  
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   WADGITPTQDGVALTAGEALRAETRLEAGPLLWSFCDSSRSLPEQLEALaavvaparapr  120
            WA+  +P+Q+G +L++G +L+A +R EAGPLLW+FCD  +++P+QL   A         +
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  121  rrpaGADVWMGAlclslvvavvlllGTGWWHGADENESARSEQALKRFLAA-PNYRQV--  177
             R+  A+  +    +  +  ++LL   GW +++    ++ +EQ L+RFL + + YR+V  
Sbjct  121  NRSRVAGGMLILCLVLALGLLMLLGHEGWQRSS--MSNGMAEQELRRFLNGDSAYRHVSV  178

Query  178  -VLNSSDPELWQLSGYVDENSARLALQQYLDSKGFSYRLELRTMEDLRQGAGFILQKLGY  236
             ++ +++P L  L GYV+ N  RLALQQYLD+ ++SYRLELRTME+LRQG +FILQKLGY
Sbjct  179  QMMPNNEPLL--LKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLGY  236

Query  237  EQLQIRNGKEPGWLKLSGEIQRQDGKWSTIESLLKQEVPGLLGVENQVQIAGAYRKRLDA  296
             QLQ  NGK+PGW++L GE+     +W+ IESLLK++VPGLLG+ENQ +++G   KRLD 
Sbjct  237  AQLQSYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLDM  296

Query  297  LLKEQGLAGALRVREAGGRLELSGQLDErqlgqfqqvnqqfrrefGTHPTLELINQTRTP  356
            LL  ++L+ +L  ++  +R+E++GQLDE+Q  +FQ+++Q F++EFG +P+L L+N+ R  
Sbjct  297  LLAKHDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRLT  356

Query  357  RQDELAFDVRSVSFGRVPYVVLADNQRYPIGGATSSGVRVLAIRPDAVVVSKGKQQYIVK  416
            R+DEL FDVR+VS+GR+PYVVL +N RYP+G++T +G+R+ AIR DA+V++KG QQ+I+K
Sbjct  357  RNDELNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFIIK  416

Query  417  LK  418
            L+
Sbjct  417  LN  418

11) yscD in NC_008791


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  300 bits (1125),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 187/418 (45%), Positives = 307/418 (74%), Gaps = 5/418 (1%)

Query  1    MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTD  60
            MSW  RFY+G ++++EV+L++GR  +GSDPLQ+DIVL D ++AP HL+L V+ ++IRL +
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   --SAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT-QRKEPTDRL  117
              +  +  Q+G P++ G+ L+A +  E G LLW+F    + +P+ L  P+   ++   R 
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  118  PRSRlgivlgvlsllllltflgmlghglWREYNQDGQLVEQEVRRLL-ATAAYKDVVLTS  176
             RSR++  + +L L+L L +L +LGH  W+  +    + EQE+RR+L + +AY++V +  
Sbjct  121  NRSRVAGGMLILCLVLALGLLMLLGHEGWQRSSMSNGMAEQELRRFLNGDSAYRHVSVQM  180

Query  177  PKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGIE  236
              + EP LL GY++ N+ RL+LQ++L++H++++RLELR+MEELRQG +FILQ+LGY  ++
Sbjct  181  MPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLGYAQLQ  240

Query  237  VSLAPQAGWLQLNGEVSEEIQK-QKIDSLLQAEVPGLLGVENKVRIAGNQRKRLDALLEQ  295
               + Q+GW++L GEV++  Q+ + I+SLL+ +VPGLLG+EN+ +++GN+ KRLD LL +
Sbjct  241  SYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLDMLLAK  300

Query  296  FGLDSDFTVNVKGELIELRGQVNDEKLSSFNQLQQTFRQEFGNRPKLELVNVGGQPQHDE  355
             +L + +T + K + IE+ GQ+++++  +F++LQQ F+QEFGNRP L L+N     ++DE
Sbjct  301  HDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRLTRNDE  360

Query  356  LNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAVIVSKGKREFVIQLN  413
            LNF+V+A+SLG++PYVVL N+ RYP GA  +NG+RI AIR+DA++++KG ++F+I+LN
Sbjct  361  LNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFIIKLN  418

