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Homologs of lipA gene of NC_003112_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) NMBH4476_0082
( YP_005898815.1 )

capsule polysaccharide modification protein LipA

NC_017516
(Neisseria meningitidis H44/76)

0.0

100

2) lipA
( NP_273145.1 )

capsule polysaccharide modification protein

NC_003112
(Neisseria meningitidis MC58)

0.0

100

3) NMBG2136_0083
( YP_005893009.1 )

capsule polysaccharide modification protein LipA

NC_017513
(Neisseria meningitidis G2136)

0.0

4) NMBM01240355_0084
( YP_005900778.1 )

capsule polysaccharide modification protein LipA

NC_017517
(Neisseria meningitidis M01-240355)

0.0

5) lipA
( YP_974205.1 )

capsule polysaccharide modification protein

NC_008767
(Neisseria meningitidis FAM18)

0.0

6) NMBM04240196_0091
( YP_005896877.1 )

capsule polysaccharide modification protein LipA

NC_017515
(Neisseria meningitidis M04-240196)

0.0

7) lipA
( YP_001598266.1 )

capsule polysaccharide modification protein

NC_010120
(Neisseria meningitidis 053442)

0.0

8) lipA
( YP_005877677.1 )

polysialic acid capsule modification protein LipA

NC_017501
(Neisseria meningitidis 8013)

0.0

9) NMA0186
( YP_002341732.1 )

capsule polysaccharide modification protein

NC_003116
(Neisseria meningitidis Z2491)

0.0

10) lipA
( YP_005892886.1 )

polysialic acid capsule modification protein LipA

NC_017512
(Neisseria meningitidis WUE 2594)

0.0

11) NMBB_0086
( YP_005881752.1 )

capsule polysaccharide modification protein

NC_017505
(Neisseria meningitidis alpha710)

0.0

12) NMBNZ0533_0087
( YP_005902749.1 )

capsule polysaccharide modification protein LipA

NC_017518
(Neisseria meningitidis NZ-05/33)

0.0

13) NMBM01240149_0081
( YP_005894932.1 )

capsule polysaccharide modification protein lipA

NC_017514
(Neisseria meningitidis M01-240149)

0.0

14) lipA2
( YP_001652723.1 )

capsule polysaccharide modification protein

NC_010278
(Actinobacillus pleuropneumoniae JL03)

0.0

15) APP7_1756
( YP_001969550.1 )

capsule polysaccharide modification protein LipA

NC_010939
(Actinobacillus pleuropneumoniae AP76)

0.0

16) kpsC
( YP_001054384.1 )

capsule polysaccharide modification protein LipA

NC_009053
(Actinobacillus pleuropneumoniae L20)

0.0

17) J450_06985
( YP_008220405.1 )

capsule polysaccharide transporter

NC_021738
(Mannheimia haemolytica D171)

0.0

18) F382_08125
( YP_008234462.1 )

capsule polysaccharide transporter

NC_021743
(Mannheimia haemolytica D153)

0.0

19) phyA
( YP_007882364.1 )

capsule polysaccharide modification protein PhyA

NC_021082
(Mannheimia haemolytica M42548)

0.0

20) D650_740
( YP_007664856.1 )

Capsule polysaccharide modification protein LipA

NC_020833
(Mannheimia haemolytica USDA-ARS-USMARC-183)

0.0

21) N220_13920
( YP_008340169.1 )

capsule polysaccharide transporter

NC_021883
(Mannheimia haemolytica USMARC_2286)

0.0

22) ASU2_09035
( YP_006818176.1 )

capsule polysaccharide modification protein

NC_018690
(Actinobacillus suis H91-0380)

0.0

23) J451_07850
( YP_008222912.1 )

capsule polysaccharide transporter

NC_021739
(Mannheimia haemolytica D174)

0.0

24) hcsA'
( YP_005179191.1 )

capsule biosynthesis protein HcsA

NC_016809
(Haemophilus influenzae 10810)

0.0

25) hcsA'
( YP_005179206.1 )

capsule biosynthesis protein HcsA

NC_016809
(Haemophilus influenzae 10810)

0.0

26) hcsA
( YP_008543805.1 )

HcsA

NC_022356
(Haemophilus influenzae KR494)

0.0

27) WQG_2620
( YP_007547337.1 )

Capsule polysaccharide modification protein LipA

NC_020515
(Bibersteinia trehalosi USDA-ARS-USMARC-192)

0.0

28) phyA
( NP_245710.1 )

protein PhyA

NC_002663
(Pasteurella multocida Pm70)

1e-178

29) NT08PM_0490
( YP_006239392.1 )

protein PhyA

NC_017764
(Pasteurella multocida 3480)

2e-178

30) phyA
( YP_005176723.1 )

protein PhyA

NC_016808
(Pasteurella multocida 36950)

2e-177

31) phyA
( YP_005363262.1 )

PhyA,Capsule polysaccharide export protein

NC_017027
(Pasteurella multocida HN06)

3e-174

32) Entcl_3735
( YP_003943260.1 )

capsular polysaccharide biosynthesis protein

NC_014618
(Enterobacter cloacae SCF1)

9e-143

33) Q7S_06565
( YP_005401124.1 )

capsular polysaccharide biosynthesis protein

NC_017047
(Rahnella aquatilis HX2)

2e-136

34) Rahaq_1360
( YP_004212110.1 )

capsular polysaccharide biosynthesis protein

NC_015061
(Rahnella sp. Y9602)

2e-136

35) wcbA
( YP_001630919.1 )

protein involved in capsular polysaccharide export

NC_010170
(Bordetella petrii DSM 12804)

8e-131

36) Cpha266_2331
( YP_912745.1 )

capsule polysaccharide biosynthesis

NC_008639
(Chlorobium phaeobacteroides DSM 266)

8e-131

37) kpsC
( YP_005801781.1 )

capsule polysaccharide export protein kpsC

NC_017390
(Erwinia pyrifoliae DSM 12163)

3e-130

38) kpsC
( YP_002648006.1 )

KpsC protein

NC_012214
(Erwinia pyrifoliae Ep1/96)

3e-130

39) kpsC
( YP_005816680.1 )

KpsC protein

NC_017445
(Erwinia sp. Ejp617)

8e-130

40) kpsC
( YP_003539605.1 )

capsule polysaccharide export protein

NC_013971
(Erwinia amylovora ATCC 49946)

3e-128

41) kpsC
( YP_003532003.1 )

capsule polysaccharide export protein kpsc

NC_013961
(Erwinia amylovora CFBP1430)

3e-128

42) LF82_465
( YP_002557800.1 )

KpsC protein

NC_011993
(Escherichia coli LF82)

1e-127

43) NRG857_14605
( YP_006121265.1 )

Capsule polysaccharide export protein

NC_017634
(Escherichia coli NRG 857C)

1e-127

44) kpsC
( YP_587864.1 )

capsule polysaccharide modification protein

NC_007974
(Cupriavidus metallidurans CH34)

1e-127

45) ECSF_2775
( YP_003350765.1 )

capsule polysaccharide export protein KpsC

NC_013654
(Escherichia coli SE15)

2e-127

46) kpsC
( YP_006097527.1 )

capsule polysaccharide export protein

NC_017626
(Escherichia coli 042)

2e-127

47) kpsC
( YP_854335.1 )

capsule polysaccharide export protein KpsC

NC_008563
(Escherichia coli APEC O1)

2e-127

48) kpsC
( YP_006145484.1 )

capsule polysaccharide export protein

NC_017646
(Escherichia coli CE10)

2e-127

49) kpsC
( YP_002409347.1 )

capsule polysaccharide export protein

NC_011750
(Escherichia coli IAI39)

2e-127

50) ECOK1_3363
( YP_006102478.1 )

capsular polysaccharide biosynthesis protein

NC_017628
(Escherichia coli IHE3034)

2e-127

51) ECOPMV1_03246
( YP_008573021.1 )

Capsule polysaccharide biosynthesis protein

NC_022370
(Escherichia coli PMV-1)

2e-127

52) kpsC
( YP_002392933.1 )

Capsule polysaccharide export protein

NC_011742
(Escherichia coli S88)

2e-127

53) UM146_01650
( YP_006109269.1 )

Capsule polysaccharide export protein

NC_017632
(Escherichia coli UM146)

2e-127

54) kpsC
( YP_542344.1 )

capsule polysaccharide export protein KpsC

NC_007946
(Escherichia coli UTI89)

2e-127

55) kpsC
( YP_002399452.1 )

Capsule polysaccharide export protein

NC_011745
(Escherichia coli ED1a)

3e-127

56) kpsC
( YP_001745206.1 )

polysialic acid capsule polysaccharide export protein KpsC

NC_010498
(Escherichia coli SMS-3-5)

1e-126

57) kpsC
( YP_002414088.1 )

Capsule polysaccharide export protein

NC_011751
(Escherichia coli UMN026)

1e-126

58) kpsC
( YP_003000532.1 )

kpsC

NC_012892
(Escherichia coli BL21(DE3))

2e-126

59) ECD_02818
( YP_003055394.1 )

capsule polysaccharide export protein KpsC

NC_012971
(Escherichia coli BL21(DE3))

2e-126

60) ECB_02818
( YP_003046005.1 )

Capsule polysaccharide export protein KpsC

NC_012967
(Escherichia coli REL606)

2e-126

61) kpsC
( YP_006107343.1 )

polysialic acid capsule polysaccharide export protein KpsC

NC_017631
(Escherichia coli ABU 83972)

9e-126

62) kpsC
( YP_006155450.1 )

KpsC protein

NC_017652
(Escherichia coli clone D i14)

9e-126

63) kpsC
( YP_006150531.1 )

KpsC protein

NC_017651
(Escherichia coli clone D i2)

9e-126

64) kspC
( YP_006140145.1 )

Capsular polysaccharide export system protein

NC_017644
(Escherichia coli NA114)

9e-126

65) kpsC
( NP_755565.1 )

KpsC protein

NC_004431
(Escherichia coli CFT073)

2e-125

66) kpsC
( YP_003208976.1 )

capsule polysaccharide export protein kpsC

NC_013282
(Cronobacter turicensis z3032)

3e-124

67) ESA_03352
( YP_001439409.1 )

hypothetical protein

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

9e-124

68) kpsC
( YP_006344413.1 )

capsule polysaccharide export protein KpsC

NC_017933
(Cronobacter sakazakii ES15)

4e-123

69) Hoch_5948
( YP_003270316.1 )

capsule polysaccharide biosynthesis protein

NC_013440
(Haliangium ochraceum DSM 14365)

6e-122

70) CtCNB1_2753
( YP_003278795.1 )

capsule polysaccharide export protein kpsS

NC_013446
(Comamonas testosteroni CNB-1)

2e-116

71) Alvin_0211
( YP_003442210.1 )

capsule polysaccharide biosynthesis protein

NC_013851
(Allochromatium vinosum DSM 180)

7e-115

72) Dvul_2595
( YP_968037.1 )

capsule polysaccharide biosynthesis

NC_008751
(Desulfovibrio vulgaris DP4)

4e-114

73) Hneap_1504
( YP_003263382.1 )

capsule polysaccharide biosynthesis protein

NC_013422
(Halothiobacillus neapolitanus c2)

2e-112

74) Meso_2755
( YP_675297.1 )

capsule polysaccharide biosynthesis

NC_008254
(Chelativorans sp. BNC1)

1e-109

75) BN865_07210
( YP_008473393.1 )

Capsular polysaccharide biosynthesis/export periplasmic protein WcbA; Capsular polysaccharide export system protein KpsC

NC_022132
(Campylobacter coli 76339)

2e-108

76) Tgr7_1314
( YP_002513386.1 )

capsular polysaccharide biosynthesis protein

NC_011901
(Thioalkalivibrio sulfidophilus HL-EbGR7)

2e-107

77) GU3_14830
( YP_005093469.1 )

capsule export protein KpsC

NC_016745
(Oceanimonas sp. GK1)

3e-106

78) G157_01775
( YP_008533079.1 )

capsular polysaccharide export protein KpsC

NC_022347
(Campylobacter coli CVM N29710)

1e-105

79) kpsC
( YP_001001069.1 )

capsule polysaccharide export protein KpsC

NC_008787
(Campylobacter jejuni 81-176)

1e-104

80) lipA
( YP_003897480.1 )

capsule polysaccharide modification protein

NC_014532
(Halomonas elongata DSM 2581)

2e-102

81) Pput_3912
( YP_001269220.1 )

capsule polysaccharide biosynthesis protein

NC_009512
(Pseudomonas putida F1)

3e-102

82) kpsC
( YP_002574929.1 )

capsular polysaccharide export protein KpsC

NC_012039
(Campylobacter lari RM2100)

4e-101

83) wcbA
( YP_006966807.1 )

capsular polysaccharide export protein

NC_019382
(Bordetella bronchiseptica 253)

3e-99

84) wcbA
( NP_889459.1 )

capsular polysaccharide export protein

NC_002927
(Bordetella bronchiseptica RB50)

3e-99

85) wcbA
( YP_005589755.1 )

capsular polysaccharide export protein

NC_017223
(Bordetella pertussis CS)

3e-99

86) wcbA
( NP_880359.1 )

capsular polysaccharide export protein

NC_002929
(Bordetella pertussis Tohama I)

3e-99

87) wcbA
( YP_006626407.1 )

capsular polysaccharide export protein

NC_018518
(Bordetella pertussis 18323)

1e-98

88) wcbA
( NP_885145.1 )

capsular polysaccharide export protein

NC_002928
(Bordetella parapertussis 12822)

3e-98

89) SUN_1712
( YP_001359019.1 )

capsule polysaccharide export protein

NC_009663
(Sulfurovum sp. NBC37-1)

1e-97

90) wcbA
( YP_006900458.1 )

capsular polysaccharide export protein

NC_018829
(Bordetella bronchiseptica MO149)

6e-96

91) PPUBIRD1_3815
( YP_005931607.1 )

capsular polysaccharide biosynthesis protein

NC_017530
(Pseudomonas putida BIRD-1)

7e-92

92) kpsC
( YP_166993.1 )

capsular polysaccharide export protein KpsC

NC_003911
(Ruegeria pomeroyi DSS-3)

2e-86

• Sequence Alignments

1) NMBH4476_0082 in NC_017516


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score = 1085 bits (4115),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 704/704 (100%), Positives = 704/704 (100%), Gaps = 0/704 (0%)

Query  1    MFLFSDGLQSinnnnrrkrivknAYIPSRGIRKIPHLSTLLPEFHICKDGKEAEAVVGWG  60
            MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHICKDGKEAEAVVGWG
Sbjct  1    MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHICKDGKEAEAVVGWG  60

Query  61   LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE  120
            LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE
Sbjct  61   LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE  120

Query  121  QLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF  180
            QLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF
Sbjct  121  QLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF  180

Query  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL  240
            GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL
Sbjct  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL  240

Query  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ  300
            AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ
Sbjct  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ  300

Query  301  TQRRATRNllqlfaaaylqySRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360
            TQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM
Sbjct  301  TQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360

Query  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420
            SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL
Sbjct  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420

Query  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILqnqnfddqdfqTALKL  480
            LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL
Sbjct  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL  480

Query  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540
            QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE
Sbjct  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540

Query  541  RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600
            RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG
Sbjct  541  RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600

Query  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660
            FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ
Sbjct  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660

Query  661  AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704
            AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK
Sbjct  661  AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704

2) lipA in NC_003112


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score = 1085 bits (4115),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 704/704 (100%), Positives = 704/704 (100%), Gaps = 0/704 (0%)

Query  1    MFLFSDGLQSinnnnrrkrivknAYIPSRGIRKIPHLSTLLPEFHICKDGKEAEAVVGWG  60
            MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHICKDGKEAEAVVGWG
Sbjct  1    MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHICKDGKEAEAVVGWG  60

Query  61   LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE  120
            LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE
Sbjct  61   LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE  120

Query  121  QLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF  180
            QLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF
Sbjct  121  QLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF  180

Query  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL  240
            GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL
Sbjct  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL  240

Query  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ  300
            AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ
Sbjct  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ  300

Query  301  TQRRATRNllqlfaaaylqySRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360
            TQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM
Sbjct  301  TQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360

Query  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420
            SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL
Sbjct  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420

Query  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILqnqnfddqdfqTALKL  480
            LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL
Sbjct  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL  480

Query  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540
            QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE
Sbjct  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540

Query  541  RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600
            RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG
Sbjct  541  RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600

Query  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660
            FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ
Sbjct  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660

Query  661  AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704
            AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK
Sbjct  661  AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704

3) NMBG2136_0083 in NC_017513


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score = 1079 bits (4092),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 700/704 (99%), Positives = 702/704 (99%), Gaps = 0/704 (0%)

Query  1    MFLFSDGLQSinnnnrrkrivknAYIPSRGIRKIPHLSTLLPEFHIYKDGKGAEAVIGWG  60
            MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHI KDGK AEAV+GWG
Sbjct  1    MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHICKDGKEAEAVVGWG  60

Query  61   LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE  120
            LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE
Sbjct  61   LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE  120

Query  121  QLILAADTMPSETLAQAQQTMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF  180
            QLILAADTMPSETLAQAQQ+MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF
Sbjct  121  QLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF  180

Query  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL  240
            GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL
Sbjct  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL  240

Query  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ  300
            AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ
Sbjct  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ  300

Query  301  TQRRATRNllqlfaaaylqySRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360
            TQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM
Sbjct  301  TQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360

Query  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420
            SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL
Sbjct  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420

Query  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILqnqnfddqdfqTALKL  480
            LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL
Sbjct  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL  480

Query  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540
            QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE
Sbjct  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540

Query  541  RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600
            RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG
Sbjct  541  RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600

Query  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660
            FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ
Sbjct  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660

Query  661  AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704
            AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK
Sbjct  661  AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704

4) NMBM01240355_0084 in NC_017517


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score = 1077 bits (4085),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 698/704 (99%), Positives = 702/704 (99%), Gaps = 0/704 (0%)

Query  1    MFLFSDGLQSinnnnrrkrivknAYIPSRGIRKIPHLSTLLPEFHIYKDGKGAEAVVGWG  60
            MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHI KDGK AEAVVGWG
Sbjct  1    MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHICKDGKEAEAVVGWG  60

Query  61   LRPTTHKARAFATEHQLPFIALEDGFLRSLGLGVSGYPPYSIVYDDIGIYYDTTRPSRLE  120
            LRPTTHKARAFA+EHQLPFIALEDGFLRSLGLGV+GYPPYSIVYDDIGIYYDTTRPSRLE
Sbjct  61   LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE  120

Query  121  QLILAADTMPSETLAQAQQTMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF  180
            QLILAADTMPSETLAQAQQ+MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF
Sbjct  121  QLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF  180

Query  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL  240
            GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL
Sbjct  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL  240

Query  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ  300
            AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ
Sbjct  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ  300

Query  301  TQRRATRNllqlfaaaylqySRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360
            TQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM
Sbjct  301  TQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360

Query  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420
            SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL
Sbjct  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420

Query  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILqnqnfddqdfqTALKL  480
            LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL
Sbjct  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL  480

Query  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPKIYRNLDLLRTVRE  540
            QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSP+IYRNLDLLRTVRE
Sbjct  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540

Query  541  RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600
            RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG
Sbjct  541  RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600

Query  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660
            FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ
Sbjct  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660

Query  661  AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704
            AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK
Sbjct  661  AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704

5) lipA in NC_008767


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score = 1075 bits (4074),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 695/704 (99%), Positives = 701/704 (99%), Gaps = 0/704 (0%)

Query  1    MFLFSDGLQSinnnnrrkrivknAYIPSRGIRKIPHLFTLLPEFHICKDGKGAEAVIGWG  60
            MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHL TLLPEFHICKDGK AEAV+GWG
Sbjct  1    MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHICKDGKEAEAVVGWG  60

Query  61   LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE  120
            LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE
Sbjct  61   LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE  120

Query  121  QLILAADTMPSETLAQAQQTMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF  180
            QLILAADTMPSETLAQAQQ+MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF
Sbjct  121  QLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF  180

Query  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL  240
            GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL
Sbjct  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL  240

Query  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ  300
            AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ
Sbjct  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ  300

Query  301  TQRRATRNllqlfaaaylqySRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360
            TQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM
Sbjct  301  TQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360

Query  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420
            SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL
Sbjct  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420

Query  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILqnqnfddqdfqTALKL  480
            LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL
Sbjct  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL  480

Query  481  QKMLTENHISKYNVGNSDFSAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540
            QKMLTENHISKYNVG+SDF+APSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE
Sbjct  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540

Query  541  RHPDAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600
            R+P+AYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG
Sbjct  541  RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600

Query  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660
            FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ
Sbjct  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660

Query  661  AINAETAAQILIRQKNMQKNNNGLHRGYFAKKLGKIKQLYRSFK  704
            AINAETAAQILIRQKNMQKNNNGLHRG FAKKLGKIKQLYRSFK
Sbjct  661  AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704

6) NMBM04240196_0091 in NC_017515


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score = 1069 bits (4051),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 691/704 (99%), Positives = 696/704 (99%), Gaps = 0/704 (0%)

Query  1    MFLFSDGLQSinnnnrrkrivknAYIPSRGIRKIPHLFTLLPEFHICKDGKGAEAVIGWG  60
            MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHL TLLPEFHICKDGK AEAV+GWG
Sbjct  1    MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHICKDGKEAEAVVGWG  60

Query  61   LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE  120
            LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE
Sbjct  61   LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE  120

Query  121  QLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF  180
            QLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF
Sbjct  121  QLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF  180

Query  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLVQQHRVHLL  240
            GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQL QQHRVHLL
Sbjct  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL  240

Query  241  AEDINPISLLQNIDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPKIDSLVQ  300
            AEDINPISLLQN+DKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHP I+ LVQ
Sbjct  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ  300

Query  301  TQRRAPRNllqlfaaaylqySRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360
            TQRRA RNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM
Sbjct  301  TQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360

Query  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLAGVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420
            SLWKRAVAKPFFNVPSCRLKFISSTQKLA VKLSDDARILAWGNGKEAIVRFAEQHHIPL
Sbjct  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420

Query  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMGIYFNAEAPSRLEHILqnqnfddqdfqTALKL  480
            LRMEDGFIRSVGLGSNLVPPLSLVTDDM+IYFNAE+PSRLE ILQNQNFDDQDFQTALKL
Sbjct  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL  480

Query  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540
            QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE
Sbjct  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540

Query  541  RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600
            RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG
Sbjct  541  RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600

Query  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660
            FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ
Sbjct  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660

Query  661  AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704
            AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK
Sbjct  661  AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704

7) lipA in NC_010120


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score = 1066 bits (4043),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 689/704 (98%), Positives = 696/704 (99%), Gaps = 0/704 (0%)

Query  1    MFLFSDGLQSinnnnrrkrivknAYIPSRGIRKIPHLSTLLPEFHIYKDGKGAEAVVGWG  60
            MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHI KDGK AEAVVGWG
Sbjct  1    MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHICKDGKEAEAVVGWG  60

Query  61   LRPTTHKARAFATEHQLPFIALEDGFLRSLGLGVSGYPPYSIVYDDIGIYYDTTRPSRLE  120
            LRPTTHKARAFA+EHQLPFIALEDGFLRSLGLGV+GYPPYSIVYDDIGIYYDTTRPSRLE
Sbjct  61   LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE  120

Query  121  QLILAADTMPSETLAQARQAMDFILQHHLSKYNHAPELSDDHPLRSPSKSETVLIIDQTF  180
            QLILAADTMPSETLAQA+QAMDFILQHHLSKYNHAPELSDDHPLRSPSK+ETVLIIDQTF
Sbjct  121  QLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF  180

Query  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLVQQHRVHLL  240
            GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQL QQHRVHLL
Sbjct  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL  240

Query  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPKIGSLIQ  300
            AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHP I  L+Q
Sbjct  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ  300

Query  301  TQRRAPRNllqlfaaaylqySRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360
            TQRRA RNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM
Sbjct  301  TQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360

Query  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420
            SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL
Sbjct  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420

Query  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILqnqnfddqdfqTALKL  480
            LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL
Sbjct  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL  480

Query  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540
            QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE
Sbjct  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540

Query  541  RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQTDILTCLQYADEVHTMTSLTG  600
            RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQ+DILTCLQYADE+HTMTSLTG
Sbjct  541  RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600

Query  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660
            FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ
Sbjct  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660

Query  661  AINAETAAQILIRQKNMQKNNNGLHRGYFAKKLGKIKQLYRSFK  704
            AINAETAAQILIRQKNMQKNNNGLHRG FAKKLGKIKQLYRSFK
Sbjct  661  AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704

8) lipA in NC_017501


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score = 1065 bits (4038),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 690/704 (99%), Positives = 696/704 (99%), Gaps = 0/704 (0%)

Query  1    MFLFSDGLQSinnnnrrkrivknAYIPSRGIRKIPHLSTLLPEFHIYKDGKGAEAVVGWG  60
            MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHI KDGK AEAVVGWG
Sbjct  1    MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHICKDGKEAEAVVGWG  60

Query  61   LRPTTHKARAFATEHQLPFIALEDGFLRSLGLGVSGYPPYSIVYDDIGIYYDTTRPSRLE  120
            LRPTTHKARAFA+EHQLPFIALEDGFLRSLGLGV+GYPPYSIVYDDIGIYYDTTRPSRLE
Sbjct  61   LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE  120

Query  121  QLILAADTMPSETLAQARQAMDFILQHHLSKYNHAPELSDDHPLRSPSKSETVLIIDQTF  180
            QLILAADTMPSETLAQA+QAMDFILQHHLSKYNHAPELSDDHPLRSPSK+ETVLIIDQTF
Sbjct  121  QLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF  180

Query  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLVQQHRVHLL  240
            GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQL QQHRVHLL
Sbjct  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL  240

Query  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPKIGSLIQ  300
            AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHP I  L+Q
Sbjct  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ  300

Query  301  TQRRAPRNllqlfaaaylqySRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360
            TQRRA RNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM
Sbjct  301  TQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360

Query  361  SLWKRAVAKPFFNVPSCHLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420
            SLWKRAVAKPFFNVPSC+LKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL
Sbjct  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420

Query  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILqnqnfddqdfqTALKL  480
            LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL
Sbjct  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL  480

Query  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540
            QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE
Sbjct  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540

Query  541  RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600
            RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG
Sbjct  541  RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600

Query  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660
            FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ
Sbjct  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660

Query  661  AINAETAAQILIRQKNMQKNNNGLHRGYFAKKLGKIKQLYRSFK  704
            AINAETAAQILIRQKNMQKNNNGLHRG FAKKLGKIKQLYRSFK
Sbjct  661  AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704

9) NMA0186 in NC_003116


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score = 1065 bits (4037),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 688/704 (98%), Positives = 695/704 (99%), Gaps = 0/704 (0%)

Query  1    MFLFSDGLQSinnnnrrkrivknAYIPSRGIRKIPHLSTLLPEFHIYKDGKGAEAVVGWG  60
            MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHI KDGK AEAVVGWG
Sbjct  1    MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHICKDGKEAEAVVGWG  60

Query  61   LRPTTHKARAFATEHQLPFIALEDGFLRSLGLGVSGYPPYSIVYDDIGIYYDTTRPSRLE  120
            LRPTTHKARAFA+EHQLPFIALEDGFLRSLGLGV+GYPPYSIVYDDIGIYYDTTRPSRLE
Sbjct  61   LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE  120

Query  121  QLILAADTMPSETLAQARQAMDFILQHHLSKYNHAPELSDDHPLRSPSKSETVLIIDQTF  180
            QLILAADTMPSETLAQA+QAMDFILQHHLSKYNHAPELSDDHPLRSPSK+ETVLIIDQTF
Sbjct  121  QLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF  180

Query  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLVQQHRVHLL  240
            GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQL QQHRVHLL
Sbjct  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL  240

Query  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPKIGSLIQ  300
            AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHP I  L+Q
Sbjct  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ  300

Query  301  TQRRAPRNllqlfaaaylqySRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360
            TQRRA RNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM
Sbjct  301  TQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360

Query  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420
            SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL
Sbjct  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420

Query  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILqnqnfddqdfqTALKL  480
            LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL
Sbjct  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL  480

Query  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540
            QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE
Sbjct  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540

Query  541  RNPNAYIIYKPHPDVVSGNRIGHISPDDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600
            RNPNAYIIYKPHPDVVSGNRIGHISP+DAARYADQTAEQADILTCLQYADEIHTMTSLTG
Sbjct  541  RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600

Query  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLVAGTLIYYPDYIHPKTHQ  660
            FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQL+AGTLI YPDYIHP THQ
Sbjct  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660

Query  661  AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704
            AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK
Sbjct  661  AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704

10) lipA in NC_017512


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score = 1063 bits (4030),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 687/704 (98%), Positives = 695/704 (99%), Gaps = 0/704 (0%)

Query  1    MFLFSDGLQSinnnnrrkrivknAYIPSRGIRKIPHLSTLLPEFHIYKDGKGAEAVVGWG  60
            MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHI KDGK AEAVVGWG
Sbjct  1    MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHICKDGKEAEAVVGWG  60

Query  61   LRPTTHKARAFATEHQLPFIALEDGFLRSLGLGVSGYPPYSIVYDDIGIYYDTTRPSRLE  120
            LRPTTHKARAFA+EHQLPFIALEDGFLRSLGLGV+GYPPYSIVYDDIGIYYDTTRPSRLE
Sbjct  61   LRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLE  120

Query  121  QLILAADTIPSETLAQARQAMDFILQHHLSKYNHAPELSDDHPLRSPSKSETVLIIDQTF  180
            QLILAADT+PSETLAQA+QAMDFILQHHLSKYNHAPELSDDHPLRSPSK+ETVLIIDQTF
Sbjct  121  QLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTF  180

Query  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLVQQHRVHLL  240
            GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQL QQHRVHLL
Sbjct  181  GDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL  240

Query  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPKIGSLIQ  300
            AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHP I  L+Q
Sbjct  241  AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQ  300

Query  301  TQRRAPRNllqlfaaaylqySRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360
            TQRRA RNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM
Sbjct  301  TQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGM  360

Query  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420
            SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL
Sbjct  361  SLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPL  420

Query  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILqnqnfddqdfqTALKL  480
            LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL
Sbjct  421  LRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL  480

Query  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540
            QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE
Sbjct  481  QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRE  540

Query  541  RNPNAYIIYKPHPDVVSGNRIGHISPDDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600
            RNPNAYIIYKPHPDVVSGNRIGHISP+DAARYADQTAEQADILTCLQYADEIHTMTSLTG
Sbjct  541  RNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTG  600

Query  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLVAGTLIYYPDYIHPKTHQ  660
            FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQL+AGTLI YPDYIHP THQ
Sbjct  601  FEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQ  660

Query  661  AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704
            AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK
Sbjct  661  AINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704

11) NMBB_0086 in NC_017505


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  960 bits (3637),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 613/683 (90%), Positives = 646/683 (95%), Gaps = 6/683 (0%)

Query  4    AYIPLRSFGIRKIPNITQFLPEYSLNKTVFNAQTIIGWGLRPTTHQARAFAQSHGLPFVA  63
            AYIP R  GIRKIP+++ +LPE+ + K   +A++++GWGLRPTTH+ARAFA  H LPF+A
Sbjct  24   AYIPSR--GIRKIPHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIA  81

Query  64   LEDGFLRSLGLGVAGYPPFALVYDDIGIYYDTTRPSRLEQLILAAN-MPSEMLNQAQQAI  122
            LEDGFLRSLGLGVAGYPP+++VYDDIGIYYDTTRPSRLEQLILAA+ MPSE L QAQQA+
Sbjct  82   LEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAM  141

Query  123  DLILTHRLSKYNHALDFSDG--LVQDSK-NIVLVIDQTFGDMAIQYGGADEATFRQMFQT  179
            D+IL H+LSKYNHA ++SD+  L   SK + VL+IDQTFGDMAIQYGGAD +TF  MFQT
Sbjct  142  DFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQT  201

Query  180  ALAENPDAEIWVKTHPDVLSGKKQGYLTDLAQQPRVRLLAEDINPISLLQAVDKVYCVTS  239
            AL ENP+A+IWVKTHPDVL GKKQGYLT+LAQQ RV+LLAEDINPISLLQ VDKVYCVTS
Sbjct  202  ALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTS  261

Query  240  QMGFEALLCGKPLVTFGLPWYAGWGVSDDRHPKIDSLVQTQRRAPRNllqlfaaaylqyS  299
            QMGFEALLCGKPL TFGLPWYAGWGVSDDRHP I+ LVQTQRRA RNLLQLFAAAYLQYS
Sbjct  262  QMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQYS  321

Query  300  RYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKF  359
            RYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKF
Sbjct  322  RYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKF  381

Query  360  ISSTQKLAGVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPL  419
            ISSTQKLA VKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPL
Sbjct  382  ISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPL  441

Query  420  SLVTDDMSIYFNAETPSRLEYILqnqnfddqdfqTALKLQKMLTENHISKYNVGSSDFTA  479
            SLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTA
Sbjct  442  SLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTA  501

Query  480  PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRI  539
            PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRI
Sbjct  502  PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRI  561

Query  540  GHISPEDAARYADQTAEQTDILTCLQYADEVHTMTSLTGFEALLRGKKVSCYGLPFYAGW  599
            GHISPEDAARYADQTAEQ+DILTCLQYADE+HTMTSLTGFEALLRGKKVSCYGLPFYAGW
Sbjct  562  GHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGW  621

Query  600  GLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNN  659
            GLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNN
Sbjct  622  GLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNN  681

Query  660  NGLHRGYFAKKLGKIKQLYRSFK  682
            NGLHRG FAKKLGKIKQLYRSFK
Sbjct  682  NGLHRGCFAKKLGKIKQLYRSFK  704

12) NMBNZ0533_0087 in NC_017518


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  960 bits (3637),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 613/683 (90%), Positives = 646/683 (95%), Gaps = 6/683 (0%)

Query  4    AYIPLRSFGIRKIPNITQFLPEYSLNKTVFNAQTIIGWGLRPTTHQARAFAQSHGLPFVA  63
            AYIP R  GIRKIP+++ +LPE+ + K   +A++++GWGLRPTTH+ARAFA  H LPF+A
Sbjct  24   AYIPSR--GIRKIPHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIA  81

Query  64   LEDGFLRSLGLGVAGYPPFALVYDDIGIYYDTTRPSRLEQLILAAN-MPSEMLNQAQQAI  122
            LEDGFLRSLGLGVAGYPP+++VYDDIGIYYDTTRPSRLEQLILAA+ MPSE L QAQQA+
Sbjct  82   LEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAM  141

Query  123  DLILTHRLSKYNHALDFSDG--LVQDSK-NIVLVIDQTFGDMAIQYGGADEATFRQMFQT  179
            D+IL H+LSKYNHA ++SD+  L   SK + VL+IDQTFGDMAIQYGGAD +TF  MFQT
Sbjct  142  DFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQT  201

Query  180  ALAENPDAEIWVKTHPDVLSGKKQGYLTDLAQQPRVRLLAEDINPISLLQAVDKVYCVTS  239
            AL ENP+A+IWVKTHPDVL GKKQGYLT+LAQQ RV+LLAEDINPISLLQ VDKVYCVTS
Sbjct  202  ALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTS  261

Query  240  QMGFEALLCGKPLVTFGLPWYAGWGVSDDRHPKIDSLVQTQRRAPRNllqlfaaaylqyS  299
            QMGFEALLCGKPL TFGLPWYAGWGVSDDRHP I+ LVQTQRRA RNLLQLFAAAYLQYS
Sbjct  262  QMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQYS  321

Query  300  RYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKF  359
            RYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKF
Sbjct  322  RYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKF  381

Query  360  ISSTQKLAGVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPL  419
            ISSTQKLA VKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPL
Sbjct  382  ISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPL  441

Query  420  SLVTDDMSIYFNAETPSRLEYILqnqnfddqdfqTALKLQKMLTENHISKYNVGSSDFTA  479
            SLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTA
Sbjct  442  SLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTA  501

Query  480  PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRI  539
            PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRI
Sbjct  502  PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRI  561

Query  540  GHISPEDAARYADQTAEQTDILTCLQYADEVHTMTSLTGFEALLRGKKVSCYGLPFYAGW  599
            GHISPEDAARYADQTAEQ+DILTCLQYADE+HTMTSLTGFEALLRGKKVSCYGLPFYAGW
Sbjct  562  GHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGW  621

Query  600  GLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNN  659
            GLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNN
Sbjct  622  GLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNN  681

Query  660  NGLHRGYFAKKLGKIKQLYRSFK  682
            NGLHRG FAKKLGKIKQLYRSFK
Sbjct  682  NGLHRGCFAKKLGKIKQLYRSFK  704

13) NMBM01240149_0081 in NC_017514


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  897 bits (3399),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 577/623 (93%), Positives = 598/623 (96%), Gaps = 4/623 (0%)

Query  1    MEDGFLRSLGLGVAGYPPFALVYDDIGIYYDTTRPSRLEQLILAAN-MPSEMLNQAQQAI  59
            +EDGFLRSLGLGVAGYPP+++VYDDIGIYYDTTRPSRLEQLILAA+ MPSE L QAQQA+
Sbjct  82   LEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAM  141

Query  60   DLILTHRLSKYNHALDFSDG--LVQDSK-NIVLVIDQTFGDMAIQYGGADEATFRQMFQT  116
            D+IL H+LSKYNHA ++SD+  L   SK + VL+IDQTFGDMAIQYGGAD +TF  MFQT
Sbjct  142  DFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQT  201

Query  117  ALAENPDAEIWVKTHPDVLSGKKQGYLTDLAQQPRVRLLAEDINPISLLQAVDKVYCVTS  176
            AL ENP+A+IWVKTHPDVL GKKQGYLT+LAQQ RV+LLAEDINPISLLQ VDKVYCVTS
Sbjct  202  ALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTS  261

Query  177  QMGFEALLCGKPLVTFGLPWYAGWGVSDDRHPKIDSLVQTQRRAPRNllqlfaaaylqyS  236
            QMGFEALLCGKPL TFGLPWYAGWGVSDDRHP I+ LVQTQRRA RNLLQLFAAAYLQYS
Sbjct  262  QMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQYS  321

Query  237  RYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKF  296
            RYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKF
Sbjct  322  RYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKF  381

Query  297  ISSTQKLAGVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPL  356
            ISSTQKLA VKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPL
Sbjct  382  ISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPL  441

Query  357  SLVTDDMSIYFNAETPSRLEYILqnqnfddqdfqTALKLQKMLTENHISKYNVGSSDFTA  416
            SLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTA
Sbjct  442  SLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTA  501

Query  417  PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRI  476
            PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRI
Sbjct  502  PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRI  561

Query  477  GHISPEDAARYADQTAEQTDILTCLQYADEVHTMTSLTGFEALLRGKKVSCYGLPFYAGW  536
            GHISPEDAARYADQTAEQ+DILTCLQYADE+HTMTSLTGFEALLRGKKVSCYGLPFYAGW
Sbjct  562  GHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGW  621

Query  537  GLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNN  596
            GLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNN
Sbjct  622  GLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNN  681

Query  597  NGLHRGYFAKKLGKIKQLYRSFK  619
            NGLHRG FAKKLGKIKQLYRSFK
Sbjct  682  NGLHRGCFAKKLGKIKQLYRSFK  704


 Score =  119 bits (436),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 103/319 (33%), Positives = 192/319 (61%), Gaps = 24/319 (7%)

Query  278  WKRAVAKPFFNVPSCRLKFISSTQKLAGVKLSDDAR----ILAWG--NGKEAIVRFAEQH  331
            +KR V ++++   + R K+   +  L+   +  D++    +++WG     +    FA +H
Sbjct  17   RKRIVKNAYIPSRGIR-KIPHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEH  75

Query  332  HIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLE-YILqnqnfddqdfq  390
            ++P++ +EDGF+RS+GLG    PP S+V DD++IY+++  PSRLE  IL  +    + + 
Sbjct  76   QLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLA  135

Query  391  TALKLQKMLTENHISKYNVGSS-----DFTAPSTDKTVILVPGQVEDDASIRYGSPQIYR  445
             A +    + ++H+SKYN ++       + +PS   TV+++ +Q  +D +I+YG+++   
Sbjct  136  QAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADA-S  193

Query  446  NLDLL-RTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQTDILTCLQYA  504
             ++L+ +T  + NP+A I  K HPDV+ G++ G ++     +  +  AE+ + ++ LQ  
Sbjct  194  TFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNV  253

Query  505  DEVHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQD-------LLPIPRRSRRLELWQL  557
            D V  +TS  GFEALL GK ++ +GLP YAGWG+++D       L+   RR+ R +L QL
Sbjct  254  DKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQL  312

Query  558  IAGTLIHYPDYIHPETHQA  576
            +A++ ++Y+ Y++P+T +A
Sbjct  313  FAAAYLQYSRYLNPNTGEA  331

14) lipA2 in NC_010278


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  719 bits (2720),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 417/690 (61%), Positives = 564/690 (82%), Gaps = 12/690 (1%)

Query  6    ITKSLIFSRGILKIPHLNAFLHDSELISYSRLTKTIRADNVIGWGLRPSAGKARAYAEQH  65
            + ++ I SRGI KIPHL+++L + ++   ++      A+ V+GWGLRP++ KARA+A +H
Sbjct  21   VKNAYIPSRGIRKIPHLSTLLPEFHICKDGK-----EAEAVVGWGLRPTTHKARAFAAEH  75

