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Homologs of unnamed gene of EF611303

156

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) A458_08065
( YP_006457282.1 )

reverse transcriptase

NC_018028
(Pseudomonas stutzeri CCUG 29243)

0.0

2) YSA_00620
( YP_006384223.1 )

reverse transcriptase

NC_017986
(Pseudomonas putida ND6)

8e-178

3) PPS_0137
( YP_004699606.1 )

reverse transcriptase

NC_015733
(Pseudomonas putida S16)

8e-178

4) PPS_3362
( YP_004702789.1 )

reverse transcriptase

NC_015733
(Pseudomonas putida S16)

8e-178

5) PPS_0784
( YP_004700243.1 )

reverse transcriptase

NC_015733
(Pseudomonas putida S16)

1e-169

6) PST_1704
( YP_001172226.1 )

reverse transcriptase

NC_009434
(Pseudomonas stutzeri A1501)

8e-149

7) Clopa_4922
( YP_007943270.1 )

Retron-type reverse transcriptase

NC_021183
(Clostridium pasteurianum BC1)

1e-126

8) Dtox_4019
( YP_003193327.1 )

RNA-directed DNA polymerase

NC_013216
(Desulfotomaculum acetoxidans DSM 771)

2e-125

9) Sulac_3603
( YP_005267011.1 )

RNA-directed DNA polymerase

NC_016888
(Sulfobacillus acidophilus DSM 10332)

5e-124

10) TPY_2264
( YP_004720173.1 )

RNA-directed DNA polymerase

NC_015757
(Sulfobacillus acidophilus TPY)

5e-124

11) MA2797
( NP_617694.1 )

reverse transcriptase

NC_003552
(Methanosarcina acetivorans C2A)

4e-123

12) MA4183
( NP_619050.1 )

reverse transcriptase

NC_003552
(Methanosarcina acetivorans C2A)

4e-123

13) MA4626
( NP_619481.1 )

reverse transcriptase

NC_003552
(Methanosarcina acetivorans C2A)

3e-121

14) B1NLA3E_20205
( YP_007912282.1 )

RNA-directed DNA polymerase

NC_021171
(Bacillus sp. 1NLA3E)

8e-119

15) SM_b21045
( NP_437164.1 )

reverse transcriptasematurase

NC_003078
(Sinorhizobium meliloti 1021)

2e-118

16) SM2011_b21045
( YP_007613384.1 )

RNA-directed DNA polymerase

NC_020560
(Sinorhizobium meliloti 2011)

2e-118

17) SM11_chr3058
( YP_005721563.1 )

putative reverse transcriptasematurase protein

NC_017325
(Sinorhizobium meliloti SM11)

2e-118

18) SM11_chr3620
( YP_005722110.1 )

putative reverse transcriptasematurase protein

NC_017325
(Sinorhizobium meliloti SM11)

2e-118

19) SM11_pD0883
( YP_005723216.1 )

putative reverse transcriptasematurase protein

NC_017326
(Sinorhizobium meliloti SM11)

2e-118

20) SM11_pC0024
( YP_005723906.1 )

RNA-directed DNA polymerase

NC_017327
(Sinorhizobium meliloti SM11)

2e-118

21) SM11_pC0528
( YP_005724410.1 )

RNA-directed DNA polymerase

NC_017327
(Sinorhizobium meliloti SM11)

2e-118

22) SM11_pC0707
( YP_005724589.1 )

RNA-directed DNA polymerase

NC_017327
(Sinorhizobium meliloti SM11)

2e-118

23) Sinac_3457
( YP_007203410.1 )

Retron-type reverse transcriptase

NC_019892
(Singulisphaera acidiphila DSM 18658)

2e-118

24) Sinac_5800
( YP_007205622.1 )

Retron-type reverse transcriptase

NC_019892
(Singulisphaera acidiphila DSM 18658)

2e-118

25) Sinac_6313
( YP_007206091.1 )

Retron-type reverse transcriptase

NC_019892
(Singulisphaera acidiphila DSM 18658)

2e-118

26) Sinac_6701
( YP_007206467.1 )

Retron-type reverse transcriptase

NC_019892
(Singulisphaera acidiphila DSM 18658)

2e-118

27) Sinac_6831
( YP_007206587.1 )

Retron-type reverse transcriptase

NC_019892
(Singulisphaera acidiphila DSM 18658)

2e-118

28) SinmeB_0629
( YP_005712809.1 )

RNA-directed DNA polymerase

NC_017322
(Sinorhizobium meliloti BL225C)

3e-118

29) SinmeB_0952
( YP_005713123.1 )

RNA-directed DNA polymerase

NC_017322
(Sinorhizobium meliloti BL225C)

3e-118

30) SinmeB_3507
( YP_005715640.1 )

RNA-directed DNA polymerase

NC_017323
(Sinorhizobium meliloti BL225C)

3e-118

31) SinmeB_3643
( YP_005715773.1 )

RNA-directed DNA polymerase

NC_017323
(Sinorhizobium meliloti BL225C)

3e-118

32) SinmeB_5740
( YP_005717722.1 )

RNA-directed DNA polymerase

NC_017324
(Sinorhizobium meliloti BL225C)

3e-118

33) C770_GR4Chr1748
( YP_007190287.1 )

Retron-type reverse transcriptase

NC_019845
(Sinorhizobium meliloti GR4)

3e-118

34) C770_GR4Chr1869
( YP_007190398.1 )

Retron-type reverse transcriptase

NC_019845
(Sinorhizobium meliloti GR4)

3e-118

35) C770_GR4Chr3316
( YP_007191798.1 )

Retron-type reverse transcriptase

NC_019845
(Sinorhizobium meliloti GR4)

3e-118

36) C770_GR4Chr3415
( YP_007191891.1 )

Retron-type reverse transcriptase

NC_019845
(Sinorhizobium meliloti GR4)

3e-118

37) C770_GR4pB199
( YP_007192270.1 )

Retron-type reverse transcriptase

NC_019847
(Sinorhizobium meliloti GR4)

3e-118

38) C770_GR4pC0539
( YP_007192860.1 )

Retron-type reverse transcriptase

NC_019848
(Sinorhizobium meliloti GR4)

3e-118

39) C770_GR4pC0643
( YP_007192962.1 )

Retron-type reverse transcriptase

NC_019848
(Sinorhizobium meliloti GR4)

3e-118

40) C770_GR4pC0770
( YP_007193083.1 )

Retron-type reverse transcriptase

NC_019848
(Sinorhizobium meliloti GR4)

3e-118

41) C770_GR4pC0899
( YP_007193197.1 )

Retron-type reverse transcriptase

NC_019848
(Sinorhizobium meliloti GR4)

3e-118

42) C770_GR4pC1103
( YP_007193391.1 )

Retron-type reverse transcriptase

NC_019848
(Sinorhizobium meliloti GR4)

3e-118

43) BN406_06101
( YP_006843383.1 )

RNA-directed DNA polymerase

NC_018701
(Sinorhizobium meliloti Rm41)

3e-118

44) SMa1801
( NP_436239.1 )

Reverse transcriptase, maturase

NC_003037
(Sinorhizobium meliloti 1021)

5e-118

45) SM_b20780
( NP_438012.1 )

reverse transcriptasematurase of intron RmInt1 protein

NC_003078
(Sinorhizobium meliloti 1021)

5e-118

46) SM2011_a1801
( YP_007572953.1 )

Reverse transcriptase,maturase

NC_020527
(Sinorhizobium meliloti 2011)

5e-118

47) SM2011_b20780
( YP_007614229.1 )

RNA-directed DNA polymerase

NC_020560
(Sinorhizobium meliloti 2011)

5e-118

48) BpOF4_20224
( YP_003428936.1 )

RNA-directed DNA polymerase

NC_013792
(Bacillus pseudofirmus OF4)

5e-118

49) Ppha_0416
( YP_002017360.1 )

RNA-directed DNA polymerase

NC_011060
(Pelodictyon phaeoclathratiforme BU-1)

8e-118

50) Ppha_0963
( YP_002017867.1 )

RNA-directed DNA polymerase

NC_011060
(Pelodictyon phaeoclathratiforme BU-1)

8e-118

51) Ppha_1076
( YP_002017973.1 )

RNA-directed DNA polymerase

NC_011060
(Pelodictyon phaeoclathratiforme BU-1)

8e-118

52) Ppha_1245
( YP_002018133.1 )

RNA-directed DNA polymerase

NC_011060
(Pelodictyon phaeoclathratiforme BU-1)

8e-118

53) Ppha_2112
( YP_002018935.1 )

RNA-directed DNA polymerase

NC_011060
(Pelodictyon phaeoclathratiforme BU-1)

8e-118

54) RPSI07_0226
( YP_003750926.1 )

putative RNA-directed DNA polymerase

NC_014311
(Ralstonia solanacearum PSI07)

3e-117

55) NGR_b07990
( YP_002823010.1 )

reverse transcriptase/maturase

NC_012586
(Sinorhizobium fredii NGR234)

7e-117

56) Paes_0629
( YP_002015331.1 )

RNA-directed DNA polymerase

NC_011059
(Prosthecochloris aestuarii DSM 271)

