>AF282853|18|G18|1752700|AAC44706.1|Helicobacter_pylori_CCUG_17874=NCTC_11638|+|14838..18281|cagA|-|CagA
Length = 3444
Score = 1120 bits (2890), Expect = 0.0
Identities = 628/710 (88%)
Strand = Plus / Plus
Query: 1637 actcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaatttcaaa 1696
||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||
Sbjct: 1462 actcttcaaggtagcctaaaacatgatggcgtgatgtttgttgattattctaatttcaaa 1521
Query: 1697 tacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttcccat 1756
||||||||||||||||||| ||| || ||||| |||||| |||||||||||||||||||
Sbjct: 1522 tacaccaacgcctccaagaatcccaataagggtgtaggcgttacgaatggcgtttcccat 1581
Query: 1757 ttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtctcgct 1816
|| |||| | |||| |||||| ||| ||||||||||||||||||||||| |||||||
Sbjct: 1582 ttagaagtaggctttaacaaggtagctatctttaatttgcctgatttaaataatctcgct 1641
Query: 1817 atctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgccccca 1876
||| ||||||| | |||||||||||||||||||||||| | | ||||||||||| |||||
Sbjct: 1642 atcactagtttcgtaaggcggaatttagaggataaactaaccactaaaggattgtcccca 1701
Query: 1877 aaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttgaaaaa 1936
|||| ||||||||| | |||||||| ||||||| ||||||||| |||||| ||| ||||
Sbjct: 1702 caagaagctaataagcttatcaaagattttttgagcagcaacaaagaattggttggaaaa 1761
Query: 1937 gctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacggagtg 1996
||||| |||||||||||||||||||||| |||||||| |||||||||||||| | ||||
Sbjct: 1762 actttaaacttcaataaagctgtagctgacgctaaaaacacaggcaattatgatgaagtg 1821
Query: 1997 aaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagcaagaa 2056
||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct: 1822 aaaaaagctcagaaagatcttgaaaaatctctaaggaaacgagagcatttagagaaagaa 1881
Query: 2057 ataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagttcaa 2116
|| ||||||||| |||| ||| |||||||||||||||||||||||||| |||| ||||
Sbjct: 1882 gtagagaaaaaattggagagcaaaagcggcaacaaaaataaaatggaagcaaaagctcaa 1941
Query: 2117 gctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataaggaagca 2176
||||||||||||||||||| ||||||| | | |||||| |||||||| ||| || |||
Sbjct: 1942 gctaacagccaaaaagatgagatttttgcgttgatcaataaagaggctaatagagacgca 2001
Query: 2177 agaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataaagtt 2236
||| ||||||||||||||||||||||||||||| |||||||||| ||||||| ||
Sbjct: 2002 agagcaatcgcttacgctcagaatcttaaaggcatcaaaagggaattgtctgataaactt 2061
Query: 2237 aaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaagtggc 2296
||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 2062 gaaaatgtcaacaagaatttgaaagactttgataaatcttttgatgaattcaaaaatggc 2121
Query: 2297 aaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaag 2346
|||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 2122 aaaaataaggatttcagcaaggcagaagaaacactaaaagccctt-aaag 2170
Score = 843 bits (2175), Expect = e-245
Identities = 472/524 (90%)
Strand = Plus / Plus
Query: 56 cggcttttaatccacaacaatttatcaataatcttcaagtggcttttattaaacttgata 115
|||||||||| || || ||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct: 41 cggcttttaacccgcagcaatttatcaataatcttcaagtagcttttcttaaagttgata 100
Query: 116 gtgctgtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaacgatagggata 175
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 101 acgctgtcgcttcatacgatcctgatcaaaaaccaatcgttgataagaacgatagggata 160
Query: 176 acaggcaagcttttaatgtaatctcgcaattaagggaagaatacgccaataaagcgatca 235
|||||||||||||| | | ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 161 acaggcaagcttttgaaggaatctcgcaattaagggaagaatactccaataaagcgatca 220
Query: 236 aaaatcccaccaaaaagaatcagtatttttcagactttatcgataaaagcaatgatttga 295
||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| |
Sbjct: 221 aaaatcctaccaaaaagaatcagtatttttcagactttatcaataagagcaatgatttaa 280
Query: 296 tcaacaaaaacgatctcattgatacagattcttccacaaagagctttgaaaaatttgggg 355
|||||||| || ||||||||||| ||| |||||||||||||||||| | ||||||||||