Query  66   YLPYIALEDGFLRSLGLGVMGYPPFSVVYDDVGIYYDTTRSSRLEQLILSSH-FSATDLQ  124
             LP+IALEDGFLRSLGLGV GYPP+S+VYDD+GIYYDTTR+SRLEQLIL+++  ++  L 
Sbjct  76   QLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLA  135

Query  125  QAEQAVRLIVRHQLSKYNHNPDYVSN----GPKTSEIVLVIDQTFGDMAVKYGRANESDF  180
            QA+QA+ +I++H+LSKYNH P+   +    +P  +E VL+IDQTFGDMA++YG A+ S F
Sbjct  136  QAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTF  195

Query  181  QQMLDAAIGENPDAQIWVKTHPDVISGKKKGYLTDLHRYGNRIRLFAEDVNPISLLNRID  240
            + M+++A+ ENP+A+IWVKTHPDV+ GKK+GYLT+L +  +R++L+AED+NPISLL+ +D
Sbjct  196  ELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQ-QHRVHLLAEDINPISLLQNVD  254

Query  241  KVYCVTSQMGFEALLLGKPVITFGIPWFAGWGVTEDRHPDIDVLKRSQRRENRSFLQLFA  300
            KVYCVTSQMGFEALL GKP+ TFG+PW+AGWGV++DRHP+I+ L ++QRR  R++LQLFA
Sbjct  255  KVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFA  314

Query  301  AAYLQYSRYINPYSGKVGTIFDVIDYLSKAKILNQRLGGHLYCIGMSLWKRAVIKPFFNL  360
            AAYLQYSRY+NP +G  G++FDVIDYL+  K  N++L G+LYC+GMSLWKRAV KPFFN+
Sbjct  315  AAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNV  374

Query  361  PLCQLHFVGSLKTLEKRTLEKDAKLLIWSQGKPEVLAYSEKHHIPLLRMEDGFIRSVGLG  420
            P C+L F++S + L +  L  DA++L W++GK  ++ ++E+HHIPLLRMEDGFIRSVGLG
Sbjct  375  PSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLG  434

Query  421  SNLVAPLSLVIDDLGIYFNAQTPSRLEEILLHQEFSEQDLVLAKKLQTRLLEANIGKYNV  480
            SNLV+PLSLV DD++IYFNA+TPSRLE IL +Q+F +QD+  A KLQ  L E +I+KYNV
Sbjct  435  SNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNV  494

Query  481  GSAGFQLNVTDKRTILVPGQVEDDASIRFGSPEIKKNLDLLRKVRELNPNAYIIYKPHPD  540
            GS++F    TDK  ILVPGQVEDDASIR+GSP+I +NLDLLR VRE NPNAYIIYKPHPD
Sbjct  495  GSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPD  554

Query  541  VVSGNRQGHIPTEQAVEFADEIVENANILDCINQVDEVHTMTSLAGFEALLRGKIVHCYG  600
            VVSGNR GHI+ E+A  +AD+  E+A+IL C++  DE+HTMTSL+GFEALLRGK V CYG
Sbjct  555  VVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYG  614

Query  601  LPFYSNWGLTEDYLSLERRHRKLCLEELISAVLVYYPQYVDPENATMINaeqaiei-lqq  659
            LPFY+ WGLT+D L++ RR R+L L +LI++ L+ YP+Y++PE    INAE A +I ++Q
Sbjct  615  LPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQ  674

Query  660  qkqqlSHSGIKRPWIAKQFGKLKQLYRTLQ  689
            ++ Q +++G+ R  +AK++GK+KQLYR+++
Sbjct  675  KNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704

15) APP7_1756 in NC_010939


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  711 bits (2691),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 418/690 (61%), Positives = 561/690 (82%), Gaps = 12/690 (1%)

Query  6    ITKSLIFSRGILKIPHLNAFLHDSELISYSRLTKTIRADNVIGWGLRPSADKARAYAEQH  65
            + ++ I SRGI KIPHL+++L + ++   ++      A+ V+GWGLRP+++KARA+A +H
Sbjct  21   VKNAYIPSRGIRKIPHLSTLLPEFHICKDGK-----EAEAVVGWGLRPTTHKARAFAAEH  75

Query  66   YLPYIALEDGFLRSLGLGVMGYPPFSVVYDDVGIYYDTTRSSRLEQLILSSH-FSATDLQ  124
             LP+IALEDGFLRSLGLGV GYPP+S+VYDD+GIYYDTTR+SRLEQLIL+++  ++  L 
Sbjct  76   QLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLA  135

Query  125  QAEQAVRLIVRHQLSKYNHNLDYVSNEP----KTSEIVLVIDQTFGDMAVKYGRANESDF  180
            QA+QA+ +I++H+LSKYNH  +   ++P      +E VL+IDQTFGDMA++YG A+ S F
Sbjct  136  QAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTF  195

Query  181  QQMLDAAIGENPDAQIWVKTHPDVISGKKKGYLTDLHRYGNRIRLFAEDVNPISLLSRVD  240
            + M+++A+ ENP+A+IWVKTHPDV+ GKK+GYLT+L +  +R++L+AED+NPISLL  VD
Sbjct  196  ELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQ-QHRVHLLAEDINPISLLQNVD  254

Query  241  KVYCVTSQMGFEALLLGKKVVTFGIPWFAGWGITDDRHPDIDILKLEQRRKNRSFIQLFA  300
            KVYCVTSQMGFEALL GK + TFG+PW+AGWG++DDRHP+I+ L   QRR  R+++QLFA
Sbjct  255  KVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFA  314

Query  301  AAYLQYSRYINPYSGKVGTIFDVIDYLSKVKILNQRLSGHLYCVGMSLWKRAVIKPFFNL  360
            AAYLQYSRY+NP +G  G++FDVIDYL+ VK  N++L G+LYCVGMSLWKRAV KPFFN+
Sbjct  315  AAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNV  374

Query  361  PLCRLHFVGSLKSLEKRVFEKNARLLLWSQGKPEILAFAEKHNLPLLRMEDGFIRSVGLG  420
            P CRL F++S + L +  +  +AR+L W++GK  I+ FAE+H++PLLRMEDGFIRSVGLG
Sbjct  375  PSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLG  434

Query  421  SNLVAPLSLVIDDLGIYFNAQTPSRLEEILLHQEFSEQDLVLAKKLQTRLLEANIGKYNV  480
            SNLV+PLSLV DD++IYFNA+TPSRLE IL +Q+F +QD+  A KLQ  L E +I+KYNV
Sbjct  435  SNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNV  494

Query  481  GSAGFQLNVTDKRTILVPGQVEDDASIRFGSPEIKKNLDLLRKVRELNPNAYIIYKPHPD  540
            GS++F    TDK  ILVPGQVEDDASIR+GSP+I +NLDLLR VRE NPNAYIIYKPHPD
Sbjct  495  GSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPD  554

Query  541  VVSGNRQGHIPTEQAVEFADEIVENANILDCINQVDEVHTMTSLAGFEALLRGKIVHCYG  600
            VVSGNR GHI+ E+A  +AD+  E+A+IL C++  DE+HTMTSL+GFEALLRGK V CYG
Sbjct  555  VVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYG  614

Query  601  LPFYSNWGLTEDYLSLERRHRKLCLEELISAVLVYYPQYVDPENATMINaeqaiei-lqq  659
            LPFY+ WGLT+D L++ RR R+L L +LI++ L+ YP+Y++PE    INAE A +I ++Q
Sbjct  615  LPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQ  674

Query  660  qkqqlSHSGIKRPWIAKQFGKLKQLYRTLQ  689
            ++ Q +++G+ R  +AK++GK+KQLYR+++
Sbjct  675  KNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704

16) kpsC in NC_009053


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  708 bits (2678),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 417/690 (61%), Positives = 560/690 (82%), Gaps = 12/690 (1%)

Query  6    ITKSLIFSRGILKIPHLNAFLHDSELISYSRLTKTIRADNVIGWGLRPSADKARAYAEQH  65
            + ++ I SRGI KIPHL+++L + ++   ++      A+ V+GWGLRP+++KARA+A +H
Sbjct  21   VKNAYIPSRGIRKIPHLSTLLPEFHICKDGK-----EAEAVVGWGLRPTTHKARAFAAEH  75

Query  66   YLPYIALEDGFLRSLGLGVMGYPPFSVVYDDVGIYYDTTRSSRLEQLILSSH-FSATDLQ  124
             LP+IALEDGFLRSLGLGV GYPP+S+VYDD+GIYYDTTR+SRLEQLIL+++  ++  L 
Sbjct  76   QLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLA  135

Query  125  QAEQAVRLIVRHQLSKYNHNLDYVSNEP----KTSEIVLVIDQTFGDMAVKYGRANESDF  180
            QA+QA+ +I++H+LSKYNH  +   ++P      +E VL+IDQTFGDMA++YG A+ S F
Sbjct  136  QAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTF  195

Query  181  QQMLDAAIGENPDAQIWVKTHPDVISGKKKGYLTDLHRYGNRIRLFAEYVNPISLLSRVD  240
            + M+++A+ ENP+A+IWVKTHPDV+ GKK+GYLT+L +  +R++L+AE +NPISLL  VD
Sbjct  196  ELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQ-QHRVHLLAEDINPISLLQNVD  254

Query  241  KVYCVTSQMGFEALLLGKKVVTFGIPWFAGWGITDDRHPDIDILKLEQRRKNRSFIQLFA  300
            KVYCVTSQMGFEALL GK + TFG+PW+AGWG++DDRHP+I+ L   QRR  R+++QLFA
Sbjct  255  KVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFA  314

Query  301  AAYLQYSRYINPYSGKVGTIFDVIDYLSKVKILNQRLSGHLYCVGMSLWKRAVIKPFFNL  360
            AAYLQYSRY+NP +G  G++FDVIDYL+ VK  N++L G+LYCVGMSLWKRAV KPFFN+
Sbjct  315  AAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNV  374

Query  361  PLCRLHFVGSLKSLEKRVFEKNARLLLWSQGKPEILAFAEKHNLPLLRMEDGFIRSVGLG  420
            P CRL F++S + L +  +  +AR+L W++GK  I+ FAE+H++PLLRMEDGFIRSVGLG
Sbjct  375  PSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLG  434

Query  421  SNLVAPLSLVIDDLGIYFNAQTPSRLEEILLHQEFSEQDLVLAKKLQTRLLEANIGKYNV  480
            SNLV+PLSLV DD++IYFNA+TPSRLE IL +Q+F +QD+  A KLQ  L E +I+KYNV
Sbjct  435  SNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNV  494

Query  481  GSAGFQLNVTDKRTILVPGQVEDDASIRFGSPEIKKNLDLLRKVRELNPNAYIIYKPHPD  540
            GS++F    TDK  ILVPGQVEDDASIR+GSP+I +NLDLLR VRE NPNAYIIYKPHPD
Sbjct  495  GSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPD  554

Query  541  VVSGNRQGHIPTEQAVEFADEIVENANILDCINQVDEVHTMTSLAGFEALLRGKIVHCYG  600
            VVSGNR GHI+ E+A  +AD+  E+A+IL C++  DE+HTMTSL+GFEALLRGK V CYG
Sbjct  555  VVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYG  614

Query  601  LPFYSNWGLTEDYLSLERRHRKLCLEELISAVLVYYPQYVDPENATMINaeqaiei-lqq  659
            LPFY+ WGLT+D L++ RR R+L L +LI++ L+ YP+Y++PE    INAE A +I ++Q
Sbjct  615  LPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQ  674

Query  660  qkqqlSHSGIKRPWIAKQFGKLKQLYRTLQ  689
            ++ Q +++G+ R  +AK++GK+KQLYR+++
Sbjct  675  KNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704

17) J450_06985 in NC_021738


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  690 bits (2610),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 397/688 (58%), Positives = 539/688 (79%), Gaps = 16/688 (2%)

Query  8    SNGICRIPNLEHFLPDCRIIRIPSWRKKLGNKAKVDQIIGWGLRPSAVGARAYAQKHQLP  67
            S GI +IP+L  +LP+ +I +         +    + ++GWGLRP++  ARA+A  HQLP
Sbjct  28   SRGIRKIPHLSTLLPEFHICK---------DGKEAEAVVGWGLRPTTHKARAFAAEHQLP  78

Query  68   YIALEDGFLRSLGLGVKGYPPFSLVYDDVGIYYDTTCPSRLEKFLLEQPLQDQEQIKLAE  127
            +IALEDGFLRSLGLGV GYPP+S+VYDD+GIYYDTT PSRLE+++L       E +  A+
Sbjct  79   FIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQ  138

Query  128  KALSQILTYQLSKYNHALDFSEIPSI----KEKIVLVIDQTFGDMAVKYGQASEVDFNKM  183
            +A+  IL  +LSKYNHA ++S+  ++    K   VL+IDQTFGDMA++YG A    F+ M
Sbjct  139  QAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELM  198

Query  184  LETAISENPEAQIWVKTHPDVLSGKKKGYLTDLPQYADRVRIITEDVNPASLIKWCEKVY  243
            ++TA++ENP+A+IWVKTHPDVL GKK+GYLT+L+Q  +RV++++ED+NP SL++  +KVY
Sbjct  199  FQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQ-QHRVHLLAEDINPISLLQNVDKVY  257

Query  244  CVTSQMGFEALLLGKKVVTFGVSWFAGWGVTDDRHNSVQLLIQQKRRQARSLLQLFYAAY  303
            CVTSQMGFEALL GK + TFG++W+AGWGV+DDRH  ++ L+Q +RR +R+LLQLF AAY
Sbjct  258  CVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAY  317

Query  304  FDYSRYINPNTGEKGSIFDVIEYLHKATILNRRLSGNVYCIGMSLWKQAVIKPFFNLPQC  363
            ++YSRY+NPNTGE GS+FDVI+YL      N +L G++YC+GMSLWK+AV KPFFN+P C
Sbjct  318  LQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSC  377

Query  364  RLHFVRSLNSLKKRPLAENAKILVWSNGKPEIIQFAKENHIPLLRMEDGFIRSVGLGANL  423
            RL F+ S + L +  L+++A+IL W+NGK  I++FA ++HIPLLRMEDGFIRSVGLG+NL
Sbjct  378  RLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNL  437

Query  424  VAPLSLVVDDLGIYFNAENPSRLEQILLEAEDFSENDLSYAEALRQKLVATHIGKYNVGS  483
            V+PLSLV DD++IYFNAE PSRLE  +L+ ++F ++D+  A  L++ L   HI+KYNVGS
Sbjct  438  VPPLSLVTDDMSIYFNAETPSRLE-YILQNQNFDDQDFQTALKLQKMLTENHISKYNVGS  496

Query  484  GEVQVNAQGKKIILVPGQVEDDASIKSGSPQIKRNLDLLKKVRELNPSAYIIYKPHPDVV  543
            ++    + +K +ILVPGQVEDDASI+ GSPQI RNLDLL+ VRE NP+AYIIYKPHPDVV
Sbjct  497  SDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVV  556

Query  544  SGNRVGQIPTAETRRFADQMVDNANILDCILIADEVHTMTSLAGFEALLRGKKVHCYGLP  603
            SGNR+G+I+  ++ R+ADQ  ++A+IL C+  ADE+HTMTSL+GFEALLRGKKV CYGLP
Sbjct  557  SGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLP  616

Query  604  FYAGWGLTEDRLKSARRGKSLTLSQLIAATLIYYPLYVDPISRQFIDANQAIHILSQQKR  663
            FYAGWGLT+D L  +RR++ L L QLIA+TLI YP Y++P ++Q I+A+ A +IL +QK 
Sbjct  617  FYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKN  676

Query  664  NLTNQR-IKRSWVSKQYGKLQHLYRAFK  690
               N+  + R+  +K+ GK+++LYR+FK
Sbjct  677  MQKNNNGLHRGCFAKKLGKIKQLYRSFK  704

18) F382_08125 in NC_021743


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  689 bits (2607),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 402/685 (59%), Positives = 539/685 (79%), Gaps = 16/685 (2%)

Query  11   IIKIPNLKGFLPHCEIRRRPLVGKTFIAQKRPNQIIGWGLRPSAVGSRAYAQKHQLPYIA  70
            I KIP+L  +LP+ +I +           K ++ ++GWGLRP++  +RA+A  HQLP+IA
Sbjct  31   IRKIPHLSTLLPEFHICK---------DGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIA  81

Query  71   LEDGFLRSLGLGVKGYPPFSLVYDDIGIYYDTTCPSRLEKLLLEKPLQDQEQIKLAERAL  130
            LEDGFLRSLGLGV GYPP+S+VYDDIGIYYDTT PSRLE+L+L       E +  A++A+
Sbjct  82   LEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAM  141

Query  131  SQILTYGLSKYNHALDFSEI----PSAKEKIVLVIDQTFGDMAVKYGQASEVDFNKMLET  186
              IL   LSKYNHA ++S+     +++K   VL+IDQTFGDMA++YG A    F+ M++T
Sbjct  142  DFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQT  201

Query  187  AISENPEAQIWVKTHPDVLSGKKKGYLTDLPQYTDRVRIITEDVNPASLIKLCEKVYCVT  246
            A++ENP+A+IWVKTHPDVL GKK+GYLT+L+Q  +RV++++ED+NP SL++  +KVYCVT
Sbjct  202  ALNENPQADIWVKTHPDVLCGKKQGYLTQLAQ-QHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  247  SQMGFEALLLGKKVVTFGVPWFAGWGVTDDRNEAVQLLVQQNRRKDRSLLQLFYAAYFDY  306
            SQMGFEALL GK + TFG+PW+AGWGV+DDR+  ++ LVQ +RR  R+LLQLF AAY++Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  307  SRYINPNTGEKGSIFDVIDYLYKAKRLNQRLSGNLYCIGMSLWKQAVIKPFFNLPQCRLH  366
            SRY+NPNTGE GS+FDVIDYL   KR N++L G+LYC+GMSLWK+AV KPFFN+P CRL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  367  FVRSLNSLKKRPLADNAKILVWSNGKADVLQFAQQNNIPLLRMEDGFIRSVGLGANLVAP  426
            F+ S + L +  L+D+A+IL W+NGK  +++FA+Q++IPLLRMEDGFIRSVGLG+NLV+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPP  440

Query  427  LSLVVDDLGIYFNAENTSRLEQILLSAEHFSETDLSYAETLRQKLVASHIGKYNVGGGDV  486
            LSLV DD++IYFNAE  SRLE  +L  ++F + D+  A  L++ L  +HI+KYNVG++D 
Sbjct  441  LSLVTDDMSIYFNAETPSRLE-YILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  487  KFNAQGKKIILVPGQVEDDASIKSGSPQIKRNLDLLKKVRELNPSAYIIYKPHPDVVSGN  546
               + +K +ILVPGQVEDDASI+ GSPQI RNLDLL+ VRE NP+AYIIYKPHPDVVSGN
Sbjct  500  TAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGN  559

Query  547  RVGQIPTAETRRFADQMVDNANILDCILIADEVHTMTSLAGFEALLRGKKVHCYGLPFYA  606
            R+G+I+  ++ R+ADQ  ++A+IL C+  ADE+HTMTSL+GFEALLRGKKV CYGLPFYA
Sbjct  560  RIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYA  619

Query  607  GWGLTEDRLKSARRGKSLTLSQLIAATLIYYPLYVDPISRQFIDANQAIHILSQQKRNLT  666
            GWGLT+D L  +RR++ L L QLIA+TLI YP Y++P ++Q I+A+ A +IL +QK    
Sbjct  620  GWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQK  679

Query  667  NQR-IKRSWVSKQYGKLQHLYRAFK  690
            N+  + R+  +K+ GK+++LYR+FK
Sbjct  680  NNNGLHRGCFAKKLGKIKQLYRSFK  704

19) phyA in NC_021082


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  689 bits (2607),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 402/685 (59%), Positives = 539/685 (79%), Gaps = 16/685 (2%)

Query  11   IIKIPNLKGFLPHCEIRRRPLVGKTFIAQKRPNQIIGWGLRPSAVGSRAYAQKHQLPYIA  70
            I KIP+L  +LP+ +I +           K ++ ++GWGLRP++  +RA+A  HQLP+IA
Sbjct  31   IRKIPHLSTLLPEFHICK---------DGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIA  81

Query  71   LEDGFLRSLGLGVKGYPPFSLVYDDIGIYYDTTCPSRLEKLLLEKPLQDQEQIKLAERAL  130
            LEDGFLRSLGLGV GYPP+S+VYDDIGIYYDTT PSRLE+L+L       E +  A++A+
Sbjct  82   LEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAM  141

Query  131  SQILTYGLSKYNHALDFSEI----PSAKEKIVLVIDQTFGDMAVKYGQASEVDFNKMLET  186
              IL   LSKYNHA ++S+     +++K   VL+IDQTFGDMA++YG A    F+ M++T
Sbjct  142  DFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQT  201

Query  187  AISENPEAQIWVKTHPDVLSGKKKGYLTDLPQYTDRVRIITEDVNPASLIKLCEKVYCVT  246
            A++ENP+A+IWVKTHPDVL GKK+GYLT+L+Q  +RV++++ED+NP SL++  +KVYCVT
Sbjct  202  ALNENPQADIWVKTHPDVLCGKKQGYLTQLAQ-QHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  247  SQMGFEALLLGKKVVTFGVPWFAGWGVTDDRNEAVQLLVQQNRRKDRSLLQLFYAAYFDY  306
            SQMGFEALL GK + TFG+PW+AGWGV+DDR+  ++ LVQ +RR  R+LLQLF AAY++Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  307  SRYINPNTGEKGSIFDVIDYLYKAKRLNQRLSGNLYCIGMSLWKQAVIKPFFNLPQCRLH  366
            SRY+NPNTGE GS+FDVIDYL   KR N++L G+LYC+GMSLWK+AV KPFFN+P CRL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  367  FVRSLNSLKKRPLADNAKILVWSNGKADVLQFAQQNNIPLLRMEDGFIRSVGLGANLVAP  426
            F+ S + L +  L+D+A+IL W+NGK  +++FA+Q++IPLLRMEDGFIRSVGLG+NLV+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPP  440

Query  427  LSLVVDDLGIYFNAENTSRLEQILLSAEHFSETDLSYAETLRQKLVASHIGKYNVGGGDV  486
            LSLV DD++IYFNAE  SRLE  +L  ++F + D+  A  L++ L  +HI+KYNVG++D 
Sbjct  441  LSLVTDDMSIYFNAETPSRLE-YILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  487  KFNAQGKKIILVPGQVEDDASIKSGSPQIKRNLDLLKKVRELNPSAYIIYKPHPDVVSGN  546
               + +K +ILVPGQVEDDASI+ GSPQI RNLDLL+ VRE NP+AYIIYKPHPDVVSGN
Sbjct  500  TAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGN  559

Query  547  RVGQIPTAETRRFADQMVDNANILDCILIADEVHTMTSLAGFEALLRGKKVHCYGLPFYA  606
            R+G+I+  ++ R+ADQ  ++A+IL C+  ADE+HTMTSL+GFEALLRGKKV CYGLPFYA
Sbjct  560  RIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYA  619

Query  607  GWGLTEDRLKSARRGKSLTLSQLIAATLIYYPLYVDPISRQFIDANQAIHILSQQKRNLT  666
            GWGLT+D L  +RR++ L L QLIA+TLI YP Y++P ++Q I+A+ A +IL +QK    
Sbjct  620  GWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQK  679

Query  667  NQR-IKRSWVSKQYGKLQHLYRAFK  690
            N+  + R+  +K+ GK+++LYR+FK
Sbjct  680  NNNGLHRGCFAKKLGKIKQLYRSFK  704

20) D650_740 in NC_020833


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  689 bits (2607),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 402/685 (59%), Positives = 539/685 (79%), Gaps = 16/685 (2%)

Query  11   IIKIPNLKGFLPHCEIRRRPLVGKTFIAQKRPNQIIGWGLRPSAVGSRAYAQKHQLPYIA  70
            I KIP+L  +LP+ +I +           K ++ ++GWGLRP++  +RA+A  HQLP+IA
Sbjct  31   IRKIPHLSTLLPEFHICK---------DGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIA  81

Query  71   LEDGFLRSLGLGVKGYPPFSLVYDDIGIYYDTTCPSRLEKLLLEKPLQDQEQIKLAERAL  130
            LEDGFLRSLGLGV GYPP+S+VYDDIGIYYDTT PSRLE+L+L       E +  A++A+
Sbjct  82   LEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAM  141

Query  131  SQILTYGLSKYNHALDFSEI----PSAKEKIVLVIDQTFGDMAVKYGQASEVDFNKMLET  186
              IL   LSKYNHA ++S+     +++K   VL+IDQTFGDMA++YG A    F+ M++T
Sbjct  142  DFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQT  201

Query  187  AISENPEAQIWVKTHPDVLSGKKKGYLTDLPQYTDRVRIITEDVNPASLIKLCEKVYCVT  246
            A++ENP+A+IWVKTHPDVL GKK+GYLT+L+Q  +RV++++ED+NP SL++  +KVYCVT
Sbjct  202  ALNENPQADIWVKTHPDVLCGKKQGYLTQLAQ-QHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  247  SQMGFEALLLGKKVVTFGVPWFAGWGVTDDRNEAVQLLVQQNRRKDRSLLQLFYAAYFDY  306
            SQMGFEALL GK + TFG+PW+AGWGV+DDR+  ++ LVQ +RR  R+LLQLF AAY++Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  307  SRYINPNTGEKGSIFDVIDYLYKAKRLNQRLSGNLYCIGMSLWKQAVIKPFFNLPQCRLH  366
            SRY+NPNTGE GS+FDVIDYL   KR N++L G+LYC+GMSLWK+AV KPFFN+P CRL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  367  FVRSLNSLKKRPLADNAKILVWSNGKADVLQFAQQNNIPLLRMEDGFIRSVGLGANLVAP  426
            F+ S + L +  L+D+A+IL W+NGK  +++FA+Q++IPLLRMEDGFIRSVGLG+NLV+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPP  440

Query  427  LSLVVDDLGIYFNAENTSRLEQILLSAEHFSETDLSYAETLRQKLVASHIGKYNVGGGDV  486
            LSLV DD++IYFNAE  SRLE  +L  ++F + D+  A  L++ L  +HI+KYNVG++D 
Sbjct  441  LSLVTDDMSIYFNAETPSRLE-YILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  487  KFNAQGKKIILVPGQVEDDASIKSGSPQIKRNLDLLKKVRELNPSAYIIYKPHPDVVSGN  546
               + +K +ILVPGQVEDDASI+ GSPQI RNLDLL+ VRE NP+AYIIYKPHPDVVSGN
Sbjct  500  TAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGN  559

Query  547  RVGQIPTAETRRFADQMVDNANILDCILIADEVHTMTSLAGFEALLRGKKVHCYGLPFYA  606
            R+G+I+  ++ R+ADQ  ++A+IL C+  ADE+HTMTSL+GFEALLRGKKV CYGLPFYA
Sbjct  560  RIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYA  619

Query  607  GWGLTEDRLKSARRGKSLTLSQLIAATLIYYPLYVDPISRQFIDANQAIHILSQQKRNLT  666
            GWGLT+D L  +RR++ L L QLIA+TLI YP Y++P ++Q I+A+ A +IL +QK    
Sbjct  620  GWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQK  679

Query  667  NQR-IKRSWVSKQYGKLQHLYRAFK  690
            N+  + R+  +K+ GK+++LYR+FK
Sbjct  680  NNNGLHRGCFAKKLGKIKQLYRSFK  704

21) N220_13920 in NC_021883


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  689 bits (2607),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 402/685 (59%), Positives = 539/685 (79%), Gaps = 16/685 (2%)

Query  11   IIKIPNLKGFLPHCEIRRRPLVGKTFIAQKRPNQIIGWGLRPSAVGSRAYAQKHQLPYIA  70
            I KIP+L  +LP+ +I +           K ++ ++GWGLRP++  +RA+A  HQLP+IA
Sbjct  31   IRKIPHLSTLLPEFHICK---------DGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIA  81

Query  71   LEDGFLRSLGLGVKGYPPFSLVYDDIGIYYDTTCPSRLEKLLLEKPLQDQEQIKLAERAL  130
            LEDGFLRSLGLGV GYPP+S+VYDDIGIYYDTT PSRLE+L+L       E +  A++A+
Sbjct  82   LEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAM  141

Query  131  SQILTYGLSKYNHALDFSEI----PSAKEKIVLVIDQTFGDMAVKYGQASEVDFNKMLET  186
              IL   LSKYNHA ++S+     +++K   VL+IDQTFGDMA++YG A    F+ M++T
Sbjct  142  DFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQT  201

Query  187  AISENPEAQIWVKTHPDVLSGKKKGYLTDLPQYTDRVRIITEDVNPASLIKLCEKVYCVT  246
            A++ENP+A+IWVKTHPDVL GKK+GYLT+L+Q  +RV++++ED+NP SL++  +KVYCVT
Sbjct  202  ALNENPQADIWVKTHPDVLCGKKQGYLTQLAQ-QHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  247  SQMGFEALLLGKKVVTFGVPWFAGWGVTDDRNEAVQLLVQQNRRKDRSLLQLFYAAYFDY  306
            SQMGFEALL GK + TFG+PW+AGWGV+DDR+  ++ LVQ +RR  R+LLQLF AAY++Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  307  SRYINPNTGEKGSIFDVIDYLYKAKRLNQRLSGNLYCIGMSLWKQAVIKPFFNLPQCRLH  366
            SRY+NPNTGE GS+FDVIDYL   KR N++L G+LYC+GMSLWK+AV KPFFN+P CRL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  367  FVRSLNSLKKRPLADNAKILVWSNGKADVLQFAQQNNIPLLRMEDGFIRSVGLGANLVAP  426
            F+ S + L +  L+D+A+IL W+NGK  +++FA+Q++IPLLRMEDGFIRSVGLG+NLV+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPP  440

Query  427  LSLVVDDLGIYFNAENTSRLEQILLSAEHFSETDLSYAETLRQKLVASHIGKYNVGGGDV  486
            LSLV DD++IYFNAE  SRLE  +L  ++F + D+  A  L++ L  +HI+KYNVG++D 
Sbjct  441  LSLVTDDMSIYFNAETPSRLE-YILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  487  KFNAQGKKIILVPGQVEDDASIKSGSPQIKRNLDLLKKVRELNPSAYIIYKPHPDVVSGN  546
               + +K +ILVPGQVEDDASI+ GSPQI RNLDLL+ VRE NP+AYIIYKPHPDVVSGN
Sbjct  500  TAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGN  559

Query  547  RVGQIPTAETRRFADQMVDNANILDCILIADEVHTMTSLAGFEALLRGKKVHCYGLPFYA  606
            R+G+I+  ++ R+ADQ  ++A+IL C+  ADE+HTMTSL+GFEALLRGKKV CYGLPFYA
Sbjct  560  RIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYA  619

Query  607  GWGLTEDRLKSARRGKSLTLSQLIAATLIYYPLYVDPISRQFIDANQAIHILSQQKRNLT  666
            GWGLT+D L  +RR++ L L QLIA+TLI YP Y++P ++Q I+A+ A +IL +QK    
Sbjct  620  GWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQK  679

Query  667  NQR-IKRSWVSKQYGKLQHLYRAFK  690
            N+  + R+  +K+ GK+++LYR+FK
Sbjct  680  NNNGLHRGCFAKKLGKIKQLYRSFK  704

22) ASU2_09035 in NC_018690


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  684 bits (2585),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 406/683 (60%), Positives = 549/683 (81%), Gaps = 12/683 (1%)

Query  8    SRGILKIPHLNAFLHDSEIIAFPHLGTAPLVDNVIGWGLRPSTQKARDYAQKHGLLYIAL  67
            SRGI KIPHL+++L + +I        +   + V+GWGLRP+T+KAR +A  H L +IAL
Sbjct  28   SRGIRKIPHLSTLLPEFHICK-----DGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIAL  82

Query  68   EDGFLRSLGLGVMGYPPFSIVYDDVGIYYDTTRPSRLEALILHSQ-LTPEQMCAAERAIS  126
            EDGFLRSLGLGV GYPP+SIVYDD+GIYYDTTRPSRLE LIL ++ + +E +  A++A+ 
Sbjct  83   EDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMD  142

Query  127  LIQQHQLSKYNHNVDF--DVPLDTAA--PIVLVIDQTFGDMAVKFGSAGEEQFRQMLEAA  182
            +I QH+LSKYNH  ++  D PL +++    VL+IDQTFGDMA+++G+A+   F  M+++A
Sbjct  143  FILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQTA  202

Query  183  IRENPQAQIWVKTHPDVISGKKKGYLIDLHSYGNRIRLFAEDVNPLSLLKQVDKVYCVTS  242
            + ENPQA+IWVKTHPDV+ GKK+GYL +L    +R++L+AED+NP+SLL++VDKVYCVTS
Sbjct  203  LNENPQADIWVKTHPDVLCGKKQGYLTQLAQ-QHRVHLLAEDINPISLLQNVDKVYCVTS  261

Query  243  QMGFEALLLGKQVITFGVPWFAGWGVTDDRHPDIEILKQAQRRKNRSFIQLFAAAYLQYS  302
            QMGFEALL GK + TFG+PW+AGWGV+DDRHP+I+ L Q+QRR  R+++QLFAAAYLQYS
Sbjct  262  QMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQYS  321

Query  303  RYINPNNGKIGTIFDVIDYLSKTKALNQRLSGSLYCIGMSLWKQAVIKPFFDLPLCKLHF  362
            RY+NPN G  G++FDVIDYL+  K  N++L G LYC+GMSLWK+AV KPFF++P C+L F
Sbjct  322  RYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKF  381

Query  363  VRSLKKLENRPLASDAKLLIWSQGKPEILAFAAKHQLPILRMEDGFIRSVGLGSNLVAPL  422
            + S +KL    L+ DA++L W++GK  I+ FA +H++P+LRMEDGFIRSVGLGSNLV+PL
Sbjct  382  ISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPL  441

Query  423  SLVVDDLGIYFNAQTPSRLEEILQYQEFSEQDLALAKQLRQRLIQANIGKYNVGNTGFRL  482
            SLV DD++IYFNA+TPSRLE ILQ Q+F +QD+  A +L++ L + +I+KYNVG+++F  
Sbjct  442  SLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTA  501

Query  483  SVTDKKTILVPGQVEDDASIRFGSPQLKRNVDLLEKVRELNPDAYIIYKPHPDVVSGNRQ  542
            + TDK  ILVPGQVEDDASIR+GSPQ+ RN+DLL  VRE NP+AYIIYKPHPDVVSGNR 
Sbjct  502  PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRI  561

Query  543  GLVVHEQAVKFADEIVENANILDCINQVDEVHTMTSLAGFEALLRGKIVHCYGLPFYSNW  602
            G +  E+A ++AD+  E+A+IL C++  DE+HTMTSL+GFEALLRGK V CYGLPFY+ W
Sbjct  562  GHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGW  621

Query  603  GLTQDHIPltrrtrqlrleelIAAVLVYYPQYVDPEKRVMIDanqaiai-lqqqkqklan  661
            GLTQD +P+ RR+R+L L +LIA+ L+ YP+Y++PE +  I+A+ A  I ++Q++ +  N
Sbjct  622  GLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNN  681

Query  662  SGIKRPWIAKQFGKLKQLYRTLK  684
            +G+ R  +AK++GK+KQLYR++K
Sbjct  682  NGLHRGCFAKKLGKIKQLYRSFK  704

23) J451_07850 in NC_021739


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  684 bits (2587),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 399/685 (59%), Positives = 536/685 (79%), Gaps = 16/685 (2%)

Query  11   IIKIPNLKGFLPHCEIRRRPLVGKTFIAQKRPNQIIGWGLRPSAVGARAYAQKHQLPYIA  70
            I KIP+L  +LP+ +I +           K ++ ++GWGLRP++  ARA+A  HQLP+IA
Sbjct  31   IRKIPHLSTLLPEFHICK---------DGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIA  81

Query  71   LEDGFLRSLGLGVKGYPPFSLVYDDIGIYYDTTCPSRLEKLLLEKPLQDQEQIKLAERAL  130
            LEDGFLRSLGLGV GYPP+S+VYDDIGIYYDTT PSRLE+L+L       E +  A++A+
Sbjct  82   LEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAM  141

Query  131  SQILTYGLSKYNHALDFSEI----PSAKEKIVLVIDQTFGDMAVKYGQASEVDFNKMLET  186
              IL   LSKYNHA ++S+     +++K   VL+IDQTFGDMA++YG A    F+ M++T
Sbjct  142  DFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQT  201

Query  187  AISENPEAQIWVKTHPDVLSGKKKGYLTDLPQYTDRVRIITEDVNPASLIKLCEKVYCVT  246
            A++ENP+A+IWVKTHPDVL GKK+GYLT+L+Q  +RV++++ED+NP SL++  +KVYCVT
Sbjct  202  ALNENPQADIWVKTHPDVLCGKKQGYLTQLAQ-QHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  247  SQMGFEALLLGKKVVTFGVPWFAGWGVTDDRNEAVQLLVQQNRRKDRSLLQLFYAAYFDY  306
            SQMGFEALL GK + TFG+PW+AGWGV+DDR+  ++ LVQ +RR  R+LLQLF AAY++Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  307  SRYINPNTGEKGSIFDVIEYLHKATILNRRLSGNVYCIGMSLWKQAVIKPFFNLPQCRLH  366
            SRY+NPNTGE GS+FDVI+YL      N +L G++YC+GMSLWK+AV KPFFN+P CRL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  367  FVRSLNSLKKRPLADNAKILVWSNGKADVLQFAQQNNIPLLRMEDGFIRSVGLGANLVAP  426
            F+ S + L +  L+D+A+IL W+NGK  +++FA+Q++IPLLRMEDGFIRSVGLG+NLV+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPP  440

Query  427  LSLVVDDLGIYFNAENTSRLEQILLSAEHFSETDLSYAETLRQKLVASHIGKYNVGGGDV  486
            LSLV DD++IYFNAE  SRLE  +L  ++F + D+  A  L++ L  +HI+KYNVG++D 
Sbjct  441  LSLVTDDMSIYFNAETPSRLE-YILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  487  KFNAQGKKIILVPGQVEDDASIKSGSPQIKRNLDLLKKVRELNPSAYIIYKPHPDVVSGN  546
               + +K +ILVPGQVEDDASI+ GSPQI RNLDLL+ VRE NP+AYIIYKPHPDVVSGN
Sbjct  500  TAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGN  559

Query  547  RVGQIPTAETRRFADQMVDNANILDCILIADEVHTMTSLAGFEALLRGKKVHCYGLPFYA  606
            R+G+I+  ++ R+ADQ  ++A+IL C+  ADE+HTMTSL+GFEALLRGKKV CYGLPFYA
Sbjct  560  RIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYA  619

Query  607  GWGLTEDRLKSARRGKSLTLSQLIAATLIYYPLYVDPISRQFIDANQAIHILSQQKRNLT  666
            GWGLT+D L  +RR++ L L QLIA+TLI YP Y++P ++Q I+A+ A +IL +QK    
Sbjct  620  GWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQK  679

Query  667  NQR-IKRSWVSKQYGKLQHLYRAFK  690
            N+  + R+  +K+ GK+++LYR+FK
Sbjct  680  NNNGLHRGCFAKKLGKIKQLYRSFK  704

24) hcsA' in NC_016809


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  662 bits (2501),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 393/685 (58%), Positives = 529/685 (78%), Gaps = 21/685 (3%)

Query  8    SHGIKKIPHLASFFPNEELAFARIFSVSKADSVLGWGLRPSTKKSRAYAQKYNLPFIALE  67
            S+GI+KIPHL++++P+    F        A++V+GWGLRP+T K+RA+A   +LPFIALE
Sbjct  28   SRGIRKIPHLSTLLPE----FHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALE  83

Query  68   DGFLRSLGLGVDGYPPLSMVVDKLGIYYDTTRPSTLEQLIQAGEC--DEVLAEKARSQ--  123
            DGFLRSLGLGV GYPP S+V D +GIYYDTTRPS LEQLI A++    E LA+  ++   
Sbjct  84   DGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDF  143

Query  124  IVTHQLSKYNQTLVDYEKEGDEPL--------VLVIDQTFGDMAVKYGQADAEHFAQMLQ  175
            I+ H+LSKYN++    E  +D+PL        VL+IDQTFGDMA++YG ADA  F  M+Q
Sbjct  144  ILQHHLSKYNHAP---ELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  176  AAISENPNAKILVKTHPDVLSGKKQGYFSPNENYPSNVHFFSNPVNPISLIKAVEKVYCV  235
            +A++ENP+A I VKTHPDVL GKKQGY++   +    VH++++ +NPISL++ V+KVYCV
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQ-QHRVHLLAEDINPISLLQNVDKVYCV  259

Query  236  TSQMGFEALLMGKPVVTFGVPWFAGWGVTDDRHPNAKALTQSERRKVRSVLQLFYAAYFQ  295
            TSQMGFEALL GKP+ TFG+PW+AGWGV+DDRHP+ + L Q++RR  R++LQLF AAY+Q
Sbjct  260  TSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQ  319

