Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of IS629 gene of AJ303141

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) p1ECUMN_0017
( - )

NC_011749
(Escherichia coli UMN026)

e-170

95.4

2) EC042_pAA006
( - )

NC_017627
(Escherichia coli 042)

e-169

95.4

3) EC042_pAA156
( - )

NC_017627
(Escherichia coli 042)

e-169

98.1

4) ECO103_4899
( - )

NC_013353
(Escherichia coli 12009)

e-146

93.8

5) unnamed
( - )

NC_013353
(Escherichia coli 12009)

e-146

93.8

6) unnamed
( - )

NC_013353
(Escherichia coli 12009)

e-146

93.8

7) ECO103_3579
( - )

NC_013353
(Escherichia coli 12009)

e-146

93.8

8) EC042_4578
( - )

NC_017626
(Escherichia coli 042)

e-130

94.4

9) unnamed
( - )

NC_007608
(Shigella boydii Sb227)

e-126

94.3

10) ECO26_p1-48
( - )

NC_013369
(Escherichia coli 11368)

e-121

96.7

11) ECO111_0804
( - )

NC_013364
(Escherichia coli 11128)

e-119

95.8

• Sequence Alignments

1) p1ECUMN_0017 in NC_011749


>AJ303141|18|G17|57434403|CAI43820.1|Escherichia_coli_RW1374|+|24993..25319|IS629|-|hypothetical 
          Length = 327

 Score = 594 bits (1533), Expect = e-170
 Identities = 308/323 (95%)
 Strand = Plus / Plus

Query: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60
           |||||||||||||||||||||||||||||||||||||| |||||  | ||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcagcgggcgattcgtatggttctg 60

Query: 61  gaaagtcagggcgaatatgactcacaatgggcgacaatttgttccattgccccaaagatt 120
           ||||||||||  |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 61  gaaagtcaggatgaatatgactcacagtgggcggcaatttgttccattgccccaaagatt 120

Query: 121 ggctgtacaccggagactctgcgtgtctgggtacgccagcatgagcgggataccggaggc 180
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||  | 
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggagt 180

Query: 181 ggtgatggcgggctcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtgatggtggactcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240

Query: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttattttgcgaaggcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttattttgcgaaggcg 300

Query: 301 gagttcgaccgcctctggaaaaa 323
           |||||||||||||||||||||||
Sbjct: 301 gagttcgaccgcctctggaaaaa 323

2) EC042_pAA006 in NC_017627


>AJ303141|18|G17|57434403|CAI43820.1|Escherichia_coli_RW1374|+|24993..25319|IS629|-|hypothetical 
          Length = 327

 Score = 591 bits (1525), Expect = e-169
 Identities = 311/327 (95%)
 Strand = Plus / Plus

Query: 1   atgactaaaaatactcgtttt-cccccgaagtccgtcagagggcgattcgtatggttctg 59
           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcagcgggcgattcgtatggttctg 60

Query: 60  gaaagtcagggcgaatatgactcacaatgggcggtaatttgttccattgccccaaagatt 119
           ||||||||||  |||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 61  gaaagtcaggatgaatatgactcacagtgggcggcaatttgttccattgccccaaagatt 120

Query: 120 ggctgtacaccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 179
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggagt 180

Query: 180 ggtgatggcgggctcaccactgctgaacgtcagcgtctgaaagagctggagcgtgaaaat 239
           |||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 ggtgatggtggactcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240

Query: 240 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttattttgcgaaggcg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttattttgcgaaggcg 300

Query: 300 aggttcgaccgcctctggaaaaaatga 326
             ||||||||||||||||||||||| |
Sbjct: 301 gagttcgaccgcctctggaaaaaataa 327

3) EC042_pAA156 in NC_017627


>AJ303141|18|G17|57434403|CAI43820.1|Escherichia_coli_RW1374|+|24993..25319|IS629|-|hypothetical 
          Length = 327

 Score = 590 bits (1523), Expect = e-169
 Identities = 303/309 (98%)
 Strand = Plus / Plus