8e-117

57) Theba_1603
( YP_006346510.1 )

Retron-type reverse transcriptase

NC_017934
(Mesotoga prima MesG1.Ag.4.2)

2e-116

58) Theba_1781
( YP_006346675.1 )

Retron-type reverse transcriptase

NC_017934
(Mesotoga prima MesG1.Ag.4.2)

2e-116

59) Cha6605_1363
( YP_007096072.1 )

Retron-type reverse transcriptase

NC_019697
(Chamaesiphon minutus PCC 6605)

3e-116

60) Cha6605_1826
( YP_007096472.1 )

Retron-type reverse transcriptase

NC_019697
(Chamaesiphon minutus PCC 6605)

3e-116

61) Cha6605_2100
( YP_007096716.1 )

Retron-type reverse transcriptase

NC_019697
(Chamaesiphon minutus PCC 6605)

3e-116

62) Theba_1700
( YP_006346602.1 )

Retron-type reverse transcriptase

NC_017934
(Mesotoga prima MesG1.Ag.4.2)

4e-116

63) Theba_1663
( YP_006346568.1 )

Retron-type reverse transcriptase

NC_017934
(Mesotoga prima MesG1.Ag.4.2)

5e-116

64) Theba_1767
( YP_006346665.1 )

Retron-type reverse transcriptase

NC_017934
(Mesotoga prima MesG1.Ag.4.2)

8e-116

65) Theba_2552
( YP_006347395.1 )

Retron-type reverse transcriptase

NC_017934
(Mesotoga prima MesG1.Ag.4.2)

8e-116

66) Theba_2335
( YP_006347203.1 )

Retron-type reverse transcriptase

NC_017934
(Mesotoga prima MesG1.Ag.4.2)

2e-115

67) Pden_4539
( YP_918298.1 )

RNA-directed DNA polymerase (Reverse transcriptase)

NC_008688
(Paracoccus denitrificans PD1222)

3e-115

68) Theba_2724
( YP_006347562.1 )

Retron-type reverse transcriptase

NC_017934
(Mesotoga prima MesG1.Ag.4.2)

5e-115

69) Theba_1671
( YP_006346576.1 )

Retron-type reverse transcriptase

NC_017934
(Mesotoga prima MesG1.Ag.4.2)

2e-114

70) plu1111
( NP_928428.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

3e-114

71) Smed_4903
( YP_001313619.1 )

RNA-directed DNA polymerase

NC_009620
(Sinorhizobium medicae WSM419)

2e-113

72) Smed_5513
( YP_001314199.1 )

RNA-directed DNA polymerase

NC_009621
(Sinorhizobium medicae WSM419)

2e-113

73) Smed_6095
( YP_001314668.1 )

RNA-directed DNA polymerase

NC_009621
(Sinorhizobium medicae WSM419)

2e-113

74) Smed_1223
( YP_001326908.1 )

RNA-directed DNA polymerase

NC_009636
(Sinorhizobium medicae WSM419)

2e-113

75) LPC_1850
( YP_001251128.1 )

reverse transcriptase

NC_009494
(Legionella pneumophila Corby)

7e-112

76) C770_GR4pC0123
( YP_007192462.1 )

Retron-type reverse transcriptase

NC_019848
(Sinorhizobium meliloti GR4)

2e-111

77) C770_GR4pC1032
( YP_007193322.1 )

Retron-type reverse transcriptase

NC_019848
(Sinorhizobium meliloti GR4)

2e-111

78) C770_GR4pC1183
( YP_007193469.1 )

Retron-type reverse transcriptase

NC_019848
(Sinorhizobium meliloti GR4)

2e-111

79) C770_GR4pC1231
( YP_007193515.1 )

Retron-type reverse transcriptase

NC_019848
(Sinorhizobium meliloti GR4)

2e-111

80) C770_GR4pD0592
( YP_007194308.1 )

Retron-type reverse transcriptase

NC_019849
(Sinorhizobium meliloti GR4)

2e-111

81) C770_GR4pD1533
( YP_007195234.1 )

Retron-type reverse transcriptase

NC_019849
(Sinorhizobium meliloti GR4)

2e-111

82) C770_GR4pD1537
( YP_007195236.1 )

Retron-type reverse transcriptase

NC_019849
(Sinorhizobium meliloti GR4)

2e-111

83) Paes_2104
( YP_002016759.1 )

RNA-directed DNA polymerase

NC_011059
(Prosthecochloris aestuarii DSM 271)

2e-111

84) BJ6T_78030
( YP_005612636.1 )

hypothetical protein

NC_017249
(Bradyrhizobium japonicum USDA 6)

1e-110

85) SN31241_6570
( YP_008358575.1 )

Reverse transcriptase/maturase protein

NC_021902
(Salmonella enterica USMARC-S3124.1)

9e-111

86) blr2052
( NP_768692.1 )

maturase; reverse transcriptase

NC_004463
(Bradyrhizobium japonicum USDA 110)

5e-110

87) Cvib_0153
( YP_001129678.1 )

RNA-directed DNA polymerase

NC_009337
(Chlorobium phaeovibrioides DSM 265)

6e-110

88) XNC1_1809
( YP_003712053.1 )

reverse transcriptase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

7e-110

89) Theba_1599
( YP_006346507.1 )

Retron-type reverse transcriptase

NC_017934
(Mesotoga prima MesG1.Ag.4.2)

1e-109

90) BT_2615
( NP_811528.1 )

reverse transcriptase

NC_004663
(Bacteroides thetaiotaomicron VPI-5482)

2e-109

91) Cpha266_1481
( YP_911931.1 )

RNA-directed DNA polymerase

NC_008639
(Chlorobium phaeobacteroides DSM 266)

5e-109

92) Theba_1674
( YP_006346577.1 )

Retron-type reverse transcriptase

NC_017934
(Mesotoga prima MesG1.Ag.4.2)

6e-109

93) wNo_02130
( YP_007885526.1 )

Putative reverse transcriptase

NC_021084
(Wolbachia endosymbiont of Drosophila simulans wNo)

3e-108

94) MCAN_35791
( YP_004746984.1 )

RNA-directed DNA polymerase

NC_015848
(Mycobacterium canettii CIPT 140010059)

1e-107

95) SFUL_6974
( YP_007935736.1 )

RNA-directed DNA polymerase (Reverse transcriptase)

NC_021177
(Streptomyces fulvissimus DSM 40593)

7e-107

96) Mmc1_0653
( YP_864580.1 )

RNA-directed DNA polymerase

NC_008576
(Magnetococcus marinus MC-1)

2e-106

97) Mmc1_1979
( YP_865887.1 )

RNA-directed DNA polymerase

NC_008576
(Magnetococcus marinus MC-1)

2e-106

98) Dret_0626
( YP_003197499.1 )

RNA-directed DNA polymerase

NC_013223
(Desulfohalobium retbaense DSM 5692)

4e-106

99) WPa_0169
( YP_001974985.1 )

Putative reverse transcriptase

NC_010981
(Wolbachia endosymbiont wPip)

1e-104

100) WPa_0976
( YP_001975726.1 )

Putative reverse transcriptase

NC_010981
(Wolbachia endosymbiont wPip)

1e-104

101) EC042_0232
( YP_006094565.1 )

putative reverse transcriptase-Group II intron

NC_017626
(Escherichia coli 042)

3e-104

102) ECUMN_0236
( YP_002411007.1 )

putative reverse transcriptase

NC_011751
(Escherichia coli UMN026)

3e-104

103) Cycma_3603
( YP_004775551.1 )

RNA-directed DNA polymerase

NC_015914
(Cyclobacterium marinum DSM 745)

7e-104

104) Cycma_1570
( YP_004773558.1 )

RNA-directed DNA polymerase

NC_015914
(Cyclobacterium marinum DSM 745)

1e-103

105) Cycma_3598
( YP_004775547.1 )

RNA-directed DNA polymerase

NC_015914
(Cyclobacterium marinum DSM 745)

2e-103

106) MEALZ_2163
( YP_004917441.1 )

reverse transcriptase

NC_016112
(Methylomicrobium alcaliphilum 20Z)

4e-103

107) ZPR_3312
( YP_003585824.1 )

reverse transcriptase

NC_014041
(Zunongwangia profunda SMA-87)

1e-101

108) LPV_0225
( YP_006507368.1 )

RNA-directed DNA polymerase

NC_018140
(Legionella pneumophila HL06041035)

2e-101

109) LPV_0897
( YP_006507990.1 )

reverse transcriptase

NC_018140
(Legionella pneumophila HL06041035)

2e-101

110) LPV_1236
( YP_006508296.1 )

reverse transcriptase

NC_018140
(Legionella pneumophila HL06041035)

2e-101

111) Amet_0622
( YP_001318507.1 )

RNA-directed DNA polymerase

NC_009633
(Alkaliphilus metalliredigens QYMF)

4e-100

112) P700755_001480
( YP_006867125.1 )

retron-type reverse transcriptase

NC_018721
(Psychroflexus torquis ATCC 700755)

9e-100

113) P700755_003284
( YP_006868681.1 )

retron-type reverse transcriptase

NC_018721
(Psychroflexus torquis ATCC 700755)