12) YE105_P0035 in NC_015475


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  300 bits (1125),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 188/418 (45%), Positives = 308/418 (74%), Gaps = 5/418 (1%)

Query  1    MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTD  60
            MSW  RFY+G ++++EV+L++GR  +GSDPLQ+DIVL D ++AP HL+L V+ ++IRL +
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   --SAEPLLQEGLPVPLGTLLRAGTCLEVGFLLWTFVAVGQPLPETLQVPT-QRKEPTDRL  117
              +  +  Q+G P++ G+ L+A +  E G LLW+F    + +P+ L  P+   ++   R 
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  118  PRSRlgvglgvlsllllltflgmlghglWREYNQDGQLVEQEVRRLL-ATAAYKDVVLTS  176
             RSR++ G+ +L L+L L +L +LGH  W+  +    + EQE+RR+L + +AY++V +  
Sbjct  121  NRSRVAGGMLILCLVLALGLLMLLGHEGWQRSSMSNGMAEQELRRFLNGDSAYRHVSVQM  180

Query  177  PKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGIE  236
              + EP LL GY++ N+ RL+LQ++L++H++++RLELR+MEELRQG +FILQ+LGY  ++
Sbjct  181  MPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLGYAQLQ  240

Query  237  VSLAPQAGWLQLNGEVSEEIQK-QKIDSLLQAEVPGLLGVENKVRIAGNQRKRLDALLEQ  295
               + Q+GW++L GEV++  Q+ + I+SLL+ +VPGLLG+EN+ +++GN+ KRLD LL +
Sbjct  241  SYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLDMLLAK  300

Query  296  FGLDSDFTVNVKGELIELRGQVNDEKLSSFNQLQQTFRQEFGNRPKLELVNVGGQPQHDE  355
             +L + +T + K + IE+ GQ+++++  +F++LQQ F+QEFGNRP L L+N     ++DE
Sbjct  301  HDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRLTRNDE  360

Query  356  LNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAVIVSKGKREFVIQLN  413
            LNF+V+A+SLG++PYVVL N+ RYP GA  +NG+RI AIR+DA++++KG ++F+I+LN
Sbjct  361  LNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFIIKLN  418

13) yscD in NC_010157


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  298 bits (1115),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 188/419 (45%), Positives = 309/419 (74%), Gaps = 6/419 (1%)

Query  1    MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTD  60
            MSW  RFY+G ++++EV+L++GR  +GSDPLQ+DIVL D ++AP HL+L V+ ++IRL +
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   --SAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT-QRKEPTDRL  117
              +  +  Q+G P++ G+ L+A +  E G LLW+F    + +P+ L  P+   ++   R 
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  118  PRSRlgiglgvlsllllltflgllghglWREYNQDGQLVEQEVRRLL-ATAAYKDVVLTS  176
             RSR++ G+ +L L+L L +L LLGH  W+  +    + EQE+RR+L + +AY++V +  
Sbjct  121  NRSRVAGGMLILCLVLALGLLMLLGHEGWQRSSMSNGMAEQELRRFLNGDSAYRHVSVQM  180

Query  177  PKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGI  236
               + EP LL GY++ N+ RL+LQ++L++H++++RLELR+MEELRQG +FILQ+LGY  +
Sbjct  181  -MPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLGYAQL  239

Query  237  EVSLAPQAGWLQLNGEVSEEIQK-QKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLE  295
            +   + Q+GW++L GEV++  Q+ + I+SLL+ +VPGLLG+E++ +++GN+ KRLD LL 
Sbjct  240  QSYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLDMLLA  299

Query  296  QFGLDSDFTVNVKGELIELRGQVNDEKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHD  355
            + +L + +T + K + IE+ GQ+++++ ++F++LQQ F+QEFGNRP L L+N     ++D
Sbjct  300  KHDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRLTRND  359

Query  356  ELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAVIVSKGKREFVIQLN  414
            ELNF+V+A+SLG++PYVVL N+ RYP GA  +NG+RI AIR+DA++++KG ++F+I+LN
Sbjct  360  ELNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFIIKLN  418