Query: 1   ttttcccccgaagtccgtcagcgggcgattcgtatggttctggaaagtcaggatgaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19  ttttcccccgaagtccgtcagcgggcgattcgtatggttctggaaagtcaggatgaatat 78

Query: 61  gactcacagtgggcggcaatttgttccattgccccaaagattggctgtacgccggagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  gactcacagtgggcggcaatttgttccattgccccaaagattggctgtacgccggagact 138

Query: 121 ctgcgtgtctgggttcgccagcatgagcgggataccgggggcggtgatggtgggctcacc 180
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct: 139 ctgcgtgtctgggttcgccagcatgagcgggataccgggagtggtgatggtggactcacc 198

Query: 181 agcgctgaacgtcagcgtctgaaagagctggaacgtgaaaatcgtgaactgcgccgcagt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 accgctgaacgtcagcgtctgaaagagctggaacgtgaaaatcgtgaactgcgccgcagt 258

Query: 241 aacgatattcttcgccaggcttccgcttattttgcgaaggcggagttcgaccgcctctgg 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aacgatatccttcgccaggcttccgcttattttgcgaaggcggagttcgaccgcctctgg 318

Query: 301 aaaaaatga 309
           ||||||| |
Sbjct: 319 aaaaaataa 327

4) unnamed in NC_013353


>AJ303141|18|G17|57434403|CAI43820.1|Escherichia_coli_RW1374|+|24993..25319|IS629|-|hypothetical 
          Length = 327

 Score = 513 bits (1325), Expect = e-146
 Identities = 270/288 (94%)
 Strand = Plus / Plus

Query: 55  atgactaaaaatacacgtttttcccccgaagtccgtcaacgggcagttcgtatggttctg 114
           |||||||||||||| ||||||||||||||||||||||| |||||  ||||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcagcgggcgattcgtatggttctg 60

Query: 115 gaaagtcagggcgaatatgactcacaatgggcggcaatttgttccattaccccaaagatt 174
           ||||||||||  |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 61  gaaagtcaggatgaatatgactcacagtgggcggcaatttgttccattgccccaaagatt 120

Query: 175 ggctgtacgccggagactctgcgtgtctgggtacgccagcatgagcgggataccggaggc 234
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||  | 
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggagt 180

Query: 235 ggtgatggtgggctcaccaccactgaacgtcagcctctgaaagagctggagcgtaaaaat 294
           ||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||| |||||
Sbjct: 181 ggtgatggtggactcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240

Query: 295 cgtgaactgcgccgcagtaacgatatccttcgccagacttccgcttat 342
           |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttat 288

5) ECO103_3579 in NC_013353


>AJ303141|18|G17|57434403|CAI43820.1|Escherichia_coli_RW1374|+|24993..25319|IS629|-|hypothetical 
          Length = 327

 Score = 513 bits (1325), Expect = e-146
 Identities = 270/288 (94%)
 Strand = Plus / Plus

Query: 1   atgactaaaaatacacgtttttcccccgaagtccgtcaacgggcagttcgtatggttctg 60
           |||||||||||||| ||||||||||||||||||||||| |||||  ||||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcagcgggcgattcgtatggttctg 60

Query: 61  gaaagtcagggcgaatatgactcacaatgggcggcaatttgttccattaccccaaagatt 120
           ||||||||||  |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 61  gaaagtcaggatgaatatgactcacagtgggcggcaatttgttccattgccccaaagatt 120

Query: 121 ggctgtacgccggagactctgcgtgtctgggtacgccagcatgagcgggataccggaggc 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||  | 
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggagt 180

Query: 181 ggtgatggtgggctcaccaccactgaacgtcagcctctgaaagagctggagcgtaaaaat 240
           ||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||| |||||
Sbjct: 181 ggtgatggtggactcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240

Query: 241 cgtgaactgcgccgcagtaacgatatccttcgccagacttccgcttat 288
           |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttat 288

6) ECO103_4899 in NC_013353


>AJ303141|18|G17|57434403|CAI43820.1|Escherichia_coli_RW1374|+|24993..25319|IS629|-|hypothetical 
          Length = 327

 Score = 513 bits (1325), Expect = e-146
 Identities = 270/288 (94%)
 Strand = Plus / Plus