9e-100

114) SSON_P151
( YP_313406.1 )

putative reverse transcriptase, fragment

NC_007385
(Shigella sonnei Ss046)

2e-99

115) Sinme_6627
( YP_004557779.1 )

RNA-directed DNA polymerase

NC_015597
(Sinorhizobium meliloti AK83)

4e-99

116) P700755_003526
( YP_006868891.1 )

group 2 retron-type reverse transcriptase

NC_018721
(Psychroflexus torquis ATCC 700755)

4e-99

117) Clocl_0891
( YP_005045496.1 )

Retron-type reverse transcriptase

NC_016627
(Clostridium clariflavum DSM 19732)

1e-98

118) RTCIAT899_PB01980
( YP_007336194.1 )

reverse transcriptase/maturase

NC_020061
(Rhizobium tropici CIAT 899)

2e-98

119) P700755_002743
( YP_006868226.1 )

retron-type reverse transcriptase

NC_018721
(Psychroflexus torquis ATCC 700755)

2e-98

120) BTF1_31117
( YP_006613810.1 )

RNA-directed DNA polymerase

NC_018509
(Bacillus thuringiensis HD-789)

7e-98

121) FsymDg_0103
( YP_004581606.1 )

RNA-directed DNA polymerase

NC_015656
(Frankia sp. 4085684)

2e-96

122) FsymDg_2100
( YP_004583440.1 )

RNA-directed DNA polymerase

NC_015656
(Frankia sp. 4085684)

2e-96

123) FsymDg_2454
( YP_004583749.1 )

RNA-directed DNA polymerase

NC_015656
(Frankia sp. 4085684)

2e-96

124) FsymDg_1667
( YP_004583041.1 )

RNA-directed DNA polymerase

NC_015656
(Frankia sp. 4085684)

3e-96

125) Franean1_3413
( YP_001507721.1 )

RNA-directed DNA polymerase

NC_009921
(Frankia sp. EAN1.pec)

8e-95

126) Franean1_6736
( YP_001510976.1 )

RNA-directed DNA polymerase

NC_009921
(Frankia sp. EAN1.pec)

8e-95

127) Hprae_1164
( YP_005836469.1 )

RNA-directed DNA polymerase

NC_017455
(Halanaerobium praevalens DSM 2228)

7e-94

128) Clopa_4769
( YP_007943129.1 )

Retron-type reverse transcriptase

NC_021182
(Clostridium pasteurianum BC1)

1e-93

129) P700755_002382
( YP_006867908.1 )

retron-type reverse transcriptase

NC_018721
(Psychroflexus torquis ATCC 700755)

2e-92

130) Celal_0233
( YP_004163081.1 )

RNA-directed DNA polymerase (reverse transcriptase)

NC_014934
(Cellulophaga algicola DSM 14237)

1e-91

131) Celal_3193
( YP_004165963.1 )

RNA-directed DNA polymerase (reverse transcriptase)

NC_014934
(Cellulophaga algicola DSM 14237)

1e-91

132) Celal_3278
( YP_004166042.1 )

RNA-directed DNA polymerase (reverse transcriptase)

NC_014934
(Cellulophaga algicola DSM 14237)

1e-91

133) Celal_3195
( YP_004165965.1 )

RNA-directed DNA polymerase (reverse transcriptase)

NC_014934
(Cellulophaga algicola DSM 14237)

4e-91

134) Celal_3203
( YP_004165973.1 )

RNA-directed DNA polymerase (reverse transcriptase)

NC_014934
(Cellulophaga algicola DSM 14237)

4e-91

135) Sputcn32_0275
( YP_001181807.1 )

RNA-directed DNA polymerase

NC_009438
(Shewanella putrefaciens CN-32)

3e-90

136) CJA_3185
( YP_001983639.1 )

putative maturase

NC_010995
(Cellvibrio japonicus Ueda107)

3e-89

137) Clocl_3161
( YP_005047609.1 )

Retron-type reverse transcriptase

NC_016627
(Clostridium clariflavum DSM 19732)

3e-89

138) XNC1_4573
( YP_003714655.1 )

Reverse transcriptase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

3e-89

139) ECED1_0322
( YP_002396380.1 )

putative reverse transcriptase

NC_011745
(Escherichia coli ED1a)

2e-88

140) ECED1_4889
( YP_002400658.1 )

putative reverse transcriptase

NC_011745
(Escherichia coli ED1a)

2e-88

141) ECP_3838
( YP_671710.1 )

reverse transcriptase

NC_008253
(Escherichia coli 536)

3e-87

142) Francci3_3730
( YP_482811.1 )

RNA-directed DNA polymerase

NC_007777
(Frankia sp. CcI3)

1e-85

143) Amet_3359
( YP_001321146.1 )

RNA-directed DNA polymerase

NC_009633
(Alkaliphilus metalliredigens QYMF)

5e-84

144) EcolC_2197
( YP_001725163.1 )

RNA-directed DNA polymerase

NC_010468
(Escherichia coli ATCC 8739)

4e-83

145) Mmc1_1129
( YP_865050.1 )

RNA-directed DNA polymerase

NC_008576
(Magnetococcus marinus MC-1)

2e-82

146) Lbys_1382
( YP_003997451.1 )

RNA-directed DNA polymerase (reverse transcriptase)

NC_014655
(Leadbetterella byssophila DSM 17132)

3e-82

147) Lbys_1977
( YP_003998026.1 )

RNA-directed DNA polymerase

NC_014655
(Leadbetterella byssophila DSM 17132)

3e-82

148) Lbys_1978
( YP_003998027.1 )

RNA-directed DNA polymerase (reverse transcriptase)

NC_014655
(Leadbetterella byssophila DSM 17132)

3e-82

149) SbBS512_A0056
( YP_001883112.1 )

reverse transcriptase

NC_010660
(Shigella boydii CDC 3083-94)

6e-82

150) Marme_0629
( YP_004311758.1 )

RNA-directed DNA polymerase

NC_015276
(Marinomonas mediterranea MMB-1)

3e-80

151) ZPR_3982
( YP_003586482.1 )

RNA-directed DNA polymerase

NC_014041
(Zunongwangia profunda SMA-87)

2e-79

152) SFxv_4871
( YP_005711920.1 )

putative reverse transcriptase

NC_017319
(Shigella flexneri 2002017)

2e-79

153) SDY_P034
( YP_406035.1 )

putative reverse transcriptase

NC_007607
(Shigella dysenteriae Sd197)

3e-79

154) SACE_2315
( YP_001104541.1 )

RNA-directed DNA polymerase

NC_009142
(Saccharopolyspora erythraea NRRL 2338)

6e-79

155) CLS_19260
( YP_007849437.1 )

Retron-type reverse transcriptase

NC_021047
(Clostridium saccharolyticum K10)

2e-76

156) ZPR_1303
( YP_003583835.1 )

reverse transcriptase

NC_014041
(Zunongwangia profunda SMA-87)

4e-73

• Sequence Alignments

1) A458_08065 in NC_018028


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  685 bits (2592),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 418/422 (99%), Positives = 420/422 (99%), Gaps = 0/422 (0%)

Query  1    MSGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGS  60
            MSGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGS
Sbjct  1    MSGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGS  60

Query  61   YFPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSA  120
            YFPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSA
Sbjct  61   YFPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSA  120

Query  121  KQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFE  180
            KQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFE
Sbjct  121  KQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFE  180

Query  181  TDHGMRVRRERGTPQGGVISPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRK  240
            TD+GMRV RERGTPQGGV+SPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRK
Sbjct  181  TDDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRK  240

Query  241  QAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ  300
            QAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ
Sbjct  241  QAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ  300

Query  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWSQYYGSFYRT  360
            DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGW QYYGSFYRT
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQGWITG  420
            AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQGWITG
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQGWITG  420

Query  421  AV  422
            AV
Sbjct  421  AV  422

2) YSA_00620 in NC_017986


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  616 bits (2326),  Expect = 8e-178, Method: Compositional matrix adjust.
 Identities = 349/415 (85%), Positives = 388/415 (94%), Gaps = 0/415 (0%)

Query  1    MSGVSSNKPYNIAKRVIWEAYQQVRTNRGAAGIDDETIADFERNLPKNLYKLWNRMSSGS  60
            MSGVSS KPY+IAKR +W+AYQQVR+NRGAAGIDDETIADFER+L+KNLYKLWNRMSSGS
Sbjct  1    MSGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGS  60

Query  61   YFPPPVKAVEIPKASGGIRRLGVPTVSDRIAQTVVKLLIEPKLDALFHPDSYGYRPGRSA  120
            YFPPPVK VEIPKASGG R+LGVPTV+DR+AQTVVKLLIEP LD++FH+DSYGYRPGRSA
Sbjct  61   YFPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSA  120

Query  121  KQAIAITRERCWRYDWVVEFDIKAAFDHIDHELLMKAVRTHIKEDWILLYIERWLVAPFE  180
            KQA+AITRERCWRYDWVVEFDIKAAFD+I+H LLMKAVR HIKEDWILLYIERWLVAPFE
Sbjct  121  KQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFE  180