Query  296  YTRYLNPNTGKSGTIFDVINHIIHTKALNLRLQGNLYCVGISLWKRAVIKPFFRLPSCKL  355
            Y+RYLNPNTG +G++FDVI+ +   K  N +L+G+LYCVG+SLWKRAV KPFF +PSC+L
Sbjct  320  YSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRL  379

Query  356  HFVTDVSKLNGKTFTKNDRLLLWGTGKEAALNYAKAHNINVLRMEDGFIRSVGLGSNLVA  415
             F++   KL    ++ + R+L WG GKEA + +A  H+I +LRMEDGFIRSVGLGSNLV+
Sbjct  380  KFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVP  439

Query  416  PLSLVCDDLGIYFNAESPSRLEEILQHQQFTEADLIEAKQLQHALVSQHIGKYNVGEGTF  475
            PLSLV DD++IYFNAE+PSRLE ILQ+Q+F + D+  A +LQ  L  +HI+KYNVG + F
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  476  SLPNTDKKKILVVGQVEDDASIRTGSPNIRTNLDLLKTVRAANPEAYIVYKPHSDVVSGN  535
            + P+TDK  ILV GQVEDDASIR GSP+I  NLDLL+TVR  NP+AYI+YKPH+DVVSGN
Sbjct  500  TAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGN  559

Query  536  RIGHIAESQAVKLADQIAKTENVLDCINAVDELHTMTSLAGFEALLRNKTVHCYGLPFYS  595
            RIGHI+  +A + ADQ A   ++L C++  DE+HTMTSL+GFEALLR K V CYGLPFY+
Sbjct  560  RIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYA  619

Query  596  HWGLTVDHCSFNRRNRKLSLLELIAGTLVYYPQYVNPNTGELTNAQTTIEIL-KAQRLAL  654
             WGLT D  ++ RR+R+L L +LIAGTL+ YP+Y++P+T +  NA+T+ +IL + + +  
Sbjct  620  GWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQK  679

Query  655  NHSGIHRHWLAKQYGKLQHLVRTLR  679
            N++G+HR  +AK+ GK+++L R+++
Sbjct  680  NNNGLHRGCFAKKLGKIKQLYRSFK  704

25) hcsA' in NC_016809


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  662 bits (2501),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 393/685 (58%), Positives = 529/685 (78%), Gaps = 21/685 (3%)

Query  8    SHGIKKIPHLASFFPNEELAFARIFSVSKADSVLGWGLRPSTKKSRAYAQKYNLPFIALE  67
            S+GI+KIPHL++++P+    F        A++V+GWGLRP+T K+RA+A   +LPFIALE
Sbjct  28   SRGIRKIPHLSTLLPE----FHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALE  83

Query  68   DGFLRSLGLGVDGYPPLSMVVDKLGIYYDTTRPSTLEQLIQAGEC--DEVLAEKARSQ--  123
            DGFLRSLGLGV GYPP S+V D +GIYYDTTRPS LEQLI A++    E LA+  ++   
Sbjct  84   DGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDF  143

Query  124  IVTHQLSKYNQTLVDYEKEGDEPL--------VLVIDQTFGDMAVKYGQADAEHFAQMLQ  175
            I+ H+LSKYN++    E  +D+PL        VL+IDQTFGDMA++YG ADA  F  M+Q
Sbjct  144  ILQHHLSKYNHAP---ELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  176  AAISENPNAKILVKTHPDVLSGKKQGYFSPNENYPSNVHFFSNPVNPISLIKAVEKVYCV  235
            +A++ENP+A I VKTHPDVL GKKQGY++   +    VH++++ +NPISL++ V+KVYCV
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQ-QHRVHLLAEDINPISLLQNVDKVYCV  259

Query  236  TSQMGFEALLMGKPVVTFGVPWFAGWGVTDDRHPNAKALTQSERRKVRSVLQLFYAAYFQ  295
            TSQMGFEALL GKP+ TFG+PW+AGWGV+DDRHP+ + L Q++RR  R++LQLF AAY+Q
Sbjct  260  TSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQ  319

Query  296  YTRYLNPNTGKSGTIFDVINHIIHTKALNLRLQGNLYCVGISLWKRAVIKPFFRLPSCKL  355
            Y+RYLNPNTG +G++FDVI+ +   K  N +L+G+LYCVG+SLWKRAV KPFF +PSC+L
Sbjct  320  YSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRL  379

Query  356  HFVTDVSKLNGKTFTKNDRLLLWGTGKEAALNYAKAHNINVLRMEDGFIRSVGLGSNLVA  415
             F++   KL    ++ + R+L WG GKEA + +A  H+I +LRMEDGFIRSVGLGSNLV+
Sbjct  380  KFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVP  439

Query  416  PLSLVCDDLGIYFNAESPSRLEEILQHQQFTEADLIEAKQLQHALVSQHIGKYNVGEGTF  475
            PLSLV DD++IYFNAE+PSRLE ILQ+Q+F + D+  A +LQ  L  +HI+KYNVG + F
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  476  SLPNTDKKKILVVGQVEDDASIRTGSPNIRTNLDLLKTVRAANPEAYIVYKPHSDVVSGN  535
            + P+TDK  ILV GQVEDDASIR GSP+I  NLDLL+TVR  NP+AYI+YKPH+DVVSGN
Sbjct  500  TAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGN  559

Query  536  RIGHIAESQAVKLADQIAKTENVLDCINAVDELHTMTSLAGFEALLRNKTVHCYGLPFYS  595
            RIGHI+  +A + ADQ A   ++L C++  DE+HTMTSL+GFEALLR K V CYGLPFY+
Sbjct  560  RIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYA  619

Query  596  HWGLTVDHCSFNRRNRKLSLLELIAGTLVYYPQYVNPNTGELTNAQTTIEIL-KAQRLAL  654
             WGLT D  ++ RR+R+L L +LIAGTL+ YP+Y++P+T +  NA+T+ +IL + + +  
Sbjct  620  GWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQK  679

Query  655  NHSGIHRHWLAKQYGKLQHLVRTLR  679
            N++G+HR  +AK+ GK+++L R+++
Sbjct  680  NNNGLHRGCFAKKLGKIKQLYRSFK  704

26) hcsA in NC_022356


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  656 bits (2479),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 391/680 (58%), Positives = 521/680 (77%), Gaps = 21/680 (3%)

Query  8    SHGIKKIPHLASFFPNQKLAFARIFSVPKADSVLGWGLRPSTKKSRAYAQKHNLPFIALE  67
            S+GI+KIPHL++++P+    F        A++V+GWGLRP+T K+RA+A  H+LPFIALE
Sbjct  28   SRGIRKIPHLSTLLPE----FHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALE  83

Query  68   DGFLRSLGLGVDGYPPLSMIVDKLGIYYDTTRPSTLEQLVLAGEC--DEVLAEKVRSQ--  123
            DGFLRSLGLGV GYPP S++ D +GIYYDTTRPS LEQL+LA++    E LA+  ++   
Sbjct  84   DGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDF  143

Query  124  IMTHQLSKYNQTLVDYEKEGDEPL--------VLVIDQTFGDMAVKYGQADAEHFAQMLQ  175
            I+ H+LSKYN++    E  +D+PL        VL+IDQTFGDMA++YG ADA  F  M+Q
Sbjct  144  ILQHHLSKYNHAP---ELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  176  AAITENPKAKILVKTHPDVLSGKKQGYFSPNENYPSNVHFFSDPVNPISLIKAVEKVYCV  235
            +A+ ENP+A I VKTHPDVL GKKQGY++   +    VH++++ +NPISL++ V+KVYCV
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQ-QHRVHLLAEDINPISLLQNVDKVYCV  259

Query  236  TSQMGFEALLAGKPVVTFGVPWFAGWGVTDDRHQNAKALAQSERRKVRSVLQLFYAAYFQ  295
            TSQMGFEALL GKP+ TFG+PW+AGWGV+DDRH + + L Q++RR  R++LQLF AAY+Q
Sbjct  260  TSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQ  319

Query  296  YTRYLNPNTGTAGTIFDVINHIIHTKALNLCLQGNLYCVGMSLWKRAVIKPFFRLPSCKL  355
            Y+RYLNPNTG AG++FDVI+ +   K  N  L+G+LYCVGMSLWKRAV KPFF +PSC+L
Sbjct  320  YSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRL  379

Query  356  HFVKDVSKLNGKTFTKNDRLLLWGTGKEAALNYAKAHNINMLRMEDGFIRSVGLGSNLVA  415
             F+    KL    ++ + R+L WG GKEA + +A  H+I +LRMEDGFIRSVGLGSNLV+
Sbjct  380  KFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVP  439

Query  416  PLSLVCDDLGIYFNAESPSRLEEILQHQQFTEADLIEASQLQHALVSQHIGKYNVGEGTF  475
            PLSLV DD++IYFNAE+PSRLE ILQ+Q+F + D+  A +LQ  L  +HI+KYNVG + F
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  476  SLPNTVKKKILVVGQVEDDASIRTASPNIRTNLDLLKTVCAANPQAYIVYKPHPDVVSGN  535
            + P+T K  ILV GQVEDDASIR +SP+I  NLDLL+TV   NP+AYI+YKPHPDVVSGN
Sbjct  500  TAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGN  559

Query  536  RIGHIAESQAVKLADQIAKTENVLDCINAVDELHTMTSLAGFEALLRNKTVHCYGLPFYS  595
            RIGHI+  +A + ADQ A   ++L C++  DE+HTMTSL+GFEALLR K V CYGLPFY+
Sbjct  560  RIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYA  619

Query  596  HWGLTVDHCSFNRRNRKLSLLELISGTLVYYPQYVNPNTGELTNAQTAIEIL-KAQRLAL  654
             WGLT D  ++ RR+R+L L +LI+GTL+ YP+Y++P+T +  NA+TA +IL + + +  
Sbjct  620  GWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQK  679

Query  655  NHSGIHRHWLAKQYGKLQHL  674
            N++G+HR  +AK+ GK+++L
Sbjct  680  NNNGLHRGCFAKKLGKIKQL  699

27) WQG_2620 in NC_020515


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  639 bits (2416),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/683 (59%), Positives = 529/683 (78%), Gaps = 13/683 (1%)

Query  7    SSGILNIPHLAAFLPESELLPYARFRHQAVECVYGWGLKPTSLKARNYATQHNLPYIALE  66
            S GI +IPHL+++LPE ++   ++      E V GWGL+PT+ KAR +A++H+LP+IALE
Sbjct  28   SRGIRKIPHLSTLLPEFHICKDGK----EAEAVVGWGLRPTTHKARAFAAEHQLPFIALE  83

Query  67   DGFLRSTGLGVEGYPPFSMVVDDLGIYYDTRQPSRLEQLIlaadqsaellqqaslalaq-  125
            DGFLRS GLGV GYPP+S+V DD+GIYYDT +PSRLEQLILAAD  +      +    + 
Sbjct  84   DGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDF  143

Query  126  IRQFRLSKYNHAPDFAQS----VSAERPIVLVLDQTFGDMAVQCGQADAACFEQMLHAAI  181
            I Q +LSKYNHAP++++      ++    VL++DQTFGDMA+Q G ADA+ FE M+++A+
Sbjct  144  ILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQTAL  203

Query  182  AENPHAEIWVKTHPDVISGKKKGYLTQIAKGENVRLLAQDCNPLSLLAQAEKVYCVTSQM  241
             ENP+A+IWVKTHPDV+ GKK+GYLTQ+A+ + V+LLA+D NP+SLL + +KVYCVTSQM
Sbjct  204  NENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQM  263

Query  242  GFEALMLGKTVVTFGVPWFAGWGISDDRHPNVTALQTNGRRAERTFLQLFAAAYLQYSRY  301
            GFEAL+ GK + TFG+PW+AGWG+SDDRHP++  L    RRA R +LQLFAAAYLQYSRY
Sbjct  264  GFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQYSRY  323

Query  302  IDPNRGTSGSIFDVIDYLHRARQFGERVRGTLYCVGMSLWKRAVIKPFFRFPQCRVIFTS  361
            ++PN G +GS+FDVIDYL   ++  +++RG LYCVGMSLWKRAV KPFF  P CR+ F S
Sbjct  324  LNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKFIS  383

Query  362  LAHLQKNVKKQPLAKDAKLLIWSNGKPEVLAFAQQYQLPILRMEDGFIRSVGLGSNLVAP  421
             ++    VK   L+ DA++L W+NGK  ++ FA+Q ++P+LRMEDGFIRSVGLGSNLV+P
Sbjct  384  STQKLARVK---LSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPP  440

Query  422  LSLVTDDLGIYFNAQMPSRLEYILQNQQFSKSDLARASALRQQLIQANIGKYNVGSDGFS  481
            LSLVTDD++IYFNA+ PSRLEYILQNQ+F   D+  A  L++ L + +I+KYNVGS +F+
Sbjct  441  LSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFT  500

Query  482  LNAQGKRTLLVPGQVEDDASIRSGSPVIKRNLDLLKAVRAQNPDAYILYKPHPDVVSGNR  541
              + +K  +LVPGQVEDDASIR GSP I RNLDLL++VR +NP+AYI+YKPHPDVVSGNR
Sbjct  501  APSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNR  560

Query  542  IGKIDAQVALQYANEIVENANILDCIMQVDEVHTMTSLAGFEALLRGKVVHCYGLPFYSN  601
            IG I ++ A +YA++  E+A+IL C+   DE+HTMTSL+GFEALLRGK V CYGLPFY+ 
Sbjct  561  IGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAG  620

Query  602  WGLTIDqlqlprrsrlltltellaavlIYYPLYVSPANGQFINAEMAIAILKQQKAKQ-E  660
            WGLT D L +PRRSR L L +L+A+ LI YP Y+ P   Q INAE A  IL +QK  Q +
Sbjct  621  WGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKN  680

Query  661  SDGLNRSWLAKQWGKVIHLCRAL  683
            ++GL+R+ +AK+ GK+ +L R++
Sbjct  681  NNGLHRGCFAKKLGKIKQLYRSF  703

28) phyA in NC_002663


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  620 bits (2342),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 363/655 (56%), Positives = 499/655 (77%), Gaps = 7/655 (1%)

Query  48   KERTCILEWGYKASSKKARHFAQQHDLPYATIEDGFLRSIGLGVDGYPPFSLVYDDIGIY  107
            KE   ++ WG ++++ KAR FA +H+LP+ ++EDGFLRS+GLGV GYPP+S+VYDDIGIY
Sbjct  51   KEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIY  110

Query  108  YDINQPSRLENLILSQDVLLQEKVDQVEYAIELICTHNLSKYNHAI----DTPLQNTKRP  163
            YD  +PSRLE+LIL+ D +  E + Q + A+++I  H+LSKYNHA     D PL++  +P
Sbjct  111  YDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKP  170

Query  164  -IVLVVDQTYGDMAVTFGNAEQSDFLHMLERAIIENPTAEIWLKTHPDVMCGKKQGYLTE  222
              VL++DQT+GDMA+ +G A+ S F  M++ A+ ENP A+IW+KTHPDV+CGKKQGYLT+
Sbjct  171  ETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQ  230

Query  223  YQQFPRVKVLSEDFNSISLLKHVDKVYCVTSHTGFEALLLGKTVVTFGAAWFSGWGLTDD  282
              Q  RV +L+ED+N+ISLL++VDKVYCVTS+ GFEALL GK + TFG +W++GWG++DD
Sbjct  231  LAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDD  290

Query  283  RHAYIRQLKQSKRRAKRSLLQLFYAAYFQYCRYINPNTGKSGTLFDVIDYLIQAKKVTNQ  342
            RH+ I +L Q++RRA R+LLQLF AAY+QY RY+NPNTG +G+LFDVIDYL   K+  ++
Sbjct  291  RHPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDK  350

Query  343  LAGDIYCVGMRFWKRKVVQPFFQFPRCRLHFVLNVHELKRCIHEKSQAKIVVWGHSHIEV  402
            L G++YCVGM +WKR V +PFF+ P CRL F+ + + L R +    +A+I+ WG++   +
Sbjct  351  LRGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLAR-VKLSDDARILAWGNGKEAI  409

Query  403  VEYAKQQQLPLLRMEDGFLRSVGLGSNLTPPISLVLDDVGIYFDAQSRSRLEDILQHQSF  462
            V +A Q+++PLLRMEDGF+RSVGLGSNL PP+SLV DD++IYF+A++ SRLE ILQ+Q+F
Sbjct  410  VRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNF  469

Query  463  TLKDLQRAETLKKTLIEQHIGKYNVGHTHLCLTHIRQNKLLVVGQVENDASIQYGSPHIR  522
              +D+Q A  L+K L E+HI+KYNVG +++      +  +LV GQVE+DASI+YGSP+I 
Sbjct  470  DDQDFQTALKLQKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIY  529

Query  523  TNAELLCTVRKNNPQAYIIYKPHPDVVAGNRKNTDRLDDYRQYADFVVEKANILDCINQV  582
             N +LL TVR  NP+AYIIYKPHPDVV+GNR      +D  +YAD   E+A+IL C++  
Sbjct  530  RNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYA  589

Query  583  DEVHTMTSLAGFEALLREKKVHCYGLPFYSNWGLTVDHlslnrrsrklsllelIAGVLIY  642
            DE+HTMTSL+GFEALLR KKV CYGLPFY+ WGLT D L++ RRSR+L L +LIAG LI 
Sbjct  590  DEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIH  649

Query  643  YPQYIDPKTKTMIDVQRAVDILIEQRRKIKNNK-LHTNYFMNIFMKLKNVYSVLR  696
            YP+YI+P T   I+ + A +ILI Q+   KNN+ LH   F + + K+K++Y  ++
Sbjct  650  YPDYIHPETHQAINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704

29) NT08PM_0490 in NC_017764


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  619 bits (2340),  Expect = 2e-178, Method: Compositional matrix adjust.
 Identities = 363/655 (56%), Positives = 499/655 (77%), Gaps = 7/655 (1%)

Query  37   KERTCILEWGYKASSKKARHFAQQHDLPYATIEDGFLRSIGLGVDGYPPFSLVYDDIGIY  96
            KE   ++ WG ++++ KAR FA +H+LP+ ++EDGFLRS+GLGV GYPP+S+VYDDIGIY
Sbjct  51   KEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIY  110

Query  97   YDINQPSRLENLILSQDVLLQEKVDQVEYAIELICTHNLSKYNHAI----DTPLQNTKRP  152
            YD  +PSRLE+LIL+ D +  E + Q + A+++I  H+LSKYNHA     D PL++  +P
Sbjct  111  YDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKP  170

Query  153  -IVLVVDQTYGDMAVTFGNAEQSDFLHMLERAIIENPTAEIWLKTHPDVMCGKKQGYLTE  211
              VL++DQT+GDMA+ +G A+ S F  M++ A+ ENP A+IW+KTHPDV+CGKKQGYLT+
Sbjct  171  ETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQ  230

Query  212  YQQFPRVKVLSEDFNSISLLKHVDKVYCVTSHTGFEALLLGKTVVTFGAAWFSGWGLTDD  271
              Q  RV +L+ED+N+ISLL++VDKVYCVTS+ GFEALL GK + TFG +W++GWG++DD
Sbjct  231  LAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDD  290

Query  272  RHAYIRQLKQSKRRAKRSLLQLFYAAYFQYCRYINPNTGKSGTLFDVIDYLIQAKKVTNQ  331
            RH+ I +L Q++RRA R+LLQLF AAY+QY RY+NPNTG +G+LFDVIDYL   K+  ++
Sbjct  291  RHPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDK  350

Query  332  LAGDIYCVGMRFWKRKVVQPFFQFPRCRLHFVLNVHELKRCIHEKSQAKIVVWGHSHIEV  391
            L G++YCVGM +WKR V +PFF+ P CRL F+ + + L R +    +A+I+ WG++   +
Sbjct  351  LRGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLAR-VKLSDDARILAWGNGKEAI  409

Query  392  VEYAKQQQLPLLRMEDGFLRSVGLGSNLTPPISLVLDDVGIYFDAQSRSRLEDILQHQSF  451
            V +A Q+++PLLRMEDGF+RSVGLGSNL PP+SLV DD++IYF+A++ SRLE ILQ+Q+F
Sbjct  410  VRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNF  469

Query  452  TLKDLQRAETLKKTLIEQHIGKYNVGHTHLCLTHIRQNKLLVVGQVENDASIQYGSPHIR  511
              +D+Q A  L+K L E+HI+KYNVG +++      +  +LV GQVE+DASI+YGSP+I 
Sbjct  470  DDQDFQTALKLQKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIY  529

Query  512  TNAELLCTVRKNNPQAYIIYKPHPDVVAGNRKNTDHLDDYRQYADFVVEKANILDCINQV  571
             N +LL TVR  NP+AYIIYKPHPDVV+GNR      +D  +YAD   E+A+IL C++  
Sbjct  530  RNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYA  589

Query  572  DEVHTMTSLAGFEALLREKKVHCYGLPFYSNWGLTVDHlslnrrsrklsllelIAGVLIY  631
            DE+HTMTSL+GFEALLR KKV CYGLPFY+ WGLT D L++ RRSR+L L +LIAG LI 
Sbjct  590  DEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIH  649

Query  632  YPQYIDPKTKTMIDVQRAVDILIEQRRKIKNNK-LHTNYFMNIFMKLKNVYSVLR  685
            YP+YI+P T   I+ + A +ILI Q+   KNN+ LH   F + + K+K++Y  ++
Sbjct  650  YPDYIHPETHQAINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704

30) phyA in NC_016808


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  616 bits (2326),  Expect = 2e-177, Method: Compositional matrix adjust.
 Identities = 361/655 (56%), Positives = 499/655 (77%), Gaps = 7/655 (1%)

Query  37   KERTCILEWGYKASSKKARYFAQQHDLPYATIEDGFLRSIGLGVDGYPPFSLVYDDIGIY  96
            KE   ++ WG ++++ KAR FA +H+LP+ ++EDGFLRS+GLGV GYPP+S+VYDDIGIY
Sbjct  51   KEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIY  110

Query  97   YDINQPSRLENLILSQDVLLQEKVDQVEYAIELICTHNLSKYNHAI----DTPLQNTKRP  152
            YD  +PSRLE+LIL+ D +  E + Q + A+++I  H+LSKYNHA     D PL++  +P
Sbjct  111  YDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKP  170

Query  153  -IVLVVDQTYGDMAVTFGNAEQSDFLHMLERAIIENPTAEIWLKTHPDVMCGKKQGYLTE  211
              VL++DQT+GDMA+ +G A+ S F  M++ A+ ENP A+IW+KTHPDV+CGKKQGYLT+
Sbjct  171  ETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQ  230

Query  212  YQQFPRVKVLSEDFNSISLLKHVDKVYCVTSHTGFEALLLGKTVVTFGAAWFSGWGLTDD  271
              Q  RV +L+ED+N+ISLL++VDKVYCVTS+ GFEALL GK + TFG +W++GWG++DD
Sbjct  231  LAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDD  290

Query  272  RNAYIRQLKQSKRRAKRSLLQLFYAAYFQYCRYINPNTGKSGTLFDVIDYLIQAKKVTNQ  331
            R++ I +L Q++RRA R+LLQLF AAY+QY RY+NPNTG +G+LFDVIDYL   K+  ++
Sbjct  291  RHPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDK  350

Query  332  LAGDIYCVGMRFWKRKVVQPFFQFPRCRLHFVLNVHELKRCIHEKSQAKIVVWGHSHIEV  391
            L G++YCVGM +WKR V +PFF+ P CRL F+ + + L R +    +A+I+ WG++   +
Sbjct  351  LRGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLAR-VKLSDDARILAWGNGKEAI  409

Query  392  VEYAKQQQLPLLRMEDGFLRSVGLGSNLTPPISLVLDDVGIYFDAQSRSRLEDILQHQSF  451
            V +A Q+++PLLRMEDGF+RSVGLGSNL PP+SLV DD++IYF+A++ SRLE ILQ+Q+F
Sbjct  410  VRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNF  469

Query  452  TLKDLQRAETLKKTLIEQHIGKYNVGHTHLCLTHIRQNKLLVVGQVENDASIQYGSPHIR  511
              +D+Q A  L+K L E+HI+KYNVG +++      +  +LV GQVE+DASI+YGSP+I 
Sbjct  470  DDQDFQTALKLQKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIY  529

Query  512  TNAELLCTVRKNNPQAYIIYKPHPDVVAGNRKNTDRLDDYRQYADFVVEKANILDCINQV  571
             N +LL TVR  NP+AYIIYKPHPDVV+GNR      +D  +YAD   E+A+IL C++  
Sbjct  530  RNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYA  589

Query  572  DEVHTMTSLAGFEALLREKKVHCYGLPFYSNWGLTVDHlslnrrsrklsllelIAGVLIY  631
            DE+HTMTSL+GFEALLR KKV CYGLPFY+ WGLT D L++ RRSR+L L +LIAG LI 
Sbjct  590  DEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIH  649

Query  632  YPQYIDPKTKTMIDVQRAVDILIEKRRKIKNNK-LHTNYFMNIFMKLKNVYSVLR  685
            YP+YI+P T   I+ + A +ILI ++   KNN+ LH   F + + K+K++Y  ++
Sbjct  650  YPDYIHPETHQAINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK  704

31) phyA in NC_017027


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  605 bits (2285),  Expect = 3e-174, Method: Compositional matrix adjust.
 Identities = 366/683 (54%), Positives = 512/683 (75%), Gaps = 12/683 (1%)

Query  9    SKGMLKIPYLSGFFTQRLKMFSPFVTWKKERTCILEWGYKASSKKARYFAQQHDLPYATI  68
            S+G+ KIP LS ++ +    F  +    KE   ++ WG ++++ KAR FA +H+LP+ ++
Sbjct  28   SRGIRKIPHLSTLLPE----F-HICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIAL  82

Query  69   EDGFLRSIGLGVDGYPPFSLVYDDIGIYYDINQPSRLENLILSqdvllqeqvdqvKYAIE  128
            EDGFLRS+GLGV GYPP+S+VYDDIGIYYD  +PSRLE+LIL+ D +  E + Q + A++
Sbjct  83   EDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMD  142

Query  129  LICTHNLSKYNHAI----DTPLQNTKRP-IVLVVDQTYGDMAVTFGNAGQGDFLHMLERA  183
            +I  H+LSKYNHA     D PL++  +P  VL++DQT+GDMA+ +G A+ + F  M++ A
Sbjct  143  FILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQTA  202

Query  184  IIENPTAEIWLKIHPDVMCGKKQGYLTEYQQFPRVKVLSEDFNSISLLKHVDKVYCVTSH  243
            + ENP A+IW+K HPDV+CGKKQGYLT+  Q  RV +L+ED+N+ISLL++VDKVYCVTS+
Sbjct  203  LNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQ  262

Query  244  TGFEALLLGKTVVTFGAAWFSGWGLTDDRHAYIRQLKQSKRRAKRSFLQLFYSAYFQYCR  303
             GFEALL GK + TFG +W++GWG++DDRH+ I +L Q++RRA R++LQLF +AY+QY R
Sbjct  263  MGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQYSR  322

Query  304  YINPNTGKSGTLFDVIDYLIQAKKVTNQLAGDIYCVGMRFWKRKVVQPFFQFPRCRLHFV  363
            Y+NPNTG +G+LFDVIDYL   K+  ++L G++YCVGM +WKR V +PFF+ P CRL F+
Sbjct  323  YLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKFI  382

Query  364  QNIHELKRCIRDKSQAKVVVWGHSHSEEVEYAKQQQLPLLRMEDGFLRSIGLGSNLTPPI  423
             + + L R ++   +A+++ WG++    V +A Q+++PLLRMEDGF+RS+GLGSNL PP+
Sbjct  383  SSTQKLAR-VKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPL  441

Query  424  SLVLDDVGIYFDAQSRSRLEDILQHQSFNLRDLQLAEMLKKTLIAQHISKYNVGHTHLCL  483
            SLV DD++IYF+A++ SRLE ILQ+Q+F+ +D+Q A  L+K L  +HISKYNVG +++  
Sbjct  442  SLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTA  501

Query  484  THIRQNKLLVVGQVENDASIQYGSPHIRTNLDLLCTVRKNNLQAYIIYKPHPDVVAGNRK  543
                +  +LV GQVE+DASI+YGSP+I  NLDLL TVR  N +AYIIYKPHPDVV+GNR 
Sbjct  502  PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRI  561

Query  544  NTDRLDDYRQYADFVVEKANILDCINQVDEVHTMTSLAGFEALLREKKVHCYGLPFYSNW  603
                 +D  +YAD   E+A+IL C++  DE+HTMTSL+GFEALLR KKV CYGLPFY+ W
Sbjct  562  GHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGW  621

Query  604  GLTVDHlslnrrsrklsllelIAGVLIYYPQYIDPKTKTMIDVQRAVDILIEQRRKIKNN  663
            GLT D L++ RRSR+L L +LIAG LI YP+YI+P T   I+ + A +ILI Q+   KNN
Sbjct  622  GLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNN  681

Query  664  E-LHTNYFMNIFMKLKNVYSVLR  685
            + LH   F + + K+K++Y  ++
Sbjct  682  NGLHRGCFAKKLGKIKQLYRSFK  704

32) GEM_2747 in NC_018513


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  524 bits (1977),  Expect = 9e-150, Method: Compositional matrix adjust.
 Identities = 330/668 (50%), Positives = 470/668 (71%), Gaps = 34/668 (5%)

Query  44   LGWGKresgaraerwaeaaGVRTLRLEDGFLRSVSLGVLGDTALSIVIDDLGIYYDASRP  103
            +GWG R +  +A   A    +  + LEDGFLRS++LGV G  + SIV DD+GIYYD++RP
Sbjct  57   VGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRP  116

Query  104  SRLEMLVKDVATPDGERGDASRNEADRAMSLIVRHGLSKYNHAPDFVPPDDWRD----DA  159
            SRLE L+    T  +E    +  +A++AM +I++H LSKYNHAP++   +  R     ++
Sbjct  117  SRLEQLILAADTMPSE----TLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPET  172

Query  160  ILVIDQTRGDVAVRLGGADESSFREMLAAALAENPGKPVWIKTHPDVMCGKKAGYLVDAS  219
            +L+IDQT GD+A++ GGAD S+F  M+ +AL ENP   +W+KTHPDV+CGKK GYL + +
Sbjct  173  VLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLA  232

Query  220  FSDprvrllpvdvsppsllKRVGKVYAVSSQMGFEAQLCGKPVVTFGLPWYAGWGLTDDR  279
              + RV+LL+ D++P SLL+ V+KVY V+SQMGFEA LCGKP+ TFGLPWYAGWG++DDR
Sbjct  233  -QQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDR  291

Query  280  HADAP--IVAGRRGSATLHQLFDAAYLRYCRYIDPETGSRGTIFDVIAHLAKQRRLNEVT  337
            H++    + + RR++  L QLF AAYL+Y RY++P+TG  G++FDVI  LA  +R N+  
Sbjct  292  HPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKL  351

Query  338  RGELVCVGLSLWKRSVVAPFLRHGGARVRFVDSPGALRRLPPDASRRVVLWGARRPDVAA  397
            RGEL CVG+SLWKR+V  PF+   + R++F+ S   L R+      R++ WG  +  +  
Sbjct  352  RGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVR  411

Query  398  VAQELGLPVLRMEDGFIRSVGLGSNLIAPLSLVIDDLGIYFDPRTPSRLEAILERGGFDD  457
             A++  +P+LRMEDGFIRSVGLGSNL++PLSLV DD++IYF++ TPSRLE IL+   FDD
Sbjct  412  FAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDD  471

Query  458  AELAEARSVRAALVDARIGKYNVGNGGVALPSPRPAKVILVPGQVEDDASIRTGSSWIST  517
             ++  A  ++  L + +I+KYNVG+++ + PS   + VILVPGQVEDDASIR GS+ I  
Sbjct  472  QDFQTALKLQKMLTENHISKYNVGSSDFTAPSTDKT-VILVPGQVEDDASIRYGSPQIYR  530

Query  518  NLGLLSSVRAAHPDAFVIFKPHPDVVSGNRAGAVPLHEARRLADVVAPESDVIACVEQAD  577
            NL+LL +VR  +P+A++I+KPHPDVVSGNR G ++ ++A R AD  A ++D+++C++ AD
Sbjct  531  NLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYAD  590

Query  578  EVHTMTSLTGFEALLRGKRVVCYGAPFYAGWGLTHDVFANASSGTGHATDASDTPDGHPV  637
            E+HTMTSLTGFEALLRGK+V CYG PFYAGWGLT+D+++ +                   
Sbjct  591  EIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIP-------------------  631

Query  638  WSRRCRRLALDELIAGTLLRYPRYVHPVSRAVIDAQHAITLLHAQRQ-STGQGKLKRNRL  696
              RR RRL L +LIAGTL++YP Y+HP ++  I+A+ A  +L  Q++    +  L R  +
Sbjct  632  --RRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNNNGLHRGCF  689

Query  697  KQQCGKVK  704
             ++ GK+K
Sbjct  690  AKKLGKIK  697

33) Entcl_3735 in NC_014618


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  500 bits (1887),  Expect = 9e-143, Method: Compositional matrix adjust.
 Identities = 324/684 (48%), Positives = 465/684 (68%), Gaps = 29/684 (4%)

Query  6    SSGIWRIPHLEALLG--QPCRRLSSLSAKARGLQAIAVWGERPTSQRPIALAKKAGLPVI  63
            S GI++IPHL +LL   + C+        ++  +A+  WG RPT++++ A+A    LP I
Sbjct  28   SRGIRKIPHLSTLLPEFHICK-------DGKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFIRSLGLGINGDPPLSIVTDDLGIYYDASRASRLEKLIQDSAGNAAFA-ARTLQA  122
             LEDGF+RSLGLG+ G PP SIV DD+GIYYD++R+SRLE+LI  +   ++ + A++ QA
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  IDMVVQNDLSKYNHAPPFSG-----SPTGKETVLVVDQTQGDVSVTLGGATERQFAAMLS  177
            +D ++Q++LSKYNHAP +S+     SP+  ETVL++DQT GD+++  GGA    F  M+ 
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  178  RAIAEHPDADIWVKTHPDVLCGKKRGYLSVLPDSSQVRLLAQDVSPQSLLRHVGHVYTVT  237
             A+ E+P+ADIWVKTHPDVLCGKK+GYL+ L++  +V+LLA+D++P SLL++V+ VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  238  SQYGFEALIAGKKVTCFGLPWYAGWGLTDDRHPLAARL--AERRGNASLSDLVSAAWFRY  295
            SQ GFEAL+ GK +T FGLPWYAGWG++DDRHP   RL  ++RR+  +L +L +AA ++Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  296  ARYVDPQTGTPCSLFRVLEHLKLQRAHHIIRRGALWAPGMTLWKGSIIKPFLKTTDNQLI  355
            +RY++P+TG + SLF V++ L   +  +   RG L   GM+LWK ++ KPF++    +L 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  356  FSKHP--------GNASVCIAWGVNGEKRWQPSAEKLGIPVWRMEDGFLRSAGLGSDLQP  407
            F            ++ +  +AWG NG       AE+  IP+ RMEDGF+RS GLGS+L P
Sbjct  381  FISSTQKLARVKLSDDARILAWG-NGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVP  439

Query  408  PLSLVLDKTGIYYDATRPSDLEHLLNHSQLTPAQRLRAGALQQTLVTSKVSKYNLGARWR  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A  LQ+ L  + +SKYN+G+   
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSS-D  498

Query  468  LPPEAAGRRVLLVPGQVENDASIATGTFSVNTNLSLLQTARSANPDAFIIYKPHPDVLAG  527
            + + ++++ V+LVPGQVE+DASI  G+  +  NL LL+T R  NP+A+IIYKPHPDV++G
Sbjct  499  FTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSG  558

Query  528  NRPGHIPEETAGCLADIIVRDADIIECIQQVDEVHTMTSLCGFEALIHGKAVHCYGMPFY  587
            NR GHI+ E A+  AD    +ADI+ C+Q  DE+HTMTSL GFEAL++GK V CYG+PFY
Sbjct  559  NRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFY  618

Query  588  AGWGLTHDIHHCQRRIRKLTLLDLIYQTLIIYPTYINPANKVIINVEQAIEILSFLPKEK  647
            AGWGLT+D+    RR R+L L +LI  TLI YP YI+P     IN E A +IL +  K+ 
Sbjct  619  AGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQIL-IRQKNM  677

Query  648  LAGTKPKSSRC-RRVLKKAINLYK  670
                +     C  + L K  +LY+
Sbjct  678  QKNNNGLHRGCFAKKLGKIKQLYR  701

34) Q7S_06565 in NC_017047


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  479 bits (1807),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 330/691 (48%), Positives = 471/691 (69%), Gaps = 42/691 (6%)

Query  6    SAGIQRIPHLEAFLGE--PCRKLSLLRPVPDGITRIAVWGYRPTGGKAVARAEQSGLPVL  63
            S GI++IPHL ++L E   C+              +  WG RPT  KA A A +  LP +
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFIRSLGLGVSGCPPFSMVLETQGMYYDASKPSTLEMLIRQREE--NQPLQDTARQ  121
             LEDGF+RSLGLGV+G PP+S+V +  G+YYD+++PS LE LI   +   ++ L + A+Q
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQ-AQQ  139

Query  122  AMQIIVEGDLSKYNQAPACTKAKP-----ECGAVLVVDQTFGDMAVVYGNAGAEQFEQML  176
            AM++I++ +LSKYN+AP  +   P        +VL++DQTFGDMA+ YG A+A  FE M+
Sbjct  140  AMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMF  199

Query  177  QAAMAENPTSEIWVKIHPDVLQGKKAGYFTQITELAQQDPRIKLLAENVSPQsllrvvsr  236
            Q+A+ ENP ++IWVK HPDVL GKK GY+TQ++    Q+ R+ LLAE+++P SLL+ V +
Sbjct  200  QTALNENPQADIWVKTHPDVLCGKKQGYLTQLA----QQHRVHLLAEDINPISLLQNVDK  255

Query  237  vyvvTSNYGFEALIAGKPVSVFGQPWYAGWGLTDDRHPQSASL--RARRGTASVEELFSA  294
            VY VTS+ GFEAL+ GKP++ FG PWYAGWG++DDRHP+   L    RR+T ++ +LF+A
Sbjct  256  VYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAA  315

Query  295  ACLRYSRYINPANGKSGTLFDVLSWLLMQRKHQQQRAGRLWSPGLTLWKRSILGPFLRTK  354
            A L+YSRY+NP  G +G+LFDV+  L   ++ +++  G L   G++LWKR++  PF+   
Sbjct  316  AYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVP  375

Query  355  SNKVNFSK--------RYAGEVACVVWGIKGEARWGAQAQQRQIPQWRMEDGFLRSAGLG  406
            S +++F          + +++   + WG +G       A+Q++IP  RMEDGF+RS GLG
Sbjct  376  SCRLKFISSTQKLARVKLSDDARILAWG-NGKEAIVRFAEQHHIPLLRMEDGFIRSVGLG  434

Query  407  SDLHPPLSLVLDKTGIYYDATRPSDLELLLSHSNLAPCqqqraatlrqrlVASKVSKYNL  466
            S+L PPLSLV D  +IY++A  PS LE +L + N+   + Q A  L++ L  + +SKYN+
Sbjct  435  SNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNV  494

Query  467  GAAFTLPAEATNKTVILVPGQVEDDASILTGTISLRTNSALLRTVRERNPGAYIIYKPHP  526
            G++  + A +T+KTVILVPGQVEDDASI  G+  +  N  LLRTVRERNP AYIIYKPHP
Sbjct  495  GSS-DFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHP  553

Query  527  DVLVGNRQGHIPAEDVSRWADSQALDADIIQCIQAADELHTLTSLSGFEALLHGKKVVCY  586
            DV+ GNR GHI++ED +R AD  A +ADI+ C+Q ADE+HT+TSL+GFEALL+GKKV CY
Sbjct  554  DVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCY  613

Query  587  GMPFYAGWGLTQDEHACSRRLRSLTLDDVVYQALIAYPSYINPQSREPILAEQAVELLAA  646
            G+PFYAGWGLTQD  + +RR R L L +++  +LI YP YI+P+++++I AE A ++L  
Sbjct  614  GLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673

Query  647  TPRAQMQ--------FTRVKAGRIVRYYRKL  669
                Q +        F++ K G+I + YR +
Sbjct  674  QKNMQKNNNGLHRGCFAK-KLGKIKQLYRSF  703

35) Rahaq_1360 in NC_015061


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  479 bits (1807),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 330/691 (48%), Positives = 471/691 (69%), Gaps = 42/691 (6%)

Query  6    SAGIQRIPHLEAFLGE--PCRKLSLLRPVPDGITRIAVWGYRPTGGKAVARAEQSGLPVL  63
            S GI++IPHL ++L E   C+              +  WG RPT  KA A A +  LP +
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFIRSLGLGVSGCPPFSMVLETQGMYYDASKPSTLEMLIRQREE--NQPLQDTARQ  121
             LEDGF+RSLGLGV+G PP+S+V +  G+YYD+++PS LE LI   +   ++ L + A+Q
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQ-AQQ  139