Query: 1   atgactaaaaatacacgtttttcccccgaagtccgtcaacgggcagttcgtatggttctg 60
           |||||||||||||| ||||||||||||||||||||||| |||||  ||||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcagcgggcgattcgtatggttctg 60

Query: 61  gaaagtcagggcgaatatgactcacaatgggcggcaatttgttccattaccccaaagatt 120
           ||||||||||  |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 61  gaaagtcaggatgaatatgactcacagtgggcggcaatttgttccattgccccaaagatt 120

Query: 121 ggctgtacgccggagactctgcgtgtctgggtacgccagcatgagcgggataccggaggc 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||  | 
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggagt 180

Query: 181 ggtgatggtgggctcaccaccactgaacgtcagcctctgaaagagctggagcgtaaaaat 240
           ||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||| |||||
Sbjct: 181 ggtgatggtggactcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240

Query: 241 cgtgaactgcgccgcagtaacgatatccttcgccagacttccgcttat 288
           |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttat 288

7) unnamed in NC_013353


>AJ303141|18|G17|57434403|CAI43820.1|Escherichia_coli_RW1374|+|24993..25319|IS629|-|hypothetical 
          Length = 327

 Score = 513 bits (1325), Expect = e-146
 Identities = 270/288 (94%)
 Strand = Plus / Plus

Query: 55  atgactaaaaatacacgtttttcccccgaagtccgtcaacgggcagttcgtatggttctg 114
           |||||||||||||| ||||||||||||||||||||||| |||||  ||||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcagcgggcgattcgtatggttctg 60

Query: 115 gaaagtcagggcgaatatgactcacaatgggcggcaatttgttccattaccccaaagatt 174
           ||||||||||  |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 61  gaaagtcaggatgaatatgactcacagtgggcggcaatttgttccattgccccaaagatt 120

Query: 175 ggctgtacgccggagactctgcgtgtctgggtacgccagcatgagcgggataccggaggc 234
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||  | 
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggagt 180

Query: 235 ggtgatggtgggctcaccaccactgaacgtcagcctctgaaagagctggagcgtaaaaat 294
           ||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||| |||||
Sbjct: 181 ggtgatggtggactcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240

Query: 295 cgtgaactgcgccgcagtaacgatatccttcgccagacttccgcttat 342
           |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttat 288

8) EC042_4578 in NC_017626


>AJ303141|18|G17|57434403|CAI43820.1|Escherichia_coli_RW1374|+|24993..25319|IS629|-|hypothetical 
          Length = 327

 Score = 463 bits (1195), Expect = e-130
 Identities = 240/252 (95%)
 Strand = Plus / Plus

Query: 72  gaatatgactcacaatgggcggtagtttgttccattgccccaaagattggctgtacgcca 131
           |||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| 
Sbjct: 73  gaatatgactcacagtgggcggcaatttgttccattgccccaaagattggctgtacgccg 132

Query: 132 gagaccctgcgtgtctgggttcgccagcatgagcgggataccaggggcggtgatggaggg 191
           ||||| |||||||||||||||||||||||||||||||||||| || | |||||||| || 
Sbjct: 133 gagactctgcgtgtctgggttcgccagcatgagcgggataccgggagtggtgatggtgga 192

Query: 192 ctcaccaccgctgaacgtcagcgtctgaaagagctggagcgtgaaaatcgtgaactgcgc 251
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 193 ctcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaatcgtgaactgcgc 252

Query: 252 cgcagtagcgatatccttcgccaggcttccgcttattttgcgaaggcggagttcgaccgc 311
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cgcagtaacgatatccttcgccaggcttccgcttattttgcgaaggcggagttcgaccgc 312

Query: 312 ctctggaaaaaa 323
           ||||||||||||
Sbjct: 313 ctctggaaaaaa 324


 Score = 116 bits (298), Expect = 5e-26
 Identities = 64/70 (91%)
 Strand = Plus / Plus