Query  181  AADGVRIQRERGTPQGGVISPMLMNLFMHYAFDAWMQRNSPNCPFARYADDAVVHCRSQR  240
            + DG+R+ RERGTPQGGV+SP+LMNLFMHYAFD+WMQR SPNCPFARYADDAVVHCRS++
Sbjct  181  TDDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRK  240

Query  241  QAEHVMRSIASRLAVCGLTMHPEKSKIVYCKDSNRRAGYPHVSFTFLGFTFRPRKAIGQQ  300
            QAE VMRSIASRLA CGLTMHPEKSK+VYCKDSNRRAGYPHVSFTFLGFTFRPRKA+++Q
Sbjct  241  QAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ  300

Query  301  NKLFTSFLPGVSAQALKRMRRAVREWRVSRQTHVTLAAVARLYNPVIQGWWQYYGAFYRT  360
            ++LFTSFLPG SA+ALKRMR+AVR WR++RQTHVTL  VARLYNPVIQGWWQYYG+FYRT
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  361  AMLGIFRHIDSALKRWAGRKYKILHGRKRRISKWLDTVHKAAPRLFYHWQVTEQQ  415
            AMLGIF+HID AL RWA RKYK LH RKRRIS+WLD ++   PRLF HW+VT QQ
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQ  415

3) PPS_0137 in NC_015733


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  616 bits (2326),  Expect = 8e-178, Method: Compositional matrix adjust.
 Identities = 349/415 (85%), Positives = 388/415 (94%), Gaps = 0/415 (0%)

Query  1    MSGVSSNKPYNIAKRVIWEAYQQVRTNRGAAGIDDETIADFERNLPKNLYKLWNRMSSGS  60
            MSGVSS KPY+IAKR +W+AYQQVR+NRGAAGIDDETIADFER+L+KNLYKLWNRMSSGS
Sbjct  1    MSGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGS  60

Query  61   YFPPPVKAVEIPKASGGIRRLGVPTVSDRIAQTVVKLLIEPKLDALFHPDSYGYRPGRSA  120
            YFPPPVK VEIPKASGG R+LGVPTV+DR+AQTVVKLLIEP LD++FH+DSYGYRPGRSA
Sbjct  61   YFPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSA  120

Query  121  KQAIAITRERCWRYDWVVEFDIKAAFDHIDHELLMKAVRTHIKEDWILLYIERWLVAPFE  180
            KQA+AITRERCWRYDWVVEFDIKAAFD+I+H LLMKAVR HIKEDWILLYIERWLVAPFE
Sbjct  121  KQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFE  180

Query  181  AADGVRIQRERGTPQGGVISPMLMNLFMHYAFDAWMQRNSPNCPFARYADDAVVHCRSQR  240
            + DG+R+ RERGTPQGGV+SP+LMNLFMHYAFD+WMQR SPNCPFARYADDAVVHCRS++
Sbjct  181  TDDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRK  240

Query  241  QAEHVMRSIASRLAVCGLTMHPEKSKIVYCKDSNRRAGYPHVSFTFLGFTFRPRKAIGQQ  300
            QAE VMRSIASRLA CGLTMHPEKSK+VYCKDSNRRAGYPHVSFTFLGFTFRPRKA+++Q
Sbjct  241  QAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ  300

Query  301  NKLFTSFLPGVSAQALKRMRRAVREWRVSRQTHVTLAAVARLYNPVIQGWWQYYGAFYRT  360
            ++LFTSFLPG SA+ALKRMR+AVR WR++RQTHVTL  VARLYNPVIQGWWQYYG+FYRT
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  361  AMLGIFRHIDSALKRWAGRKYKILHGRKRRISKWLDTVHKAAPRLFYHWQVTEQQ  415
            AMLGIF+HID AL RWA RKYK LH RKRRIS+WLD ++   PRLF HW+VT QQ
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQ  415

4) PPS_3362 in NC_015733


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  616 bits (2326),  Expect = 8e-178, Method: Compositional matrix adjust.
 Identities = 349/415 (85%), Positives = 388/415 (94%), Gaps = 0/415 (0%)

Query  1    MSGVSSNKPYNIAKRVIWEAYQQVRTNRGAAGIDDETIADFERNLPKNLYKLWNRMSSGS  60
            MSGVSS KPY+IAKR +W+AYQQVR+NRGAAGIDDETIADFER+L+KNLYKLWNRMSSGS
Sbjct  1    MSGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGS  60

Query  61   YFPPPVKAVEIPKASGGIRRLGVPTVSDRIAQTVVKLLIEPKLDALFHPDSYGYRPGRSA  120
            YFPPPVK VEIPKASGG R+LGVPTV+DR+AQTVVKLLIEP LD++FH+DSYGYRPGRSA
Sbjct  61   YFPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSA  120

Query  121  KQAIAITRERCWRYDWVVEFDIKAAFDHIDHELLMKAVRTHIKEDWILLYIERWLVAPFE  180
            KQA+AITRERCWRYDWVVEFDIKAAFD+I+H LLMKAVR HIKEDWILLYIERWLVAPFE
Sbjct  121  KQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFE  180

Query  181  AADGVRIQRERGTPQGGVISPMLMNLFMHYAFDAWMQRNSPNCPFARYADDAVVHCRSQR  240
            + DG+R+ RERGTPQGGV+SP+LMNLFMHYAFD+WMQR SPNCPFARYADDAVVHCRS++
Sbjct  181  TDDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRK  240

Query  241  QAEHVMRSIASRLAVCGLTMHPEKSKIVYCKDSNRRAGYPHVSFTFLGFTFRPRKAIGQQ  300
            QAE VMRSIASRLA CGLTMHPEKSK+VYCKDSNRRAGYPHVSFTFLGFTFRPRKA+++Q
Sbjct  241  QAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ  300

Query  301  NKLFTSFLPGVSAQALKRMRRAVREWRVSRQTHVTLAAVARLYNPVIQGWWQYYGAFYRT  360
            ++LFTSFLPG SA+ALKRMR+AVR WR++RQTHVTL  VARLYNPVIQGWWQYYG+FYRT
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  361  AMLGIFRHIDSALKRWAGRKYKILHGRKRRISKWLDTVHKAAPRLFYHWQVTEQQ  415
            AMLGIF+HID AL RWA RKYK LH RKRRIS+WLD ++   PRLF HW+VT QQ
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQ  415

5) PPS_0784 in NC_015733


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  588 bits (2222),  Expect = 1e-169, Method: Compositional matrix adjust.
 Identities = 336/393 (86%), Positives = 372/393 (95%), Gaps = 0/393 (0%)

Query  1    MSGVSSNKPYNIAKRVIWEAYQQVRTNRGAAGIDDETIADFERNLPKNLYKLWNRMSSGS  60
            MSGVSS KPY+IAKR +W+AYQQVR+NRGAAGIDDETIADFER+L+KNLYKLWNRMSSGS
Sbjct  1    MSGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGS  60

Query  61   YFPPPVKAVEIPKASGGIRRLGVPTVSDRIAQTVVKLLIEPKLDALFHPDSYGYRPGRSA  120
            YFPPPVK VEIPKASGG R+LGVPTV+DR+AQTVVKLLIEP LD++FH+DSYGYRPGRSA
Sbjct  61   YFPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSA  120

Query  121  KQAIAITRERCWRYDWVVEFDIKAAFDHIDHELLMKAVRTHIKEDWILLYIERWLVAPFE  180
            KQA+AITRERCWRYDWVVEFDIKAAFD+I+H LLMKAVR HIKEDWILLYIERWLVAPFE
Sbjct  121  KQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFE  180

Query  181  AADGVRIQRERGTPQGGVISPMLMNLFMHYAFDAWMQRNSPNCPFARYADDAVVHCRSQR  240
            + DG+R+ RERGTPQGGV+SP+LMNLFMHYAFD+WMQR SPNCPFARYADDAVVHCRS++
Sbjct  181  TDDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRK  240

Query  241  QAEHVMRSIASRLAVCGLTMHPEKSKIVYCKDSNRRAGYPHVSFTFLGFTFRPRKAIGQQ  300
            QAE VMRSIASRLA CGLTMHPEKSK+VYCKDSNRRAGYPHVSFTFLGFTFRPRKA+++Q
Sbjct  241  QAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ  300

Query  301  NKLFTSFLPGVSAQALKRMRRAVREWRVSRQTHVTLAAVARLYNPVIQGWWQYYGAFYRT  360
            ++LFTSFLPG SA+ALKRMR+AVR WR++RQTHVTL  VARLYNPVIQGWWQYYG+FYRT
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  361  AMLGIFRHIDSALKRWAGRKYKILHGRKRRISN  393
            AMLGIF+HID AL RWA RKYK LH RKRRIS+
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQ  393

6) PST_1704 in NC_009434


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  519 bits (1958),  Expect = 8e-149, Method: Compositional matrix adjust.
 Identities = 299/342 (88%), Positives = 323/342 (95%), Gaps = 0/342 (0%)

Query  1    MDYPTVSDRVAQTVVKLLIEPELDSIFHPDSYGYRPGRSAKQAVAITRERCWRYDWVVEF  60
            ++ PTV+DRVAQTVVKLLIEPELDSIFH+DSYGYRPGRSAKQAVAITRERCWRYDWVVEF
Sbjct  81   LGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAITRERCWRYDWVVEF  140

Query  61   DIKAAFDQIDHGLLMKAVRAHIKEDWILLYIERWLVAPFETKDGVCVPRDRGTPQGGVVS  120
            DIKAAFDQI+HGLLMKAVR HIKEDWILLYIERWLVAPFET DG+ VPR+RGTPQGGV+S
Sbjct  141  DIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRVPRERGTPQGGVLS  200

Query  121  PILMNLFMHYAFDMWMQRTSANCPFARYADDAVVHCRSRKQAEYMMRTIASRLADCGLTM  180
            P+LMNLFMHYAFD WMQRTS+NCPFARYADDAVVHCRSRKQAEY+MR+IASRLA CGLTM
Sbjct  201  PLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMRSIASRLAACGLTM  260

Query  181  HPEKSKIVYCKDSNRTEQHLHVSFTFLGFMFRPRKALSKEGRLFTSFLPGASEGALKRMR  240
            HPEKSK+VYCKDSNR     HVSFTFLGF FRPRKALSK+++LFTSFLPGAS +ALKRMR
Sbjct  261  HPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSFLPGASADALKRMR  320

Query  241  QTVRRWRLNSQTHVTLADVARLYNPVIQGWWHYYGSFYRTSMLGIFQHIDRALERWARRK  300
            Q+VRRWRLN QTHVTL DVARLYNPVIQGWW+YYGSFYRT+MLGIFQHIDRALERWARRK
Sbjct  321  QAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQHIDRALERWARRK  380

Query  301  YKALHRRKRRGSRWVEKMRMAAPRLFHHWRVAGQQGWITGAV  342
            YKALHRRKRR S+W++KMR   PRLFHHWRV+GQQGWITGAV
Sbjct  381  YKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQGWITGAV  422

7) MYA_4867 in NC_017921


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  481 bits (1813),  Expect = 2e-137, Method: Compositional matrix adjust.
 Identities = 280/321 (88%), Positives = 301/321 (94%), Gaps = 0/321 (0%)

Query  2    GLAGIDEETIAEFEQNLSKNLYKLWNRMSSGSYFPPPVKQVEIPKASGGTRKLGVPTVAD  61
            G AGID+ETIA+FE++LSKNLYKLWNRMSSGSYFPPPVKQVEIPKASGGTRKLGVPTV+D
Sbjct  29   GAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVKQVEIPKASGGTRKLGVPTVGD  88

Query  62   RVAQTAVKLVIEPSLDAIFHPDSYGYRPGRSAKQAVAITRERCWRYDWVVEFDIKAAFDQ  121
            RVAQT VKL+IEP LD+IFH+DSYGYRPGRSAKQAVAITRERCWRYDWVVEFDIKAAFDQ
Sbjct  89   RVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAITRERCWRYDWVVEFDIKAAFDQ  148

Query  122  IDHGLLMKAVRTHIKEDWILLYTERWLVAPFETADGARVPRTRGTPQGGVVSPILMNLFM  181
            I+HGLLMKAVR HIKEDWILLY ERWLVAPFET DG RVPR RGTPQGGV+SP+LMNLFM
Sbjct  149  INHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRVPRERGTPQGGVLSPLLMNLFM  208

Query  182  HYTFDRWMQRTSPNCPFARYADDAVVHCHSRKQAEYVMRSIAARLAACGLTMHPEKSKIV  241
            HY+FD WMQRTSPNCPFARYADDAVVHC+SRKQAEYVMRSIA+RLAACGLTMHPEKSK+V
Sbjct  209  HYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMRSIASRLAACGLTMHPEKSKVV  268

Query  242  YCRGSNRSERHSQASFTFLGFTFRPRKAYSTQGGIFTSFLPGASEDALKRMRQAVRGWRL  301
            YC++SNR    ++ SFTFLGFTFRPRKA S Q+ +FTSFLPGAS DALKRMRQAVR WRL
Sbjct  269  YCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSFLPGASADALKRMRQAVRRWRL  328

Query  302  NRQTHVTLADVARLYNPVIQG  322
            NRQTHVTL DVARLYNPVIQG
Sbjct  329  NRQTHVTLVDVARLYNPVIQG  349

8) Clopa_4922 in NC_021183


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  446 bits (1679),  Expect = 1e-126, Method: Compositional matrix adjust.
 Identities = 222/409 (55%), Positives = 327/409 (80%), Gaps = 0/409 (0%)

Query  1    MEKTKPFNITKQSVWEAYKRVKANKGSAGVDKESIEDFEKNLKNNLYKIWNRMSSGTYFP  60
            +  +KP++I+K++VW+AY++V+AN+G+AG+D E+I DFE++L +NLYK+WNRMSSG+YFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PPVRAVEIPKKNGGIRILGVPTVSDRIAQMVVKIHFEPKVEPIFHPDSYGYRPMKSAIDA  120
            PPV+ VEIPK +GG R LGVPTV+DR+AQ VVK+ +EP +++IFH+DSYGYRP +SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  IAIVRKRCWRYNWVLEFDIKGLFDNINHELLMKAVRKHTNCTWILLYIERWLTAPLQDKD  180
            +AI R RCWRY+WV+EFDIK+ FD+INH LLMKAVR H +  WILLYIERWL AP++  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GSIITRTSGTPQGSVISPVLANLFLHYTFDKWMEINFPSNPWARYADDAVAHCKTKYEAD  240
            G  + R  GTPQG+V+SP+L NLF+HY+FD WM+   P+ P ARYADDAV HC+++ +A+
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  NLLIKLNQRFKQCALELHPEKTQIVYCKDDDRRGNYPITKFDFLGYTFRPRRSKNKYGKY  300
             ++  +  R+  C+L +HPEK+++VYCKD +RR+ YP   F FLG+TFRPR++ +K ++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FISFLPAASNKACKAMRQVIRNWRIHLKPDKEIIDIAIMFNPVIRGWINYYGCFYKSALY  360
            F SFLP+AS  A K MRQ +R WR++ + +  ++D+A ++NPVI+GW +YYG FY++A+ 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  361  TVLRHMNKALVHWARRKYKKLQRHRTRAERWMGRIAKQLPKLFAHWQMG  409
             +++H+++AL +WARRKYK L+R++ R  +W++++   +P+LF HW++ 
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

9) Dtox_4019 in NC_013216


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  442 bits (1663),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 228/409 (56%), Positives = 327/409 (80%), Gaps = 0/409 (0%)

Query  1    MNKTKPYEISKHVVLEAFQRVKANKGAAGIDDESLEAFEANLKNNLYKIWNRMSSGSYFP  60
            ++ +KPY+I+K+ V +A+Q+V+AN+GAAGIDDE++  FE +L +NLYK+WNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PPVKAVEIPKKTGGKRILGVPTVADRVAQMVAKIYFEPLVEPHFHPDSYGYRPGKSAVDA  120
            PPVK VEIPK +GG R LGVPTV+DRVAQ V K+ +EP +++ FH+DSYGYRPG+SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  LAVTRQRCWKYDWVLEFDIKGLFDNINHDLLMKAVRKHTDNPWVILYIQRWLKAPFQMPD  180
            +A+TR+RCW+YDWV+EFDIK+ FD+INH+LLMKAVR H  + W++LYI+RWL APF+  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GMLKERTKGTPQGGVISPVLANLFLHYAYDVWMARNHPDKPFARYADDSVAHCRSKKDAE  240
            GM   R +GTPQGGV+SP+L NLF+HYA+D WM R  P+ PFARYADD+V HCRS+K+AE
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  KLHDSLKERFAECELELHPDKTRIVYCKDDDRRGEHQETKFDFLGYTFRPRRSKNKYGKH  300
             +  S+  R+A C L +HP+K+++VYCKD +RR+   +  F FLG+TFRPR++ +K ++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FVNFTPAASNKAKKAMRQTIHDWRVHLKPDKALEDLSRMFNPVIRGWVNYYGRFYKSELY  360
            F +F P+AS  A K MRQ+++ WR++ + + +L D++R++NPVI+GW +YYG FY++ + 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  361  SVLRHMDRALVRWVQRKFKKFATHKRRATYWLGKIARREPKLFIHWQMG  409
            ++++H+DRAL RW +RK+K +  +KRR + WL+K+    P+LF HW++ 
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

10) Sulac_3603 in NC_016888


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  437 bits (1645),  Expect = 5e-124, Method: Compositional matrix adjust.
 Identities = 238/406 (59%), Positives = 318/406 (79%), Gaps = 0/406 (0%)