14) YPA_CD0011 in NC_008122


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  298 bits (1115),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 188/419 (45%), Positives = 309/419 (74%), Gaps = 6/419 (1%)

Query  1    MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTD  60
            MSW  RFY+G ++++EV+L++GR  +GSDPLQ+DIVL D ++AP HL+L V+ ++IRL +
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   --SAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT-QRKEPTDRL  117
              +  +  Q+G P++ G+ L+A +  E G LLW+F    + +P+ L  P+   ++   R 
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  118  PRSRlgiglgvlsllllltflgllghglWREYNQDGQLVEQEVRRLL-ATAAYKDVVLTS  176
             RSR++ G+ +L L+L L +L LLGH  W+  +    + EQE+RR+L + +AY++V +  
Sbjct  121  NRSRVAGGMLILCLVLALGLLMLLGHEGWQRSSMSNGMAEQELRRFLNGDSAYRHVSVQM  180

Query  177  PKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGI  236
               + EP LL GY++ N+ RL+LQ++L++H++++RLELR+MEELRQG +FILQ+LGY  +
Sbjct  181  -MPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLGYAQL  239

Query  237  EVSLAPQAGWLQLNGEVSEEIQK-QKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLE  295
            +   + Q+GW++L GEV++  Q+ + I+SLL+ +VPGLLG+E++ +++GN+ KRLD LL 
Sbjct  240  QSYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLDMLLA  299

Query  296  QFGLDSDFTVNVKGELIELRGQVNDEKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHD  355
            + +L + +T + K + IE+ GQ+++++ ++F++LQQ F+QEFGNRP L L+N     ++D
Sbjct  300  KHDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRLTRND  359

Query  356  ELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAVIVSKGKREFVIQLN  414
            ELNF+V+A+SLG++PYVVL N+ RYP GA  +NG+RI AIR+DA++++KG ++F+I+LN
Sbjct  360  ELNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFIIKLN  418

15) yscD in NC_005813


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  298 bits (1115),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 188/419 (45%), Positives = 309/419 (74%), Gaps = 6/419 (1%)

Query  1    MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTD  60
            MSW  RFY+G ++++EV+L++GR  +GSDPLQ+DIVL D ++AP HL+L V+ ++IRL +
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   --SAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT-QRKEPTDRL  117
              +  +  Q+G P++ G+ L+A +  E G LLW+F    + +P+ L  P+   ++   R 
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  118  PRSRlgiglgvlsllllltflgllghglWREYNQDGQLVEQEVRRLL-ATAAYKDVVLTS  176
             RSR++ G+ +L L+L L +L LLGH  W+  +    + EQE+RR+L + +AY++V +  
Sbjct  121  NRSRVAGGMLILCLVLALGLLMLLGHEGWQRSSMSNGMAEQELRRFLNGDSAYRHVSVQM  180

Query  177  PKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGI  236
               + EP LL GY++ N+ RL+LQ++L++H++++RLELR+MEELRQG +FILQ+LGY  +
Sbjct  181  -MPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLGYAQL  239

Query  237  EVSLAPQAGWLQLNGEVSEEIQK-QKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLE  295
            +   + Q+GW++L GEV++  Q+ + I+SLL+ +VPGLLG+E++ +++GN+ KRLD LL 
Sbjct  240  QSYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLDMLLA  299

Query  296  QFGLDSDFTVNVKGELIELRGQVNDEKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHD  355
            + +L + +T + K + IE+ GQ+++++ ++F++LQQ F+QEFGNRP L L+N     ++D
Sbjct  300  KHDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRLTRND  359

Query  356  ELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAVIVSKGKREFVIQLN  414
            ELNF+V+A+SLG++PYVVL N+ RYP GA  +NG+RI AIR+DA++++KG ++F+I+LN
Sbjct  360  ELNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFIIKLN  418

16) yscD in NC_003131


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  298 bits (1115),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 188/419 (45%), Positives = 309/419 (74%), Gaps = 6/419 (1%)