Query  122  AMQIIVEGDLSKYNQAPACTKAKP-----ECGAVLVVDQTFGDMAVVYGNAGAEQFEQML  176
            AM++I++ +LSKYN+AP  +   P        +VL++DQTFGDMA+ YG A+A  FE M+
Sbjct  140  AMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMF  199

Query  177  QAAMAENPTSEIWVKIHPDVLQGKKAGYFTQITELAQQDPRIKLLAENVSPQsllrvvsr  236
            Q+A+ ENP ++IWVK HPDVL GKK GY+TQ++    Q+ R+ LLAE+++P SLL+ V +
Sbjct  200  QTALNENPQADIWVKTHPDVLCGKKQGYLTQLA----QQHRVHLLAEDINPISLLQNVDK  255

Query  237  vyvvTSNYGFEALIAGKPVSVFGQPWYAGWGLTDDRHPQSASL--RARRGTASVEELFSA  294
            VY VTS+ GFEAL+ GKP++ FG PWYAGWG++DDRHP+   L    RR+T ++ +LF+A
Sbjct  256  VYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAA  315

Query  295  ACLRYSRYINPANGKSGTLFDVLSWLLMQRKHQQQRAGRLWSPGLTLWKRSILGPFLRTK  354
            A L+YSRY+NP  G +G+LFDV+  L   ++ +++  G L   G++LWKR++  PF+   
Sbjct  316  AYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVP  375

Query  355  SNKVNFSK--------RYAGEVACVVWGIKGEARWGAQAQQRQIPQWRMEDGFLRSAGLG  406
            S +++F          + +++   + WG +G       A+Q++IP  RMEDGF+RS GLG
Sbjct  376  SCRLKFISSTQKLARVKLSDDARILAWG-NGKEAIVRFAEQHHIPLLRMEDGFIRSVGLG  434

Query  407  SDLHPPLSLVLDKTGIYYDATRPSDLELLLSHSNLAPCqqqraatlrqrlVASKVSKYNL  466
            S+L PPLSLV D  +IY++A  PS LE +L + N+   + Q A  L++ L  + +SKYN+
Sbjct  435  SNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNV  494

Query  467  GAAFTLPAEATNKTVILVPGQVEDDASILTGTISLRTNSALLRTVRERNPGAYIIYKPHP  526
            G++  + A +T+KTVILVPGQVEDDASI  G+  +  N  LLRTVRERNP AYIIYKPHP
Sbjct  495  GSS-DFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHP  553

Query  527  DVLVGNRQGHIPAEDVSRWADSQALDADIIQCIQAADELHTLTSLSGFEALLHGKKVVCY  586
            DV+ GNR GHI++ED +R AD  A +ADI+ C+Q ADE+HT+TSL+GFEALL+GKKV CY
Sbjct  554  DVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCY  613

Query  587  GMPFYAGWGLTQDEHACSRRLRSLTLDDVVYQALIAYPSYINPQSREPILAEQAVELLAA  646
            G+PFYAGWGLTQD  + +RR R L L +++  +LI YP YI+P+++++I AE A ++L  
Sbjct  614  GLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673

Query  647  TPRAQMQ--------FTRVKAGRIVRYYRKL  669
                Q +        F++ K G+I + YR +
Sbjct  674  QKNMQKNNNGLHRGCFAK-KLGKIKQLYRSF  703

36) wcbA in NC_010170


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  461 bits (1736),  Expect = 8e-131, Method: Compositional matrix adjust.
 Identities = 288/638 (46%), Positives = 433/638 (68%), Gaps = 11/638 (1%)

Query  35   ARDVDAIAGWGLRPTTRWPRAYAMRKSLPYVALEDGFLRSYAPGQRA-PSLSLVVDGDGI  93
            +++ +A+ GWGLRPTT+ +RA+A    LP++ALEDGFLRS + G  + P+ S+V D+ GI
Sbjct  50   GKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGI  109

Query  94   YYAAGSGSSLETLLNSDADLLHGIEDACARARDLICRAQLGKYNAAPSLPAG--MLGAGD  151
            YY +   S LE L+ +   +         +A D+I + +L+KYN AP L+ +  + +++ 
Sbjct  110  YYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSK  169

Query  152  RGRVLVVDQTVGDAAIVHGGANAATFERMLAAALNENPGATVYIKTHPEVGGGAKQGYYS  211
               VL++DQT GD AI  GGA+A+TFE M+ +ALNENP A + +KTHP+V  G KQGY +
Sbjct  170  PETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLT  229

Query  212  SLAPMARVVLITEPVSPMSLVSHMDRVYVATSHLGFEALLAGKPVTCFGTPWYAGWGVTE  271
             LA   RV L++E ++P+SL+ ++D+VY  TS++GFEALL GKP+T FG PWYAGWGV++
Sbjct  230  QLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSD  289

Query  272  DRQACAHRM----RR--RSVQELFAAAYFHYSRYLDPTTHGEGSIFHAIDWLTRQKLMAE  325
            DR++  +R+    RR  R++ +LFAAAY++YSRYL+P T   GS+F+ ID L+  K   +
Sbjct  290  DRHPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKND  349

Query  326  HMQGRSIAVGFRRWKARHVREFLGLDASRVHFVRNARAAARLAPGPQDRLVVWGNDSVDQ  385
             ++G    VG   WK    + F+ + + R+ F+ +++  AR+  + + R++ WGN+    
Sbjct  350  KLRGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAI  409

Query  386  VRCLARRVGAKLLRMEDGFLRSVGLGSDFVPPLSLVLDGSGMYFDPREPSDLENLLNQHA  445
            VR +A +    LLRMEDGF+RSVGLGS++VPPLSLV D+ ++YF++  PS LE +L+++ 
Sbjct  410  VR-FAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQN  468

Query  446  FSVADLCRARAIRQSITDLGLTKYNIEQRRAPEWRAKGKRIILVPGQVEDDASIRYGCGE  505
            F   D+  A  +++ +T+  ++KYN+         + +K +ILVPGQVEDDASIRYG  +
Sbjct  469  FDDQDFQTALKLQKMLTENHISKYNVGSSDFTA-PSTDKTVILVPGQVEDDASIRYGSPQ  527

Query  506  VRSNLGLLQATRAEHPEAYIVYKPHPDVRARNRAGRMHLSRAMQYADEVELSCSVVSCIE  565
            +  NL+LL++ R  +P+AYI+YKPHPDV + NR G++    A +YAD+      +++C++
Sbjct  528  IYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQ  587

Query  566  ACDEVHTMTSLTGFDALLRNKRVVVYGRPFYAGWGLTIDKLPMARRTRTLNLDELVAGTL  625
              DE+HTMTSLTGF+ALLR K+V  YG PFYAGWGLT D LP++RR+R L+L +L+AGTL
Sbjct  588  YADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTL  647

Query  626  LHYPLYWDPVLKGYTTCEATINQLVRQRNAIIAARGEH  663
            +HYP Y +P        E++ + L+RQ+N      G H
Sbjct  648  IHYPDYIHPETHQAINAETAAQILIRQKNMQKNNNGLH  685

37) Cpha266_2331 in NC_008639


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  461 bits (1736),  Expect = 8e-131, Method: Compositional matrix adjust.
 Identities = 292/689 (43%), Positives = 464/689 (68%), Gaps = 25/689 (3%)

Query  13   SKGMRRIPFLGELLGE-EICFPGEVFDATISAAAGWGLRPSMQRAKRYAERYELPLLSLE  71
            S+G+R+IP L+ LL E +IC  G   +A +    GWGLRP+ ++A+ +A   +LP+++LE
Sbjct  28   SRGIRKIPHLSTLLPEFHICKDGKEAEAVV----GWGLRPTTHKARAFAAEHQLPFIALE  83

Query  72   DGFLRSYGTG-EGFPPVSIVVDEFGIYFDSTRPSALERLLESKTDLIAGIEADVDRAVRL  130
            DGFLRS G G  G+PP SIV D++GIY+D+TRPS LE+L+ +   + +   A+ ++A+ +
Sbjct  84   DGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDF  143

Query  131  IVKHRLSKYNHAPDLSPGTL--GENDVMRVLVIDQTFGDSSVVYGDADERSFMNMLEAAL  188
            I++H+LSKYNHAP+LS +    + +    VL+IDQTFGD ++ YG+AD  +F  M+++AL
Sbjct  144  ILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQTAL  203

Query  189  EENPLATVYVKTHPEVISGRKKGYLTGVQEIRRVVFLRQAIDPYALVAEMDRVYTVSSTM  248
            +ENP A + VKTHP+V+ G+K+GYLT + + +RV +L + I+P +L+ ++D+VY V+S M
Sbjct  204  NENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQM  263

Query  249  AFEALLAGKPVTCFGMPWYAGWGVTDDRCS------CGRRTKRRSVSELFAAAYMHYARY  302
            +FEALL GKP+T FG+PWYAGWGV+DDR +        +R   R++ +LFAAAY++Y+RY
Sbjct  264  GFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQYSRY  323

Query  303  LDPVTHRRGSLFDVIGWLVRQREMADRYPGRMICQGFRKWKAVNVRPFLSLNPQNTLFAK  362
            L+P T   GSLFDVI+ L   +   D+  G + C G   WK    +PF+++ +    F  
Sbjct  324  LNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKFIS  383

Query  363  SDAEARQLRVGPEDLFVRWGIGGESEPGVSAPDCGPRRLCMEDGFVRSVGLGSDLILPLS  422
            S     +++++ +  ++ WG G E+    +  +  P  L MEDGF+RSVGLGS+L+ PLS
Sbjct  384  STQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIP-LLRMEDGFIRSVGLGSNLVPPLS  442

Query  423  VVLDERGIYFDPNRPSDLENLLNAASFTAGELAEAERVRRFIVTHGITKYNIDTRRQPTW  482
            +V D+ +IYF+++ PS LE +L+  +F   ++  A ++++ +  + I+KYN+++    + 
Sbjct  443  LVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTA-  501

Query  483  QTGGRRVVFVPGQVEDDASILFGSRFVRTNMELLRKVRESLPEAFIVYKPHPDVLSGNRS  542
             + ++ V++VPGQVEDDASI +GS  +  N++LLR VRE  P+A+I+YKPHPDV+SGNR 
Sbjct  502  PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRI  561

Query  543  GRVMDSEIQGLADVIEPVLSAVSCIEAAEEVHTMTSLTGFDALLRRKRVIVYGEPFYAGW  602
            G++   +    AD        ++C++ A+E+HTMTSLTGF+ALLR K+V  YG PFYAGW
Sbjct  562  GHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGW  621

Query  603  GLTVDTATDGVSFRRRNRRLTLDELVAGALLRYPIYWDSDLRGYTSCIAVLHR-IRDERV  661
            GLT D     +++ RR+RRL L +L+AG+L++YP Y +++ +   +  +  +  IR+  +
Sbjct  622  GLTQDL----LPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNM  677

Query  662  RLEANGKLEKLRVGSIRRQLRKLSILCNA  690
            + + NG    L+ G + ++L K+  L  +
Sbjct  678  QKNNNG----LHRGCFAKKLGKIKQLYRS  702

38) kpsC in NC_017390


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  459 bits (1730),  Expect = 3e-130, Method: Compositional matrix adjust.
 Identities = 298/686 (44%), Positives = 456/686 (67%), Gaps = 34/686 (4%)

Query  6    SSGIWRIPYLANFLRE--RCHKVALRHALPAEVDAIAVWGYRPSGKKEVRAAQSAGKTLM  63
            S GI++IP L+ +L E   C           E +A+  WG RP+  K    A      ++
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFIRSLGLGVEGASPFSMVVDRLGMYYDAGRPSTLERLIQDTPG-SSVLVAEAEDA  122
             LEDGF+RSLGLGV G +P+S+V D +G+YYD+ RPS LE+LI  +   +S  +A+A++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MRTIVNEDLSKFNHALPFKRTTPMPS----DVVLVVDQTAGDLSVKWGGGGATDFTRMVN  178
            M  I++++LSK+NHA  +    P+ S    + VL++DQT GD++++ GG++A+ F  M +
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  AALSENPYATIWVKVHPDVLSGSKQGYLGAVELDERVHLFTEDVSPQSLLRVVTKVYVVT  238
            +AL+ENP A IWVK HPDVL G KQGYL  +  ++RVHL++ED++P SLL+ V KVY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQLGFEALLAGKPVVCFGLPWYSAWGLTDDRHSGAACL--AERRGRASLTALFTAAYLRY  296
            SQ+GFEALL GKP+  FGLPWY++WG++DDRH+    L  ++RR+  +L  LF+AAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  SRYIHPASGQPARLTEVLEWLVRERRHGLQRVGHLWAPGLPLWKATMVKPFLHTRDNQLT  356
            SRY++P +G+++ L +V++ L   +R   +  G+L   G++LWK ++ KPF++    +L 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  MAR------RCRPAEAC--VVWGIKGEHRWGRLAQQRGIPVWRMENGLLRSSGHGAAQKP  408
                     R + ++    + WG +G +   R+A+Q+ IP+ RME+G++RS G G+   P
Sbjct  381  FISSTQKLARVKLSDDARILAWG-NGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVP  439

Query  409  PLSLVLDKQGIYYDARRPSDLEQMLNNSQLSAQQATRAQRLHQRLVEQRTVKQDVDHFQL  468
            PLSLV D  +IY++A  PS LE +L+N ++  Q+   A +L++ L E++  K +V+  ++
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  469  PAAAANRLAILVLGQVEDDISLATGALGVRTNHDLLHRVRENYPQAFIFYKPHPNALAGD  528
             A+++++  ILV GQVEDD S+  G+  +  N DLL+ VRE  P+A+I+YKPHP+ ++G+
Sbjct  500  TAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGN  559

Query  529  LKGDISPDALSRLADFDARDVDIIPCIMQADEVHTMTSLWGFEALLHGKRVHCYGLPFYA  588
              G+ISP+  +R AD  A + DI+ C+  ADE+HTMTSL GFEALL+GK+V CYGLPFYA
Sbjct  560  RIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYA  619

Query  589  GWGLTDDELPCARRTRKLTPNDLIYQGLIAYPTYLDPHTYTVISPEDAVAILV------E  642
            GWGLT+D LP +RR+R+L   +LI   LI YP Y++P+T   I++E A  IL+       
Sbjct  620  GWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQK  679

Query  643  APHG--RPCTMKKIRRRLRHYFRQLM  666
              +G  R C  KK+  ++++ +R + 
Sbjct  680  NNNGLHRGCFAKKL-GKIKQLYRSFK  704

39) kpsC in NC_012214


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  459 bits (1730),  Expect = 3e-130, Method: Compositional matrix adjust.
 Identities = 298/686 (44%), Positives = 456/686 (67%), Gaps = 34/686 (4%)

Query  6    SSGIWRIPYLANFLRE--RCHKVALRHALPAEVDAIAVWGYRPSGKKEVRAAQSAGKTLM  63
            S GI++IP L+ +L E   C           E +A+  WG RP+  K    A      ++
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFIRSLGLGVEGASPFSMVVDRLGMYYDAGRPSTLERLIQDTPG-SSVLVAEAEDA  122
             LEDGF+RSLGLGV G +P+S+V D +G+YYD+ RPS LE+LI  +   +S  +A+A++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MRTIVNEDLSKFNHALPFKRTTPMPS----DVVLVVDQTAGDLSVKWGGGGATDFTRMVN  178
            M  I++++LSK+NHA  +    P+ S    + VL++DQT GD++++ GG++A+ F  M +
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  AALSENPYATIWVKVHPDVLSGSKQGYLGAVELDERVHLFTEDVSPQSLLRVVTKVYVVT  238
            +AL+ENP A IWVK HPDVL G KQGYL  +  ++RVHL++ED++P SLL+ V KVY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQLGFEALLAGKPVVCFGLPWYSAWGLTDDRHSGAACL--AERRGRASLTALFTAAYLRY  296
            SQ+GFEALL GKP+  FGLPWY++WG++DDRH+    L  ++RR+  +L  LF+AAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  SRYIHPASGQPARLTEVLEWLVRERRHGLQRVGHLWAPGLPLWKATMVKPFLHTRDNQLT  356
            SRY++P +G+++ L +V++ L   +R   +  G+L   G++LWK ++ KPF++    +L 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  MAR------RCRPAEAC--VVWGIKGEHRWGRLAQQRGIPVWRMENGLLRSSGHGAAQKP  408
                     R + ++    + WG +G +   R+A+Q+ IP+ RME+G++RS G G+   P
Sbjct  381  FISSTQKLARVKLSDDARILAWG-NGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVP  439

Query  409  PLSLVLDKQGIYYDARRPSDLEQMLNNSQLSAQQATRAQRLHQRLVEQRTVKQDVDHFQL  468
            PLSLV D  +IY++A  PS LE +L+N ++  Q+   A +L++ L E++  K +V+  ++
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  469  PAAAANRLAILVLGQVEDDISLATGALGVRTNHDLLHRVRENYPQAFIFYKPHPNALAGD  528
             A+++++  ILV GQVEDD S+  G+  +  N DLL+ VRE  P+A+I+YKPHP+ ++G+
Sbjct  500  TAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGN  559

Query  529  LKGDISPDALSRLADFDARDVDIIPCIMQADEVHTMTSLWGFEALLHGKRVHCYGLPFYA  588
              G+ISP+  +R AD  A + DI+ C+  ADE+HTMTSL GFEALL+GK+V CYGLPFYA
Sbjct  560  RIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYA  619

Query  589  GWGLTDDELPCARRTRKLTPNDLIYQGLIAYPTYLDPHTYTVISPEDAVAILV------E  642
            GWGLT+D LP +RR+R+L   +LI   LI YP Y++P+T   I++E A  IL+       
Sbjct  620  GWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQK  679

Query  643  APHG--RPCTMKKIRRRLRHYFRQLM  666
              +G  R C  KK+  ++++ +R + 
Sbjct  680  NNNGLHRGCFAKKL-GKIKQLYRSFK  704

40) kpsC in NC_017445


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  458 bits (1724),  Expect = 8e-130, Method: Compositional matrix adjust.
 Identities = 298/686 (44%), Positives = 456/686 (67%), Gaps = 34/686 (4%)

Query  6    SSGIWRIPYLANFLRE--RCHKVALRHALPAEVDAIAVWGYRPSGKKEVRAAQSAGKTLM  63
            S GI++IP L+ +L E   C           E +A+  WG RP+  K    A      ++
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFIRSLGLGVEGASPFSMVVDRLGMYYDAGRPSTLERLIQDTPG-SSVLVAEAEDA  122
             LEDGF+RSLGLGV G +P+S+V D +G+YYD+ RPS LE+LI  +   +S  +A+A++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MRTIVNEDLSKFNHALPFKRTTPMPS----DVVLVVDQTAGDLSVKWGGGGATDFTRMVN  178
            M  I++++LSK+NHA  +    P+ S    + VL++DQT GD++++ GG++A+ F  M +
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  AALSENPYATIWVKVHPDVLSGSKQGYLGAVELDERVHLFTEDVSPQSLLRVVTKVYVVT  238
            +AL+ENP A IWVK HPDVL G KQGYL  +  ++RVHL++ED++P SLL+ V KVY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQLGFEALLAGKPVVCFGLPWYAAWGLTDDRHSGAACL--AERRGRASLTALFTAAYLRY  296
            SQ+GFEALL GKP+  FGLPWYA+WG++DDRH+    L  ++RR+  +L  LF+AAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  SRYIHPASGQPARLTEVLEWLVRERRHGLQRVGHLWAPGLPLWKATMVKPFLHTRDNQLT  356
            SRY++P +G+++ L +V++ L   +R   +  G+L   G++LWK ++ KPF++    +L 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  MAR------RCRPAEAC--VVWGIKGEHRWGRLAQQRGIPVWRMENGLLRSSGHGAAQKP  408
                     R + ++    + WG +G +   R+A+Q+ IP+ RME+G++RS G G+   P
Sbjct  381  FISSTQKLARVKLSDDARILAWG-NGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVP  439

Query  409  PLSLVLDKQGIYYDARRPSDLEQMLNNSQLSAQQATRAQRLHQRLVEQRTVKQDVDHFQL  468
            PLSLV D  +IY++A  PS LE +L+N ++  Q+   A +L++ L E++  K +V+  ++
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  469  PAAAANRLAILVLGQVEDDISLATGALGVRTNHDLLHRVRESYPQAFIFYKPHPNALAGD  528
             A+++++  ILV GQVEDD S+  G+  +  N DLL+ VRE  P+A+I+YKPHP+ ++G+
Sbjct  500  TAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGN  559

Query  529  LKGDISSDALSRLADFDARDVDIIPCIMQADEVHTMTSLWGFEALLHGKRVHCYGLPFYA  588
              G+IS++  +R AD  A + DI+ C+  ADE+HTMTSL GFEALL+GK+V CYGLPFYA
Sbjct  560  RIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYA  619

Query  589  GWGLTDDELPCARRTRKLTPNDLIYQGLIAYPTYLDPHTYTVISPEDAVAILV------E  642
            GWGLT+D LP +RR+R+L   +LI   LI YP Y++P+T   I++E A  IL+       
Sbjct  620  GWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQK  679

Query  643  APHG--RPCTMKKIRRRLRHYFRQLM  666
              +G  R C  KK+  ++++ +R + 
Sbjct  680  NNNGLHRGCFAKKL-GKIKQLYRSFK  704

41) kpsC in NC_013971


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  452 bits (1704),  Expect = 3e-128, Method: Compositional matrix adjust.
 Identities = 293/654 (45%), Positives = 440/654 (68%), Gaps = 27/654 (4%)

Query  6    SSGIWRIPHLANFLRE--RCHKVALRHALPAEVDAIAVWGYRPSGKKEVRAAQSAGKTLM  63
            S GI++IPHL+ +L E   C           E +A+  WG RP+  K    A      ++
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFIRSQGLGVEGASPFSMVVDRLGMYYDAGRPSTLERMI--QDTPGNSVLAAEAED  121
             LEDGF+RS GLGV G +P+S+V D +G+YYD+ RPS LE++I   DT  +  LA +A++
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLA-QAQQ  139

Query  122  AMRTIVNEDLSKFNHALPFKRTTPIPS----EVVLVVDQTAGDLSVKWGGGGATDFSRMV  177
            AM  I++++LSK+NHA  +    P+ S    E VL++DQT GD++++ GG++A+ F  M 
Sbjct  140  AMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMF  199

Query  178  NAALSENPNATIWVKVHPDVLSGSRQGYLGAVELDDRVHLFTEDVSPQSLLRVVTKVYVV  237
            ++AL+ENP+A IWVK HPDVL G +QGYL  +  ++RVHL++ED++P SLL+ V KVY V
Sbjct  200  QTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCV  259

Query  238  TSQLGFEALLAGKPVVCFGLPWYAAWGLTDDRHSGAVCL--AQRRGRASLTALFTAAYLR  295
            TSQ+GFEALL GKP+  FGLPWYA+WG++DDRH+    L  +QRR+  +L  LF+AAYL+
Sbjct  260  TSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQ  319

Query  296  YSRYIHPSNGQPARLSEVLEWLVRERQHGLQRVGHLWAPGLPLWKATMVKPFLHTRDNQL  355
            YSRY++P+ G+++ L +V++ L   ++   +  G+L   G++LWK ++ KPF++    +L
Sbjct  320  YSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRL  379

Query  356  TMAR------RCRPAEAC--VVWGIKGERRWSKLAQQRGIPVWRMENGLLRSSGHGSAQK  407
                      R + ++    + WG +G     ++A+Q+ IP+ RME+G++RS G GS   
Sbjct  380  KFISSTQKLARVKLSDDARILAWG-NGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLV  438

Query  408  PPLSLVLDKQGIYYDARRPSDLEQMLNNSQLSAQQATRAQRLHQRLVEQRTGKQNVGHFR  467
            PPLSLV D  +IY++A  PS LE +L+N ++  Q+   A +L++ L E++ +K NVG   
Sbjct  439  PPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSD  498

Query  468  LPDAAAHRLAILVLGQVEDDISLATGALGVRTNHDLLHRVREDYPQAFIFYKPHPDALTG  527
            +  +++++  ILV GQVEDD S+  G+  +  N DLL+ VRE  P+A+I+YKPHPD ++G
Sbjct  499  FTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSG  558

Query  528  DMKGDISPDALSGLADFDARDVDIIQCIMQADEVHTMTSLWGFEALLHGKRVHCYGLPFY  587
            +  G+ISP+  +  AD  A + DI+ C+  ADE+HTMTSL GFEALL+GK+V CYGLPFY
Sbjct  559  NRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFY  618

Query  588  AGWGLTDDEFPCARRTRKLTRNDLIYQGLIAYPTYLDPHNYTVISPEDAVEILV  641
            AGWGLT+D +P +RR+R+L   +LI   LI YP Y++P+    I++E A +IL+
Sbjct  619  AGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILI  672


 Score =  118 bits (429),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 95/300 (32%), Positives = 169/300 (57%), Gaps = 13/300 (4%)

Query  34   AEVDAIAVWGYRPSGKKE-VRAAQSAGKTLMRLEDGFIRSQGLGVEGASPFSMVVDRLGM  92
            ++   I  WG   +GK   VR A+     L+R+EDGFIRS GLG +  +P+S+V D +++
Sbjct  394  SDDARILAWG---NGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSI  450

Query  93   YYDAGRPSTLERMIQDTPGNSVLAAEAEDAMRTIVNEDLSKFNHALPFKRTTPIPSEVVL  152
            Y++A  PS LE ++Q+   +      A    + + ++++SK+N + +   + +    V+L
Sbjct  451  YFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTAPSTDKTVIL  510

Query  153  VVDQTAGDLSVKWGGGGATDFSRMVNAALSENPNATIWVKVHPDVLSGSRQGYLGAVELD  212
            V +Q  +D S++ G+        ++ +    NPNA I  K HPDV+SG+R G +++ +  
Sbjct  511  VPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAA  570

Query  213  DRVHLFTEDVSPQSLLRVVTKVYVVTSQLGFEALLAGKPVVCFGLPWYAAWGLTDDRHSG  272
               +  +E+    + L+    +  +TS  GFEALL GK V C+GLP YA+WGLT+D    
Sbjct  571  RYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQD----  626

Query  273  AVCLAQRRGRASLTALFTAAYLRYSRYIHPSNGQPARLSEVLEWLVRER-----QHGLQR  327
             + +++R  R  L  L++++ ++Y+ YIHP   Q+       + L+R++     ++GL+R
Sbjct  627  LLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNNNGLHR  686

42) kpsC in NC_013961


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  452 bits (1704),  Expect = 3e-128, Method: Compositional matrix adjust.
 Identities = 293/654 (45%), Positives = 440/654 (68%), Gaps = 27/654 (4%)

Query  6    SSGIWRIPHLANFLRE--RCHKVALRHALPAEVDAIAVWGYRPSGKKEVRAAQSAGKTLM  63
            S GI++IPHL+ +L E   C           E +A+  WG RP+  K    A      ++
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFIRSQGLGVEGASPFSMVVDRLGMYYDAGRPSTLERMI--QDTPGNSVLAAEAED  121
             LEDGF+RS GLGV G +P+S+V D +G+YYD+ RPS LE++I   DT  +  LA +A++
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLA-QAQQ  139

Query  122  AMRTIVNEDLSKFNHALPFKRTTPIPS----EVVLVVDQTAGDLSVKWGGGGATDFSRMV  177
            AM  I++++LSK+NHA  +    P+ S    E VL++DQT GD++++ GG++A+ F  M 
Sbjct  140  AMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMF  199

Query  178  NAALSENPNATIWVKVHPDVLSGSRQGYLGAVELDDRVHLFTEDVSPQSLLRVVTKVYVV  237
            ++AL+ENP+A IWVK HPDVL G +QGYL  +  ++RVHL++ED++P SLL+ V KVY V
Sbjct  200  QTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCV  259

Query  238  TSQLGFEALLAGKPVVCFGLPWYAAWGLTDDRHSGAVCL--AQRRGRASLTALFTAAYLR  295
            TSQ+GFEALL GKP+  FGLPWYA+WG++DDRH+    L  +QRR+  +L  LF+AAYL+
Sbjct  260  TSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQ  319

Query  296  YSRYIHPSNGQPARLSEVLEWLVRERQHGLQRVGHLWAPGLPLWKATMVKPFLHTRDNQL  355
            YSRY++P+ G+++ L +V++ L   ++   +  G+L   G++LWK ++ KPF++    +L
Sbjct  320  YSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRL  379

Query  356  TMAR------RCRPAEAC--VVWGIKGERRWSKLAQQRGIPVWRMENGLLRSSGHGSAQK  407
                      R + ++    + WG +G     ++A+Q+ IP+ RME+G++RS G GS   
Sbjct  380  KFISSTQKLARVKLSDDARILAWG-NGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLV  438

Query  408  PPLSLVLDKQGIYYDARRPSDLEQMLNNSQLSAQQATRAQRLHQRLVEQRTGKQNVGHFR  467
            PPLSLV D  +IY++A  PS LE +L+N ++  Q+   A +L++ L E++ +K NVG   
Sbjct  439  PPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSD  498

Query  468  LPDAAAHRLAILVLGQVEDDISLATGALGVRTNHDLLHRVREDYPQAFIFYKPHPDALTG  527
            +  +++++  ILV GQVEDD S+  G+  +  N DLL+ VRE  P+A+I+YKPHPD ++G
Sbjct  499  FTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSG  558

Query  528  DMKGDISPDALSGLADFDARDVDIIQCIMQADEVHTMTSLWGFEALLHGKRVHCYGLPFY  587
            +  G+ISP+  +  AD  A + DI+ C+  ADE+HTMTSL GFEALL+GK+V CYGLPFY
Sbjct  559  NRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFY  618

Query  588  AGWGLTDDEFPCARRTRKLTRNDLIYQGLIAYPTYLDPHNYTVISPEDAVEILV  641
            AGWGLT+D +P +RR+R+L   +LI   LI YP Y++P+    I++E A +IL+
Sbjct  619  AGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILI  672


 Score =  118 bits (429),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 95/300 (32%), Positives = 169/300 (57%), Gaps = 13/300 (4%)

Query  34   AEVDAIAVWGYRPSGKKE-VRAAQSAGKTLMRLEDGFIRSQGLGVEGASPFSMVVDRLGM  92
            ++   I  WG   +GK   VR A+     L+R+EDGFIRS GLG +  +P+S+V D +++
Sbjct  394  SDDARILAWG---NGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSI  450

Query  93   YYDAGRPSTLERMIQDTPGNSVLAAEAEDAMRTIVNEDLSKFNHALPFKRTTPIPSEVVL  152
            Y++A  PS LE ++Q+   +      A    + + ++++SK+N + +   + +    V+L
Sbjct  451  YFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTAPSTDKTVIL  510

Query  153  VVDQTAGDLSVKWGGGGATDFSRMVNAALSENPNATIWVKVHPDVLSGSRQGYLGAVELD  212
            V +Q  +D S++ G+        ++ +    NPNA I  K HPDV+SG+R G +++ +  
Sbjct  511  VPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAA  570

Query  213  DRVHLFTEDVSPQSLLRVVTKVYVVTSQLGFEALLAGKPVVCFGLPWYAAWGLTDDRHSG  272
               +  +E+    + L+    +  +TS  GFEALL GK V C+GLP YA+WGLT+D    
Sbjct  571  RYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQD----  626

Query  273  AVCLAQRRGRASLTALFTAAYLRYSRYIHPSNGQPARLSEVLEWLVRER-----QHGLQR  327
             + +++R  R  L  L++++ ++Y+ YIHP   Q+       + L+R++     ++GL+R
Sbjct  627  LLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNNNGLHR  686

43) LF82_465 in NC_011993


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  450 bits (1697),  Expect = 1e-127, Method: Compositional matrix adjust.
 Identities = 329/656 (51%), Positives = 461/656 (71%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVDAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD GIYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDLSKYNLAPAFVADES----ERSDIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  +LSKYN AP +  D++     +++ VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYASWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYA+WG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSNLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLQTATNRLS  356
             RY++P+TGE ++LF V++ L   +R  ++  G L   G++LWK A+ KPF++ ++ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQKMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAEAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLV  527
            + P+   DK VILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYIIYKPHPDV+ 
Sbjct  500  TAPS--TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGNIPAELIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPF  587
            GNR G+I++E  A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK+V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTVDEHHCPRRERRLTIADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR RRL + +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 87.3 bits (312),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 108/317 (35%), Positives = 176/317 (56%), Gaps = 19/317 (5%)

Query  346  PFLQTATNRLSFSRRCTAASACVVWGVK-GEQQWRAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   ++ RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQKM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAEAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIY  519
               L+ D +L + +K   V+++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGNIPAELIAELADYQALDADI--IQCIQRADEVHTMTSLSGFEALLHG  577
            K HPDVL G+++G +    +A+    + L  DI  I  +Q  D V  +TS  GFEALL G
Sbjct  214  KTHPDVLCGKKQGYLTQ--LAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCG  271

Query  578  KQVHCYGLPFYAGWGLTVDEH-------HCPRRERRLTIADLIYQALIVYPTYIHPTRLQ  630
            K +  +GLP YAGWG++ D H       +  RR  R  + +L+  A + Y+ Y++P   +
Sbjct  272  KPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGE  330

Query  631  PITVEEAAEYLIQTPRK  647
            + ++ +  +YL    RK
Sbjct  331  AGSLFDVIDYLATVKRK  347

44) NRG857_14605 in NC_017634


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  450 bits (1697),  Expect = 1e-127, Method: Compositional matrix adjust.
 Identities = 329/656 (51%), Positives = 461/656 (71%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVDAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD GIYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDLSKYNLAPAFVADES----ERSDIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  +LSKYN AP +  D++     +++ VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYASWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYA+WG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSNLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLQTATNRLS  356
             RY++P+TGE ++LF V++ L   +R  ++  G L   G++LWK A+ KPF++ ++ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQKMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAEAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLV  527
            + P+   DK VILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYIIYKPHPDV+ 
Sbjct  500  TAPS--TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGNIPAELIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPF  587
            GNR G+I++E  A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK+V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTVDEHHCPRRERRLTIADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR RRL + +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 87.3 bits (312),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 108/317 (35%), Positives = 176/317 (56%), Gaps = 19/317 (5%)

Query  346  PFLQTATNRLSFSRRCTAASACVVWGVK-GEQQWRAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   ++ RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQKM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAEAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIY  519
               L+ D +L + +K   V+++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGNIPAELIAELADYQALDADI--IQCIQRADEVHTMTSLSGFEALLHG  577
            K HPDVL G+++G +    +A+    + L  DI  I  +Q  D V  +TS  GFEALL G
Sbjct  214  KTHPDVLCGKKQGYLTQ--LAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCG  271

Query  578  KQVHCYGLPFYAGWGLTVDEH-------HCPRRERRLTIADLIYQALIVYPTYIHPTRLQ  630
            K +  +GLP YAGWG++ D H       +  RR  R  + +L+  A + Y+ Y++P   +
Sbjct  272  KPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGE  330

Query  631  PITVEEAAEYLIQTPRK  647
            + ++ +  +YL    RK
Sbjct  331  AGSLFDVIDYLATVKRK  347

45) kpsC in NC_007974


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  450 bits (1695),  Expect = 1e-127, Method: Compositional matrix adjust.
 Identities = 295/638 (47%), Positives = 440/638 (69%), Gaps = 13/638 (2%)

Query  5    VVTPGLWRTPGLRRFFHEGVAFRPRQHVDAVLGWGDKPSSIKARAWAARRHLPFLSVEDG  64
            + + G+++ P L  ++ E    +  ++ +AV+GWG +P++ KARA AA ++LPF+++EDG
Sbjct  26   IPSRGIRKIPHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDG  85

Query  65   FLRSIHPGRSRQGLLSLVVDDLGIYYDAHHPSRLEQYI-AQgdasaaerdagaraMQLVL  123
            FLRS+  G +     S+V DD+GIYYD+ +PSRLEQ I A +  ++     + +AM+++L
Sbjct  86   FLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFIL  145

Query  124  QHRLSKYNHMGEL--QLPSSTPGKP-RVLVVDQTEGDLSLLRGGASADTFARMIAVALAD  180
            QH+LSKYNH  EL  + P  +P+KP  VL++DQT GD+++  GGA A TF  M+  AL +
Sbjct  146  QHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQTALNE  205

Query  181  HPAAEIWIKTHPDVLSGKRRGHYEQCRLDSRVHFLAQECCPLSLLTQMDHVYVATSHMGF  240
            +P A+IW+KTHPDVL GK++G   Q   + RVH+LA++  P+SLL ++D VY  TS+MGF
Sbjct  206  NPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGF  265

Query  241  EALMVGKPVTCFGLPWYAGWGLTHDVHPEaar-lalrrggKRNVVDLFVAAYIQYTRYIH  299
            EAL+ GKP+T FGLPWYAGWG+++D HPE  R +  +R + RN+++LF AAY+QY+RY++
Sbjct  266  EALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLN  325

Query  300  PVTGESASIFDVIKWLACNKAIEQEGRAPTYCVGMSLWKRATVMPFLAASTIRSLRHLSP  359
            P TGE++S+FDVI  LA  K  ++  R+  YCVGMSLWKRA   PF+  ++ R L+ +S+
Sbjct  326  PNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCR-LKFISS  384

Query  360  -DKLSR--LPQDSTIALWGDRHAGLIarararGLTVLQMEDGFVRSAGLGSDLHAPLSLA  416
             +KL+R  L++D+ I  WG+   +++  A  + + +L+MEDGF+RS GLGS+L +PLSL 
Sbjct  385  TQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLV  444

Query  417  IDPHGVHYDPKSASKLEQLLSTSTVNHDDAARGRRIRESLVRNGIDKYNLDHATTPVLPA  476
             D  ++ +++ ++S+LE +L     +++D   + +++  L  N I KYN++ +    + A
Sbjct  445  TDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSD---FTA  501

Query  477  QALGRRIILVIGQVEDDASVRIGSTLVKGNDALIAVTRRANPDAWLIYKSHPDVEAGNRI  536
             + ++ +ILV GQVEDDAS+R GS  +  N  L+   R  NP+A +IYK+HPDV +GNRI
Sbjct  502  PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRI  561

Query  537  GSLKPASET-LADQIITEASLGACLVLADEVHVMTSLSGFEALLRGKVVHCYGAPFYAGW  595
            G + P   +  ADQ   +A + +CL  ADE+H MTSL+GFEALLRGK V CYG PFYAGW
Sbjct  562  GHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGW  621

Query  596  GLTTDHFPLPRRQRRLTLDELVFVALCLYPRYRLPGVE  633
            GLT D +P+PRR RRL L +L+  +L  YP Y  P  +
Sbjct  622  GLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETH  659


 Score =  116 bits (424),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 110/339 (33%), Positives = 191/339 (57%), Gaps = 30/339 (8%)

Query  6    VTPGLWRTPGLRRFFHEG---VAF--------RPRQHVDA-VLGWGDKPSSIKARAWAAR  53
            V  +LW+ +  + FF+     + F        R +   DA +L+WG+   +I  R  A +
Sbjct  358  VGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAI-VR-FAEQ  415

Query  54   RHLPFLSVEDGFLRSIHPGRSRQGLLSLVVDDLGIYYDAHHPSRLEQYIAQgdasaaerd  113
            +H+P+L +EDGF+RS+  G +    LSLV DD++IY++A+ PSRLE YI Q +    +  
Sbjct  416  HHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLE-YILQNQNFDDQDF  474

Query  114  agaraMQLVL-QHRLSKYNHMGELQLPSSTPGKPRVLVVDQTEGDLSLLRGGASADTFAR  172
              A  +Q +L ++++SKYN +G  ++ +++ +K  +LV +Q E+D S+  G++       
Sbjct  475  QTALKLQKMLTENHISKYN-VGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLD  533

Query  173  MIAVALADHPAAEIWIKTHPDVLSGKRRGHYEQCRLDSRVHFLAQECCPLSLLTQM---D  229
            ++      +P A I  K HPDV+SG+R GH      +   ++  Q      +LT +   D
Sbjct  534  LLRTVRERNPNAYIIYKPHPDVVSGNRIGHISP---EDAARYADQTAEQADILTCLQYAD  590

Query  230  HVYVATSHMGFEALMVGKPVTCFGLPWYAGWGLTHDVHPEaarlalrrggKRNVV-DLFV  288
            ++   TS  GFEAL+ GK V+C+GLP YAGWGLT+D+ P      + R ++R  + +L+ 
Sbjct  591  EIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLP------IPRRSRRLELWQLIA  644

Query  289  AAYIQYTRYIHPVTGESASIFDVIKWLACNKAIEQEGRA  327
            ++ I+Y  YIHP T ++ +     + L  +K ++++  +
Sbjct  645  GTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNNNG  683

46) ECSF_2775 in NC_013654


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  450 bits (1695),  Expect = 2e-127, Method: Compositional matrix adjust.
 Identities = 328/656 (50%), Positives = 460/656 (71%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVDAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD GIYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDLSKYNLAPAFVADES----ERSDIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  +LSKYN AP +  D++     +++ VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYASWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYA+WG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSDLFTVlqwlqlqrnhqqqrnGYLWAPGLTLWKSAILKPFLQTATNRLS  356
             RY++P+TGE + LF V++ L   +  +++  G L   G++LWK A+ KPF++ ++ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQKMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAEAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLV  527
            + P+   DK VILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYIIYKPHPDV+ 
Sbjct  500  TAPS--TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKHVHCYGLPF  587
            GNR G+I++E +A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTVDEHRCPRRERKLTLADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR R+L L +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 86.0 bits (307),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 106/315 (34%), Positives = 173/315 (55%), Gaps = 15/315 (4%)