Query  1    MDKPKPYAISKWLVYEAYQRVKANHGAAGVDGESLRRFEEDLKNNLYKIWNRMSSGSYFP  60
            +  +KPY I+K+ V +AYQ+V+AN+GAAG+D+E++  FE DL +NLYK+WNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PPVKAVEIPKKSGGVRILGVPTVADRIAQMVVKLTFEPLVEPIFHPDSYGYRPGRSAHDA  120
            PPVK VEIPK SGG R LGVPTV+DR+AQ VVKL +EP +++IFH+DSYGYRPGRSA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  LAQTRQRCWRYDWVLEFDIKGLFDNIPHDLLMKAVRQHTDNPWGLLYIERWLVAPLQRAD  180
            +A TR+RCWRYDWV+EFDIK+ FD+I H+LLMKAVR H  + W LLYIERWLVAP++  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GSQEPRTCGTPQGSVISPVLANLFLHYAFDVWMSRRHADKPFERYADDAVVHCRSYALAA  240
            G + PR  GTPQG+V+SP+L NLF+HYAFD WM R  ++ PF RYADDAVVHCRS   A 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  ALKEDLARRLAGCGLEWHPTKTRIVYCQDDDRRDTYPETSFDFLGYTFRPRRSKNRHGKY  300
             +   +A RLA+CGL  HP K+++VYC+D +RR  YP+ SF FLG+TFRPR++ +++++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FINFTPAGSRTALTAMRQTIHGWRLHLQVHRNLSELARQYNPVIRGWLQYYGRFYPSALY  360
            F +F P++S  AL  MRQ+++ WRL+ Q H  L ++AR YNPVI+GW QYYG FY +A+ 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  361  PLLRHLNRVLVRWATRKFKRLEHRQRRAEHWLGGVAQRDTQLFSHW  406
             +++H++R L RWA RK+K L++R+RR  +WL+ +     +LF HW
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

11) TPY_2264 in NC_015757


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  437 bits (1645),  Expect = 5e-124, Method: Compositional matrix adjust.
 Identities = 238/406 (59%), Positives = 318/406 (79%), Gaps = 0/406 (0%)

Query  1    MDKPKPYAISKWLVYEAYQRVKANHGAAGVDGESLRRFEEDLKNNLYKIWNRMSSGSYFP  60
            +  +KPY I+K+ V +AYQ+V+AN+GAAG+D+E++  FE DL +NLYK+WNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PPVKAVEIPKKSGGVRILGVPTVADRIAQMVVKLTFEPLVEPIFHPDSYGYRPGRSAHDA  120
            PPVK VEIPK SGG R LGVPTV+DR+AQ VVKL +EP +++IFH+DSYGYRPGRSA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  LAQTRQRCWRYDWVLEFDIKGLFDNIPHDLLMKAVRQHTDNPWGLLYIERWLVAPLQRAD  180
            +A TR+RCWRYDWV+EFDIK+ FD+I H+LLMKAVR H  + W LLYIERWLVAP++  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GSQEPRTCGTPQGSVISPVLANLFLHYAFDVWMSRRHADKPFERYADDAVVHCRSYALAA  240
            G + PR  GTPQG+V+SP+L NLF+HYAFD WM R  ++ PF RYADDAVVHCRS   A 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  ALKEDLARRLAGCGLEWHPTKTRIVYCQDDDRRDTYPETSFDFLGYTFRPRRSKNRHGKY  300
             +   +A RLA+CGL  HP K+++VYC+D +RR  YP+ SF FLG+TFRPR++ +++++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FINFTPAGSRTALTAMRQTIHGWRLHLQVHRNLSELARQYNPVIRGWLQYYGRFYPSALY  360
            F +F P++S  AL  MRQ+++ WRL+ Q H  L ++AR YNPVI+GW QYYG FY +A+ 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  361  PLLRHLNRVLVRWATRKFKRLEHRQRRAEHWLGGVAQRDTQLFSHW  406
             +++H++R L RWA RK+K L++R+RR  +WL+ +     +LF HW
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

12) MA2797 in NC_003552


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  434 bits (1634),  Expect = 4e-123, Method: Compositional matrix adjust.
 Identities = 223/409 (55%), Positives = 317/409 (78%), Gaps = 0/409 (0%)

Query  1    MDETKPYEISKDIVQEAFQRVKANKGAAGVDDENIAAFESDLTNNLYKIWNRMSSGCYFP  60
            +  +KPY+I+K  V +A+Q+V+AN+GAAG+DDE IA FE DL++NLYK+WNRMSSG YFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PSVKAIEIPKKSGGTRILGIPTVLDRVAQMVTKIYLEPQLEPLFHPDSYGYRPGKSAADA  120
            P+VK +EIPK SGGTR LG+PTV DRVAQ V K+ +EP+L+++FH+DSYGYRPG+SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  LAATRKRCWRYNWLLEFDIKGLFDNINHDLLMKQVSMHTDKPWIILYIQRWLKAPFQMAD  180
            +A TR RCWRY+W++EFDIK+ FD+INH+LLMK V +H    WI+LYI+RWL APF+  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GTVNERTKGTPQGGVVSPLLANLFLHYAFDQWMDSHHRYNPFERYADDSVIHCRSKKDAD  240
            G    R +GTPQGGV+SPLL NLF+HYAFD WM+      PF RYADD+V+HCRS+K+A+
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  RLRIKLEKRLSEFGLELHPTKTRIVYCKDDDRQEDYPETKFDFLGYTFRPRRSKNKYGKH  300
             +   +  RL+  GL +HP K+++VYCKD +R+ +YP+  F FLG+TFRPR++ +K ++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FINFTPAVSNTAKKSMQQEIHNWRMHLKPDLTLEDLSHMYNPIVRGWVNYYGLFYKSELY  360
            F +F P+ S  A K M+Q ++ WR++ + ++TL D++++YNP+++GW +YYG FY++ + 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  361  CVLKHMNRALTRWALRKYKKLSGHKRRARYWLGKIARRDPKLFVHWQMG  409
             +++H++RAL RWA RKYK L  +KRR   WL+K+    P+LF HW++ 
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

13) MA4183 in NC_003552


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  434 bits (1634),  Expect = 4e-123, Method: Compositional matrix adjust.
 Identities = 223/409 (55%), Positives = 317/409 (78%), Gaps = 0/409 (0%)

Query  1    MDETKPYEISKDIVQEAFQRVKANKGAAGVDDENIAAFESDLTNNLYKIWNRMSSGCYFP  60
            +  +KPY+I+K  V +A+Q+V+AN+GAAG+DDE IA FE DL++NLYK+WNRMSSG YFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PSVKAIEIPKKSGGTRILGIPTVLDRVAQMVTKIYLEPQLEPLFHPDSYGYRPGKSAADA  120
            P+VK +EIPK SGGTR LG+PTV DRVAQ V K+ +EP+L+++FH+DSYGYRPG+SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  LAATRKRCWRYNWLLEFDIKGLFDNINHDLLMKQVSMHTDKPWIILYIQRWLKAPFQMAD  180
            +A TR RCWRY+W++EFDIK+ FD+INH+LLMK V +H    WI+LYI+RWL APF+  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GTVNERTKGTPQGGVVSPLLANLFLHYAFDQWMDSHHRYNPFERYADDSVIHCRSKKDAD  240
            G    R +GTPQGGV+SPLL NLF+HYAFD WM+      PF RYADD+V+HCRS+K+A+
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  RLRIKLEKRLSEFGLELHPTKTRIVYCKDDDRQEDYPETKFDFLGYTFRPRRSKNKYGKH  300
             +   +  RL+  GL +HP K+++VYCKD +R+ +YP+  F FLG+TFRPR++ +K ++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FINFTPAVSNTAKKSMQQEIHNWRMHLKPDLTLEDLSHMYNPIVRGWVNYYGLFYKSELY  360
            F +F P+ S  A K M+Q ++ WR++ + ++TL D++++YNP+++GW +YYG FY++ + 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  361  CVLKHMNRALTRWALRKYKKLSGHKRRARYWLGKIARRDPKLFVHWQMG  409
             +++H++RAL RWA RKYK L  +KRR   WL+K+    P+LF HW++ 
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

14) MA4626 in NC_003552


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  428 bits (1610),  Expect = 3e-121, Method: Compositional matrix adjust.
 Identities = 222/409 (55%), Positives = 316/409 (78%), Gaps = 0/409 (0%)

Query  1    MDETKPYEISKDIVQEAFQRVKANKGAAGVDDENIAAFESDLTNNLYKIWNRMSSGCYFP  60
            +  +KPY+I+K  V +A+Q+V+AN+GAAG+DDE IA FE DL++NLYK+WNRMSSG YFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PSVKAIEIPKKSGGTRILGIPTVLDRVAQMVTKIYLEPQLEPLFHPDSYGYRPGKSAADA  120
            P+VK +EIPK SGGTR LG+PTV DRVAQ V K+ +EP+L+++FH+DSYGYRPG+SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  LAATRKRCWRYNWLLEFDIKGLFDNINHDLLMKQVSMHTDKPWIILYIQRWLKAPFQMAD  180
            +A TR RCWRY+W++EFDIK+ FD+INH+LLMK V +H    WI+LYI+RWL APF+  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GTVNERTKGTPQGGVVSPLLANLFLHYAFDQWMDSHHRYNPFERYADDSVIHCRSREEAE  240
            G    R +GTPQGGV+SPLL NLF+HYAFD WM+      PF RYADD+V+HCRSR +AE
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  RLWIELDKRLSEFGLELHPSKTRIVYCKDDDRQGDYPETKFDFLGYTFRPRRSKNKYGKH  300
             +   +  RL+  GL +HP K+++VYCKD +R+++YP+  F FLG+TFRPR++ +K ++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FINFTPAVSNTAKKSMQQEIHDWRMHLKPDKTLEDLSHMFNPILRGWVNYYGLFYKSELY  360
            F +F P+ S  A K M+Q ++ WR++ + + TL D+++++NP+++GW +YYG FY++ + 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  361  CVLKHMNRVLTRWAQRKYKKLAGHKRRARYWLGKIARRDPKLFVHWQMG  409
             +++H++R L RWA+RKYK L  +KRR   WL+K+    P+LF HW++ 
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