Query  1    MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTD  60
            MSW  RFY+G ++++EV+L++GR  +GSDPLQ+DIVL D ++AP HL+L V+ ++IRL +
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   --SAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT-QRKEPTDRL  117
              +  +  Q+G P++ G+ L+A +  E G LLW+F    + +P+ L  P+   ++   R 
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  118  PRSRlgiglgvlsllllltflgllghglWREYNQDGQLVEQEVRRLL-ATAAYKDVVLTS  176
             RSR++ G+ +L L+L L +L LLGH  W+  +    + EQE+RR+L + +AY++V +  
Sbjct  121  NRSRVAGGMLILCLVLALGLLMLLGHEGWQRSSMSNGMAEQELRRFLNGDSAYRHVSVQM  180

Query  177  PKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGI  236
               + EP LL GY++ N+ RL+LQ++L++H++++RLELR+MEELRQG +FILQ+LGY  +
Sbjct  181  -MPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLGYAQL  239

Query  237  EVSLAPQAGWLQLNGEVSEEIQK-QKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLE  295
            +   + Q+GW++L GEV++  Q+ + I+SLL+ +VPGLLG+E++ +++GN+ KRLD LL 
Sbjct  240  QSYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLDMLLA  299

Query  296  QFGLDSDFTVNVKGELIELRGQVNDEKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHD  355
            + +L + +T + K + IE+ GQ+++++ ++F++LQQ F+QEFGNRP L L+N     ++D
Sbjct  300  KHDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRLTRND  359

Query  356  ELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAVIVSKGKREFVIQLN  414
            ELNF+V+A+SLG++PYVVL N+ RYP GA  +NG+RI AIR+DA++++KG ++F+I+LN
Sbjct  360  ELNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFIIKLN  418

17) YPDSF_3966 in NC_009377


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  298 bits (1115),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 188/419 (45%), Positives = 309/419 (74%), Gaps = 6/419 (1%)

Query  1    MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTD  60
            MSW  RFY+G ++++EV+L++GR  +GSDPLQ+DIVL D ++AP HL+L V+ ++IRL +
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   --SAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT-QRKEPTDRL  117
              +  +  Q+G P++ G+ L+A +  E G LLW+F    + +P+ L  P+   ++   R 
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  118  PRSRlgiglgvlsllllltflgllghglWREYNQDGQLVEQEVRRLL-ATAAYKDVVLTS  176
             RSR++ G+ +L L+L L +L LLGH  W+  +    + EQE+RR+L + +AY++V +  
Sbjct  121  NRSRVAGGMLILCLVLALGLLMLLGHEGWQRSSMSNGMAEQELRRFLNGDSAYRHVSVQM  180

Query  177  PKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGI  236
               + EP LL GY++ N+ RL+LQ++L++H++++RLELR+MEELRQG +FILQ+LGY  +
Sbjct  181  -MPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLGYAQL  239

Query  237  EVSLAPQAGWLQLNGEVSEEIQK-QKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLE  295
            +   + Q+GW++L GEV++  Q+ + I+SLL+ +VPGLLG+E++ +++GN+ KRLD LL 
Sbjct  240  QSYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLDMLLA  299

Query  296  QFGLDSDFTVNVKGELIELRGQVNDEKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHD  355
            + +L + +T + K + IE+ GQ+++++ ++F++LQQ F+QEFGNRP L L+N     ++D
Sbjct  300  KHDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRLTRND  359

Query  356  ELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAVIVSKGKREFVIQLN  414
            ELNF+V+A+SLG++PYVVL N+ RYP GA  +NG+RI AIR+DA++++KG ++F+I+LN
Sbjct  360  ELNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFIIKLN  418

18) pYV0080 in NC_006153


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  298 bits (1115),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 188/419 (45%), Positives = 309/419 (74%), Gaps = 6/419 (1%)