Query  346  PFLQTATNRLSFSRRCTAASACVVWGVKGEQQW-RAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   +  RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQKM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAEAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIY  519
               L+ D +L + +K   V+++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKH  579
            K HPDVL G+++G +      +  +  A D + I  +Q  D V  +TS  GFEALL GK 
Sbjct  214  KTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKP  273

Query  580  VHCYGLPFYAGWGLTVDEH-------RCPRRERKLTLADLIYQALIVYPTYIHPTRLQPI  632
            +  +GLP YAGWG++ D H       +  RR  +  L +L+  A + Y+ Y++P   ++ 
Sbjct  274  LTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGEAG  332

Query  633  TVEEAAEYLIQTPRK  647
            ++ +  +YL    RK
Sbjct  333  SLFDVIDYLATVKRK  347

47) kpsC in NC_017626


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  449 bits (1693),  Expect = 2e-127, Method: Compositional matrix adjust.
 Identities = 328/656 (50%), Positives = 462/656 (71%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQNVDAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         ++ +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD GIYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDLSKYNLAPAFVADES----ERSDIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  +LSKYN AP +  D++     +++ VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYAGWG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSDLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLRTATNRLS  356
             RY++P+TGE + LF V++ L   +R  ++  G L   G++LWK A+ KPF+  ++ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  YSRRC--------TAATACVVWGVKGEQQWRAEAQQKSLPLWRMEDGFlrssglgsdllp  408
            +            +  +  + WG +G +     A+Q  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWG-NGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAEAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLV  527
            + P+   DK VILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYIIYKPHPDV+ 
Sbjct  500  TAPS--TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGDISAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPF  587
            GNR G+IS+E +A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK+V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTVDEHHCPRREQKLTLADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR ++L L +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 87.6 bits (313),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 103/299 (35%), Positives = 169/299 (57%), Gaps = 15/299 (5%)

Query  362  TAATACVVWGVKGEQQW-RAEAQQKSLPLWRMEDGFlrssglgsdllpplslvldKRGIY  420
              A A V WG++   +  RA A +  LP+  +EDGFLRS GLG    PP S+V D  GIY
Sbjct  51   KEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIY  110

Query  421  YDATRPSDLEVLLNHSQLTLAQQM-RAEKLRQRLVESKLSKYN----LGADFSLPAEAKD  475
            YD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN    L+ D +L + +K 
Sbjct  111  YDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKP  170

Query  476  KKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLVGNRKGDIS  535
              V+++ +Q  +D +I+ G     +   +++T  + NP+A I  K HPDVL G+++G ++
Sbjct  171  ETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLT  229

Query  536  AELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPFYAGWGLTV  595
                 +  +  A D + I  +Q  D V  +TS  GFEALL GK +  +GLP YAGWG++ 
Sbjct  230  QLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSD  289

Query  596  DEH-------HCPRREQKLTLADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQTPRK  647
            D H       +  RR  +  L +L+  A + Y+ Y++P   ++ ++ +  +YL    RK
Sbjct  290  DRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRK  347

48) kpsC in NC_008563


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  449 bits (1693),  Expect = 2e-127, Method: Compositional matrix adjust.
 Identities = 328/656 (50%), Positives = 458/656 (70%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVNAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD GIYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDMSKYNLAPAFVADES----ERTNIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  ++SKYN AP +  D++     + + VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYASWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYA+WG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSDLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLRTPTNRLS  356
             RY++P+TGE + LF V++ L   +R  ++  G L   G++LWK A+ KPF+  P+ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAKAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVYKPHPDVLV  527
            + P+   DK VILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYI+YKPHPDV+ 
Sbjct  500  TAPST--DKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKHVHCYGLPF  587
            GNR G+I++E +A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTVDEHRCPRRERKLTLADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR R+L L +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 84.9 bits (303),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 106/315 (34%), Positives = 174/315 (56%), Gaps = 15/315 (4%)

Query  346  PFLRTPTNRLSFSRRCTAASACVVWGVK-GEQQWRAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   ++ RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAKAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVY  519
               L+ D +L + +K   V+++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKH  579
            K HPDVL G+++G +      +  +  A D + I  +Q  D V  +TS  GFEALL GK 
Sbjct  214  KTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKP  273

Query  580  VHCYGLPFYAGWGLTVDEH-------RCPRRERKLTLADLIYQALIVYPTYIHPTRLQPI  632
            +  +GLP YAGWG++ D H       +  RR  +  L +L+  A + Y+ Y++P   ++ 
Sbjct  274  LTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGEAG  332

Query  633  TVEEAAEYLIQTPRK  647
            ++ +  +YL    RK
Sbjct  333  SLFDVIDYLATVKRK  347

49) kpsC in NC_011750


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  449 bits (1693),  Expect = 2e-127, Method: Compositional matrix adjust.
 Identities = 328/656 (50%), Positives = 460/656 (71%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVDAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD GIYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDLSKYNLAPAFVADES----ERADIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  +LSKYN AP +  D++     +++ VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSQVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYAGWG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSDLFTVlqwlqlqrrhlqqrDGYLWAPGLTLWKSAILKPFLQTATNRLS  356
             RY++P+TGE + LF V++ L   +R  ++  G L   G++LWK A+ KPF++ ++ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQKMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAEAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVYKPHPDVLV  527
            + P+   DK VILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYI+YKPHPDV+ 
Sbjct  500  TAPS--TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKHVHCYGLPF  587
            GNR G+I++E +A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YSGWGLTVDEHRCPRRERKLTLADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQ  643
            Y+GWGLT D    PRR R+L L +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 85.5 bits (305),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 105/315 (34%), Positives = 173/315 (55%), Gaps = 15/315 (4%)

Query  346  PFLQTATNRLSFSRRCTAASACVVWGVKGEQQW-RAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   +  RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQKM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAEAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVY  519
               L+ D +L + +K   V+++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKH  579
            K HPDVL G+++G +      +  +  A D + I  +Q  D V  +TS  GFEALL GK 
Sbjct  214  KTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKP  273

Query  580  VHCYGLPFYSGWGLTVDEH-------RCPRRERKLTLADLIYQALIVYPTYIHPTRLQPI  632
            +  +GLP Y+GWG++ D H       +  RR  +  L +L+  A + Y+ Y++P   ++ 
Sbjct  274  LTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGEAG  332

Query  633  TVEEAAEYLIQTPRK  647
            ++ +  +YL    RK
Sbjct  333  SLFDVIDYLATVKRK  347

50) ECOK1_3363 in NC_017628


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  449 bits (1693),  Expect = 2e-127, Method: Compositional matrix adjust.
 Identities = 328/656 (50%), Positives = 458/656 (70%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVNAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD GIYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDMSKYNLAPAFVADES----ERTNIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  ++SKYN AP +  D++     + + VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYASWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYA+WG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSDLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLRTPTNRLS  356
             RY++P+TGE + LF V++ L   +R  ++  G L   G++LWK A+ KPF+  P+ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAKAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVYKPHPDVLV  527
            + P+   DK VILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYI+YKPHPDV+ 
Sbjct  500  TAPST--DKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKHVHCYGLPF  587
            GNR G+I++E +A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTVDEHRCPRRERKLTLADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR R+L L +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 84.9 bits (303),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 106/315 (34%), Positives = 174/315 (56%), Gaps = 15/315 (4%)

Query  346  PFLRTPTNRLSFSRRCTAASACVVWGVK-GEQQWRAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   ++ RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAKAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVY  519
               L+ D +L + +K   V+++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKH  579
            K HPDVL G+++G +      +  +  A D + I  +Q  D V  +TS  GFEALL GK 
Sbjct  214  KTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKP  273

Query  580  VHCYGLPFYAGWGLTVDEH-------RCPRRERKLTLADLIYQALIVYPTYIHPTRLQPI  632
            +  +GLP YAGWG++ D H       +  RR  +  L +L+  A + Y+ Y++P   ++ 
Sbjct  274  LTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGEAG  332

Query  633  TVEEAAEYLIQTPRK  647
            ++ +  +YL    RK
Sbjct  333  SLFDVIDYLATVKRK  347

51) kpsC in NC_017646


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  449 bits (1693),  Expect = 2e-127, Method: Compositional matrix adjust.
 Identities = 328/656 (50%), Positives = 460/656 (71%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVDAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD GIYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDLSKYNLAPAFVADES----ERADIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  +LSKYN AP +  D++     +++ VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSQVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYAGWG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSDLFTVlqwlqlqrrhlqqrDGYLWAPGLTLWKSAILKPFLQTATNRLS  356
             RY++P+TGE + LF V++ L   +R  ++  G L   G++LWK A+ KPF++ ++ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQKMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAEAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVYKPHPDVLV  527
            + P+   DK VILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYI+YKPHPDV+ 
Sbjct  500  TAPS--TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKHVHCYGLPF  587
            GNR G+I++E +A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YSGWGLTVDEHRCPRRERKLTLADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQ  643
            Y+GWGLT D    PRR R+L L +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 85.5 bits (305),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 105/315 (34%), Positives = 173/315 (55%), Gaps = 15/315 (4%)

Query  346  PFLQTATNRLSFSRRCTAASACVVWGVKGEQQW-RAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   +  RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQKM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAEAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVY  519
               L+ D +L + +K   V+++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKH  579
            K HPDVL G+++G +      +  +  A D + I  +Q  D V  +TS  GFEALL GK 
Sbjct  214  KTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKP  273

Query  580  VHCYGLPFYSGWGLTVDEH-------RCPRRERKLTLADLIYQALIVYPTYIHPTRLQPI  632
            +  +GLP Y+GWG++ D H       +  RR  +  L +L+  A + Y+ Y++P   ++ 
Sbjct  274  LTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGEAG  332

Query  633  TVEEAAEYLIQTPRK  647
            ++ +  +YL    RK
Sbjct  333  SLFDVIDYLATVKRK  347

52) ECOPMV1_03246 in NC_022370


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  449 bits (1693),  Expect = 2e-127, Method: Compositional matrix adjust.
 Identities = 328/656 (50%), Positives = 458/656 (70%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVNAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD GIYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDMSKYNLAPAFVADES----ERTNIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  ++SKYN AP +  D++     + + VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYASWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYA+WG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSDLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLRTPTNRLS  356
             RY++P+TGE + LF V++ L   +R  ++  G L   G++LWK A+ KPF+  P+ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAKAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVYKPHPDVLV  527
            + P+   DK VILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYI+YKPHPDV+ 
Sbjct  500  TAPST--DKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKHVHCYGLPF  587
            GNR G+I++E +A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTVDEHRCPRRERKLTLADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR R+L L +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 84.9 bits (303),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 106/315 (34%), Positives = 174/315 (56%), Gaps = 15/315 (4%)

Query  346  PFLRTPTNRLSFSRRCTAASACVVWGVK-GEQQWRAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   ++ RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAKAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVY  519
               L+ D +L + +K   V+++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKH  579
            K HPDVL G+++G +      +  +  A D + I  +Q  D V  +TS  GFEALL GK 
Sbjct  214  KTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKP  273

Query  580  VHCYGLPFYAGWGLTVDEH-------RCPRRERKLTLADLIYQALIVYPTYIHPTRLQPI  632
            +  +GLP YAGWG++ D H       +  RR  +  L +L+  A + Y+ Y++P   ++ 
Sbjct  274  LTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGEAG  332

Query  633  TVEEAAEYLIQTPRK  647
            ++ +  +YL    RK
Sbjct  333  SLFDVIDYLATVKRK  347

53) kpsC in NC_011742


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  449 bits (1693),  Expect = 2e-127, Method: Compositional matrix adjust.
 Identities = 328/656 (50%), Positives = 458/656 (70%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVNAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD GIYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDMSKYNLAPAFVADES----ERTNIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  ++SKYN AP +  D++     + + VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYASWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYA+WG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSDLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLRTPTNRLS  356
             RY++P+TGE + LF V++ L   +R  ++  G L   G++LWK A+ KPF+  P+ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAKAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVYKPHPDVLV  527
            + P+   DK VILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYI+YKPHPDV+ 
Sbjct  500  TAPST--DKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKHVHCYGLPF  587
            GNR G+I++E +A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTVDEHRCPRRERKLTLADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR R+L L +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 84.9 bits (303),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 106/315 (34%), Positives = 174/315 (56%), Gaps = 15/315 (4%)

Query  346  PFLRTPTNRLSFSRRCTAASACVVWGVK-GEQQWRAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   ++ RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAKAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVY  519
               L+ D +L + +K   V+++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKH  579
            K HPDVL G+++G +      +  +  A D + I  +Q  D V  +TS  GFEALL GK 
Sbjct  214  KTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKP  273

Query  580  VHCYGLPFYAGWGLTVDEH-------RCPRRERKLTLADLIYQALIVYPTYIHPTRLQPI  632
            +  +GLP YAGWG++ D H       +  RR  +  L +L+  A + Y+ Y++P   ++ 
Sbjct  274  LTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGEAG  332

Query  633  TVEEAAEYLIQTPRK  647
            ++ +  +YL    RK
Sbjct  333  SLFDVIDYLATVKRK  347

54) UM146_01650 in NC_017632


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  449 bits (1693),  Expect = 2e-127, Method: Compositional matrix adjust.
 Identities = 328/656 (50%), Positives = 458/656 (70%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVNAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD GIYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDMSKYNLAPAFVADES----ERTNIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  ++SKYN AP +  D++     + + VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYASWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYA+WG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSDLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLRTPTNRLS  356
             RY++P+TGE + LF V++ L   +R  ++  G L   G++LWK A+ KPF+  P+ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAKAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVYKPHPDVLV  527
            + P+   DK VILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYI+YKPHPDV+ 
Sbjct  500  TAPST--DKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKHVHCYGLPF  587
            GNR G+I++E +A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTVDEHRCPRRERKLTLADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR R+L L +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 84.9 bits (303),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 106/315 (34%), Positives = 174/315 (56%), Gaps = 15/315 (4%)

Query  346  PFLRTPTNRLSFSRRCTAASACVVWGVK-GEQQWRAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   ++ RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAKAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVY  519
               L+ D +L + +K   V+++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKH  579
            K HPDVL G+++G +      +  +  A D + I  +Q  D V  +TS  GFEALL GK 
Sbjct  214  KTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKP  273

Query  580  VHCYGLPFYAGWGLTVDEH-------RCPRRERKLTLADLIYQALIVYPTYIHPTRLQPI  632
            +  +GLP YAGWG++ D H       +  RR  +  L +L+  A + Y+ Y++P   ++ 
Sbjct  274  LTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGEAG  332

Query  633  TVEEAAEYLIQTPRK  647
            ++ +  +YL    RK
Sbjct  333  SLFDVIDYLATVKRK  347

55) kpsC in NC_007946


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  449 bits (1693),  Expect = 2e-127, Method: Compositional matrix adjust.
 Identities = 328/656 (50%), Positives = 458/656 (70%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVNAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD GIYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDMSKYNLAPAFVADES----ERTNIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  ++SKYN AP +  D++     + + VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYASWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYA+WG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSDLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLRTPTNRLS  356
             RY++P+TGE + LF V++ L   +R  ++  G L   G++LWK A+ KPF+  P+ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAKAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVYKPHPDVLV  527
            + P+   DK VILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYI+YKPHPDV+ 
Sbjct  500  TAPST--DKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKHVHCYGLPF  587
            GNR G+I++E +A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTVDEHRCPRRERKLTLADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR R+L L +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 84.9 bits (303),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 106/315 (34%), Positives = 174/315 (56%), Gaps = 15/315 (4%)

Query  346  PFLRTPTNRLSFSRRCTAASACVVWGVK-GEQQWRAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   ++ RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAKAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVY  519
               L+ D +L + +K   V+++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGDIPAELTAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKH  579
            K HPDVL G+++G +      +  +  A D + I  +Q  D V  +TS  GFEALL GK 
Sbjct  214  KTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKP  273

Query  580  VHCYGLPFYAGWGLTVDEH-------RCPRRERKLTLADLIYQALIVYPTYIHPTRLQPI  632
            +  +GLP YAGWG++ D H       +  RR  +  L +L+  A + Y+ Y++P   ++ 
Sbjct  274  LTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGEAG  332

Query  633  TVEEAAEYLIQTPRK  647
            ++ +  +YL    RK
Sbjct  333  SLFDVIDYLATVKRK  347

56) kpsC in NC_011745


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  449 bits (1692),  Expect = 3e-127, Method: Compositional matrix adjust.
 Identities = 327/656 (50%), Positives = 459/656 (70%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVDAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD GIYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDLSKYNLAPAFVADES----ERADIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  +LSKYN AP +  D++     +++ VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHISRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL+++ +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYAGWG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSDLFTVlqwlqlqrrhlqqrDGYLWAPGLTLWKSAILKPFLQTATNRLS  356
             RY++P+TGE + LF V++ L   +R  ++  G L   G++LWK A+ KPF++ ++ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPCDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  P  LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAEAKGKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLV  527
            + P+   +K VILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYIIYKPHPDV+ 
Sbjct  500  TAPS--TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGNIPAELIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPF  587
            GNR G+I++E  A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK+V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTVDEHHCPRRERRLTIADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR RRL + +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 86.8 bits (310),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 107/317 (34%), Positives = 174/317 (55%), Gaps = 19/317 (5%)

Query  346  PFLQTATNRLSFSRRCTAASACVVWGVKGEQQW-RAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   +  RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPCDLEVLLNHSQLTLAQQM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRP  LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAEAKGKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIY  519
               L+ D +L + +K   V+++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGNIPAELIAELADYQALDADI--IQCIQRADEVHTMTSLSGFEALLHG  577
            K HPDVL G+++G +    +A+    + L  DI  I  +Q  D V  +TS  GFEALL G
Sbjct  214  KTHPDVLCGKKQGYLTQ--LAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCG  271

Query  578  KQVHCYGLPFYAGWGLTVDEH-------HCPRRERRLTIADLIYQALIVYPTYIHPTRLQ  630
            K +  +GLP YAGWG++ D H       +  RR  R  + +L+  A + Y+ Y++P   +
Sbjct  272  KPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGE  330

Query  631  PITVEEAAEYLIQTPRK  647
            + ++ +  +YL    RK
Sbjct  331  AGSLFDVIDYLATVKRK  347

57) kpsC in NC_010498


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  447 bits (1684),  Expect = 1e-126, Method: Compositional matrix adjust.
 Identities = 329/656 (51%), Positives = 457/656 (70%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQNVDAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         ++ +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLGLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSLGLGV G PP S+V DD GIYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDLSKYNLAPAFVADES----ERSDIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  +LSKYN AP +  D++     +++ VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYAGWG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIYPQTGEVSNLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLQTATNRLS  356
             RY+ P+TGE ++LF V++ L   +R  ++  G L   G++LWK A+ KPF++ ++ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQKMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAEAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLV  527
            + P+   DK VILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYIIYKPHPDV+ 
Sbjct  500  TAPS--TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGNIPTELIAELADYQALDADIIQCILRADEVHTMTSLSGFEALLHGKHVHCYGLPF  587
            GNR G+I+ E  A  AD  A +ADI+ C+  ADE+HTMTSL+GFEALL+GK V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTVDEHRCPRRERKLTLADLIYQALIVYPTYIHPTWLQPITVEEAAEYLIK  643
            YAGWGLT D    PRR R+L L +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 83.6 bits (298),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 107/317 (34%), Positives = 173/317 (55%), Gaps = 19/317 (5%)

Query  346  PFLQTATNRLSFSRRCTAASACVVWGVKGEQQW-RAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   +  RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQKM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAEAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIY  519
               L+ D +L + +K   V+++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGNIPTELIAELADYQALDADIIQCIL--RADEVHTMTSLSGFEALLHG  577
            K HPDVL G+++G +    +A+    + L  DI    L    D V  +TS  GFEALL G
Sbjct  214  KTHPDVLCGKKQGYLTQ--LAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCG  271

Query  578  KHVHCYGLPFYAGWGLTVDEH-------RCPRRERKLTLADLIYQALIVYPTYIHPTWLQ  630
            K +  +GLP YAGWG++ D H       +  RR  +  L +L+  A + Y+ Y++P   +
Sbjct  272  KPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGE  330

Query  631  PITVEEAAEYLIKTPRK  647
            + ++ +  +YL    RK
Sbjct  331  AGSLFDVIDYLATVKRK  347

58) kpsC in NC_011751


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  447 bits (1683),  Expect = 1e-126, Method: Compositional matrix adjust.
 Identities = 327/656 (50%), Positives = 458/656 (70%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVDAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCCIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD  IYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDLSKYNLAPAFVADES----ERSDIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  +LSKYN AP +  D++     +++ VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFAALRATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY++ L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYAGWG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSNLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLQTATNRLS  356
             RY++P+TGE ++LF V++ L   +R  ++  G L   G++LWK A+ KPF++ ++ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLV  527
            + P+   DK +ILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYIIYKPHPDV+ 
Sbjct  500  TAPS--TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGNIPTELIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPF  587
            GNR G+I+ E  A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK+V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAAWGLTVDEHHCPRRERRLTIADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQ  643
            YA+WGLT D    PRR RRL + +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 85.2 bits (304),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 106/317 (34%), Positives = 175/317 (56%), Gaps = 19/317 (5%)

Query  346  PFLQTATNRLSFSRRCTAASACVVWGVKGEQQW-RAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   +  RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIY  519
               L+ D +L + +K   ++++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGNIPTELIAELADYQALDADI--IQCIQRADEVHTMTSLSGFEALLHG  577
            K HPDVL G+++G +    +A+    + L  DI  I  +Q  D V  +TS  GFEALL G
Sbjct  214  KTHPDVLCGKKQGYLTQ--LAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCG  271

Query  578  KQVHCYGLPFYAAWGLTVDEH-------HCPRRERRLTIADLIYQALIVYPTYIHPTRLQ  630
            K +  +GLP YA+WG++ D H       +  RR  R  + +L+  A + Y+ Y++P   +
Sbjct  272  KPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGE  330

Query  631  PITVEEAAEYLIQTPRK  647
            + ++ +  +YL    RK
Sbjct  331  AGSLFDVIDYLATVKRK  347

59) ECD_02818 in NC_012971


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  446 bits (1681),  Expect = 2e-126, Method: Compositional matrix adjust.
 Identities = 326/656 (50%), Positives = 458/656 (70%), Gaps = 28/656 (4%)

Query  6    SSGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVDAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV-KDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD GIYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDLSKYNLAPAFVADES----ERSDIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  +LSKYN AP +  D++     +++ VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFADLCATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYAGWG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDLQTGEVSDLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLQTATNRLS  356
             RY++ +TGE + LF V++ L   +R  ++  G L   G++LWK A+ KPF++ ++ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLINHSQLTLAQQMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE ++++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLV  527
            + P+   DK +ILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYIIYKPHPDV+ 
Sbjct  500  TAPS--TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGNIPAKLIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPF  587
            GNR G+I++   A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK+V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTADEHHCPRRERRLTIADLIYQALIVYPTYIHPIRLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR RRL + +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 87.8 bits (314),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 106/315 (34%), Positives = 173/315 (55%), Gaps = 15/315 (4%)

Query  346  PFLQTATNRLSFSRRCTAASACVVWGVKGEQQW-RAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   +  RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLINHSQLTLAQQM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE LI  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIY  519
               L+ D +L + +K   ++++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGNIPAKLIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQ  579
            K HPDVL G+++G +      +  +  A D + I  +Q  D V  +TS  GFEALL GK 
Sbjct  214  KTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKP  273

Query  580  VHCYGLPFYAGWGLTADEH-------HCPRRERRLTIADLIYQALIVYPTYIHPIRLQPI  632
            +  +GLP YAGWG++ D H       +  RR  R  + +L+  A + Y+ Y++P   ++ 
Sbjct  274  LTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGEAG  332

Query  633  TVEEAAEYLIQTPRK  647
            ++ +  +YL    RK
Sbjct  333  SLFDVIDYLATVKRK  347

60) kpsC in NC_012892


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  446 bits (1681),  Expect = 2e-126, Method: Compositional matrix adjust.
 Identities = 326/656 (50%), Positives = 458/656 (70%), Gaps = 28/656 (4%)

Query  6    SSGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVDAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV-KDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD GIYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDLSKYNLAPAFVADES----ERSDIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  +LSKYN AP +  D++     +++ VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFADLCATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYAGWG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDLQTGEVSDLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLQTATNRLS  356
             RY++ +TGE + LF V++ L   +R  ++  G L   G++LWK A+ KPF++ ++ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLINHSQLTLAQQMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE ++++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLV  527
            + P+   DK +ILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYIIYKPHPDV+ 
Sbjct  500  TAPS--TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGNIPAKLIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPF  587
            GNR G+I++   A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK+V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTADEHHCPRRERRLTIADLIYQALIVYPTYIHPIRLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR RRL + +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 87.8 bits (314),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 106/315 (34%), Positives = 173/315 (55%), Gaps = 15/315 (4%)

Query  346  PFLQTATNRLSFSRRCTAASACVVWGVKGEQQW-RAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   +  RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLINHSQLTLAQQM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE LI  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIY  519
               L+ D +L + +K   ++++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGNIPAKLIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQ  579
            K HPDVL G+++G +      +  +  A D + I  +Q  D V  +TS  GFEALL GK 
Sbjct  214  KTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKP  273

Query  580  VHCYGLPFYAGWGLTADEH-------HCPRRERRLTIADLIYQALIVYPTYIHPIRLQPI  632
            +  +GLP YAGWG++ D H       +  RR  R  + +L+  A + Y+ Y++P   ++ 
Sbjct  274  LTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGEAG  332

Query  633  TVEEAAEYLIQTPRK  647
            ++ +  +YL    RK
Sbjct  333  SLFDVIDYLATVKRK  347

61) ECB_02818 in NC_012967


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  446 bits (1681),  Expect = 2e-126, Method: Compositional matrix adjust.
 Identities = 326/656 (50%), Positives = 458/656 (70%), Gaps = 28/656 (4%)

Query  6    SSGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVDAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV-KDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD GIYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDLSKYNLAPAFVADES----ERSDIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  +LSKYN AP +  D++     +++ VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFADLCATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYAGWG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDLQTGEVSDLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLQTATNRLS  356
             RY++ +TGE + LF V++ L   +R  ++  G L   G++LWK A+ KPF++ ++ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLINHSQLTLAQQMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE ++++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLV  527
            + P+   DK +ILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYIIYKPHPDV+ 
Sbjct  500  TAPS--TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGNIPAKLIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPF  587
            GNR G+I++   A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK+V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTADEHHCPRRERRLTIADLIYQALIVYPTYIHPIRLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR RRL + +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 87.8 bits (314),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 106/315 (34%), Positives = 173/315 (55%), Gaps = 15/315 (4%)

Query  346  PFLQTATNRLSFSRRCTAASACVVWGVKGEQQW-RAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   +  RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLINHSQLTLAQQM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE LI  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIY  519
               L+ D +L + +K   ++++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGNIPAKLIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQ  579
            K HPDVL G+++G +      +  +  A D + I  +Q  D V  +TS  GFEALL GK 
Sbjct  214  KTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKP  273

Query  580  VHCYGLPFYAGWGLTADEH-------HCPRRERRLTIADLIYQALIVYPTYIHPIRLQPI  632
            +  +GLP YAGWG++ D H       +  RR  R  + +L+  A + Y+ Y++P   ++ 
Sbjct  274  LTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGEAG  332

Query  633  TVEEAAEYLIQTPRK  647
            ++ +  +YL    RK
Sbjct  333  SLFDVIDYLATVKRK  347

62) kpsC in NC_017631


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  444 bits (1672),  Expect = 9e-126, Method: Compositional matrix adjust.
 Identities = 325/656 (50%), Positives = 457/656 (70%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVDAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCCIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD  IYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDLSKYNLAPAFVADES----ERSDIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  +LSKYN AP +  D++     +++ VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFAALRATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY++ L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYAGWG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSNLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLQTATNRLS  356
             RY++P+TGE ++LF V++ L   +R  ++  G L   G++LWK A+ KPF++ ++ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERTPHAYIIYKPHPDVLV  527
            + P+   DK +ILVPGQVEDDASI+ G+  I  NL+LLRTVRER P+AYIIYKPHPDV+ 
Sbjct  500  TAPS--TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGNIPTELIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPF  587
            GNR G+I+ E  A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK+V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTVDEHHCPRREQKLTIADLIYQALIVYPTYIHPTLLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR ++L + +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 84.4 bits (301),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 105/317 (34%), Positives = 174/317 (55%), Gaps = 19/317 (5%)

Query  346  PFLQTATNRLSFSRRCTAASACVVWGVKGEQQW-RAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   +  RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERTPHAYIIY  519
               L+ D +L + +K   ++++ +Q  +D +I+ G     +   +++T  +  P+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGNIPTELIAELADYQALDADI--IQCIQRADEVHTMTSLSGFEALLHG  577
            K HPDVL G+++G +    +A+    + L  DI  I  +Q  D V  +TS  GFEALL G
Sbjct  214  KTHPDVLCGKKQGYLTQ--LAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCG  271

Query  578  KQVHCYGLPFYAGWGLTVDEH-------HCPRREQKLTIADLIYQALIVYPTYIHPTLLQ  630
            K +  +GLP YAGWG++ D H       +  RR  +  + +L+  A + Y+ Y++P   +
Sbjct  272  KPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGE  330

Query  631  PITVEEAAEYLIQTPRK  647
            + ++ +  +YL    RK
Sbjct  331  AGSLFDVIDYLATVKRK  347

63) kpsC in NC_017652


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  444 bits (1672),  Expect = 9e-126, Method: Compositional matrix adjust.
 Identities = 325/656 (50%), Positives = 457/656 (70%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVDAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCCIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD  IYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDLSKYNLAPAFVADES----ERSDIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  +LSKYN AP +  D++     +++ VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFAALRATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY++ L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYAGWG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSNLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLQTATNRLS  356
             RY++P+TGE ++LF V++ L   +R  ++  G L   G++LWK A+ KPF++ ++ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERTPHAYIIYKPHPDVLV  527
            + P+   DK +ILVPGQVEDDASI+ G+  I  NL+LLRTVRER P+AYIIYKPHPDV+ 
Sbjct  500  TAPS--TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGNIPTELIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPF  587
            GNR G+I+ E  A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK+V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTVDEHHCPRREQKLTIADLIYQALIVYPTYIHPTLLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR ++L + +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 84.4 bits (301),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 105/317 (34%), Positives = 174/317 (55%), Gaps = 19/317 (5%)

Query  346  PFLQTATNRLSFSRRCTAASACVVWGVKGEQQW-RAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   +  RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERTPHAYIIY  519
               L+ D +L + +K   ++++ +Q  +D +I+ G     +   +++T  +  P+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGNIPTELIAELADYQALDADI--IQCIQRADEVHTMTSLSGFEALLHG  577
            K HPDVL G+++G +    +A+    + L  DI  I  +Q  D V  +TS  GFEALL G
Sbjct  214  KTHPDVLCGKKQGYLTQ--LAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCG  271

Query  578  KQVHCYGLPFYAGWGLTVDEH-------HCPRREQKLTIADLIYQALIVYPTYIHPTLLQ  630
            K +  +GLP YAGWG++ D H       +  RR  +  + +L+  A + Y+ Y++P   +
Sbjct  272  KPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGE  330

Query  631  PITVEEAAEYLIQTPRK  647
            + ++ +  +YL    RK
Sbjct  331  AGSLFDVIDYLATVKRK  347

64) kpsC in NC_017651


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  444 bits (1672),  Expect = 9e-126, Method: Compositional matrix adjust.
 Identities = 325/656 (50%), Positives = 457/656 (70%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVDAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCCIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD  IYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDLSKYNLAPAFVADES----ERSDIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  +LSKYN AP +  D++     +++ VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFAALRATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY++ L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYAGWG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSNLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLQTATNRLS  356
             RY++P+TGE ++LF V++ L   +R  ++  G L   G++LWK A+ KPF++ ++ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERTPHAYIIYKPHPDVLV  527
            + P+   DK +ILVPGQVEDDASI+ G+  I  NL+LLRTVRER P+AYIIYKPHPDV+ 
Sbjct  500  TAPS--TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGNIPTELIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPF  587
            GNR G+I+ E  A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK+V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTVDEHHCPRREQKLTIADLIYQALIVYPTYIHPTLLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR ++L + +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 84.4 bits (301),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 105/317 (34%), Positives = 174/317 (55%), Gaps = 19/317 (5%)

Query  346  PFLQTATNRLSFSRRCTAASACVVWGVKGEQQW-RAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   +  RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERTPHAYIIY  519
               L+ D +L + +K   ++++ +Q  +D +I+ G     +   +++T  +  P+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGNIPTELIAELADYQALDADI--IQCIQRADEVHTMTSLSGFEALLHG  577
            K HPDVL G+++G +    +A+    + L  DI  I  +Q  D V  +TS  GFEALL G
Sbjct  214  KTHPDVLCGKKQGYLTQ--LAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCG  271

Query  578  KQVHCYGLPFYAGWGLTVDEH-------HCPRREQKLTIADLIYQALIVYPTYIHPTLLQ  630
            K +  +GLP YAGWG++ D H       +  RR  +  + +L+  A + Y+ Y++P   +
Sbjct  272  KPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGE  330

Query  631  PITVEEAAEYLIQTPRK  647
            + ++ +  +YL    RK
Sbjct  331  AGSLFDVIDYLATVKRK  347

65) kspC in NC_017644


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  444 bits (1672),  Expect = 9e-126, Method: Compositional matrix adjust.
 Identities = 325/656 (50%), Positives = 457/656 (70%), Gaps = 28/656 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQEVDAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         +E +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCCIYYDASKPSALEKLV-QDKAGNTALISQAREA  122
             LEDGF+RSL+LGV G PP S+V DD  IYYD+++PS LE+L+    +  +  ++QA++A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  123  MHTIVTGDLSKYNLAPAFVADES----ERSDIVLVVDQTFNDMSVTYGNAGPHEFaamle  178
            M+ I+  +LSKYN AP +  D++     +++ VL++DQTF DM++ YG A++  F  M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  179  aamaeNPQAEIWVKVHPDVLEGKKTGYFAALRATQRVRLIAENVSPQSLLRHVSRVYVVT  238
            +A+ ENPQA+IWVK HPDVL GKK GY++ L   +RV+L+AE+++P SLL++V +VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  239  SQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALL--SARRGSATLEELFAAAYLRY  296
            SQ GFEALL GKP+T FG PWYAGWG++DDRHP+   L  + RR++  L +LFAAAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  297  CRYIDPQTGEVSNLFTVlqwlqlqrrhlqqrNGYLWAPGLTLWKSAILKPFLQTATNRLS  356
             RY++P+TGE ++LF V++ L   +R  ++  G L   G++LWK A+ KPF++ ++ RL 
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  357  FSRRC--------TAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFlrssglgsdllp  408
            F            +  +  + WG   E   R   Q+  +PL RMEDGF+RS GLGS+L+P
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  409  plslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGA-DF  467
            PLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ DF
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDF  499

Query  468  SLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERTPHAYIIYKPHPDVLV  527
            + P+   DK +ILVPGQVEDDASI+ G+  I  NL+LLRTVRER P+AYIIYKPHPDV+ 
Sbjct  500  TAPS--TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  528  GNRKGNIPTELIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPF  587
            GNR G+I+ E  A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK+V CYGLPF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  588  YAGWGLTVDEHHCPRREQKLTIADLIYQALIVYPTYIHPTLLQPITVEEAAEYLIQ  643
            YAGWGLT D    PRR ++L + +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 84.4 bits (301),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 105/317 (34%), Positives = 174/317 (55%), Gaps = 19/317 (5%)

Query  346  PFLQTATNRLSFSRRCTAASACVVWGVKGEQQW-RAEAQRKSLPLWRMEDGFlrssglgs  404
            P L T    + + +    A A V WG++   +  RA A    LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERTPHAYIIY  519
               L+ D +L + +K   ++++ +Q  +D +I+ G     +   +++T  +  P+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGNIPTELIAELADYQALDADI--IQCIQRADEVHTMTSLSGFEALLHG  577
            K HPDVL G+++G +    +A+    + L  DI  I  +Q  D V  +TS  GFEALL G
Sbjct  214  KTHPDVLCGKKQGYLTQ--LAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCG  271

Query  578  KQVHCYGLPFYAGWGLTVDEH-------HCPRREQKLTIADLIYQALIVYPTYIHPTLLQ  630
            K +  +GLP YAGWG++ D H       +  RR  +  + +L+  A + Y+ Y++P   +
Sbjct  272  KPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGE  330

Query  631  PITVEEAAEYLIQTPRK  647
            + ++ +  +YL    RK
Sbjct  331  AGSLFDVIDYLATVKRK  347

66) kpsC in NC_004431


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  443 bits (1668),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 329/657 (51%), Positives = 462/657 (71%), Gaps = 30/657 (4%)

Query  6    SPGIWRIPHLEKFLA--QPCQKLSLLRPVPQNVDAIAVWGHRPSaakpvaiakaagkpvi  63
            S GI++IPHL  +L+  + C+         ++ +A+  WG RP++ K+ A+A     P I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  64   RLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLV--QDKAGNAALADQARE  121
             LEDGF+RSL+LGV G PP S+V DD GIYYD+++PS LE+L+   D   + +LA QA++
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLA-QAQQ  139

Query  122  AMHTIVTGDLSKYNLAPAFVADES----ERADIVLVVDQTFNDMSVTYGNAGPHefaaml  177
            AM+ I+  +LSKYN AP +  D++     +++ VL++DQTF DM++ YG A++  F  M+
Sbjct  140  AMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMF  199

Query  178  eaameeNPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSRVYVV  237
            ++A++ENPQA+IWVK HPDVL GKK GY+++L   +RV+L+AE+++P SLL++V +VY V
Sbjct  200  QTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCV  259

Query  238  TSQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALL--SARRGSATLEELFAAAYLR  295
            TSQ GFEALL GKP+T FG PWYAGWG++DDRHP+   L  + RR++  L +LFAAAYL+
Sbjct  260  TSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQ  319

Query  296  YCRYIDPLTGAASDLFTVlqwlqlqrnhqqqrnGYLWAPGLTLWKSAILKPFLCTATNRL  355
            Y RY++P TG A+ LF V++ L   +  +++  G L   G++LWK A+ KPF+  ++ RL
Sbjct  320  YSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRL  379

Query  356  SYSRRC--------TAATACVVWGVKGEQQWLAEAQQKSLPLWRMEDGFlrssglgsdll  407
             +            +  +  + WG +G +  +  A+Q  +PL RMEDGF+RS GLGS+L+
Sbjct  380  KFISSTQKLARVKLSDDARILAWG-NGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLV  438

Query  408  pplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGA-D  466
            PPLSLV D  +IY++A  PS LE +L++ ++   +   A KL++ L E+ +SKYN+G+ D
Sbjct  439  PPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSD  498

Query  467  FSLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVL  526
            F+ P+   DK +ILVPGQVEDDASI+ G+  I  NL+LLRTVRERNP+AYIIYKPHPDV+
Sbjct  499  FTAPS--TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVV  556

Query  527  VGNRKGNIPTELIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLP  586
             GNR G+I+ E  A  AD  A +ADI+ C+Q ADE+HTMTSL+GFEALL+GK+V CYGLP
Sbjct  557  SGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLP  616

Query  587  FYAGWGLTVDEHHCPRRERRLTIADLIYQALIVYPTYIHPTRLQPITVEEAAEYLIQ  643
            FYAGWGLT D    PRR RRL + +LI  +LI YP YIHP   Q+I  E AA+ LI+
Sbjct  617  FYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIR  673


 Score = 84.9 bits (303),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 105/317 (34%), Positives = 173/317 (55%), Gaps = 19/317 (5%)

Query  346  PFLCTATNRLSYSRRCTAATACVVWGVKGEQQWLAE-AQQKSLPLWRMEDGFlrssglgs  404
            P L T    +   +    A A V WG++   +     A +  LP+  +EDGFLRS GLG 
Sbjct  35   PHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGV  94

Query  405  dllpplslvldKRGIYYDATRPSDLEVLLNHSQLTLAQQM-RAEKLRQRLVESKLSKYN-  462
               PP S+V D  GIYYD+TRPS LE L+  ++   ++ + +A++  + +++  LSKYN 
Sbjct  95   AGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNH  154

Query  463  ---LGADFSLPAEAKDKKIILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIY  519
               L+ D +L + +K   ++++ +Q  +D +I+ G     +   +++T  + NP+A I  
Sbjct  155  APELSDDHPLRSPSKPETVLII-DQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV  213

Query  520  KPHPDVLVGNRKGNIPTELIAELADYQALDADI--IQCIQRADEVHTMTSLSGFEALLHG  577
            K HPDVL G+++G +    +A+    + L  DI  I  +Q  D V  +TS  GFEALL G
Sbjct  214  KTHPDVLCGKKQGYLTQ--LAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCG  271