15) B1NLA3E_20205 in NC_021171


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  420 bits (1580),  Expect = 8e-119, Method: Compositional matrix adjust.
 Identities = 209/409 (52%), Positives = 314/409 (77%), Gaps = 1/409 (0%)

Query  1    MDKTKPYEISKKIVYEAFIRVKANKGSAGIDEQSIEEFERNLKDNLYKVWNRMSSGSYFP  60
            +  +KPY+I+K+ V +A+ +V+AN+G+AGID+++I +FER+L  NLYK+WNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PAVKAVEIQKKAGGTRTLGIPTVADRIAQMTVKLYFEPSVEPFFYEDSYGYRPKKSAIQA  120
            P+VK VEI K +GGTR LG+PTV+DR+AQ  VKL +EP ++++F  DSYGYRP +SA QA
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  IETTRKRCWKYNWILEFDIKGLFDNIDHEFLMRAVDKHTDVEWVKLYIKRWLTAPFQTKE  180
            +  TR RCW+Y+W++EFDIK+ FD+I+H +LM+AV  H   +W+ LYI RWL APF+T +
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GIK-ERTSGTPQGGVISPVLANLFLHYAFDKWMAINHPSKPFARYADDAVIHCKTEEEAK  239
            G++  R  GTPQGGV+SP+L NLF+HYAFD WM    P+ PFARYADDAV+HC++  +A 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  240  KVLKSLSKRMNECKLELHPSKTKIVYCKDADRKEDHENIAFDFLGYTFRPRLSKNRWGKH  299
             V++S++ R+  C L +HP K+K+VYCKD++R+ +  +++F FLG+TFRPR + ++ ++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  300  FVNFTPAisnkskksiqqkVRDWKLQLKADKELIDLSNMFNSVIQGWINYYGKFYKSEMY  359
            F +F P+ S  + K ++Q VR W+L+ +++  L+D++ ++N+VIQGW +YYG FY++ M 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  360  SSLRHINKALIMWARRKYKKLSRHKKRAEHFLGRISKQNPKLFKHWDIG  408
            + ++HI++AL  WARRKYK L R+K+R  + L+++    P+LF HW + 
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

16) SM_b21045 in NC_003078


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1575),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALKVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

17) SM2011_b21045 in NC_020560


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1575),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALKVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

18) SM11_chr3058 in NC_017325


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1575),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALKVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

19) SM11_chr3620 in NC_017325


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1575),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALKVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

20) SM11_pD0883 in NC_017326


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1575),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALKVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

21) SM11_pC0024 in NC_017327


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1575),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALKVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

22) SM11_pC0528 in NC_017327


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1575),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALKVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

23) SM11_pC0707 in NC_017327


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1575),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALKVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

24) Sinac_3457 in NC_019892


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 220/410 (54%), Positives = 319/410 (78%), Gaps = 1/410 (0%)

Query  1    MPEAKPYAISKQVVYEAYLKVKANHGAAGVDGQSIEAFETDLKGNLYKIWNRMSSGSYFP  60
            ++ AKPY I+K+ V +AY +V+AN+GAAG+D+++I  FE DL  NLYK+WNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PPVRLVEIPKADGGSRPLGIPTVGDRVAQMVVKMHLEPLVEPHFHPDSYGYRPGRSALDA  120
            PPV+ VEIPKA GG+R LG+PTVGDRVAQ VVK+ +EP +++ FH+DSYGYRPGRSA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VAAARERCWRSDWVIDLDIKGFFDNLDHELVMKAVCHHVNEPWVLLYIERWLKAPVQKQD  180
            VA +RERCWR DWV+++DIK+ FD+++H L+MKAV  H++E W+LLYIERWL AP + +D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GRREERTKGSPQGSIVSPLLANLFMHYAFDLWMARSFPDIHFARYADDVIIHAKSRAQAE  240
            G R  R +G+PQG+++SPLL NLFMHYAFD WM R+ P+  FARYADD ++H +SR QAE
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  HVLEAVRARLKECRLELHPEKTKIVYCQDDDRRGQHEHIKFDFLGYTFRPRRAKNRWGKF  300
             V+ ++ +RL  C L +HPEK+K+VYC+D +RR+   H+ F FLG+TFRPR+A ++ +++
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FVSFIPAISHKAANAIRETIRDWRLAAIRNNQSLEEIAGLVNPSVRGWVNYYGRFYRSAL  360
            F SF+P+ S  A + +R+++R WRL   + + +L ++A L NP ++GW +YYG FYR+A+
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNR-QTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  361  TPVLRHLERVLVKWAQRKYKRLRRHSINAAHWLGQVARRDPNLLVLWQIG  410
              +++H++R L +WA+RKYK L+R+    ++WL+++    P L+  W++ 
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

25) Sinac_5800 in NC_019892


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 220/410 (54%), Positives = 319/410 (78%), Gaps = 1/410 (0%)

Query  1    MPEAKPYAISKQVVYEAYLKVKANHGAAGVDGQSIEAFETDLKGNLYKIWNRMSSGSYFP  60
            ++ AKPY I+K+ V +AY +V+AN+GAAG+D+++I  FE DL  NLYK+WNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PPVRLVEIPKADGGSRPLGIPTVGDRVAQMVVKMHLEPLVEPHFHPDSYGYRPGRSALDA  120
            PPV+ VEIPKA GG+R LG+PTVGDRVAQ VVK+ +EP +++ FH+DSYGYRPGRSA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VAAARERCWRSDWVIDLDIKGFFDNLDHELVMKAVCHHVNEPWVLLYIERWLKAPVQKQD  180
            VA +RERCWR DWV+++DIK+ FD+++H L+MKAV  H++E W+LLYIERWL AP + +D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GRREERTKGSPQGSIVSPLLANLFMHYAFDLWMARSFPDIHFARYADDVIIHAKSRAQAE  240
            G R  R +G+PQG+++SPLL NLFMHYAFD WM R+ P+  FARYADD ++H +SR QAE
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  HVLEAVRARLKECRLELHPEKTKIVYCQDDDRRGQHEHIKFDFLGYTFRPRRAKNRWGKF  300
             V+ ++ +RL  C L +HPEK+K+VYC+D +RR+   H+ F FLG+TFRPR+A ++ +++
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FVSFIPAISHKAANAIRETIRDWRLAAIRNNQSLEEIAGLVNPSVRGWVNYYGRFYRSAL  360
            F SF+P+ S  A + +R+++R WRL   + + +L ++A L NP ++GW +YYG FYR+A+
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNR-QTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  361  TPVLRHLERVLVKWAQRKYKRLRRHSINAAHWLGQVARRDPNLLVLWQIG  410
              +++H++R L +WA+RKYK L+R+    ++WL+++    P L+  W++ 
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

26) Sinac_6313 in NC_019892


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 220/410 (54%), Positives = 319/410 (78%), Gaps = 1/410 (0%)

Query  1    MPEAKPYAISKQVVYEAYLKVKANHGAAGVDGQSIEAFETDLKGNLYKIWNRMSSGSYFP  60
            ++ AKPY I+K+ V +AY +V+AN+GAAG+D+++I  FE DL  NLYK+WNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PPVRLVEIPKADGGSRPLGIPTVGDRVAQMVVKMHLEPLVEPHFHPDSYGYRPGRSALDA  120
            PPV+ VEIPKA GG+R LG+PTVGDRVAQ VVK+ +EP +++ FH+DSYGYRPGRSA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VAAARERCWRSDWVIDLDIKGFFDNLDHELVMKAVCHHVNEPWVLLYIERWLKAPVQKQD  180
            VA +RERCWR DWV+++DIK+ FD+++H L+MKAV  H++E W+LLYIERWL AP + +D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GRREERTKGSPQGSIVSPLLANLFMHYAFDLWMARSFPDIHFARYADDVIIHAKSRAQAE  240
            G R  R +G+PQG+++SPLL NLFMHYAFD WM R+ P+  FARYADD ++H +SR QAE
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  HVLEAVRARLKECRLELHPEKTKIVYCQDDDRRGQHEHIKFDFLGYTFRPRRAKNRWGKF  300
             V+ ++ +RL  C L +HPEK+K+VYC+D +RR+   H+ F FLG+TFRPR+A ++ +++
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FVSFIPAISHKAANAIRETIRDWRLAAIRNNQSLEEIAGLVNPSVRGWVNYYGRFYRSAL  360
            F SF+P+ S  A + +R+++R WRL   + + +L ++A L NP ++GW +YYG FYR+A+
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNR-QTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  361  TPVLRHLERVLVKWAQRKYKRLRRHSINAAHWLGQVARRDPNLLVLWQIG  410
              +++H++R L +WA+RKYK L+R+    ++WL+++    P L+  W++ 
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