Query  1    MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTD  60
            MSW  RFY+G ++++EV+L++GR  +GSDPLQ+DIVL D ++AP HL+L V+ ++IRL +
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   --SAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT-QRKEPTDRL  117
              +  +  Q+G P++ G+ L+A +  E G LLW+F    + +P+ L  P+   ++   R 
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  118  PRSRlgiglgvlsllllltflgllghglWREYNQDGQLVEQEVRRLL-ATAAYKDVVLTS  176
             RSR++ G+ +L L+L L +L LLGH  W+  +    + EQE+RR+L + +AY++V +  
Sbjct  121  NRSRVAGGMLILCLVLALGLLMLLGHEGWQRSSMSNGMAEQELRRFLNGDSAYRHVSVQM  180

Query  177  PKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGI  236
               + EP LL GY++ N+ RL+LQ++L++H++++RLELR+MEELRQG +FILQ+LGY  +
Sbjct  181  -MPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLGYAQL  239

Query  237  EVSLAPQAGWLQLNGEVSEEIQK-QKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLE  295
            +   + Q+GW++L GEV++  Q+ + I+SLL+ +VPGLLG+E++ +++GN+ KRLD LL 
Sbjct  240  QSYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLDMLLA  299

Query  296  QFGLDSDFTVNVKGELIELRGQVNDEKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHD  355
            + +L + +T + K + IE+ GQ+++++ ++F++LQQ F+QEFGNRP L L+N     ++D
Sbjct  300  KHDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRLTRND  359

Query  356  ELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAVIVSKGKREFVIQLN  414
            ELNF+V+A+SLG++PYVVL N+ RYP GA  +NG+RI AIR+DA++++KG ++F+I+LN
Sbjct  360  ELNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFIIKLN  418

19) YPTS_4209 in NC_010635


> AY144116|18|G18|27550049|AAO18032.1|Photorhabdus_luminescens_W14|-|13983..15254|lscD|-|LscD
Length=423

 Score =  298 bits (1115),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 188/419 (45%), Positives = 309/419 (74%), Gaps = 6/419 (1%)

Query  1    MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTD  60
            MSW  RFY+G ++++EV+L++GR  +GSDPLQ+DIVL D ++AP HL+L V+ ++IRL +
Sbjct  1    MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPAHLILEVEPDSIRLLE  60

Query  61   --SAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT-QRKEPTDRL  117
              +  +  Q+G P++ G+ L+A +  E G LLW+F    + +P+ L  P+   ++   R 
Sbjct  61   WAGETAPSQNGEPLSPGATLQALARQEAGPLLWAFCDQQHTFPNQLAEPAVTPRQHPVRQ  120

Query  118  PRSRlgiglgvlsllllltflgllghglWREYNQDGQLVEQEVRRLL-ATAAYKDVVLTS  176
             RSR++ G+ +L L+L L +L LLGH  W+  +    + EQE+RR+L + +AY++V +  
Sbjct  121  NRSRVAGGMLILCLVLALGLLMLLGHEGWQRSSMSNGMAEQELRRFLNGDSAYRHVSVQM  180

Query  177  PKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGI  236
               + EP LL GY++ N+ RL+LQ++L++H++++RLELR+MEELRQG +FILQ+LGY  +
Sbjct  181  -MPNNEPLLLKGYVNLNQQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLGYAQL  239

Query  237  EVSLAPQAGWLQLNGEVSEEIQK-QKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLE  295
            +   + Q+GW++L GEV++  Q+ + I+SLL+ +VPGLLG+E++ +++GN+ KRLD LL 
Sbjct  240  QSYNGKQPGWVRLMGEVTDTSQQWNDIESLLKRDVPGLLGIENQTKFTGNHIKRLDMLLA  299

Query  296  QFGLDSDFTVNVKGELIELRGQVNDEKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHD  355
            + +L + +T + K + IE+ GQ+++++ ++F++LQQ F+QEFGNRP L L+N     ++D
Sbjct  300  KHDLPNTLTYKDKNDRIEFTGQLDEHQAHNFQRLQQVFKQEFGNRPALVLLNNKRLTRND  359

Query  356  ELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAVIVSKGKREFVIQLN  414
            ELNF+V+A+SLG++PYVVL N+ RYP GA  +NG+RI AIR+DA++++KG ++F+I+LN
Sbjct  360  ELNFDVRAVSLGRIPYVVLKNNLRYPVGATTENGLRIEAIRQDAIVITKGEQQFIIKLN  418