Query  578  KQVHCYGLPFYAGWGLTVDEH-------HCPRRERRLTIADLIYQALIVYPTYIHPTRLQ  630
            K +  +GLP YAGWG++ D H       +  RR  R  + +L+  A + Y+ Y++P   +
Sbjct  272  KPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGE  330

Query  631  PITVEEAAEYLIQTPRK  647
            + ++ +  +YL    RK
Sbjct  331  AGSLFDVIDYLATVKRK  347

67) kpsC in NC_013282


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  439 bits (1653),  Expect = 3e-124, Method: Compositional matrix adjust.
 Identities = 306/653 (47%), Positives = 438/653 (68%), Gaps = 28/653 (4%)

Query  7    SKGIWRIPGLAHLLPM--PCRKLTPRRAIPDDITAIAVWGHRPSaaaaeararqagraVI  64
            S+GI++IP L+ LLP    C+          +  A+  WG RP++  A A A +   + I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  65   RLEDGFIRSAGPAVHGHPPLSLVIDYDGIYYDASKQSTLEKLIQDRPGNDAHC-EAAQEA  123
             LEDGF+RS G +V G PP S+V D  GIYYD+++ S LE+LI       ++    AQ+A
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  124  MRLIVQGDLAKYNHAP------PFDGAPETRAVLVVDQTAGDMSVTLGNASAASFRLMLE  177
            M +I+Q +L+KYNHAP      P+ +++   +VL++DQT GDM++  G A A++F LM++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  178  VACAENPGAEIWVKTHPDVVSGHKRGYLRDMCADGRVRQIAQDASPQSLLRCVERVYTVT  237
             A  ENP A+IWVKTHPDV+ G K+GYL ++  + RV+ +A+D +P SLL+ V++VY VT
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  238  SHYGFEALMAGKPVVCFGQPWYAGWGLTDDRHPaaatlaarrgkatll--tlFSAAYLRY  295
            S+ GFEAL+ GKP+  FG PWYAGWG++DDRHP    L   + +AT     LF+AAYL+Y
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY  320

Query  296  ARYLNPQTGEPGTLFDVLSWLTLQRRHQLALRGTLWTPGLTLWKRSIVKPFLATPYNRLR  355
            +RYLNP+TGE+G+LFDV+  L+  +R +  LRG L   G++LWKR++ KPF+  P  RL+
Sbjct  321  SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLK  380

Query  356  FMR--------RVPQADACVVWGTAGEARWQVAAQAHGLPVWRMEDAFLRSAGLGSDLFA  407
            F+         ++++    + WG + EA  + A Q H +P+ RMED+F+RS GLGS+L +
Sbjct  381  FISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLVP  439

Query  408  PLSLVLDKRGLYYDATRASDLEVALSEAHLTPAQEMRAERLRQQIIENGVSKYNAGGAWR  467
            PLSLV D  ++Y++A  +S LE  L + ++   +   A +L++ + EN +SKYN G++  
Sbjct  440  PLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSS-D  498

Query  468  LPSSAWGRRVLLVPGQVSDDASLAGGTKDIrtltallrlvrarNPRAYIVFKAHPDVAAG  527
            + +++ ++ V+LVPGQV DDAS+  G+ +I     LLR VR RNP AYI++K+HPDV +G
Sbjct  499  FTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSG  558

Query  528  NRSGEPSEQDALRWADCLATQADIAGVLEQVDEVHTLTSLTGFEALLRGKTVYCYGMPFY  587
            NR G+ S +DA R AD  A QADI   L+  DE+HT+TSLTGFEALLRGK V CYG+PFY
Sbjct  559  NRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFY  618

Query  588  AGWGLTHDEYTCPRRTRRLTLNALIHATLIDYPFYLHPTRKTPMSAEEAVARL  640
            AGWGLT+D    PRR+RRL L  LI +TLI+YP Y+HP    +++AE A   L
Sbjct  619  AGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQIL  671

68) ESA_03352 in NC_009778


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  437 bits (1647),  Expect = 9e-124, Method: Compositional matrix adjust.
 Identities = 305/645 (48%), Positives = 442/645 (69%), Gaps = 30/645 (4%)

Query  10   SKGIWRIAGLHHLLPM--PCRKLAPRRAIPDDVTAIAVWGRRPSaaaavaraskaglaVI  67
            S+GI++I+ L  LLP    C+          +  A+  WG RP++  A A A+   L+ I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  68   RLEDGFIRSCGPAAHGYPPLSLVIDYDGIYYDASQPSTLENLI--QDTAGNAALREAAQE  125
             LEDGF+RS G +  GYPP S+V D  GIYYD+++PS LE+LI   DT  + +L +A Q+
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQA-QQ  139

Query  126  AMRLIVEGDLAKYNHAP------PFDGSPDARAVLVVDQTAGDMSVTFGNASAASFRLML  179
            AM +I++ +L+KYNHAP      P+ +++ + +VL++DQT GDM++ +G A A++F LM+
Sbjct  140  AMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMF  199

Query  180  ESALAENPDAEIWVKTHPDVVHGGKRGYLRDIRANTRLRLITEDASPQSLLRCVSRVYTV  239
            ++AL ENP+A+IWVKTHPDV+ G K+GYL ++  + R++L++ED +P SLL+ V +VY V
Sbjct  200  QTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCV  259

Query  240  TSHFGFEALMAGKPVVCFGQPWYAGWGLTddrhpaaatlaarr--gdaSLLTLFSAAYLR  297
            TS+ GFEAL+ GKP+  FG PWYAGWG++DDRHP    L   +  +  +LL LF+AAYL+
Sbjct  260  TSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQ  319

Query  298  YARYLNPQTNQPGTLFDVLTWlalqrrhhlalrGTLWVPGLTLWKRSVVKPFLSTPRNQL  357
            Y+RYLNP+T ++G+LFDV+  LA  +R +  LRG L   G++LWKR+V KPF++ P  +L
Sbjct  320  YSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRL  379

Query  358  RFTR--------RAPQADACVVWGTAGEARWQSTAQARGMPVWRMEDAFLRSVGLGSDLF  409
            +F          + ++    + WG + EA  + + Q + +P+ RMED+F+RSVGLGS+L 
Sbjct  380  KFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLV  438

Query  410  APLSLVLDKRGLYYDATRASDLEIALNRVHLTPaeearaaalrrQIIESRVSKYNAGGAW  469
            +PLSLV D  ++Y++A  +S LE  L+  ++   +   A  L++ + E+++SKYN G++ 
Sbjct  439  PPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSS-  497

Query  470  RLPASAWGRRILLVPGQVSDDASLVGGTQGIRTIAALLRMVRARNPQAYIVFKPHPDVAC  529
             + A++ ++ ++LVPGQV DDAS+  G+  I     LLR VR RNP+AYI++KPHPDV  
Sbjct  498  DFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  530  GNRQGEPSTRDALRWADCLATQADIVDVLDQVDEVHTLTSLAGFEALLRGKTVFCYGMPF  589
            GNR G+ S  DA R AD  A QADI+  L+  DE+HT+TSL+GFEALLRGK V CYG+PF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  590  YAGWGLTHDEYPCPRRTRRLTLNALIHTTLIDYPFYLHPTRKTPI  634
            YAGWGLT+D  P PRR+RRL L  LI  TLI+YP Y+HP    +I
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAI  662

69) kpsC in NC_017933


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  435 bits (1639),  Expect = 4e-123, Method: Compositional matrix adjust.
 Identities = 306/645 (48%), Positives = 440/645 (69%), Gaps = 30/645 (4%)

Query  10   SKGIWRIAGLHHLLPM--PCRKLAPRRAIPDDVTAIAVWGrrpsaaaavararkaGLTVI  67
            S+GI++I+ L  LLP    C+          +  A+  WG RP++  A A A    L  I
Sbjct  28   SRGIRKIPHLSTLLPEFHICKD-------GKEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  68   RLEDGFIRSCGPAAHGYPTLSLVIDYDGIYYDASQPSTLENLI--QDTAGNAALREAAQE  125
             LEDGF+RS G +  GYP  S+V D  GIYYD+++PS LE+LI   DT  + +L +A Q+
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQA-QQ  139

Query  126  AMRLIVEGDLAKYNHAP------PFDGSPDARAVLVVDQTAGDMSVTFGNASAASFRLML  179
            AM +I++ +L+KYNHAP      P+ +++ + +VL++DQT GDM++ +G A A++F LM+
Sbjct  140  AMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMF  199

Query  180  ESALAENPDAEIWVKTHPDVVHGGKRGYLRDIRANTRLRLITEDASPQSLLRCVSRVYTV  239
            ++AL ENP+A+IWVKTHPDV+ G K+GYL ++  + R++L++ED +P SLL+ V +VY V
Sbjct  200  QTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCV  259

Query  240  TSHFGFEALMAGKPVVCFGQPWYAGWGLTDDrhpaaa--tlaarrgnaSLLTLFSAAYLR  297
            TS+ GFEAL+ GKP+  FG PWYAGWG++DDRHP       + RR+  +LL LF+AAYL+
Sbjct  260  TSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQ  319

Query  298  YARYLNPQTNQPGTLFDVLTWlalqrrhhlalrGTLWVPGLTLWKRSVVKPFLSTPYNRL  357
            Y+RYLNP+T ++G+LFDV+  LA  +R +  LRG L   G++LWKR+V KPF++ P  RL
Sbjct  320  YSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRL  379

Query  358  RFTR--------RAPQADACVVWGTAGEARWQSTTQARGMPVWRMEDAFLRSVGLGSDLF  409
            +F          + ++    + WG + EA  + + Q + +P+ RMED+F+RSVGLGS+L 
Sbjct  380  KFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHH-IPLLRMEDGFIRSVGLGSNLV  438

Query  410  APLSLVLDKRGLYYDATRASDLEIALNRVHLTPaeearaaalrrQIIESRVSKYNAGGAW  469
            +PLSLV D  ++Y++A  +S LE  L+  ++   +   A  L++ + E+++SKYN G++ 
Sbjct  439  PPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSS-  497

Query  470  RLPASAWGRRILLVPGQVSDDASLVDGTQGIRTIAALLRMVRARNPQAYIVFKPHPDVAC  529
             + A++ ++ ++LVPGQV DDAS+  G+  I     LLR VR RNP+AYI++KPHPDV  
Sbjct  498  DFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVS  557

Query  530  GNRQGEPSARDALRWADCLATQADIVDVLDQVDEVHTLTSLAGFEALLRGKTVFCYGMPF  589
            GNR G+ S+ DA R AD  A QADI+  L+  DE+HT+TSL+GFEALLRGK V CYG+PF
Sbjct  558  GNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPF  617

Query  590  YAGWGLTHDEYPCPRRTRRLTLNALIHTTLIDYPFYRHPTRKTPI  634
            YAGWGLT+D  P PRR+RRL L  LI  TLI+YP Y HP    +I
Sbjct  618  YAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAI  662

70) Hoch_5948 in NC_013440


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  432 bits (1625),  Expect = 6e-122, Method: Compositional matrix adjust.
 Identities = 305/688 (45%), Positives = 455/688 (67%), Gaps = 19/688 (2%)

Query  15   SPGMAEIPHLAALLGADEVRFRPSRYEASGFDAVVGWGNKPTAEPAIAYAREHDLPYWRV  74
            S G+  IPHL++LL      F+  + ++   +AVVGWG +PT++ A A+A EH+LP+  +
Sbjct  28   SRGIRKIPHLSTLLPE----FHICK-DGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIAL  82

Query  75   EDGFLRSVGLGRGGAAPLSVVLDDRGIYYDARTPSRLEAILAGDEPCSALLDDPAFLTRA  134
            EDGFLRS+GLG +G +P S+V DD GIYYD+  PSRLE ++ + +   ++  +   L++A
Sbjct  83   EDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAAD---TMPSET--LAQA  137

Query  135  DRALQRILAARLSKYNDAPPRSVGELLGERVR-KRVLVVDQTQGDLSITHGLADVERFGA  193
            ++A++ IL  +LSKYN+AP  S ++ L    +   VL++DQT GD++I  G AD   F  
Sbjct  138  QQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFEL  197

Query  194  MLDAAMCEHAEAEILVKVHPDVVAGHRRGCVPRVLNSARVRVLAEHVNPVELLREVDHVY  253
            M+++A+ E+++A+I VK HPDV+ G ++G + ++ +  RV++LAE++NP+ LL++VD VY
Sbjct  198  MFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVY  257

Query  254  VVTSQLGFEALLTRTPVTTFGAPFYAGWGLSDDRAA------PERRTRKRTLVQAFAAAY  307
             VTSQ+GFEALL   P+TTFG P YAGWG+SDDR +        +R   R L+Q FAAAY
Sbjct  258  CVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAY  317

Query  308  LLYPRYLDPETGERGSIEQVIDHLSRQRAMFEENRGTIFCFGFRPWKRGYVRDYLRSPGN  367
            L Y+RYL+P+TGE GS+ +VID L+  +   +  RG ++C G   WKR+  + ++  P+ 
Sbjct  318  LQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSC  377

Query  368  RVVFARSAAHAESQGCDEQTSALLVWGQRAREDVAALAERHALPVWRMEDGFLRSVGLGS  427
            R+ F  S+         +++  +L WG+ ++E +  +AE+H +P+ RMEDGF+RSVGLGS
Sbjct  378  RLKFISSTQKLARVKLSDDAR-ILAWGN-GKEAIVRFAEQHHIPLLRMEDGFIRSVGLGS  435

Query  428  DFVTPASLVVDKAGVYYDPRTPSALEKLLAEHAFSDaereraralreaIVSAGVSKYNVG  487
            ++V P SLV D  ++Y+++ TPS LE +L ++ F D + + A  L+  +    +SKYNVG
Sbjct  436  NLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVG  495

Query  488  QRQPLAVPEGARVVLVPGQVEDDASIALGCPGICSNEDLLRAARVAAPDAHIVYKPHPDV  547
              +  A + +  V+LVPGQVEDDASI  G P I  N DLLR+ R   P+A I+YKPHPDV
Sbjct  496  SSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDV  555

Query  548  LAGNRQGQVSDPVDRGLCDQLEDQASLADCLAAAHEVHTLTSLVGFEALLRGLPVTVHGQ  607
            ++GNR G++S        DQ  +QA +  CL  A+E+HT+TSL GFEALLRG  V+  G 
Sbjct  556  VSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGL  615

Query  608  PFYAGWGLTAdrepvprrrrrlrldelvAGALILYPRYLHPETHAFTTPEAILAALQRAR  667
            PFYAGWGLT D  P+PRR RRL L +L+AG+LI YP Y+HPETH    +E+    L R +
Sbjct  616  PFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQK  675

Query  668  AEHPESAPLKTPWPRRQLRKLGHIARGL  695
              + ++  L      ++L K+ ++ R++
Sbjct  676  NMQKNNNGLHRGCFAKKLGKIKQLYRSF  703

71) CtCNB1_2753 in NC_013446


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  413 bits (1555),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 278/618 (45%), Positives = 423/618 (69%), Gaps = 13/618 (2%)

Query  1    MPYVALEDGFLRSFGTG-EHFPPLSLVVDDAGIYYDCTRPSALEQllssdadvlapdaal  59
            +P++ALEDGFLRS+G G   +PP S+V DD GIYYD TRPS LEQL+ +   + +   A 
Sbjct  77   LPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQ  136

Query  60   vRQAREKLLSAGLSKYNHAPDLPAG-VLRA-DDVQRVLVVDQTAGDMSVAKGGadaatfg  117
             +QA + +L   LSKYNHAP+L+ +  LR+    + VL++DQT GDM++  GGADA+TF 
Sbjct  137  AQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFE  196

Query  118  amlaaaLDENPQATVYVKTHPEVTSGRKGGYLTRVQPDARTVVLRDAVNPMSLIAQMDKV  177
             M+ +AL+ENPQA + VKTHP+V  G+K GYLT++  + R  +L + +NP+SL+ ++DKV
Sbjct  197  LMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKV  256

Query  178  YVVSSTMGFEALLASKPVVCFGVPWYAGWGVTDDRQPQ-HaamgrragrsrsVDELFAAG  236
            Y V+S MGFEALL +KP+  FG+PWYAGWGV+DDR+P+ +  +  +   +R++ +LFAA+
Sbjct  257  YCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAA  316

Query  237  YMHYTRYLNPETRQLGSIADVTVWLDRQREMAERYSGRMICVGFPRWRAWNFRQMLSLHA  296
            Y++Y+RYLNP+T + GS+ DV   L   +   ++  G + CVG + W+    +  +++ +
Sbjct  317  YLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPS  376

Query  297  KRVVHarsadaaaaLKPERDDCLVCWGRVPPEGVQELAAASGVRLLRMEDGFVRSVGLGS  356
             R+    S++  A +K   D  ++ WG    E++  +A    + LLRMEDGF+RSVGLGS
Sbjct  377  CRLKFISSTQKLARVKLSDDARILAWGN-GKEAIVRFAEQHHIPLLRMEDGFIRSVGLGS  435

Query  357  DLIPPQSFVLDAQGIYFDPGQPSELEDLLNTRTFTAQDLERARNVRAFIVEHGITKYNLE  416
            +L+PP S+V D  +IYF++  PS LE +L+ + F  QD++ A +++  + E+ I+KYN+ 
Sbjct  436  NLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVG  495

Query  417  PNCPVDWFSDEHPQAGRQVVLVPGQVEDDASIRFGCDAKGVCTNLGLLQAARSAFPDAFI  476
            ++     F+   P +++ V+LVPGQVEDDASIR+G     +  NL+LL++ R   P+A+I
Sbjct  496  SSD----FTA--PSTDKTVILVPGQVEDDASIRYGSPQ--IYRNLDLLRTVRERNPNAYI  547

Query  477  VFKPHPDVSSGNRKGRVEPAQALLYADHMEQGASVVSCIEACDVVVTMTSLTGFDALLRN  536
            ++KPHPDV SGNR G++ P +A  YAD+  + A +++C++  D + TMTSLTGF+ALLR 
Sbjct  548  IYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRG  607

Query  537  KQVVVHGRPFYAGWGLTQDCLPVPRRSRSLSLDELVAGALLHYPLYWDPVLRGYTSCEAV  596
            K+V   G PFYAGWGLTQD LP+PRRSR L L +L+AG+L+HYP Y +P  +   + E+ 
Sbjct  608  KKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETA  667

Query  597  LRRLLEQRTALEQSGSLQ  614
             + L+ Q+    ++ +L+
Sbjct  668  AQILIRQKNMQKNNNGLH  685


 Score =  102 bits (371),  Expect = 7e-23, Method: Compositional matrix adjust.
 Identities = 93/281 (34%), Positives = 163/281 (59%), Gaps = 18/281 (6%)

Query  316  DDCLVCWG-RVPPEGVQELAAASGVRLLRMEDGFVRSVGLGSDLIPPQSFVLDAQGIYFD  374
             + +V WG R   +  + +AA   + ++ +EDGF+RS+GLG    PP S+V D  GIY+D
Sbjct  53   AEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYD  112

Query  375  PGQPSELEDL-LNTRTFTAQDLERARNVRAFIVEHGITKYNLEPNCPVDWFSDEHP---Q  430
              +PS LE+L L + T  ++ L +A++   FI++H ++KYN  P+     +SD+HP    
Sbjct  113  TTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPE-----LSDDHPLRSP  167

Query  431  AGRQVVLVPGQVEDDASIRFGCDAKGVCTNLGLLQAARSAFPDAFIVFKPHPDVSSGNRK  490
            +  + VL+ +Q  +D +I++G +A +   +L ++Q+A +  P+A I  K HPDV  G+++
Sbjct  168  SKPETVLIIDQTFGDMAIQYG-GADASTFEL-MFQTALNENPQADIWVKTHPDVLCGKKQ  225

Query  491  GRVEPAQALLYADHMEQGASVVSCIEACDVVVTMTSLTGFDALLRNKQVVVHGRPFYAGW  550
            G +         + + ++ + +S ++  D V  +TS  GF+ALL  K +   G P YAGW
Sbjct  226  GYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGW  285

Query  551  GLTQD------CLPVPRRSRSLSLDELVAGALLHYPLYWDP  585
            G+++D       L   +R  + +L +L A+A L+Y+ Y +P
Sbjct  286  GVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLNP  326

72) Alvin_0211 in NC_013851


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  408 bits (1535),  Expect = 7e-115, Method: Compositional matrix adjust.
 Identities = 289/684 (43%), Positives = 444/684 (65%), Gaps = 42/684 (6%)

Query  6    SRGILRIPGLEVVLGEPVVAVSPWRARPELSAIAGWGLKATSRRARDYARRHGLPYLALE  65
            SRGI +IP L  +L E  +     +   E  A+ GWGL++T+++AR +A  H LP++ALE
Sbjct  28   SRGIRKIPHLSTLLPEFHIC----KDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALE  83

Query  66   DGFLRSVGLGNQD-PPLSLIVDDLGVYYDATRPSRLETLI-------RHPLSDTETARAR  117
            DGFLRS+GLG  + PP S++ DD+G+YYD+TRPSRLE LI        + L++++ A   
Sbjct  84   DGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDF  143

Query  118  SLRSAWCAARVSKYNHLRE--EREPLPSP----AVLVVDQTFGDPAITHGLADSKSFQHL  171
             L+      ++SKYNH  E  + +PL SP    +VL++DQTFGD AI  G AD+ +F+ +
Sbjct  144  ILQH-----HLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELM  198

Query  172  LEAALDENPRAVILVKIHPDVFAGRKRGHFDPErlarlervrlltrDLHPVSLLERVETV  231
            +++AL+ENP+A I VK HPDV+ G+K+G +    LA+ +RV+LL+ D++P+SLL+ V+ V
Sbjct  199  FQTALNENPQADIWVKTHPDVLCGKKQGYLTQ--LAQQHRVHLLAEDINPISLLQNVDKV  256

Query  232  YTVTSQLGFEALLWGRRARVFGMPFYAGWGLTED---ELPRL---ERRAPVGLESLIHGA  285
            Y VTSQ+GFEALL G+    FG+P YAGWG+++D   E+ RL   +RRA   L  L+ +A
Sbjct  257  YCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAA  316

Query  286  LIAAPRYLDPETGERCEIERVLEWMGLQRRMRERFPETIRALNFSAWKRPLVRRFMQ--G  343
             +  +RYL+P+TGE   +  V++ ++  +R  +++   +  +  S WKR++ + F +  +
Sbjct  317  YLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPS  376

Query  344  SRVEFETRPHDARQIKGDARIPLAVWGLAAAPEGR-------TILRLEDGFLRSVGLGAD  396
             R+ F +  +   ++K      +  WG +  +  R        +LR+EDGF+RSVGLG++
Sbjct  377  CRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSN  436

Query  397  LVEPLSWVIDQRGLYYDPSRPSDLEILLETQVFDeallerarrlrerIVASGLTKYNVGA  456
            LV PLS V D+ ++Y+++  PS LE +L+ Q FD+  ++ A +L+  +  + ++KYNVG+
Sbjct  437  LVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGS  496

Query  457  AHWQRPATARRVILVPGQVETDASIRLGAPGIRHNLELLRAVREAHPDAYVLYKPHPDVT  516
            ++   P+T + VILVPGQVE DASIR G+P I +NL+LLR+VRE +P+AY++YKPHPDV 
Sbjct  497  SDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVV  556

Query  517  AGLRAAGEHESAARTWCDELIVDVPMATLLDAVDELHVLTSLAGFEALLRGKRVVCHGQP  576
            +G R +      A    D+   +  + T L+  DE+H +TSL+GFEALLRGK+V C G P
Sbjct  557  SGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLP  616

Query  577  FYAGWGLTEDRLPPARRTRRLSLEMLVAGALLLYPTYVSRVTSRFTTAEHALDELL-EWR  635
            FYAGWGLT+D LP +RR+RRL L  L+AG+L+ YP Y+   T +   AE A + L+ +  
Sbjct  617  FYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKN  676

Query  636  ARGERLTFWRRVFVRPVLGRLAAL  659
             + +   + R  F +  LG++  L
Sbjct  677  MQKNNNGLHRGCFAKK-LGKIKQL  699

73) Dvul_2595 in NC_008751


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  405 bits (1525),  Expect = 4e-114, Method: Compositional matrix adjust.
 Identities = 281/655 (43%), Positives = 440/655 (68%), Gaps = 19/655 (2%)

Query  22   RIPHLNLFLHDMENCTIQRNT--VLGWGHKPTADKARRYAAEHNLPYIAVEDGFLRSLDL  79
            +IPHL+ +L + + C   +++  V+GWG +PT++KAR +AAEH+LP+IA+EDGFLRSL+L
Sbjct  33   KIPHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGL  92

Query  80   GCRGAQPLSLVVDHTGIYYDASGPSDLEDFLNSSGWETPELMDSARLAMREIIRHSLSKY  139
            G  G  P S+V D+ GIYYD++ PS LE+++ +++   +E +  A+ AM  I++H LSKY
Sbjct  93   GVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKY  152

Query  140  NHAPESSE--SVWGDGLAPRVLVLDQTVGDASVTLGMADEECFHAMLEKALTVHPHSHVC  197
            NHAPE S+  ++++ + +  VL++DQT GD ++  G AD   F+ M++ AL  +P++++ 
Sbjct  153  NHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIW  212

Query  198  VKTHPDVIAGKKKGYLTEYATKHGVKILAVEHAPLSLLSRADVVYTVTSQMGFEALMLDK  257
            VKTHPDV+ GKK+GYLT+ A +H V +LA +  P+SLL   D VY VTSQMGFEAL+ +K
Sbjct  213  VKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGK  272

Query  258  EVHCFGMPFYAGWGLTNDMKTC------SRRKRQRSLEEVFTAAYLLYARYVNPIRSERC  311
             +  FG+P YAGWG+++D          ++R+  R+L ++F+AAYL Y+RY+NP  +E  
Sbjct  273  PLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAG  332

Query  312  DIHDTISLLTEQRRQNESNRCFHACVGFRWWKRPYARAYLQSTGGQTVFYRNAKQAIYDA  371
             + D I  L+  +R+N+  R    CVG   WKR+ A+++++  + +  F  ++++     
Sbjct  333  SLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVK  392

Query  372  WTKGGELVTWSSNVDTELQKACDERGIRLARMEDGFIRSVGLGSNFNWPYSLVVDRKGIY  431
             + ++ +++W++  ++ + +  +++ I L RMEDGFIRSVGLGSN+  P SLV D  +IY
Sbjct  393  LSDDARILAWGNGKEA-IVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIY  451

Query  432  YDPSLPSELEDILNAIH-EHPEHAALLKRAATLCAIILEKGLTKYNTGFRVEFLPKLPKE  490
            +++  PS LE IL+  + ++ +  + LK    L  ++ E+ ++KYN G   +F +  + +
Sbjct  452  FNAETPSRLEYILQNQNFDDQDFQTALK----LQKMLTENHISKYNVG-SSDFTAP-STD  505

Query  491  KTIILVPGQVEDDASVRCGGFGM-TNLDLLRAAREARPDAFIIYKPHPDVESGNRQGALP  549
            KT+ILVPGQVEDDAS+R G+  +  NLDLLR+ RE  P+A+IIYKPHPDV SGNR G ++
Sbjct  506  KTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHIS  565

Query  550  DTTTLHYADSILHDFPMGSLLPLVNEVHTLTSQTGFEALLRGVKVCTYGGPFYAGWGLTE  609
               + +YAD   ++  + + L   +E+HT+TS TGFEALLRG KV  YG PFYAGWGLT+
Sbjct  566  PEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQ  625

Query  610  DNRTFPRRKARLNLNELVAGALLLYPSYYDWQTRNFCRAEDVCCRLLQPDGQMRG  664
            D   +PRR  RL+L +L+AG+L+ YP Y + +T++   AE     L++     + 
Sbjct  626  DLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKN  680


 Score =  133 bits (488),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 90/295 (31%), Positives = 173/295 (59%), Gaps = 6/295 (2%)

Query  43   VLGWGHKPTADKARRYAAEHNLPYIAVEDGFLRSLDLGCRGAQPLSLVVDHTGIYYDASG  102
            +L+WG+    +   R+A +H++P + +EDGF+RS++LG     PLSLV D+ +IY++A  
Sbjct  399  ILAWGN--GKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAET  456

Query  103  PSDLEDFLNSSGWETPELMDSARLAMREIIRHSLSKYNHAPESSESVWGDGLAPRVLVLD  162
            PS LE +L++   +  ++  + +L  + +  + +SKYN ++    +   D     +LV +
Sbjct  457  PSRLEYILQNQNFDDQDFQTALKLQ-KMLTENHISKYNVGSSDFTAPSTDKTV--ILVPG  513

Query  163  QTVGDASVTLGMADEECFHAMLEKALTVHPHSHVCVKTHPDVIAGKKKGYLTEYATKHGV  222
            Q  +DAS+  G ++      +L      +P++ +  K HPDV++G++ G ++   + +  
Sbjct  514  QVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYA  573

Query  223  KILAVEHAPLSLLSRADVVYTVTSQMGFEALMLDKEVHCFGMPFYAGWGLTNDMKTCSRR  282
               A +   L+ L  AD + T+TS  GFEAL+ +K V C+G+PFYAGWGLT+D+   +RR
Sbjct  574  DQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRR  633

Query  283  KRQRSLEEVFTAAYLLYARYVNPIRSERCDIHDTISLLTEQRRQNESNRCFH-AC  336
             R+  L ++++++ + Y+ Y++P   +  + + +  +L  Q+  + +N  +H +C
Sbjct  634  SRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNNNGLHRGC  688

74) VEA_001778 in NC_013456


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  404 bits (1520),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 279/661 (43%), Positives = 418/661 (64%), Gaps = 48/661 (7%)

Query  7    VLSRGIIRISNLTSFLGSKLVLPIFRWLYSC------NVVVGWGFKATAKRARDYAEKHD  60
            + SRGI +I++L++      +LP F+    C      + VVGWG+++T+ +AR +A  H+
Sbjct  26   IPSRGIRKIPHLST------LLPEFH---ICKDGKEAEAVVGWGLRPTTHKARAFAAEHQ  76

Query  61   LTYVALEDGFLRSIGLGVAGAQPLSLVVDDVGIYYDARQPSKLEILIKESEGLGSDELVR  120
            L ++ALEDGFLRS+GLGVAG  P S+V DD+GIYYD+ +PS+LE LI  ++ + S+ L +
Sbjct  77   LPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQ  136

Query  121  SRLCIDAIRQYRLSKYNQSQ--RDESLLEEKPK---VLVIDQTMGDASVEGAQASQDTFV  175
            ++  +D I Q +LSKYN++    D+  L   +K   VL+IDQT GD +++ + A   TF 
Sbjct  137  AQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFE  196

Query  176  EMLKHAVEANPDETIWVKVHPDVVHGKKRGFLYPLPFEHPNIRLHTEKVNPWDFLDSVES  235
             M++ A++ NP+  IWVK HPDV+ GKK+G+L  L+ ++  ++L +E +NP  +L++V+ 
Sbjct  197  LMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLA-QQHRVHLLAEDINPISLLQNVDK  255

Query  236  VYTVSSLMGFEALLAGASVHCFGMPFYAGWGLTHDIQQ------CPRRNIDRSLEQLFYA  289
            VY V+S MGFEALL G ++  FG+P YAGWG+++D +         +R   R+L QLF A
Sbjct  256  VYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAA  315

Query  290  AYIQYARYVDPILGERCEIERIISYIADTLKVMAKPSRTVSISNLSWWKQRWIGDYLKA-  348
            AY+QY+RY++P  GE   +  +I Y+A   +   K    +    +S WK+     +++  
Sbjct  316  AYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVP  375

Query  349  ---WRF----EKVS----SEAEEMLRWGRGSLDENSYC---------IEDGFIRSVGLGV  388
                +F    +K++    S+   +L WG G      +          +EDGFIRSVGLG 
Sbjct  376  SCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGS  435

Query  389  HFNRPVSLVCDSRGIYFDVREPSDLEYMLENQDCTAWDCARSRALIAQLLTANLTKYNVG  448
            ++  P+SLV D  +IYF+   PS LEY+L+NQ+    D   +  L   L   +++KYNVG
Sbjct  436  NLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVG  495

Query  449  SECALSLPKGRKIILVPGQVESDASIKYGSPETYHNEALLKAVRTAEPDAYIIYKPHPDV  508
            S    + + ++ +ILVPGQVE DASI+YGSP+ Y+N  LL++VR  +P+AYIIYKPHPDV
Sbjct  496  SSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDV  555

Query  509  LVGQRDNGNWQGDFIHVADHVEPQASMASLLEIVDEVHTMTSLTGFEALLRGKSVTCYGL  568
            + G+R       D  + AD+   QA + + L+  DE+HTMTSLTGFEALLRGK V+CYGL
Sbjct  556  VSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGL  615

Query  569  PFYAGWGLTNDKLNCARRTRSHSVESLAYFALIEYPTYVDPVTRQTMTAEQAVTRVAQMK  628
            PFYAGWGLT+D L  +RR+R   +  L   +LI+YP Y++P T+Q++ AE A   + + K
Sbjct  616  PFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQK  675

Query  629  A  629
             
Sbjct  676  N  676

75) Hneap_1504 in NC_013422


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  400 bits (1503),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 264/636 (42%), Positives = 418/636 (66%), Gaps = 37/636 (5%)

Query  2    ALAQKHQRPFYLLEDGLLRSFNTAVAGEPSLSWVWDDRGIFYDARTLSRLESLI-GSSNL  60
            A+A  HQ PF  LEDG+LRS+  +VAG P+ S V DD GI+YD+   SRLE LI ++  +
Sbjct  70   AFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTM  129

Query  61   TTAQRETAERVLASIQANGLSKYNHGLPVPAGYFPNISTRR--VLLVDQTRGDASIVFGN  118
             +     A++ +  I  + LSKYNH+  ++ +     +++   VL++DQT GD +I +G 
Sbjct  130  PSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGG  189

Query  119  ASAQSFEAMLACALNEEPDAEHWVKIHPDVLANKRQGCI-NLANHPHIRIITDDFHPHDL  177
            A A +FE M+  ALNE+P+A+ WVK HPDVL  K+QG + +LA++ +++++++D++P  L
Sbjct  190  ADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISL  249

Query  178  ISHFDRVFVVTSQMGFDALLLHKPVTCFGQPFYAGWGLTDDKNA-------PQRRGEQRD  230
            + + D+V+ VTSQMGF+ALL  KP+T FG P YAGWG++DD+++        QRR+  R+
Sbjct  250  LQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRAT-RN  308

Query  231  VLDLVHAVYLEYACYVHPIHATASDFFTVAQYITRQKQATRFWIDPLGMNIHKETNEQSM  290
            +L+L  A YL+Y+ Y++P  + A+ +F V +Y++  K+                 +++ +
Sbjct  309  LLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKR-----------------KNDKL  351

Query  291  TNTIKKPRILCFGFRFWKRAQVRPFFGDQV-RLVFCDSLDDAIAKGIEATDQFAVWSSKA  349
                 +  + C G  +WKRA  +PFF     RL F  S +      +    ++  W+ ++
Sbjct  352  -----RGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWG-NG  405

Query  350  DSALLDYAREQDIPLVQVEDGFLRSVGLGSDFVAPLSLVFDRTGIYSNPNHPSDLENMLQ  409
              A++ +A +++IPL+++EDGF+RSVGLGS++V+PLSLV D  +IY N++ PS LE +LQ
Sbjct  406  KEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQ  465

Query  410  QHEFSEEECDEAARLVERIVANRITKYNVDNDTPIIIKPAGRSVILIPGQVADDASIRMG  469
            +++F +++ + A +L   +  N+I+KYNV++ + +   +++++VIL+PGQV DDASIR G
Sbjct  466  NQNFDDQDFQTALKLQKMLTENHISKYNVGS-SDFTAPSTDKTVILVPGQVEDDASIRYG  524

Query  470  AVHVRTNEELILNVRQTNPDAFIIYKPHPDVASGNRQGIVSESVLRKHCDLVAVDQSVLS  529
            + ++  N +L+  VR+ NP+A+IIYKPHPDV SGNR G +S     +  D  A +  +L+
Sbjct  525  SPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILT  584

Query  530  CLDVADEVHTITSLTGFDALIRGIKVVTYGMPFYAGWGLTHDHNSCPRRTRSLTLNQLVA  589
            CL+ ADE+HT+TSLTGF+AL+RG KV  YG+PFYAGWGLT+D  + PRR+R L L QL+A
Sbjct  585  CLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIA  644

Query  590  GTLLRYPRYCLPQHKGFVHADDVLSELIHQKAKLKT  625
            GTL++YP Y  P+    ++A+     LI+QK   K 
Sbjct  645  GTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKN  680


 Score =  112 bits (407),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 89/279 (32%), Positives = 165/279 (60%), Gaps = 13/279 (4%)

Query  332  IAKGIEATDQFAVWSSKADSALL-DYAREQDIPLVQVEDGFLRSVGLGSDFVAPLSLVFD  390
            I K+   ++    W+ ++ +     +A E+++P++ +EDGFLRS+GLG    +P S+V+D
Sbjct  46   ICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYD  105

Query  391  RTGIYSNPNHPSDLENM-LQQHEFSEEECDEAARLVERIVANRITKYNVD---NDTPIII  446
              GIY +  +PS LE++ L  +  + E   +A + ++ I+ ++++KYN     +D   + 
Sbjct  106  DIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLR  165

Query  447  KPAGRSVILIPGQVADDASIRMGAVHVRTNEELILNVRQTNPDAFIIYKPHPDVASGNRQ  506
             P+    +LI +Q  +D +I+ G+ +  T E ++    + NP+A I  K HPDV  G++Q
Sbjct  166  SPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQ  225

Query  507  GIVSESVLRKHCDLVAVDQSVLSCLDVADEVHTITSLTGFDALIRGIKVVTYGMPFYAGW  566
            G +++   + + +L+A D + +S L+  D V  +TS  GF+AL+ G  + T+G+P YAGW
Sbjct  226  GYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGW  285

Query  567  GLTHDHNS-------CPRRTRSLTLNQLVAGTLLRYPRY  598
            G+++D+++         RR+    L QL A++ L+Y+RY
Sbjct  286  GVSDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRY  323

76) Meso_2755 in NC_008254


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  390 bits (1468),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 276/664 (42%), Positives = 421/664 (64%), Gaps = 55/664 (8%)

Query  4    KRHSGGHVLASRGIAKIPHLQVFLDGW--------GSAVVGWGRKPSGHRAIALASKRKL  55
            KR      ++SRGI KIPHL  +L           + AVVGWG +P+ H+A A+A+ ++L
Sbjct  18   KRIVKNAYIPSRGIRKIPHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQL  77

Query  56   PFLLLEDGFLRSVERSG---PPLSLIVDDIGIYYDASAPSRLETLV-------REPLSEE  105
            PF+ LEDGFLRS+  +    PP S++ DDIGIYYD++ PSRLE L+        E L++ 
Sbjct  78   PFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQA  137

Query  106  QVRRTLLLMRAWRDGHISKYNHARDYDGPLPSR------FVLVVDQTFGDASVRHGLADA  159
            Q    ++L +     H+SKYNHA +  +  P R       VL++DQTFGD +++ G ADA
Sbjct  138  QQAMDFILQH-----HLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADA  192

Query  160  SSFQGMLQAALDENPECSVLVKSHPDVVRRRKRGYFEPRKLADHPRVKFILDDCRPARLL  219
            S+F+ M+Q+AL+ENP+  + VK+HPDV+  +K+GY+   +LA++ RV ++ +D  P  LL
Sbjct  193  STFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLT--QLAQQHRVHLLAEDINPISLL  250

Query  220  EQAEAVYTVTSQLGFEALIWGKRVRCFGMPFYAGWGLTDDA------LAAPARRKSATLE  273
            ++ + VY VTSQ+GFEAL+ GK +  FG+P YAGWG++DD       L    RR +  L 
Sbjct  251  QNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLL  310

Query  274  QLVHASLVRYPRYRDLHGETPADVEAVIEHVTLQTRMRARFSPELHALGFSWWKAPILKR  333
            QL  A+ ++Y+RY + +   ++ +  VI+ ++   R   ++  EL  +G S WK ++ K 
Sbjct  311  QLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKP  370

Query  334  FL--AGSKLNFVG---RMSAV--PPNATVALWGARHIG----ETPPGTKIIRIEDGFLRS  382
            F+  ++ +L+F++   +++ V  + +A +  WG    +           ++R+EDGF+RS
Sbjct  371  FFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRS  430

Query  383  VGLGSELSRPVSWICDEEGIYYDASRPSRLERILSDTDFDQLLLDRAGKLRQAILRARLT  442
            VGLGS+L  P+S + D+ +IY++A  PSRLE IL + +FD+  ++ A KL++ +   +++
Sbjct  431  VGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHIS  490

Query  443  KYNLGaprwvrparavrvILVPGQVESDASLRFGAPGIKTNLELLKAVRQANPDAYVVYK  502
            KYN+G++    P+    VILVPGQVE DAS+R+G+P I  NL+LL++VR+ NP+AY++YK
Sbjct  491  KYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYK  550

Query  503  PHPDVAAGVR----HQPGNTRWSDLCDEVVVTADMAQLLEEVDEVHTLTSLTGFEALLRE  558
            PHPDV +G R       + +R +   D+    AD+   L+  DE+HT+TSLTGFEALLR 
Sbjct  551  PHPDVVSGNRIGHISPEDAARYA---DQTAEQADILTCLQYADEIHTMTSLTGFEALLRG  607