Sbjct: 281 tcaacaaagacaatctcattgatgtagaatcttccacaaagagctttcagaaatttgggg 340
Query: 356 ctcagcgttaccaaatttttatgaattgggtgtcccatcaaaaagatccgtctaaaatca 415
||||||||||| |||||| | | |||||||||||||||||| ||||||||||||||||
Sbjct: 341 atcagcgttaccgaattttcacaagttgggtgtcccatcaaaacgatccgtctaaaatca 400
Query: 416 acacccaaaaaatccgagattttatggaaaatatcatacaaccccctatctctgatgata 475
|||||| | |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 401 acacccgatcgatccgaaattttatggaaaatatcatacaaccccctatccttgatgata 460
Query: 476 aagaaaaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcataggga 535
|||| |||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct: 461 aagagaaagcggagtttttgaaatctgccaaacaatcttttgcaggaatcattataggga 520
Query: 536 accaaacccgatcggatgaaaaattcatgggcgtttttggatga 579
| |||| |||| ||||| |||| ||||||||||| |||| ||||
Sbjct: 521 atcaaatccgaacggatcaaaagttcatgggcgtgtttg-atga 563
Score = 563 bits (1452), Expect = e-160
Identities = 327/366 (89%)
Strand = Plus / Plus
Query: 1269 gaaatgggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttgg 1328
|||| ||||||||||||||||| || |||||||||||| |||||||||||||||||
Sbjct: 1095 gaaa-gggattaacaaccctagtttttatctctacaaagaagaccaactcacaggctcac 1153
Query: 1329 aacaagcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcac 1388
||| ||| || |||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct: 1154 aacgagcattaagtcaagaagagatccaaaacaaaatagatttcatggaatttcttgcac 1213
Query: 1389 aaaacaacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgaga 1448
|||| || |||| |||||| |||||||||||| ||||||| ||||| |||| ||||||||
Sbjct: 1214 aaaataatgctaaattagacaacttgagcgagaaagagaaggaaaaattccgaactgaga 1273
Query: 1449 ttggaaatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattg 1508
|| | |||||||||||||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 1274 ttaaagatttccaaaaagactctaaggcttatttagacgccctagggaatgatcgtattg 1333
Query: 1509 cttttgtttctaaaaaagac-caaaagcatttagctttggttactgagtttggtaatggg 1567
|||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||
Sbjct: 1334 cttttgtttctaaaaaagacacaaaa-cattcagctttaattactgagtttggtaatggg 1392
Query: 1568 gaattgagctatactctcaaagattatgggaaaaaacaagatagagctttagatagggag 1627
|| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1393 gatttgagctacactctcaaagattatgggaaaaaagcagataaagctttagatagggag 1452
Query: 1628 acaaaa 1633
| ||||
Sbjct: 1453 a-aaaa 1457
Score = 460 bits (1187), Expect = e-129
Identities = 245/262 (94%)
Strand = Plus / Plus
Query: 3016 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3075
||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 3051 agcgaaactagacaattacgctactaacagccacatacgcattaatagcaatatcaaaaa 3110
Query: 3076 tggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggctcaa 3135
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3111 tggagcaatcaatgaaaaagcgaccggcatgctaacgcaaaaaaaccctgagtggctcaa 3170
Query: 3136 gcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggttatga 3195
||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct: 3171 gctcgtgaatgataagatagttgcgcataatgtaggaagcgttcctttgtcagagtatga 3230
Query: 3196 taaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttccac 3255
||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 3231 taaaattggcttcaaccagaagaatatgaaagattattctgattcgttcaagttttccac 3290
Query: 3256 caagttgagcaatgccgtaaaa 3277
|||||||| |||||| ||||||
Sbjct: 3291 caagttgaacaatgctgtaaaa 3312
Score = 418 bits (1077), Expect = e-117
Identities = 225/244 (92%)
Strand = Plus / Plus
Query: 2348 tcggtgaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgca 2407
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2173 tcggtgaaagatttaggtatcaatccagaatggatttcaaaagttgaaaaccttaatgca 2232
Query: 2408 gctttgaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaa 2467
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2233 gctttgaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacgcaagcaaaa 2292
Query: 2468 agcgaccttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagtt 2527