Query: 1  atgactaaaaatactcgtttttcccccgaagttcgtcatagggtgatacgtatagttctg 60
          |||||||||||||||||||||||||||||||| |||||  ||| ||| ||||| ||||||
Sbjct: 1  atgactaaaaatactcgtttttcccccgaagtccgtcagcgggcgattcgtatggttctg 60

Query: 61 gaaagtcagg 70
          ||||||||||
Sbjct: 61 gaaagtcagg 70

9) unnamed in NC_007608


>AJ303141|18|G17|57434403|CAI43820.1|Escherichia_coli_RW1374|+|24993..25319|IS629|-|hypothetical 
          Length = 327

 Score = 447 bits (1154), Expect = e-126
 Identities = 233/247 (94%)
 Strand = Plus / Plus

Query: 55  atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 114
           |||||||||||||||||||||||||||||||||||||| |||||  | ||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcagcgggcgattcgtatggttctg 60

Query: 115 gaaagtcagggcgaatatgactcacaatgggcgacaatttgttccattgctccaaagatt 174
           ||||||||||  |||||||||||||| |||||| |||||||||||||||| |||||||||
Sbjct: 61  gaaagtcaggatgaatatgactcacagtgggcggcaatttgttccattgccccaaagatt 120

Query: 175 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggagt 180

Query: 235 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggagcgtgaaaat 294
           |||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 ggtgatggtggactcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240

Query: 295 cgtgaac 301
           |||||||
Sbjct: 241 cgtgaac 247

10) ECO26_p1-48 in NC_013369


>AJ303141|18|G17|57434403|CAI43820.1|Escherichia_coli_RW1374|+|24993..25319|IS629|-|hypothetical 
          Length = 327

 Score = 433 bits (1118), Expect = e-121
 Identities = 231/240 (96%)
 Strand = Plus / Plus

Query: 2   tgggcggcaatttgttccattgccc-aaagattggctgtacaccggagactctgcgtgtc 60
           ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 88  tgggcggcaatttgttccattgccccaaagattggctgtacgccggagactctgcgtgtc 147

Query: 61  tggggacgccagcatgagcgggataccgggagcggtgatggtgggctcaccagcgctgaa 120
           ||||  |||||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct: 148 tgggttcgccagcatgagcgggataccgggagtggtgatggtggactcaccaccgctgaa 207

Query: 121 cgtcagcgtctgaaagagctggaacgtgaaaaccgtgaactgcgccgcagtaacgatatc 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 208 cgtcagcgtctgaaagagctggaacgtgaaaatcgtgaactgcgccgcagtaacgatatc 267

Query: 181 cttcgccaggcttccgcttattttgcgaaggccgagttcgaccgcctctggaaaaaataa 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 268 cttcgccaggcttccgcttattttgcgaaggcggagttcgaccgcctctggaaaaaataa 327

11) ECO111_0804 in NC_013364


>AJ303141|18|G17|57434403|CAI43820.1|Escherichia_coli_RW1374|+|24993..25319|IS629|-|hypothetical 
          Length = 327

 Score = 427 bits (1101), Expect = e-119
 Identities = 229/240 (95%)
 Strand = Plus / Plus

Query: 2   tgggcggcaatttgttccattgccc-aaagattggctgtacaccggagactctgcgtgtc 60
           ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 88  tgggcggcaatttgttccattgccccaaagattggctgtacgccggagactctgcgtgtc 147

Query: 61  tggggacgcctgcatgagagggataccgggagcggtgatggtgggctcaccagcgctgaa 120
           ||||  |||| ||||||| ||||||||||||| ||||||||||| ||||||| |||||||
Sbjct: 148 tgggttcgccagcatgagcgggataccgggagtggtgatggtggactcaccaccgctgaa 207

Query: 121 cgtcagcgtctgaaagagctggaacgtgaaaaccgtgaactgcgccgcagtaacgatatc 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 208 cgtcagcgtctgaaagagctggaacgtgaaaatcgtgaactgcgccgcagtaacgatatc 267

Query: 181 cttcgccaggcttccgcttattttgcgaaggcggagttcgaccgcctctggaaaaaatga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 268 cttcgccaggcttccgcttattttgcgaaggcggagttcgaccgcctctggaaaaaataa 327