Query  559  LPVTCYGQPFYAGWGLSCDMIPIERRKRRLSLDELVAGSLILYPTYHSRSSAGFITPEQA  618
              V+CYG PFYAGWGL+ D++PI RR RRL L +L+AG+LI YP Y    +   I +E A
Sbjct  608  KKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETA  667

Query  619  VAEL  622
               L
Sbjct  668  AQIL  671


 Score =  143 bits (527),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 101/296 (35%), Positives = 182/296 (62%), Gaps = 19/296 (6%)

Query  34   VVGWGRKPSGHRAIALASKRKLPFLLLEDGFLRSVERSG---PPLSLIVDDIGIYYDASA  90
            +++WG    +   + +A ++ +P+L +EDGF+RSV  ++   PPLSL+ DD++IY++A +
Sbjct  399  ILAWGNGKEA--IVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAET  456

Query  91   PSRLE-TLVREPLSEEQVRRTLLLMRAWRDGHISKYN-HARDYDGPLPSR-FVLVVDQTF  147
            PSRLE  L  + + +++ + +L L +   + HISKYN  + D+ +P   +  +LV +Q  
Sbjct  457  PSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVE  516

Query  148  GDASVRHGLADASSFQGMLQAALDENPECSVLVKSHPDVVRRRKRGYFEPR---KLADHP  204
            +DAS+R G ++     ++L++  + NP+  ++ K+HPDVV   + G + P    + AD+ 
Sbjct  517  DDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQT  576

Query  205  RVKFILDDCRPARLLEQAEAVYTVTSQLGFEALIWGKRVRCFGMPFYAGWGLTDDALAAP  264
              +  +  C     L+ A+ + T+TS  GFEAL++GK+V C+G+PFYAGWGLT+D L+ P
Sbjct  577  AEQADILTC-----LQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIP  631

Query  265  ARRKSATLEQLVHASLVRYPRYRDLHGETPADVEA-VIEHVTLQTRMRARFSPELH  319
             R +   L QL+ ++L++YP Y  +H ET   ++A    ++ ++ +   + +  LH
Sbjct  632  RRSRRLELWQLIAGTLIHYPDY--IHPETHQAINAETAAQILIRQKNMQKNNNGLH  685

77) BN865_07210 in NC_022132


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  387 bits (1454),  Expect = 2e-108, Method: Compositional matrix adjust.
 Identities = 273/661 (42%), Positives = 425/661 (65%), Gaps = 24/661 (3%)

Query  23   YKTYKNINKEDVFVGWGRKNSGLKAMALAKKYNAKFMLFEDGFLRSLNLGVENSPSFSIV  82
            +   K+ +  +  VGWG + +  KA A+A   +  F+ +EDGFLRSL LGV   P++SIV
Sbjct  44   FHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIV  103

Query  83   KDDVGIYYDASTFSRLEN-ILNTYEFSSKELEQTKKAIELIKREKLSKYNN--NFCIPQE  139
             DD+GIYYD++  SRLE+ IL +   +S  L Q+++A+++I ++ LSKYN+  ++   + 
Sbjct  104  YDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHP  163

Query  140  L-FGVNEERVLIITQVENDTSLRFGLASDFSTQDIINDALEENPKAKIYIKIHPDVLSGK  198
            L    + E VLII Q   D ++++G A   + + +++ AL+ENP+A I +K HPDVL GK
Sbjct  164  LRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGK  223

Query  199  KQSDFSMQDLPNRCVILKENYNPIELLSHFKKVYTKTSGMGFEALMQGCECACYGMPFYA  258
            KQ+ ++     +R  +L E+ NPI LL +  KVY  TS MGFEAL+ G   + +G+P YA
Sbjct  224  KQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYA  283

Query  259  GWGLTQDR-------LDCKRRVKKRSLEEVFYAAYILYSEYFNPYLNQKSDIFDTIFTLA  311
            GWG+++DR       ++ +RR   R+L ++F AAY+ YS Y+NP   + + +FD I  LA
Sbjct  284  GWGVSDDRHPEINRLVQTQRRAT-RNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLA  342

Query  312  RYKRIEQVNSHTLYFLGFTLWKRWFMKPFFKAKNNKIIFLNSLKELYNIKLNSKDKIFIW  371
              KR ++     LY +G +LWKR   KPFF+  + ++ F++S + L  +KL+   +I+ W
Sbjct  343  TVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAW  402

Query  372  GKKYDKAL-LAKDFNNEIFLVEDGFLRSVFLGSDLTRPFSLIVDSKGLYVDPNHPSDLEE  430
            G+  +  + +A + +  ++ +EDGF+RSV LGS+L  P+SL+ D  ++Y +++ PS LE 
Sbjct  403  GNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEY  462

Query  431  LLQNHEFDDSLRQRAKKLITTITQNKFSKYNGLKHEKLNFNTNKKIILIPAQVEDDASMI  490
            +LQN++FDD   Q A KL   +T+N +SKYN    +    +T+K +IL+P+QVEDDAS+ 
Sbjct  463  ILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIR  522

Query  491  LGGAG-FDTLKLLQSVRAANKDAFIVFKSHPDVLSGNRKGLKDKGIILKYCDEIIENVSI  549
             G++  +  L LL++VR  N +A+I++K+HPDV+SGNR G        +Y D+  E+  I
Sbjct  523  YGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADI  582

Query  550  DSAINACDEVHTITSTSGFDALLRGKKVVVYGKPFYAGWGLTQDLHRISRRTRMLNLEEL  609
             + ++  DE+HT+TS +GF+ALLRGKKV  YG PFYAGWGLTQDL  I+RR+R L+L +L
Sbjct  583  LTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQL  642

Query  610  VAGVLILYPRYIHPKSKNLCEVELALDIML----------ALQRDYFSKRWLKILIDFRI  659
            +AG LI YP YIHP + +  + E A +I++          +L+R+ F+K+  KI   +R 
Sbjct  643  IAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRS  702

Query  660  F  660
            F
Sbjct  703  F  703

78) Tgr7_1314 in NC_011901


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  383 bits (1440),  Expect = 2e-107, Method: Compositional matrix adjust.
 Identities = 269/642 (42%), Positives = 438/642 (69%), Gaps = 15/642 (2%)

Query  3    AGRGADTRWLGWGAKPSARWAQIYARLSGGRPLLLEDGFLRSYGLGVHGVPALSIVVDDL  62
             G+ A++  +GWG +P+++ A+ +A       + LEDGFLRS GLGV G P+ SIV DD+
Sbjct  49   DGKEAEAV-VGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDI  107

Query  63   GIYFDARKPSRIEQL-LQDGVFSPEIlqqaeaalallqrerlTKYNVGTEVPDDH---FA  118
            GIY+D+ +PSR+EQL L  +  ++E L QA+ A+ ++ +++L+KYN + E++DDH    +
Sbjct  108  GIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSP  167

Query  119  PDVRRVLVVDQTLGDASITGGLADEASFLRMLDAAVAENPGAEVWVKTHPDVLAGKRASC  178
            +    VL++DQT+GD +I  G AD ++F  M+++A+ ENP A++WVKTHPDVL GK+ + 
Sbjct  168  SKPETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGY  227

Query  179  LSAARGRSDVRWITQDWHPHSLLAHFERVYVVTSQMGLDALIVGRPVTCFGVPFYSGWGL  238
            L+    +  V+ +++D +P SLL + ++VY VTSQMG++AL+ G+P+T FG+P Y+GWG+
Sbjct  228  LTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGV  287

Query  239  TDDR-------VPCERRAARRSLVEliaaayllyarylDPETGKPGNFFQVADFIvrqrr  291
            +DDR       V  +RRA+R +L++L+AAAYL Y+RYL+P+TG +G++F+V D++   +R
Sbjct  288  SDDRHPEINRLVQTQRRATR-NLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKR  346

Query  292  vqarwprrFVAVGFRAWKAAHLTPILGMAREGVRFVRDAEAARALGLRKDDGLIHWGRDA  351
             + +    +  VG   WK A   P++ ++   ++F+  ++    + L  D  ++ WG ++
Sbjct  347  KNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWG-NG  405

Query  352  PQRVEELARATSTRLFHLEDGFYRSVGLGSDLIRPRSVVIDEQGLYFDPRGPSDLEQLLN  411
             + +  +A      L+++EDGF RSVGLGS+L+ P S+V D+ ++YF++  PS LE +L+
Sbjct  406  KEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQ  465

Query  412  TAAFSPDELEQARWVRSLIVEHGLTKYNLEPLVPVDWPAAGRTVVLVPGQVEDDASIRHG  471
               F  ++++ A  ++ ++ E+ ++KYN+ +      P++++TV+LVPGQVEDDASIR G
Sbjct  466  NQNFDDQDFQTALKLQKMLTENHISKYNVGS-SDFTAPSTDKTVILVPGQVEDDASIRYG  524

Query  472  CESVRTNLDLMQVARETCPDAFIVFKPHPDVASGNRHGAVQDDEALRHVDWVERKASMVS  531
               +  NLDL++  RE  P+A+I++KPHPDV SGNR G +  ++A R  D    +A +++
Sbjct  525  SPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILT  584

Query  532  CLDGADAVHTMTSMAGFEALLRGKRVVVYGRPFYAGWGLTEDRLSIPRRTRKLTLDELVA  591
            CL+ AD +HTMTS++GFEALLRGK+V  YG PFYAGWGLT+D L+IPRR+R+L L +L+A
Sbjct  585  CLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIA  644

Query  592  VALLRYPLYWDWELKGFTSCEAVLRRLIEERDALTATGGLER  633
             +L++YP Y + E     + E+  + LI +++      GL+R
Sbjct  645  GTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNNNGLHR  686

79) GU3_14830 in NC_016745


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  379 bits (1426),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 268/619 (44%), Positives = 402/619 (65%), Gaps = 27/619 (4%)

Query  3    GNNATAVVGWGMKPNTERARRLAARKDLPFWQLEDGFVGYIGHPATRATRLSLIVDEVGV  62
            G++A AVVGWG++P T++AR +AA  +LPF  LEDGF+  +G   +     S++ D++G+
Sbjct  50   GKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGI  109

Query  63   YYDATRPSRLEQLLQNIDWWNDDWQQRADALRRILVDQGITKYNCYSGNVLPAAIAARLD  122
            YYD+TRPSRLEQL+   D    +   +A+    +++++ ++KYN   +  L+   + R  
Sbjct  110  YYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYN--HAPELSDDHPLRSP  167

Query  123  NTRPRVLVIDQTKGDQSVRLGLASEASFTNMLAAAKAENPDAQIIVRTHPDVLLGKKQGY  182
            +    VL+IDQT GD +++ G A  ++F  M+ +A  ENP+A+I V+THPDVL GKKQGY
Sbjct  168  SKPETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGY  227

Query  183  LTDVAGSD-VLLLADSVNPFALMAEMDKVYTVTSQLGFEALLAGKPVVCFGAPFYAGWGV  241
            LT++A  + V LLA+ +NP++L+ ++DKVY VTSQ+GFEALL GKP+  FG P YAGWGV
Sbjct  228  LTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGV  287

Query  242  TDDR------LAVLRRGEQRTVPQLLAAAYLRYCRYLDPVTGERCELEDLLD-LILAQRS  294
            +DDR      L   +R   R + QL+AAAYL+Y RYL+P TGE   L D++D L   +R 
Sbjct  288  SDDRHPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRK  347

Query  295  PVPPVDTLYAVGFSLWrrrfaprflrrYAKKVIFVDRMPDAMDSRLRGNDTSPSRAVLVW  354
                 + LY VG SLW+R  A  F+   + ++ F+         +L ++       +L W
Sbjct  348  NDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDAR-----ILAW  402

Query  355  GR------KFESQLAGCSLPVWRMEDGFLRSVGLGSDLRRPGSLVIDPLGMYYDPRTPSA  408
            G       +F  Q     +P+ RMEDGF+RSVGLGS+L  P SLV D +++Y+++ TPS 
Sbjct  403  GNGKEAIVRFAEQH---HIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSR  459

Query  409  IEHYLKHHDFSALELELGEQLLTHFREQALTKYNVGVRRQLDWRAQASHRPVILVPGQVD  468
            +E  L++++F   +++ + +L   + E+ ++KYNVG     D  A ++++ VILVPGQV+
Sbjct  460  LEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSS---DFTAPSTDKTVILVPGQVE  516

Query  469  DDASVQLGSPFVAGNAALLQAVRAAHPNAFIVFKPHPDVVSGNRKGQVPEKVLKACVDLV  528
            DDAS++ GSP +  N  LL++VR  +PNA+I++KPHPDVVSGNR G+++        D  
Sbjct  517  DDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQT  576

Query  529  ETEAGIVDCLDECDAVHTLTSLTGLEALIRGKPVTVWGQPFYAGWGLTTNVHPVTRRART  588
              +A+I+ CL+  D +HT+TSLTG+EAL+RGK V+  G PFYAGWGLT ++ P+ RR+R 
Sbjct  577  AEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRR  636

Query  589  LPLAALVYATYAWYPTYVD  607
            L L  L+ +T   YP Y++
Sbjct  637  LELWQLIAGTLIHYPDYIH  655


 Score =  125 bits (457),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 92/292 (32%), Positives = 179/292 (62%), Gaps = 10/292 (3%)

Query  4    NNATAVVGWGMKPNTERARRLAARKDLPFWQLEDGFVGYIGHPATRATRLSLIVDEVGVY  63
            ++ + +++WG     E   R+A + ++P+ ++EDGF+  +G  +     LSL+ D++++Y
Sbjct  394  SDDARILAWG--NGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIY  451

Query  64   YDATRPSRLEQLLQNIDWWNDDWQQRADALRRILVDQGITKYNCYSGNVLPAAIAARLDN  123
            ++A  PSRLE +LQN +  ++D Q  A  L+++L ++ I+KYN  S++  +++       
Sbjct  452  FNAETPSRLEYILQNQNFDDQDFQT-ALKLQKMLTENHISKYNVGSSDFTAPS------T  504

Query  124  TRPRVLVIDQTKGDQSVRLGLASEASFTNMLAAAKAENPDAQIIVRTHPDVLLGKKQGYL  183
             +  +LV +Q  +D S+R G +      ++L + +  NP+A II + HPDV+ G++ G +
Sbjct  505  DKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHI  564

Query  184  T-DVAGSDVLLLADSVNPFALMAEMDKVYTVTSQLGFEALLAGKPVVCFGAPFYAGWGVT  242
            + + A+      A+  + ++ +   D + T+TS  GFEALL GK V C+G PFYAGWG+T
Sbjct  565  SPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLT  624

Query  243  DDRLAVLRRGEQRTVPQLLAAAYLRYCRYLDPVTGERCELEDLLDLILAQRS  294
            +D L++ RR+ +  + QL+A++ ++Y  Y++P T +  + E   ++++ Q++
Sbjct  625  QDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKN  676

80) G157_01775 in NC_022347


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  377 bits (1417),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 266/649 (41%), Positives = 421/649 (65%), Gaps = 22/649 (3%)

Query  23   YHAYKNITKEDIFVGWGRKNSGLKAIALAKKHNAKFMLLEDGFLRSLNLGIENSPSFSIV  82
            +H  K+    +  VGWG + +  KA A+A  H+  F+ LEDGFLRSL LG+   P++SIV
Sbjct  44   FHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIV  103

Query  83   KDDVGVYYDASTPSRLEN-ILNTYEFSPKELTWakkaielikkeklSKYNN--NLCIPQE  139
             DD+G+YYD++ PSRLE+ IL +   ++  L+ A++A+++I ++ LSKYN+  +L   + 
Sbjct  104  YDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHP  163

Query  140  L-FSANEERVLIITQVANDASLRFGLASDFSTQDIINDALKENPNAKIYIKIHPDVLSGK  198
            L  +++ E VLII Q   D ++++G A   + + +++ AL+ENP+A I +K HPDVL GK
Sbjct  164  LRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGK  223

Query  199  KQSDFSMQDLPSRCVILKENYNPIELLSHFKKVYTKTSGMGFEALMLGCKCVCYGMPFYA  258
            KQ+ ++      R  +L E+ NPI LL +  KVY  TS MGFEAL+ G     +G+P YA
Sbjct  224  KQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYA  283

Query  259  GWGLTQDK------LECKRRIKKRSLEEVFYAAYILYSEYFNPYLNQKSDIFDTIFTLAR  312
            GWG+++D+      L   +R   R+L ++F AAY+ YS Y+NP   + + +FD I  LA 
Sbjct  284  GWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLAT  343

Query  313  YKKIEQVNSHTLYFLGFTLWKRWFMKPFFKAKNNKIIFLNSLNELYKANLNSEDKIFIWG  372
             K+ ++     LY +G +LWKR   KPFF+  + ++ F++S + L + +L+ + +I+ WG
Sbjct  344  VKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWG  403

Query  373  KKYDKAL-LAKDFNNEIFLVEDGFLRSVFLGSDLTRPFSLIVDSKGLYVDPNHPSDLEEL  431
            +  +  + +A + +  ++ +EDGF+RSV LGS+L  P+SL+ D  ++Y +++ PS LE +
Sbjct  404  NGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYI  463

Query  432  LQNHEFDDTLRQRAKKLITTITQNKFSKYNGLKHEKLDFNTNKKIILIPAQVEDDASMIL  491
            LQN++FDD   Q A KL   +T+N +SKYN    +    +T+K +IL+P+QVEDDAS+  
Sbjct  464  LQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRY  523

Query  492  GGAD-FDTLKLLQSVRAANKDAFVVFKPHPDVLSGNRKGLKDKDIILKYCDEIIENVSID  550
            G+++ +  L LL++VR  N +A++++KPHPDV+SGNR G    +   +Y D+  E+  I 
Sbjct  524  GSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADIL  583

Query  551  SAINACDEVHTITSTSGFDALLRGKKVVVYGKPFYAGWGLTQDLHHISRRTRVLSLEELV  610
            + ++  DE+HT+TS +GF+ALLRGKKV  YG PFYAGWGLTQDL  I+RR+R L L +L+
Sbjct  584  TCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLI  643

Query  611  AGVLILYPRYIHPKSKNLCEVELALDTML----------ALQKDYFSKR  649
            AG LI YP YIHP + +  + E A + ++          +L+++ F+K+
Sbjct  644  AGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNNNGLHRGCFAKK  692

81) kpsC in NC_008787


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  374 bits (1404),  Expect = 1e-104, Method: Compositional matrix adjust.
 Identities = 269/666 (41%), Positives = 426/666 (64%), Gaps = 34/666 (5%)

Query  30   KKDDLFFGWGRKKSGLKAMNLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIY  89
            K  +   GWG + +  KA  +A   +  FI LEDGF+RSL LGV   P++S+V DDIGIY
Sbjct  51   KEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIY  110

Query  90   YDATMPSKLENL-LNTCEFKDEEIKQAKKAIELikkykiskynnnLDIPDDYFQKDEKR-  147
            YD+T PS+LE+L L +     E + QA++A+++I +  +SKYN+  +++DD   +   + 
Sbjct  111  YDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKP  170

Query  148  --VLIITQTANDASLEFGLAKGFKTIDMIKDAIKENPKSKIYIKIHPDVLSGKKQSDLDI  205
              VLII QT  D ++++G A +     M++ A++ENP++ I +K HPDVL GKKQ+ L  
Sbjct  171  ETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQ  230

Query  206  NSLPKECILITENFNPIALLEFFDKVYTKTSGMGFEALMQGCECVCYGMPFYAGWGLTKD  265
             +      L++E++NPI+LL+  DKVY  TS MGFEAL+ G     +G+P YAGWG++ D
Sbjct  231  LAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDD  290

Query  266  K------LECKRRMQKRSLEEVFYAAYILYSEYFNPYLNQKSNIFDTIQTLAKYKDIEKA  319
            +      L   +R   R+L ++F AAY+ YS Y+NP   + +++FD I+ LA  K  +  
Sbjct  291  RHPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDK  350

Query  320  NSNRLLMLGFTLWKRHFIKPFFKAKNNEIIFLNSLKSLARYKLKEDDKFFIWGKRIDYNT  379
                L  +G +LWKR   KPFF+  +  + F++S + LAR KL +D +++ WG+      
Sbjct  351  LRGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNG-----  405

Query  380  LKTTLIKKAQDENLLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASK  439
             K ++++ A++    H  P + + EDGFIRS++LGS+L  P+SL+ DD ++Y++++ +S+
Sbjct  406  -KEAIVRFAEQ----HHIPLLRM-EDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSR  459

Query  440  LEELLQNEIFDENILNRAKNIIKILLENRFSKYNGLKHEDLKINAKIGQKIILIPAQVED  499
            LE +LQN+ FD++ ++ A ++ K+L EN++SKYN +   D+   +  ++ +IL+P+QVED
Sbjct  460  LEYILQNQNFDDQDFQTALKLQKMLTENHISKYN-VGSSDFT-APSTDKTVILVPGQVED  517

Query  500  DASMILGGFGL-STLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETRILEFCDEIV  558
            DAS+  G+  +   LDLL+ VR +N +AYII+KPHPDV+SGNR+G         + D+  
Sbjct  518  DASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTA  577

Query  559  KDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKHKCKRRTRKL  618
             +  I + ++ ADEIHT+TS +GF+ALLR+KKV  YG+PFYAGWGLT+D     RR+R+L
Sbjct  578  EQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRL  637

Query  619  SLEELVAGALITYPRYINPKTKTLCEIEVCLDIML----------NLQKAYFSKKYIKLA  668
             L +L+AG+LI YP YI+P T    + E   +I++           L+++ F+KK  K+ 
Sbjct  638  ELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIK  697

Query  669  IDFKTF  674
              +++F
Sbjct  698  QLYRSF  703

82) lipA in NC_014532


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  367 bits (1378),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 286/665 (44%), Positives = 437/665 (66%), Gaps = 29/665 (4%)

Query  74   VATRRMLALPTLRACLPEFQRLCHLGSPRARHAGAVAGWGLKPSTRKAREHADRHRLPYI  133
            +++R +  +P L + LPEF+ +C  G    ++A AV GWGL+P+T+KAR  A  H+LP+I
Sbjct  26   IPSRGIRKIPHLSTLLPEFH-ICKDG----KEAEAVVGWGLRPTTHKARAFAAEHQLPFI  80

Query  134  AIEDGFLRSWGLGVEGHPPHSLVVDPLGIYYDASRPSALENLILAAEHTSEAELARARSG  193
            A+EDGFLRS GLGV G PP S+V D +GIYYD++RPS LE+LILAA+  +   LA+A+ +
Sbjct  81   ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA  140

Query  194  MQQLRELRLSKYNHApdrpl-----fdddrprVLVVDQTAGDASIPGGLAEADDFQRMLE  248
            M+ + + +LSKYNHAP+ +             VL++DQT GD +I  G A+A  F+ M++
Sbjct  141  MDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQ  200

Query  249  SARAEHPESEILVKVHPDVIAGKKEGHLLAAGQLPGCRLIGETLSPWSLLDAVHCVHVVS  308
            +A  E+P+++I VK HPDV+ GKK+G L   +Q    +L++E ++P SLL+ V+ V  V+
Sbjct  201  TALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVT  260

Query  309  SQLGFEALLADKRVVCHGVPFYAGWGLTDDRR-------HCPRRGVPRSLAQVfaaayfg  361
            SQ+GFEALL +K +   G+P YAGWG++DDR+       +  RR+  R+L Q+FAAAY+ 
Sbjct  261  SQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRA-TRNLLQLFAAAYLQ  319

Query  362  yaryaNPYTGQAGDFEQTLELIGDQTRQQRRLAGRWVTYGLSSWKRGFVGDFLGDGTAIR  421
            Y+RY NP TG+AG + + ++ ++   R++ +L G     G+S WKR+    F+   +   
Sbjct  320  YSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSC--  377

Query  422  HLRHNKPPEGAER-----GERLLCWASQLDSAAEQRCRERDHV-LWRMEDGFLRSIGLGV  475
            +L+   + +   R     + R+L W++  ++    R  E++H+ L RMEDGF+RS+GLG 
Sbjct  378  RLKFISSTQKLARVKLSDDARILAWGNGKEAIV--RFAEQHHIPLLRMEDGFIRSVGLGS  435

Query  476  DLARPLSLVVDSLGIHYDANRESELERTLNEASFPPallqraarlrerlvalrlSKYNVP  535
            +L  PLSLV D ++I ++A+  S LE  L++ +F    +Q A +L+  L   ++SKYNV 
Sbjct  436  NLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVG  495

Query  536  GARRLQRPEGGRLLLVPGQVETDASIAHGTFDIRTNGDLLAAVRQANPEARILYKPHPDV  595
            ++     + +  ++LVPGQVE DASI  G+ +I  N DLL +VR+ NP+A I+YKPHPDV
Sbjct  496  SSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDV  555

Query  596  TTGARVGALSPGDERLYdlevgdvdivdl-ldmvdevHTMCSLAGFEALLRGRRVVTYGM  654
             +G R+G +SP D   Y  + ++   +   L+  DE+HTM SL+GFEALLRG++V  YG+
Sbjct  556  VSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGL  615

Query  655  PFYAGWGLTEDRHACPRRRRSLELDALVAATLILYPLYVDPGSRRLCNAETVVALLEQRR  714
            PFYAGWGLT+D  + PRR R LEL  L+A+TLI YP Y++P +++  NAET   +L +++
Sbjct  616  PFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQK  675

Query  715  ADHHQ  719
              + +
Sbjct  676  NMQKN  680

83) Pput_3912 in NC_009512


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  366 bits (1375),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 268/655 (41%), Positives = 423/655 (65%), Gaps = 43/655 (6%)

Query  1    MDDASPRPRLL----ILSKGAQRISTLPALLPEFALQSGAVRDVELADWVMAWGRKPSAI  56
            +++ + R R++    I S+G ++I+ L++LLPEF +     +D   A+ V++WG +P++ 
Sbjct  11   INNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHI----CKDGKEAEAVVGWGLRPTTH  66

Query  57   KAMAEAHKAGKPVLTLEDGFIRSVGLGADE-PPLSLIVDDVGVYYDASQPSRLEQLI--A  113
            KA A A     P ++LEDGF+RS+GLG    PP S++ DD+G+YYD+++PSRLEQLI  A
Sbjct  67   KARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAA  126

Query  114  TPLDAEQTQRALALRSLWQQQRVSKYNDARIELP-------ALPADCVLVADQTCGDASL  166
              + +E   +A     +  Q+++SKYN+A  EL+       +  ++ VL+ DQT GD ++
Sbjct  127  DTMPSETLAQAQQAMDFILQHHLSKYNHAP-ELSDDHPLRSPSKPETVLIIDQTFGDMAI  185

Query  167  Q--GAGASDFRAMLEAALARYPHSTIVLKVHPDVVAGRKAGHFDLAALAGNPRVQVLAHN  224
            Q  GA+AS F  M+++AL   P++ I +K HPDV+ G+K G   L+ LA + RV++LA++
Sbjct  186  QYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGY--LTQLAQQHRVHLLAED  243

Query  225  VHPADLLPRMRAVFVMTSQLGFDALLWDVPVHTWGMPFYAGWGLTDDR------LPAPSR  278
            ++P  LL  +  V+ +TSQ+GF+ALL + P+ T G+P YAGWG++DDR      L    R
Sbjct  244  INPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQR  303

Query  279  RKPVPLAQLIHASLVAYPRYVCPERGQPCTPEVLINWLGLQRRHRSVLPNTVQMLGFSRW  338
            R    L QL+ A+ + Y+RY+ P+ G++ +   +I+ L+  +R    L   +  +G S W
Sbjct  304  RATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLW  363

Query  339  KEPLANLFFNGAA--IRFVKPEQPLA-----QDLPVVSWGCKHDTHLC---AHPLPVNRV  388
            K ++A+ FFN ++  ++F+ + Q LA     +D  +++WG   ++ +     H +P+ R+
Sbjct  364  KRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRM  423

Query  389  EDGFLRSVGLGAGKARPLSWVVDDLGIYYDATRPSRLERILAEEPFDPQllarahalrla  448
            EDGF+RSVGLG+    PLS V DD++IY++A  PSRLE IL ++ FD Q +  A  L+  
Sbjct  424  EDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKM  483

Query  449  icaaGLTKYNLPGASWQRPSHAQRVILVPGQVEGDASIRFGGNRIRSNLQLLRAVREQNP  508
            +    ++KYN+ ++    PS  + VILVPGQVE+DASIR+G+ +I  NL+LLR+VRE+NP
Sbjct  484  LTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNP  543

Query  509  DAWVLYKPHPEVLAGTRARGDDEAQTVHWCDEVIGDTPLQQLLEVVDELHVLTSQSGFEA  568
            +A ++YKPHP+V++G R       ++ +  D+   ++ +   L+  DE+H +TS +GFEA
Sbjct  544  NAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEA  603

Query  569  LLRGVPVTTYGQPFYAGWGLTRDMDLQAPVQARRSRQLTLDQLVAGTLLLYPTYV  623
            LLRG  V+ YG PFYAGWGLT+D+ L  P   RRSR+L L QL+AGTL+ YP Y+
Sbjct  604  LLRGKKVSCYGLPFYAGWGLTQDL-LPIP---RRSRRLELWQLIAGTLIHYPDYI  654

84) kpsC in NC_012039


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  362 bits (1361),  Expect = 4e-101, Method: Compositional matrix adjust.
 Identities = 262/637 (42%), Positives = 401/637 (63%), Gaps = 15/637 (2%)

Query  23   YHAHKNITKEDVFIGWGRKKSGLKAVELAKKYNARFLLLEDGFLRSLNLGMENSPSFSNV  82
            +H  K+    +  +GWG + +  KA  +A   +  F+ LEDGFLRSL LG+   P++S V
Sbjct  44   FHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIV  103

Query  83   KDDVGIYYDATTPSKLEN-ILNTYEFDSKELEQakkaielikkeklSKYNN--NLCVPKE  139
             DD+GIYYD+T PS+LE+ IL +    S  L QA++A+++I ++ LSKYN+  +L     
Sbjct  104  YDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHP  163

Query  140  L-FNINEERVLIITQVANDASLKFGLAENFLTHDIINEAIKENPNAKIYIKIHPDVLSGK  198
            L    + E VLII Q   D ++++G A+    + +++ A++ENP+A I +K HPDVL GK
Sbjct  164  LRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGK  223

Query  199  KQSDFDVQDLSSKCVVIKENYNPIELLSCFKKVYTKTSGMGFEALILGCECVCYGVPFYA  258
            KQ+ +       +  ++ E+ NPI LL    KVY  TS MGFEAL+ G     +G+P YA
Sbjct  224  KQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYA  283

Query  259  GWGLTQDKQ------VCKRRLKKRTLEEVFYATYFLYSEYFNPYLNQKSDIFDTIHTLAK  312
            GWG+++D++      V  +R   R L ++F A+Y+ YS Y+NP   + + +FD I+ LA 
Sbjct  284  GWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLAT  343

Query  313  YKKIEQANSNTLCFLGFSKWKREFVRPFFEAKNNKIIFLNSLDELYKANLNPKDKIFIWG  372
             K+ ++     L  +G S WKR   +PFF+  + ++ F++S + L + +L+   +I+ WG
Sbjct  344  VKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWG  403

Query  373  KKYDKTL-LAKDFSNEIFLVEDGFLRSVFLGSDLTRPFSLIIDSKGLYVDPSKPSDLEDI  431
            +  +  + +A +    ++ +EDGF+RSV LGS+L  P+SL+ D  ++Y ++  PS LE I
Sbjct  404  NGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYI  463

Query  432  LQNHIFDESLKQRAKKLITIIMQNKFSKYNGLKHEKLNFNTNKKIILIPAQVEDDASMIL  491
            LQN+ FD+   Q A KL  ++ +N +SKYN    +    +T+K +IL+P+QVEDDAS+  
Sbjct  464  LQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRY  523

Query  492  GSAG-YDTLKLLQSVRKVNENAFIVFKPHPDVLSGNRKGLKDKSIILKYCDEIIENVSID  550
            GS+  Y  L LL++VR  N NA+I++KPHPDV+SGNR G        +Y D+  E+  I 
Sbjct  524  GSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADIL  583

Query  551  SAINACNEVHTITSTSGFDALLRGKKVVVYGKPFYAGWGLTSDLHKIPRRTRILSLEELV  610
            + ++  +E+HT+TS +GF+ALLRGKKV  YG PFYAGWGLT DL  IPRR+R L L +L+
Sbjct  584  TCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLI  643

Query  611  AGVLILYPRYIHPKSKNLCEVELALDIMLK---MQKD  644
            AG LI YP YIHP + +  + E A +I+++   MQK+
Sbjct  644  AGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKN  680


 Score =  133 bits (487),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 97/309 (32%), Positives = 191/309 (62%), Gaps = 15/309 (4%)

Query  25   AHKNITKEDVFIGWGRKKSGLKAVELAKKYNARFLLLEDGFLRSLNLGMENSPSFSNVKD  84
            A+ +++ +  +++WG  K ++  V +A + +  +L +EDGF+RS+ LG +  P++S V D
Sbjct  389  ARVKLSDDARILAWGNGKEAI--VRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTD  446

Query  85   DVGIYYDATTPSKLENILNTYEFDSKELEQakkaielikkeklSKYNNNLCVPKELFNIN  144
            D++IY++A TPS+LE IL+  +FD ++++ A K   ++  + +SKYN     + ++   +
Sbjct  447  DMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVG---SSDFTAPS  503

Query  145  EER--VLIITQVANDASLKFGLAENFLTHDIINEAIKENPNAKIYIKIHPDVLSGKKQSD  202
             ++  +L+  QV +DAS+++G ++ +   D++      NPNA I  K HPDV+SG++ ++
Sbjct  504  TDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGH  563

Query  203  FDVQDLSSKCVVIKENYNPIELLSCFK---KVYTKTSGMGFEALILGCECVCYGVPFYAG  259
            +  +D +++     +  +  ++L+C++    + T TS  GFEAL+ G    CYG+PFYAG
Sbjct  564  ISPED-AARYA--DQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAG  620

Query  260  WGLTQDKQVCKRRLKKRTLEEVFYATYFLYSEYFNPYLNQKSDIFDTIHTLAKYKKIEQA  319
            WGLTQD     RR ++  L +++ +T + Y++Y++P  +Q  +   + + L + K++++ 
Sbjct  621  WGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKN  680

Query  320  NS--NTLCF  326
            N+  +  CF
Sbjct  681  NNGLHRGCF  689

85) wcbA in NC_019382


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  356 bits (1336),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 258/583 (45%), Positives = 404/583 (70%), Gaps = 17/583 (2%)

Query  61   VPYIALEDGFLRSFGTG-RHFPPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDA  119
            +P+IALEDGFLRS+G G   +PP S+V D +GIYYD+TR S LE L+ ++ T+       
Sbjct  77   LPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQ  136

Query  120  VPEAMELVRERRLSKYNQGGFLATGVPADGRRR---VLVVDQTEGDMSVTLGCaeaatfe  176
              +AM+++ +++LSKYN++  L+ + P  +  +   VL++DQT GDM++  G A+A+TFE
Sbjct  137  AQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFE  196

Query  177  amlaaaraeNPGALICVKTHPEVAAGDKSGYLSRVTDDADTVALRHDMNPLALLEQMDRV  236
             M+ +A  ENP A I VKTHP+V  G K GYL++++++     L +D+NP++LL+++D+V
Sbjct  197  LMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKV  256

Query  237  YVVSSQMGFEALMLDKPVTCFGMPWYAGWGVTDDRQ-------RCERRGRARSVEELFAG  289
            Y V+SQMGFEAL+ +KP+T FG+PWYAGWGV+DDR+       + +RR+ +R++ +LFA+
Sbjct  257  YCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRA-TRNLLQLFAA  315

Query  290  AYFHYTRYLDPVLHRRGTIFDVIDWLTRQRDMAQRLPSRVIGVGMRRWkaaalapmlalk  349
            AY++Y+RYL+P     G++FDVID L+  +   ++L + +  VGM  WK A   P + + 
Sbjct  316  AYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVP  375

Query  350  pGQavfaadaarardlrpaagdaLVHWGARAPAGVAELAEQSGCAVLAVEDGFLRSVGLG  409
            + +  F + + +   ++ + +  ++ WG  +  ++  +AEQ   ++L +EDGF+RSVGLG
Sbjct  376  SCRLKFISSTQKLARVKLSDDARILAWGN-GKEAIVRFAEQHHIPLLRMEDGFIRSVGLG  434

Query  410  SDLIRPLSLALDGRGIYFDPRQPSDLEHELNRGGFSPGELASAARIRALVVAHGITKYNV  469
            S+L+ PLSL  D+ +IYF++  PS LE  L+   F   ++ +A +++ ++  + I+KYNV
Sbjct  435  SNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNV  494

Query  470  AQPQPADWPARGREIVLVPGQVEDDASVRLGCDEVRTNldllaaaraaHPDAYIVYKPHP  529
            + ++ +  P+ ++ ++LVPGQVEDDAS+R G  ++  NLDLL + R  +P+AYI+YKPHP
Sbjct  495  GSSDFTA-PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHP  553

Query  530  DVVSrnrrgrvalrearrHADHVESALSVVSCIQACDVVHTMTSLTGFDALLRGKRVVTY  589
            DVVS NR G+++  +A R AD+      +++C+Q  D +HTMTSLTGF+ALLRGK+V  Y
Sbjct  554  DVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCY  613

Query  590  GKPFYAGWGLTEDRAADWPRGRRTRRLSLDELVAGTLLRYPLY  632
            G PFYAGWGLT+D     P  RR+RRL L +L+AGTL++YP Y
Sbjct  614  GLPFYAGWGLTQDL---LPIPRRSRRLELWQLIAGTLIHYPDY  653


 Score =  111 bits (404),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 87/264 (33%), Positives = 154/264 (59%), Gaps = 3/264 (1%)

Query  61   VPYIALEDGFLRSFGTGRHF-PPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDA  119
            +P + +EDGF+RS G G ++ PPLSLV D ++IY++A   S LE +L +     ++++ A
Sbjct  418  IPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTA  477

Query  120  VPEAMELVRERRLSKYNQGGFLATGVPADGRRRVLVVDQTEGDMSVTLGCaeaatfeaml  179
            +     ++ E ++SKYN G+      P+ ++  +LV +Q E+D S+  G ++      +L
Sbjct  478  L-KLQKMLTENHISKYNVGS-SDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLL  535

Query  180  aaaraeNPGALICVKTHPEVAAGDKSGYLSRVTDDADTVALRHDMNPLALLEQMDRVYVV  239
             + R  NP A I  K HP+V +G++ G +S       +    ++ + L+ L+  D +  +
Sbjct  536  RTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTM  595

Query  240  SSQMGFEALMLDKPVTCFGMPWYAGWGVTDDRQRCERRGRARSVEELFAGAYFHYTRYLD  299
            +S  GFEAL+ +K V+C+G+P YAGWG+T+D     RR+R   + +L+AG+ +HY  Y++
Sbjct  596  TSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIH  655

Query  300  PVLHRRGTIFDVIDWLTRQRDMAQ  323
            P  H+        + L RQ++M +
Sbjct  656  PETHQAINAETAAQILIRQKNMQK  679

86) wcbA in NC_002927


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  356 bits (1336),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 258/583 (45%), Positives = 405/583 (70%), Gaps = 17/583 (2%)

Query  61   VPYIALEDGFLRSFGTG-RHFPPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDA  119
            +P+IALEDGFLRS+G G   +PP S+V D +GIYYD+TR S LE L+ ++ T+       
Sbjct  77   LPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQ  136

Query  120  VPEAMELVRERRLSKYNQGGFLATGVPADGRRR---VLVVDQTEGDMSVTLGCaeaatfe  176
              +AM+++ +++LSKYN++  L+ + P  +  +   VL++DQT GDM++  G A+A+TFE
Sbjct  137  AQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFE  196

Query  177  amlaaaraeNPGALICVKTHPEVAAGDKSGYLSRVTDDADTVALRHDMNPLALLEQMDRV  236
             M+ +A  ENP A I VKTHP+V  G K GYL++++++     L +D+NP++LL+++D+V
Sbjct  197  LMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKV  256

Query  237  YVVSSQMGFEALMLDKPVTCFGMPWYAGWGVTDDRQ-------RCERRGRARSVEELFAG  289
            Y V+SQMGFEAL+ +KP+T FG+PWYAGWGV+DDR+       + +RR+ +R++ +LFA+
Sbjct  257  YCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRA-TRNLLQLFAA  315

Query  290  AYFHYTRYLDPVLHRRGTIFDVIDWLTRQRDMAQRLPSRVIGVGMRRWkaaalapilalk  349
            AY++Y+RYL+P     G++FDVID L+  +   ++L + +  VGM  WK A   P++ + 
Sbjct  316  AYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVP  375

Query  350  pGQavfaadaarardlrpaagdaLVHWGARAPAGVAELAEQSGCAVLAVEDGFLRSVGLG  409
            + +  F + + +   ++ + +  ++ WG  +  ++  +AEQ   ++L +EDGF+RSVGLG
Sbjct  376  SCRLKFISSTQKLARVKLSDDARILAWGN-GKEAIVRFAEQHHIPLLRMEDGFIRSVGLG  434