|||||||||||||||||| |||| |||||| ||||||||||| || ||||||||||||||
Sbjct: 2293 agcgaccttgaaaattccgttaaagatgtgatcatcaatcaaaaggtaacggataaagtt 2352
Query: 2528 gacaatctcaatcaggctgtattaagggctaaagcgataggcgattttagtggggtagag 2587
|| ||||||||||| || |||| | ||||||||| | || ||||| ||| ||||||||
Sbjct: 2353 gataatctcaatcaagcggtatcagtggctaaagcaacgggtgatttcagtagggtagag 2412
Query: 2588 caag 2591
||||
Sbjct: 2413 caag 2416
Score = 377 bits (972), Expect = e-104
Identities = 224/261 (86%)
Strand = Plus / Plus
Query: 776 ttgaaagagaggcaagaagcacaaaacaatggagagcc---tgttggggattggcttgat 832
|||||||| |||||||||||| |||| ||||||||||| || |||||||||| | |||
Sbjct: 568 ttgaaagaaaggcaagaagcagaaaaaaatggagagcctactggtggggattggttggat 627
Query: 833 atttttttatcgtttgtatttaacaaagaacaatcttctgatctcaaagaaacgctcaat 892
|||||| | || ||| ||||| ||||| |||||||||||||| |||||||| | |||||
Sbjct: 628 atttttctctcatttatatttgacaaaaaacaatcttctgatgtcaaagaagcaatcaat 687
Query: 893 caagagccaaggcctcatgttgaacaaaatgtagcctctacccccacccacatacaaggc 952
||||| ||| || ||||| ||| | || ||||| ||||| ||||| |||||||||||
Sbjct: 688 caagaaccagttccccatgtccaaccagatatagccactaccaccaccgacatacaaggc 747
Query: 953 ttaccgcctgaagctagggatttgcttgatgaaaggggtgatttttctaaattcactctt 1012
||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 748 ttaccgcctgaagctagagatttacttgatgaaaggggtaatttttctaaattcactctt 807
Query: 1013 ggtgatatggaaatgttggat 1033
|| |||||||||||||| |||
Sbjct: 808 ggcgatatggaaatgttagat 828
Score = 375 bits (969), Expect = e-104
Identities = 205/227 (90%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
||||||||||| || ||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 859 tacaagttcaatcaattattgattcacaataacgctctgtcttctgtgttaatggggagt 918
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 919 cataatggcatagaacctgaaaaagtttcattgttgtatgggggcaatggtggtcctgga 978
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 979 gctaggcatgattggaacgccaccgttggttataaagaccaacaaggcaacaatgtggct 1038
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagc 1260
||| | || |||| |||| | ||||||||||| || |||||||||||
Sbjct: 1039 acaataattaatgtgcatatgaaaaacggcagtggcttagtcatagc 1085
Score = 336 bits (866), Expect = 3e-92
Identities = 192/225 (85%)
Strand = Plus / Plus
Query: 2782 ccctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggctttcaagggagca 2841
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 2826 ccctttgaaaaggcatgataaagttgatgatctcagtaaggtagggctttcaaggaatca 2885
Query: 2842 agaattgaatgagaaaattggcaatctcaatcaggcagtgtcagaagctaaagcaggttc 2901
||||||| | ||||||||| |||||||||||| || || |||||||||||||||||||
Sbjct: 2886 agaattggctcagaaaattgacaatctcaatcaagcggtatcagaagctaaagcaggttt 2945
Query: 2902 ttttggcaacctagaacaaatgatggatggactcaaagattctacaaaaaagaatgttgt 2961
||||||||| ||||| |||| ||| || |||||||||||||||||| | ||| |
Sbjct: 2946 ttttggcaatctagagcaaacgatagacaagctcaaagattctacaaaacacaatcccat 3005
Query: 2962 gaatctatggtttgaaggtgcaagaaaagtgcctattagtttgcc 3006
|||||||||| ||||| |||||| |||||| ||| ||||||| |
Sbjct: 3006 gaatctatgggttgaaagtgcaaaaaaagtacctgctagtttgtc 3050
Score = 56 bits (144), Expect = 4e-08
Identities = 30/32 (94%)
Strand = Plus / Plus
Query: 3369 ttaatacaaaaagtggtttccagaaatcttaa 3400
||||||||||| |||||||||| |||||||||
Sbjct: 3413 ttaatacaaaaggtggtttccaaaaatcttaa 3444
Score = 39 bits (101), Expect = 5e-03
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 2635 tcaaaaaaatgaaagtttcaat 2656
|||||||||||||||| |||||
Sbjct: 2466 tcaaaaaaatgaaagtctcaat 2487
Score = 30 bits (78), Expect = 2e+00
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccat 17
||| |||||||||||||
Sbjct: 1 atgactaacgaaaccat 17
Score = 29 bits (76), Expect = 5e+00
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 2750 gaacccatttacgct 2764
|||||||||||||||
Sbjct: 2725 gaacccatttacgct 2739
Score = 23 bits (59), Expect = 4e+02
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 2702 tatgctaaagtt 2713
||||||||||||
Sbjct: 2677 tatgctaaagtt 2688 |