Query  410  SDLIRPLSLALDGRGIYFDPRQPSDLEHELNRGGFSPGELASAARIRALVVAHGITKYNV  469
            S+L+ PLSL  D+ +IYF++  PS LE  L+   F   ++ +A +++ ++  + I+KYNV
Sbjct  435  SNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNV  494

Query  470  AQPQPADWPARGREIVLVPGQVEDDASVRLGCDEVRTNldllaaaraaHPDAYIVYKPHP  529
            + ++ +  P+ ++ ++LVPGQVEDDAS+R G  ++  NLDLL + R  +P+AYI+YKPHP
Sbjct  495  GSSDFTA-PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHP  553

Query  530  DVVSrnrrgrvalrearrHADHVESALSVVSCIQACDVVHTMTSLTGFDALLRGKRVVTY  589
            DVVS NR G+++  +A R AD+      +++C+Q  D +HTMTSLTGF+ALLRGK+V  Y
Sbjct  554  DVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCY  613

Query  590  GKPFYAGWGLTEDRAADWPRGRRTRRLSLDELVAGTLLRYPLY  632
            G PFYAGWGLT+D     P  RR+RRL L +L+AGTL++YP Y
Sbjct  614  GLPFYAGWGLTQDL---LPIPRRSRRLELWQLIAGTLIHYPDY  653


 Score =  111 bits (404),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 87/264 (33%), Positives = 154/264 (59%), Gaps = 3/264 (1%)

Query  61   VPYIALEDGFLRSFGTGRHF-PPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDA  119
            +P + +EDGF+RS G G ++ PPLSLV D ++IY++A   S LE +L +     ++++ A
Sbjct  418  IPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTA  477

Query  120  VPEAMELVRERRLSKYNQGGFLATGVPADGRRRVLVVDQTEGDMSVTLGCaeaatfeaml  179
            +     ++ E ++SKYN G+      P+ ++  +LV +Q E+D S+  G ++      +L
Sbjct  478  L-KLQKMLTENHISKYNVGS-SDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLL  535

Query  180  aaaraeNPGALICVKTHPEVAAGDKSGYLSRVTDDADTVALRHDMNPLALLEQMDRVYVV  239
             + R  NP A I  K HP+V +G++ G +S       +    ++ + L+ L+  D +  +
Sbjct  536  RTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTM  595

Query  240  SSQMGFEALMLDKPVTCFGMPWYAGWGVTDDRQRCERRGRARSVEELFAGAYFHYTRYLD  299
            +S  GFEAL+ +K V+C+G+P YAGWG+T+D     RR+R   + +L+AG+ +HY  Y++
Sbjct  596  TSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIH  655

Query  300  PVLHRRGTIFDVIDWLTRQRDMAQ  323
            P  H+        + L RQ++M +
Sbjct  656  PETHQAINAETAAQILIRQKNMQK  679

87) wcbA in NC_017223


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  356 bits (1337),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 257/583 (45%), Positives = 403/583 (70%), Gaps = 17/583 (2%)

Query  61   VPYIALEDGFLRSFGTG-RHFPPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDA  119
            +P+IALEDGFLRS+G G   +PP S+V D +GIYYD+TR S LE L+ ++ T+       
Sbjct  77   LPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQ  136

Query  120  VPEAMELVRERRLSKYNQGCFLATGVPADGRRR---VLVVDQTEGDMSVTLGCaeaatfe  176
              +AM+++ +++LSKYN++  L+ + P  +  +   VL++DQT GDM++  G A+A+TFE
Sbjct  137  AQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFE  196

Query  177  amlaaaraeSPGALICVKTHPEVAAGDKSGYLSRVTDDADTVALRHDMNPLALLEQMDRV  236
             M+ +A  E+P A I VKTHP+V  G K GYL++++++     L +D+NP++LL+++D+V
Sbjct  197  LMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKV  256

Query  237  YVVSSQMGFEALMLDKPVTCFGMPWYAGWGVTDDRQ-------RCERRGRARSVEELFAG  289
            Y V+SQMGFEAL+ +KP+T FG+PWYAGWGV+DDR+       + +RR+ +R++ +LFA+
Sbjct  257  YCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRA-TRNLLQLFAA  315

Query  290  AYFHYTRYLDPVLHRRGTIFDVIDWLTRQRDMAQRLPSRVIGVGMRRWkaaalapmlalk  349
            AY++Y+RYL+P     G++FDVID L+  +   ++L + +  VGM  WK A   P + + 
Sbjct  316  AYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVP  375

Query  350  pGQAVFaadaarardlgqaagdalVHWGARAPAGVAELAEQSGCAVLAVEDGFLRSVGLG  409
            + +  F + + +   +  + +  ++ WG  +  ++  +AEQ   ++L +EDGF+RSVGLG
Sbjct  376  SCRLKFISSTQKLARVKLSDDARILAWGN-GKEAIVRFAEQHHIPLLRMEDGFIRSVGLG  434

Query  410  SDLIRPLSLALDGRGIYFDPRQPSDLEHELNRGGFSPGELASAARIRALVVAHGITKYNV  469
            S+L+ PLSL  D+ +IYF++  PS LE  L+   F   ++ +A +++ ++  + I+KYNV
Sbjct  435  SNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNV  494

Query  470  AQPQPADWPARGREIVLVPGQVEDDASVRLGCDEVRTNldllaaaraaHPDAYIVYKPHP  529
            + ++ +  P+ ++ ++LVPGQVEDDAS+R G  ++  NLDLL + R  +P+AYI+YKPHP
Sbjct  495  GSSDFTA-PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHP  553

Query  530  DVVSrnrrgrvalrearrHADHVESALSVVSCIQACDVVHTMTSLTGFDALLRGKRVVTY  589
            DVVS NR G+++  +A R AD+      +++C+Q  D +HTMTSLTGF+ALLRGK+V  Y
Sbjct  554  DVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCY  613

Query  590  GKPFYAGWGLTEDRAADWPRDRRTRRLSLDELVAGTLLRYPLY  632
            G PFYAGWGLT+D     P  RR+RRL L +L+AGTL++YP Y
Sbjct  614  GLPFYAGWGLTQDL---LPIPRRSRRLELWQLIAGTLIHYPDY  653


 Score =  110 bits (402),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 86/264 (33%), Positives = 153/264 (58%), Gaps = 3/264 (1%)

Query  61   VPYIALEDGFLRSFGTGRHF-PPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDA  119
            +P + +EDGF+RS G G ++ PPLSLV D ++IY++A   S LE +L +     ++++ A
Sbjct  418  IPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTA  477

Query  120  VPEAMELVRERRLSKYNQGCFLATGVPADGRRRVLVVDQTEGDMSVTLGCaeaatfeaml  179
            +     ++ E ++SKYN G       P+ ++  +LV +Q E+D S+  G ++      +L
Sbjct  478  L-KLQKMLTENHISKYNVGS-SDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLL  535

Query  180  aaaraeSPGALICVKTHPEVAAGDKSGYLSRVTDDADTVALRHDMNPLALLEQMDRVYVV  239
             + R  +P A I  K HP+V +G++ G +S       +    ++ + L+ L+  D +  +
Sbjct  536  RTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTM  595

Query  240  SSQMGFEALMLDKPVTCFGMPWYAGWGVTDDRQRCERRGRARSVEELFAGAYFHYTRYLD  299
            +S  GFEAL+ +K V+C+G+P YAGWG+T+D     RR+R   + +L+AG+ +HY  Y++
Sbjct  596  TSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIH  655

Query  300  PVLHRRGTIFDVIDWLTRQRDMAQ  323
            P  H+        + L RQ++M +
Sbjct  656  PETHQAINAETAAQILIRQKNMQK  679

88) wcbA in NC_002929


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  356 bits (1337),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 257/583 (45%), Positives = 403/583 (70%), Gaps = 17/583 (2%)

Query  61   VPYIALEDGFLRSFGTG-RHFPPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDA  119
            +P+IALEDGFLRS+G G   +PP S+V D +GIYYD+TR S LE L+ ++ T+       
Sbjct  77   LPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQ  136

Query  120  VPEAMELVRERRLSKYNQGCFLATGVPADGRRR---VLVVDQTEGDMSVTLGCaeaatfe  176
              +AM+++ +++LSKYN++  L+ + P  +  +   VL++DQT GDM++  G A+A+TFE
Sbjct  137  AQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFE  196

Query  177  amlaaaraeSPGALICVKTHPEVAAGDKSGYLSRVTDDADTVALRHDMNPLALLEQMDRV  236
             M+ +A  E+P A I VKTHP+V  G K GYL++++++     L +D+NP++LL+++D+V
Sbjct  197  LMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKV  256

Query  237  YVVSSQMGFEALMLDKPVTCFGMPWYAGWGVTDDRQ-------RCERRGRARSVEELFAG  289
            Y V+SQMGFEAL+ +KP+T FG+PWYAGWGV+DDR+       + +RR+ +R++ +LFA+
Sbjct  257  YCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRA-TRNLLQLFAA  315

Query  290  AYFHYTRYLDPVLHRRGTIFDVIDWLTRQRDMAQRLPSRVIGVGMRRWkaaalapmlalk  349
            AY++Y+RYL+P     G++FDVID L+  +   ++L + +  VGM  WK A   P + + 
Sbjct  316  AYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVP  375

Query  350  pGQAVFaadaarardlgqaagdalVHWGARAPAGVAELAEQSGCAVLAVEDGFLRSVGLG  409
            + +  F + + +   +  + +  ++ WG  +  ++  +AEQ   ++L +EDGF+RSVGLG
Sbjct  376  SCRLKFISSTQKLARVKLSDDARILAWGN-GKEAIVRFAEQHHIPLLRMEDGFIRSVGLG  434

Query  410  SDLIRPLSLALDGRGIYFDPRQPSDLEHELNRGGFSPGELASAARIRALVVAHGITKYNV  469
            S+L+ PLSL  D+ +IYF++  PS LE  L+   F   ++ +A +++ ++  + I+KYNV
Sbjct  435  SNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNV  494

Query  470  AQPQPADWPARGREIVLVPGQVEDDASVRLGCDEVRTNldllaaaraaHPDAYIVYKPHP  529
            + ++ +  P+ ++ ++LVPGQVEDDAS+R G  ++  NLDLL + R  +P+AYI+YKPHP
Sbjct  495  GSSDFTA-PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHP  553

Query  530  DVVSrnrrgrvalrearrHADHVESALSVVSCIQACDVVHTMTSLTGFDALLRGKRVVTY  589
            DVVS NR G+++  +A R AD+      +++C+Q  D +HTMTSLTGF+ALLRGK+V  Y
Sbjct  554  DVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCY  613

Query  590  GKPFYAGWGLTEDRAADWPRDRRTRRLSLDELVAGTLLRYPLY  632
            G PFYAGWGLT+D     P  RR+RRL L +L+AGTL++YP Y
Sbjct  614  GLPFYAGWGLTQDL---LPIPRRSRRLELWQLIAGTLIHYPDY  653


 Score =  110 bits (402),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 86/264 (33%), Positives = 153/264 (58%), Gaps = 3/264 (1%)

Query  61   VPYIALEDGFLRSFGTGRHF-PPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDA  119
            +P + +EDGF+RS G G ++ PPLSLV D ++IY++A   S LE +L +     ++++ A
Sbjct  418  IPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTA  477

Query  120  VPEAMELVRERRLSKYNQGCFLATGVPADGRRRVLVVDQTEGDMSVTLGCaeaatfeaml  179
            +     ++ E ++SKYN G       P+ ++  +LV +Q E+D S+  G ++      +L
Sbjct  478  L-KLQKMLTENHISKYNVGS-SDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLL  535

Query  180  aaaraeSPGALICVKTHPEVAAGDKSGYLSRVTDDADTVALRHDMNPLALLEQMDRVYVV  239
             + R  +P A I  K HP+V +G++ G +S       +    ++ + L+ L+  D +  +
Sbjct  536  RTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTM  595

Query  240  SSQMGFEALMLDKPVTCFGMPWYAGWGVTDDRQRCERRGRARSVEELFAGAYFHYTRYLD  299
            +S  GFEAL+ +K V+C+G+P YAGWG+T+D     RR+R   + +L+AG+ +HY  Y++
Sbjct  596  TSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIH  655

Query  300  PVLHRRGTIFDVIDWLTRQRDMAQ  323
            P  H+        + L RQ++M +
Sbjct  656  PETHQAINAETAAQILIRQKNMQK  679

89) wcbA in NC_018518


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  354 bits (1329),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 257/583 (45%), Positives = 404/583 (70%), Gaps = 17/583 (2%)

Query  61   VPYIALEDGFLRSFGTG-RHFPPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDA  119
            +P+IALEDGFLRS+G G   +PP S+V D +GIYYD+TR S LE L+ ++ T+       
Sbjct  77   LPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQ  136

Query  120  VPEAMELVRERRLSKYNQGCFLATGVPADGRRR---VLVVDQTEGDMSVTLGCaeaatfe  176
              +AM+++ +++LSKYN++  L+ + P  +  +   VL++DQT GDM++  G A+A+TFE
Sbjct  137  AQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFE  196

Query  177  amlaaaraeSPGALICVKTHPEVAAGDKSGYLSRVTDDADTVALRHDMNPLALLEQMDRV  236
             M+ +A  E+P A I VKTHP+V  G K GYL++++++     L +D+NP++LL+++D+V
Sbjct  197  LMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKV  256

Query  237  YVVSSQMGFEALMLDKPVTCFGMPWYAGWGVTDDRQ-------RCERRGRARSVEELFAG  289
            Y V+SQMGFEAL+ +KP+T FG+PWYAGWGV+DDR+       + +RR+ +R++ +LFA+
Sbjct  257  YCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRA-TRNLLQLFAA  315

Query  290  AYFHYTRYLDPVLHRRGTIFDVIDWLTRQRDMAQRLPSRVIGVGMRRWkaaalapmlalk  349
            AY++Y+RYL+P     G++FDVID L+  +   ++L + +  VGM  WK A   P + + 
Sbjct  316  AYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVP  375

Query  350  pGQavfaadaarardlrqaagdaLVHWGARAPAGVAELAEQSGCAVLAVEDGFLRSVGLG  409
            + +  F + + +   ++ + +  ++ WG  +  ++  +AEQ   ++L +EDGF+RSVGLG
Sbjct  376  SCRLKFISSTQKLARVKLSDDARILAWGN-GKEAIVRFAEQHHIPLLRMEDGFIRSVGLG  434

Query  410  SDLIRPLSLALDGRGIYFDPRQPSDLEHELNRGGFSPGELASAARIRALVVAHGITKYNV  469
            S+L+ PLSL  D+ +IYF++  PS LE  L+   F   ++ +A +++ ++  + I+KYNV
Sbjct  435  SNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNV  494

Query  470  AQPQPADWPARGREIVLVPGQVEDDASVRLGCDEVRTNldllaaaraaHPDAYIVYKPHP  529
            + ++ +  P+ ++ ++LVPGQVEDDAS+R G  ++  NLDLL + R  +P+AYI+YKPHP
Sbjct  495  GSSDFTA-PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHP  553

Query  530  DVVSrnrrgrvalrearrHADHVESALSVVSCIQACDVVHTMTSLTGFDALLRGKRVVTY  589
            DVVS NR G+++  +A R AD+      +++C+Q  D +HTMTSLTGF+ALLRGK+V  Y
Sbjct  554  DVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCY  613

Query  590  GKPFYAGWGLTEDRAADWPRDRRTRRLSLDELVAGTLLRYPLY  632
            G PFYAGWGLT+D     P  RR+RRL L +L+AGTL++YP Y
Sbjct  614  GLPFYAGWGLTQDL---LPIPRRSRRLELWQLIAGTLIHYPDY  653


 Score =  110 bits (402),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 86/264 (33%), Positives = 153/264 (58%), Gaps = 3/264 (1%)

Query  61   VPYIALEDGFLRSFGTGRHF-PPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDA  119
            +P + +EDGF+RS G G ++ PPLSLV D ++IY++A   S LE +L +     ++++ A
Sbjct  418  IPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTA  477

Query  120  VPEAMELVRERRLSKYNQGCFLATGVPADGRRRVLVVDQTEGDMSVTLGCaeaatfeaml  179
            +     ++ E ++SKYN G       P+ ++  +LV +Q E+D S+  G ++      +L
Sbjct  478  L-KLQKMLTENHISKYNVGS-SDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLL  535

Query  180  aaaraeSPGALICVKTHPEVAAGDKSGYLSRVTDDADTVALRHDMNPLALLEQMDRVYVV  239
             + R  +P A I  K HP+V +G++ G +S       +    ++ + L+ L+  D +  +
Sbjct  536  RTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTM  595

Query  240  SSQMGFEALMLDKPVTCFGMPWYAGWGVTDDRQRCERRGRARSVEELFAGAYFHYTRYLD  299
            +S  GFEAL+ +K V+C+G+P YAGWG+T+D     RR+R   + +L+AG+ +HY  Y++
Sbjct  596  TSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIH  655

Query  300  PVLHRRGTIFDVIDWLTRQRDMAQ  323
            P  H+        + L RQ++M +
Sbjct  656  PETHQAINAETAAQILIRQKNMQK  679

90) wcbA in NC_002928


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  353 bits (1324),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 257/583 (45%), Positives = 403/583 (70%), Gaps = 17/583 (2%)

Query  1    MPYIALEDGFLRSFGTG-RHFPPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDA  59
            +P+IALEDGFLRS+G G   +PP S+V D +GIYYD+TR S LE L+ ++ T+       
Sbjct  77   LPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQ  136

Query  60   VPEAMELVRERRLSKYNHGGFLATGVPADGRRR---VLVVDQTEGDMSVTLGCaeaatfe  116
              +AM+++ +++LSKYNH+  L+ + P  +  +   VL++DQT GDM++  G A+A+TFE
Sbjct  137  AQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFE  196

Query  117  amlaaaraeNPGALICVKTHPEVAAGDKSGYLSRVTDDADTLALRHDMNPLALLEQMDRV  176
             M+ +A  ENP A I VKTHP+V  G K GYL++++++     L +D+NP++LL+++D+V
Sbjct  197  LMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKV  256

Query  177  YVVSSQMGFEALMLDKPVICFGMPWYAGWGVTDDRQ-------RCERRGRARSVEELFAG  229
            Y V+SQMGFEAL+ +KP+  FG+PWYAGWGV+DDR+       + +RR+ +R++ +LFA+
Sbjct  257  YCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRA-TRNLLQLFAA  315

Query  230  AYFHYTRYLDPVLHRRGTIFDVIDWLTRQRDMAQRLPSRVIGVGMRRWkaaalapmlalk  289
            AY++Y+RYL+P     G++FDVID L+  +   ++L + +  VGM  WK A   P + + 
Sbjct  316  AYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVP  375

Query  290  pGQavfaadaarardlrpaagdaLVHWGARAPAGVAELAEQSGCAVLAVEDGFLRSVGLG  349
            + +  F + + +   ++ + +  ++ WG  +  ++  +AEQ   ++L +EDGF+RSVGLG
Sbjct  376  SCRLKFISSTQKLARVKLSDDARILAWGN-GKEAIVRFAEQHHIPLLRMEDGFIRSVGLG  434

Query  350  SDLIRPLSLALDGRGIYFDPRQPSDLEHELNRGGFSLGELASAARIRALVVAHGITKYNV  409
            S+L+ PLSL  D+ +IYF++  PS LE  L+   F   ++ +A +++ ++  + I+KYNV
Sbjct  435  SNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNV  494

Query  410  AQPQPADWPARGREIVLVPGQVEDDASVRLGCDEVRTNldllaaaraaHPDAYIVYKPHP  469
            + ++ +  P+ ++ ++LVPGQVEDDAS+R G  ++  NLDLL + R  +P+AYI+YKPHP
Sbjct  495  GSSDFTA-PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHP  553

Query  470  DVVSrnrrgrvalrearrHADHVESALSVVSCIQACDVVHTMTSLTGFDALLRDKRVVTY  529
            DVVS NR G+++  +A R AD+      +++C+Q  D +HTMTSLTGF+ALLR+K+V  Y
Sbjct  554  DVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCY  613

Query  530  GKPFYAGWGLTEDRAADWPRDRRTRRLSLDELVAGTLLRYPLY  572
            G PFYAGWGLT+D     P  RR+RRL L +L+AGTL++YP Y
Sbjct  614  GLPFYAGWGLTQDL---LPIPRRSRRLELWQLIAGTLIHYPDY  653


 Score =  108 bits (393),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 87/264 (33%), Positives = 153/264 (58%), Gaps = 3/264 (1%)

Query  1    MPYIALEDGFLRSFGTGRHF-PPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDA  59
            +P + +EDGF+RS G G ++ PPLSLV D ++IY++A   S LE +L +     ++++ A
Sbjct  418  IPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTA  477

Query  60   VPEAMELVRERRLSKYNHGGFLATGVPADGRRRVLVVDQTEGDMSVTLGCaeaatfeaml  119
            +     ++ E ++SKYN G+      P+ ++  +LV +Q E+D S+  G ++      +L
Sbjct  478  L-KLQKMLTENHISKYNVGS-SDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLL  535

Query  120  aaaraeNPGALICVKTHPEVAAGDKSGYLSRVTDDADTLALRHDMNPLALLEQMDRVYVV  179
             + R  NP A I  K HP+V +G++ G +S       +    ++ + L+ L+  D +  +
Sbjct  536  RTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTM  595

Query  180  SSQMGFEALMLDKPVICFGMPWYAGWGVTDDRQRCERRGRARSVEELFAGAYFHYTRYLD  239
            +S  GFEAL+ +K V C+G+P YAGWG+T+D     RR+R   + +L+AG+ +HY  Y++
Sbjct  596  TSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIH  655

Query  240  PVLHRRGTIFDVIDWLTRQRDMAQ  263
            P  H+        + L RQ++M +
Sbjct  656  PETHQAINAETAAQILIRQKNMQK  679

91) SUN_1712 in NC_009663


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  350 bits (1316),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 254/629 (41%), Positives = 395/629 (63%), Gaps = 26/629 (4%)

Query  26   GWGRKRTGRFASLCHNVFGGKLTLS----EDGFIRSIGLGSDRWEAFSIVKDDVGIYYDA  81
            GWG + T + A      F++   L+    EDGF+RS+GLG     ++SIV DD+GIYYD+
Sbjct  58   GWGLRPTTHKA----RAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDT  113

Query  82   TRPSRLENIFNTYNFGNDAKCMETAKRAIELIKAYKISKYNHVYAKLPDY--LESPAR--  137
            TRPSRLE+++ + +    +  +  A++A+++I    +SKYNH  + L+D   L SP++  
Sbjct  114  TRPSRLEQLILAAD-TMPSETLAQAQQAMDFILQHHLSKYNHA-PELSDDHPLRSPSKPE  171

Query  138  KVLIVAQTAGDASLCYGMTKQFDAKEMIVCAIEENRDCEVYVKIHPDVLSGRKASSIDID  197
             VLI+ QT GD ++ YG +       M+  A++EN + ++ VK HPDVL G+K + +   
Sbjct  172  TVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQL  231

Query  198  FAGKHCRIIDEEINPVVLMEAFDKVYTQTSQMGFEALLLGKKVVCFGMPFYAGWGLTDDR  257
                + +++ E+INP+ L++  DKVY  TSQMGFEALL GK +  FG+P YAGWG++DDR
Sbjct  232  AQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDR  291

Query  258  ------VFCKRRKRQLSMEEIFAGAYILYSEYYNPYGKKECDIIETIEMIQRYRSLYQDN  311
                  +   +R+   ++ ++FA+AY+ YS Y NP       +++ I+ +   +   +  
Sbjct  292  HPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKL  351

Query  312  NGKLYFFGFSRWKQRSIKFFFKPLQRNQCFFCNSLKCAAEKRIDKDSKVFIWGKKDFSEV  371
             G LY  G S WK+   K FF+       F+ ++ K  A  ++  D++++ WG+     +
Sbjct  352  RGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQK-LARVKLSDDARILAWGNGK-EAI  409

Query  372  VIYAKKNNLPMYRIEDGFVRSVSLGSDLTRPYSLVVDRRGIYFDPTTVSDLEYILQNLEF  431
            V +A ++++P+ R+EDGF+RSV+LGS+L  P SLV D  +IYF++ T S LEYILQN +F
Sbjct  410  VRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNF  469

Query  432  DEVLLERAKWVQNYLVENNISKYNIEGDKEVLLPTLKPKQIVALVIGQVEDDASIVYGGD  491
            D+  ++ A  +Q+ L EN+ISKYN+ +     + +    + V LV GQVEDDASI YG+ 
Sbjct  470  DDQDFQTALKLQKMLTENHISKYNVGSSD---FTAPSTDKTVILVPGQVEDDASIRYGSP  526

Query  492  GM-TNFELLRKVREIKPDAYIIYKPHPDVQAGNRRGKVSKGMIEKYADIMIKDVSLPALL  550
             +  N++LLR VRE +P+AYIIYKPHPDV +GNR G +S     +YAD    +  + + L
Sbjct  527  QIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCL  586

Query  551  HQCNEVHTITSLSGFEGMLRSKEVYTYGMPFYAGWGLTIDARKYARRTKKITLLQMIAAV  610
            +  +E+HT+TSL+GFE++LR+K V  YG+PFYAGWGLT D    +RR++++ L Q+IA+ 
Sbjct  587  QYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGT  646

Query  611  YIVYPRYIDPKTGCFCEAEVLFEAVEKEK  639
             I YP YI+P T    +AE   + + ++K
Sbjct  647  LIHYPDYIHPETHQAINAETAAQILIRQK  675

92) wcbA in NC_018829


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  345 bits (1295),  Expect = 6e-96, Method: Compositional matrix adjust.
 Identities = 258/582 (45%), Positives = 401/582 (69%), Gaps = 15/582 (2%)

Query  61   VPYIALEDGFLRSFGTG-RHFPPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDA  119
            +P+IALEDGFLRS+G G   +PP S+V D +GIYYD+TR S LE L+ ++ T+       
Sbjct  77   LPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQ  136

Query  120  VPEAMELVRERRLSKYNQGGFLATGVPADGRRR---VLVVDQTEGDMSVTLGCaeaatfe  176
              +AM+++ +++LSKYN++  L+ + P  +  +   VL++DQT GDM++  G A+A+TFE
Sbjct  137  AQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFE  196

Query  177  amlaaaraeNPGALICVKTHPEVAAGDKSGYLSRVADDADTVVLRHDMNPLALLEQMDRV  236
             M+ +A  ENP A I VKTHP+V  G K GYL+++A++    +L +D+NP++LL+++D+V
Sbjct  197  LMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKV  256

Query  237  YVVSSQMGFEALMLGKPVACFGMPWYAGWGVTDDrq------rcerrgrersveeLFAGA  290
            Y V+SQMGFEAL+ GKP++ FG+PWYAGWGV+DDR+         +R   R++ +LFA+A
Sbjct  257  YCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAA  316

Query  291  YFHYTRYLDPVLHRRGTIFDVIDWLTRQRDMAQRLPSRVIGVGMRRWkaaalapmlalkp  350
            Y++Y+RYL+P     G++FDVID L+  +   ++L + +  VGM  WK A   P + + +
Sbjct  317  YLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPS  376

Query  351  GQavfaadaarardlrpaagdaLVHWGARAPAGVAELAEQSGCAVLAVEDGFLRSVGLGS  410
             +  F + + +   ++ + +  ++ WG  +  ++  +AEQ   ++L +EDGF+RSVGLGS
Sbjct  377  CRLKFISSTQKLARVKLSDDARILAWGN-GKEAIVRFAEQHHIPLLRMEDGFIRSVGLGS  435

Query  411  DLIRPLSLALDGRGIYFDPRQPSDLEHELNRGGFSPGELASAARIRALVVAHGITKYNVA  470
            +L+ PLSL  D+ +IYF++  PS LE  L+   F   ++ +A +++ ++  + I+KYNV+
Sbjct  436  NLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVG  495

Query  471  QPQPADWPARGREIVLVPGQVEDDASVRLGCDEVRTNldllaaaraaHPDAYIVYKPHPD  530
             ++ +  P+ ++ ++LVPGQVEDDAS+R G  ++  NLDLL + R  +P+AYI+YKPHPD
Sbjct  496  SSDFTA-PSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPD  554

Query  531  VVSrnrrgrvalrearrHADHVESALSVVSCIQACDVVHTMTSLTGFDALLRGKRVVTYG  590
            VVS NR G+++  +A R AD+      +++C+Q  D +HTMTSLTGF+ALLRGK+V  YG
Sbjct  555  VVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYG  614

Query  591  KPFYAGWGLTEDRAADWPRDRRTRRLSLDELVAGTLLRYPLY  632
             PFYAGWGLT+D     P  RR+RRL L +L+AGTL++YP Y
Sbjct  615  LPFYAGWGLTQDL---LPIPRRSRRLELWQLIAGTLIHYPDY  653


 Score =  105 bits (380),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 88/264 (34%), Positives = 154/264 (59%), Gaps = 3/264 (1%)

Query  61   VPYIALEDGFLRSFGTGRHF-PPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDA  119
            +P + +EDGF+RS G G ++ PPLSLV D ++IY++A   S LE +L +     ++++ A
Sbjct  418  IPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTA  477

Query  120  VPEAMELVRERRLSKYNQGGFLATGVPADGRRRVLVVDQTEGDMSVTLGCaeaatfeaml  179
            +     ++ E ++SKYN G+      P+ ++  +LV +Q E+D S+  G ++      +L
Sbjct  478  L-KLQKMLTENHISKYNVGS-SDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLL  535

Query  180  aaaraeNPGALICVKTHPEVAAGDKSGYLSRVADDADTVVLRHDMNPLALLEQMDRVYVV  239
             + R  NP A I  K HP+V +G++ G +S       +    ++ + L+ L+  D +  +
Sbjct  536  RTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQYADEIHTM  595

Query  240  SSQMGFEALMLGKPVACFGMPWYAGWGVTDDrqrcerrgrersveeLFAGAYFHYTRYLD  299
            +S  GFEAL+ GK V+C+G+P YAGWG+T+D     RR+R   + +L+AG+ +HY  Y++
Sbjct  596  TSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGTLIHYPDYIH  655

Query  300  PVLHRRGTIFDVIDWLTRQRDMAQ  323
            P  H+        + L RQ++M +
Sbjct  656  PETHQAINAETAAQILIRQKNMQK  679

93) PPUBIRD1_3815 in NC_017530


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  331 bits (1243),  Expect = 7e-92, Method: Compositional matrix adjust.
 Identities = 237/572 (42%), Positives = 372/572 (66%), Gaps = 35/572 (6%)

Query  1    MGLGADE-PPLSLIVDDVGVYYDASQPSRLEQLI--ATPLNAEQTQRALALRSLWQQQRV  57
            +GLG    PP S++ DD+G+YYD+++PSRLEQLI  A  + +E   +A     +  Q+++
Sbjct  90   LGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHL  149

Query  58   SKYNDARIELP-------ALPADCVLVADQTCGDASLQ--GAGASDFRAMLEAALARYPH  108
            SKYN+A  EL+       +  ++ VL+ DQT GD ++Q  GA+AS F  M+++AL   P+
Sbjct  150  SKYNHAP-ELSDDHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQ  208

Query  109  STIVLKVHPDVVAGRKAGHFDLAALAGNPRVQVLAHNVHPADLLPRMRAVFVMTSQLGFD  168
            + I +K HPDV+ G+K G   L+ LA + RV++LA++++P  LL  +  V+ +TSQ+GF+
Sbjct  209  ADIWVKTHPDVLCGKKQGY--LTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFE  266

Query  169  ALLWDVPVHTWGMPFYAGWGLTDDRLPA------PSRRKPVPLAQLIHASLVAYPRYVCP  222
            ALL + P+ T G+P YAGWG++DDR P         RR    L QL+ A+ + Y+RY+ P
Sbjct  267  ALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLNP  326

Query  223  ERGQPCTPEVLINWLGLQRRHRSVLPDTVQMLGFSRWKEPLANLFFNGAA--IRFVNPEQ  280
            + G++ +   +I+ L+  +R    L + +  +G S WK ++A+ FFN ++  ++F+++ Q
Sbjct  327  NTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQ  386

Query  281  PLA-----QDLPVVSWGCKHDTHL---SAHPLPVNRVEDGFLRSVGLGAGKARPLSWVVD  332
             LA     +D  +++WG   ++ +     H +P+ R+EDGF+RSVGLG+    PLS V D
Sbjct  387  KLARVKLSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTD  446

Query  333  DLGIYYDATRPSRLERILAEEPFDPQllarayalrlaicaaGLTKYNLPGASWQRPAHAQ  392
            D++IY++A  PSRLE IL ++ FD Q +  A  L+  +    ++KYN+ ++    P+  +
Sbjct  447  DMSIYFNAETPSRLEYILQNQNFDDQDFQTALKLQKMLTENHISKYNVGSSDFTAPSTDK  506

Query  393  RVILVPGQVEGDASIRFGGNRIRSNLQLLRAVREQNPDAWVLYKPHPEVLAGTRARGDDE  452
             VILVPGQVE+DASIR+G+ +I  NL+LLR+VRE+NP+A ++YKPHP+V++G R      
Sbjct  507  TVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISP  566

Query  453  AQTVHWCDEVIGDTPLQQLLEVVDELHVLTSQSGFEALLRGVPVTTYGQPFYAGWGLTRD  512
             ++ +  D+   ++ +   L+  DE+H +TS +GFEALLRG  V+ YG PFYAGWGLT+D
Sbjct  567  EDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQD  626

Query  513  MDLQAPVQARRSRQLTLDQLVAGTLLLYPTYV  544
            + L  P   RRSR+L L QL+AGTL+ YP Y+
Sbjct  627  L-LPIP---RRSRRLELWQLIAGTLIHYPDYI  654


 Score =  120 bits (440),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 104/273 (39%), Positives = 161/273 (59%), Gaps = 16/273 (5%)

Query  287  PVVSWGCKHDTH-----LSAHPLPVNRVEDGFLRSVGLGAGKARPLSWVVDDLGIYYDAT  341
            +VV+WG +  TH      + H LP   +EDGFLRS+GLG +   P S V DD+GIYYD+T
Sbjct  55   AVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTT  114

Query  342  RPSRLER-ILAEEPFDPQllarayalrlaicaaGLTKYN----LPGASWQRPAHAQRVIL  396
            RPSRLE+ ILA +   ++ LA+A      I    L+KYN    L++    R++     +L
Sbjct  115  RPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSDDHPLRSPSKPETVL  174

Query  397  VPGQVEGDASIRFGGNRIRSNLQLLRAVREQNPDA--WVLYKPHPEVLAGTRARGDDEAQ  454
            + +Q  GD +I++GG    +   ++++  ++NP+A  WV  K HP+VL G +     +  
Sbjct  175  IIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWV--KTHPDVLCGKKQGYLTQLA  232

Query  455  TVHWCDEVIGDTPLQQLLEVVDELHVLTSQSGFEALLRGVPVTTYGQPFYAGWGLT--RD  512
              H+ + +  D     LL+ VD +  +TSQ GFEALL G P+TT+G P YAGWG++  R+
Sbjct  233  QQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRH  292

Query  513  MDLQAPVQARRSRQLTLDQLVAGTLLLYPTYVS  545
             +++  VQ++R     L QL A++ L Y+ Y++
Sbjct  293  PEINRLVQTQRRATRNLLQLFAAAYLQYSRYLN  325

94) kpsC in NC_003911


> NC_003112_P1|17|G16|15676015|NP_273145.1|Neisseria_meningitidis_MC58|+|15622..17736|lipA|NMB0082|capsule 
polysaccharide modification 
protein
Length=704

 Score =  313 bits (1175),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 262/625 (42%), Positives = 376/625 (61%), Gaps = 38/625 (6%)

Query  47   SEGDQVGIWGNSPTAHRGLAVAARHAAPLLRVEDAFLRSLFPGRAGEPPLGLLLDRAGVH  106
             E++ V  WG  PT+H++ A AA H  P++ +ED+FLRSL  G AG PP +++ D  G+ 
Sbjct  51   KEAEAVVGWGLRPTTHKARAFAAEHQLPFIALEDGFLRSLGLGVAGYPPYSIVYDDIGIY  110

Query  107  FDPTTPSDLEQLLTSAPLDDTTLLNRARDAMARIRENHLSKYCATDPDL----PL---PE  159
            +D T PS LEQL+ +A    +  L +A++AM  I ++HLSKY    P+L    PL   + 
Sbjct  111  YDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKY-NHAPELSDDHPLRSPSK  169

Query  160  PGYVLVIDQTRGDASVTASGGNDALFREMLVFAQEEHPGARVLIKTHPETAAGFRPGYYG  219
            P  VL+IDQT GD ++  +G++ + F  M+  A +E+P A + +KTHP+   G + GY  
Sbjct  170  PETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLT  229

Query  220  ERDISVRVSLYDAPLSPWALLDGAVGVYTLSSQLGFEAILAGHKPRVFGQPFYAGWGLTL  279
            +     RV L    ++P +LL+    VY ++SQ+GFEA+L G     FG P YAGWG++ 
Sbjct  230  QLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSD  289

Query  280  DEHPVPRR----ERRLTRA--QLFAAAMILYPTWYDPFGDKLCELETVLDTLEAQTRAWR  333
            D HP   R    +RR TR   QLFAAA + Y+   +P  +    L  V+D L +  R   
Sbjct  290  DRHPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKND  349

Query  334  QDRAGWTAGGMRLWKRRPLKRMFG-------------RFGRISFTDTPAA---GDPRPHM  377
            + R+     GM LWKR   K  F              +++R+ ++D +     G+ +  +
Sbjct  350  KLRGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAI  409

Query  378  VWaaraaasdtatrVEDGFLRSRGLGAELVPPLSLVTDDSGIYYDPTRPSALESLIARRA  437
            V+           R+EDGF+RS GLG++LVPPLSLVTDD +IY+++  PS LE ++ +  
Sbjct  410  VR-FAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYIL-QNQ  467

Query  438  ELRADQRQRAEALIRMLTTARISKYNLGGALPDLPPGHR--ILVPGQVEDDASILTGTGE  495
            ++  ++ Q A  L +MLT  +ISKYN+G++    P+ ++  ILVPGQVEDDASI  G+ +
Sbjct  468  NFDDQDFQTALKLQKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQ  527

Query  496  IRSNLDLLRSVRAAHPQAVIVYKPHPDVEAGLRVGGIDPGT---LADVIATQADPMQLLD  552
            I  NLDLLR+VR  +P+A I+YKPHPDV +G R+G I P      AD  A QAD +  L+
Sbjct  528  IYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQ  587

Query  553  QVNEVWTLTSLLGFEALLRGLPVTTLGAPFYAGWGLTRDLGPIPARRQARPDLAGLVHAA  612
              +E+ T+TSL GFEALLRG  V+  G PFYAGWGLT+DL PIP RR  R +L  L+ ++
Sbjct  588  YADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIP-RRSRRLELWQLIAGT  646

Query  613  LIDYPRYWDPRTGQPCPVEVAAQRL  637
            LI+YP Y +P T Q+   E AAQ L
Sbjct  647  LIHYPDYIHPETHQAINAETAAQIL  671


 Score =  111 bits (405),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 98/313 (32%), Positives = 169/313 (54%), Gaps = 6/313 (1%)

Query  47   SEGDQVGIWGNSPTAHRGLAVAARHAAPLLRVEDAFLRSLFPGRAGEPPLGLLLDRAGVH  106
            S++ ++  WGN+  A   +  A +H  PLLR+ED+F+RS+  G    PPL+L+ D  ++ 
Sbjct  394  SDDARILAWGNGKEA--IVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIY  451

Query  107  FDPTTPSDLEQLLTSAPLDDTTLLNRARDAMARIRENHLSKYCATDPDLPLPEPGYVLVI  166
            F++ TPS LE +L +  +DD  + + A      + ENH+SKY    +D+  P  +  +++
Sbjct  452  FNAETPSRLEYILQNQNFDDQDF-QTALKLQKMLTENHISKYNVGSSDFTAPSTDKTVIL  510

Query  167  DQTRGDASVTASGGNDALFR--EMLVFAQEEHPGARVLIKTHPETAAGFRPGYYGERDIS  224
               + +   +   G+  ++R  ++L   +E +P A ++ K HP+  +G R G  +  D +
Sbjct  511  VPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAA  570

Query  225  VRVSLYDAPLSPWALLDGAVGVYTLSSQLGFEAILAGHKPRVFGQPFYAGWGLTLDEHPV  284
                         + L+ A  + T++S  GFEA+L G K   +G PFYAGWGLT D  P+
Sbjct  571  RYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPI  630

Query  285  PRRERRLTRAQLFAAAMILYPTWYDPFGDKLCELETVLDTLEAQTRAWRQDRA-GWTAGG  343
            PRR RRL   QL+A+++I YP   +P  ++  + ET  + L  Q    +++ +  +   +
Sbjct  631  PRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNNNGLHRGCFA  690

Query  344  MRLWKRRPLKRMF  356
             +L K + L R F
Sbjct  691  KKLGKIKQLYRSF  703