27) Sinac_6701 in NC_019892


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 220/410 (54%), Positives = 319/410 (78%), Gaps = 1/410 (0%)

Query  1    MPEAKPYAISKQVVYEAYLKVKANHGAAGVDGQSIEAFETDLKGNLYKIWNRMSSGSYFP  60
            ++ AKPY I+K+ V +AY +V+AN+GAAG+D+++I  FE DL  NLYK+WNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PPVRLVEIPKADGGSRPLGIPTVGDRVAQMVVKMHLEPLVEPHFHPDSYGYRPGRSALDA  120
            PPV+ VEIPKA GG+R LG+PTVGDRVAQ VVK+ +EP +++ FH+DSYGYRPGRSA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VAAARERCWRSDWVIDLDIKGFFDNLDHELVMKAVCHHVNEPWVLLYIERWLKAPVQKQD  180
            VA +RERCWR DWV+++DIK+ FD+++H L+MKAV  H++E W+LLYIERWL AP + +D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GRREERTKGSPQGSIVSPLLANLFMHYAFDLWMARSFPDIHFARYADDVIIHAKSRAQAE  240
            G R  R +G+PQG+++SPLL NLFMHYAFD WM R+ P+  FARYADD ++H +SR QAE
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  HVLEAVRARLKECRLELHPEKTKIVYCQDDDRRGQHEHIKFDFLGYTFRPRRAKNRWGKF  300
             V+ ++ +RL  C L +HPEK+K+VYC+D +RR+   H+ F FLG+TFRPR+A ++ +++
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FVSFIPAISHKAANAIRETIRDWRLAAIRNNQSLEEIAGLVNPSVRGWVNYYGRFYRSAL  360
            F SF+P+ S  A + +R+++R WRL   + + +L ++A L NP ++GW +YYG FYR+A+
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNR-QTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  361  TPVLRHLERVLVKWAQRKYKRLRRHSINAAHWLGQVARRDPNLLVLWQIG  410
              +++H++R L +WA+RKYK L+R+    ++WL+++    P L+  W++ 
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

28) Sinac_6831 in NC_019892


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 220/410 (54%), Positives = 319/410 (78%), Gaps = 1/410 (0%)

Query  1    MPEAKPYAISKQVVYEAYLKVKANHGAAGVDGQSIEAFETDLKGNLYKIWNRMSSGSYFP  60
            ++ AKPY I+K+ V +AY +V+AN+GAAG+D+++I  FE DL  NLYK+WNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PPVRLVEIPKADGGSRPLGIPTVGDRVAQMVVKMHLEPLVEPHFHPDSYGYRPGRSALDA  120
            PPV+ VEIPKA GG+R LG+PTVGDRVAQ VVK+ +EP +++ FH+DSYGYRPGRSA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VAAARERCWRSDWVIDLDIKGFFDNLDHELVMKAVCHHVNEPWVLLYIERWLKAPVQKQD  180
            VA +RERCWR DWV+++DIK+ FD+++H L+MKAV  H++E W+LLYIERWL AP + +D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GRREERTKGSPQGSIVSPLLANLFMHYAFDLWMARSFPDIHFARYADDVIIHAKSRAQAE  240
            G R  R +G+PQG+++SPLL NLFMHYAFD WM R+ P+  FARYADD ++H +SR QAE
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  HVLEAVRARLKECRLELHPEKTKIVYCQDDDRRGQHEHIKFDFLGYTFRPRRAKNRWGKF  300
             V+ ++ +RL  C L +HPEK+K+VYC+D +RR+   H+ F FLG+TFRPR+A ++ +++
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FVSFIPAISHKAANAIRETIRDWRLAAIRNNQSLEEIAGLVNPSVRGWVNYYGRFYRSAL  360
            F SF+P+ S  A + +R+++R WRL   + + +L ++A L NP ++GW +YYG FYR+A+
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNR-QTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  361  TPVLRHLERVLVKWAQRKYKRLRRHSINAAHWLGQVARRDPNLLVLWQIG  410
              +++H++R L +WA+RKYK L+R+    ++WL+++    P L+  W++ 
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

29) SinmeB_0629 in NC_017322


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALRVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

30) SinmeB_0952 in NC_017322


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALRVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

31) SinmeB_3507 in NC_017323


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALRVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

32) SinmeB_3643 in NC_017323


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALRVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

33) SinmeB_5740 in NC_017324


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALRVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

34) C770_GR4Chr1748 in NC_019845


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALRVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

35) C770_GR4Chr1869 in NC_019845


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALRVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

36) C770_GR4Chr3316 in NC_019845


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALRVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

37) C770_GR4Chr3415 in NC_019845


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALRVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

38) C770_GR4pB199 in NC_019847


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALRVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

39) C770_GR4pC0539 in NC_019848


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALRVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

40) C770_GR4pC0643 in NC_019848


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALRVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

41) C770_GR4pC0770 in NC_019848


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALRVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

42) C770_GR4pC0899 in NC_019848


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALRVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

43) C770_GR4pC1103 in NC_019848


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALRVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

44) BN406_06101 in NC_018701


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  418 bits (1573),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALRVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

45) SMa1801 in NC_003037


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  417 bits (1570),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALKVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQW  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

46) SM_b20780 in NC_003078


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  417 bits (1570),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALKVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQW  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

47) SM2011_a1801 in NC_020527


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  417 bits (1570),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALKVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQW  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

48) SM2011_b20780 in NC_020560


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  417 bits (1570),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 226/416 (55%), Positives = 317/416 (77%), Gaps = 2/416 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEALKVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQW  301
            AE +   ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRS  361
            D++F ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  ALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  417
            A+  + + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

49) BpOF4_20224 in NC_013792


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  417 bits (1570),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 212/409 (52%), Positives = 311/409 (77%), Gaps = 1/409 (0%)

Query  1    MHKTKPYAISKKIVFEAFNRVKANKGSAGIDEQSIDEFERNLKDNLYKVWNRMSSGSYIP  60
            +  +KPY I+K+ V +A+++V+AN+G+AGID+++I +FER+L  NLYK+WNRMSSGSY+P
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PAVKAVEIPKKAGGIRTLGIPTVADRIAQMTVKLYFEPLVEPFFHEDSYGYRPKKSAIQA  120
            P+VK VEIPK +GG R LG+PTV+DR+AQ  VKL +EP ++++FH DSYGYRP +SA QA
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  IETTRKRCWKYNWVLEFDIKGLFDNIDHELLMRAVDKHTDIEWVKLYIKRWLTAPFQTKE  180
            +  TR RCW+Y+WV+EFDIK+ FD+I+H LLM+AV  H   +W+ LYI RWL APF+T +
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GIK-ERTSGTPQGGVISPVLANLFLHYAFDKWMAINHPRNPFARYADDAVIHCKTEEEAK  239
            G++  R  GTPQGGV+SP+L NLF+HYAFD WM    P  PFARYADDAV+HC++  +A 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  240  RVLESLNQRMNECKLELHPSKTKIVYCKDADRREDHKNITFDFLGYTFRPRLSKNRWGKH  299
             V+ S+  R+  C L +HP K+K+VYCKD++RR +  +++F FLG+TFRPR + ++ ++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  300  FVNFTPAisnkskksiqqkVRDWKLQLKADKELIDLSNMFNSVIQGWINYYGKFYKSEMY  359
            F +F P+ S  + K ++Q VR W+L+ +++  L+D++ ++N+VIQGW +YYG FY++ M 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  360  SSLRHINKALIMWARRKYKKLSRHKKRAEHFLGRISKQNPELFKHWDLG  408
            + ++HI++AL  WARRKYK L R+K+R  + L+++    P LF HW + 
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

50) Ppha_0416 in NC_011060


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  416 bits (1567),  Expect = 8e-118, Method: Compositional matrix adjust.
 Identities = 223/406 (55%), Positives = 302/406 (75%), Gaps = 0/406 (0%)

Query  2    TKPYEISKELVLKAYQQVKSNGGAAGVDRESLQAFETKLKDNLYKVWNRLSSGSYFPPPV  61
            +KPY+I+K  V  AYQQV++N GAAG+D E++  FE  L  NLYK+WNR+SSGSYFPPPV
Sbjct  7    AKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPV  66

Query  62   RGVGIPKKSGGVRMLGVPTVADRVAQSVVKMVLEPILEPVFHEDSYGYRPGRSAHDAIAV  121
            + V IPK SGG R LGVPTV+DRVAQ+VVK+++EP L+++FH DSYGYRPGRSA +A+A+
Sbjct  67   KQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAI  126

Query  122  VRKRNWEYDWVVEFDIKGLFDNIDHELLMRALRKHCQTPWVFLYVERWLKAPMETPEGEL  181
             R R W YDWVVEFDIK+ FD+I+H LLM+A+R H +  W++LY+ERWL AP ET +G  
Sbjct  127  TRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMR  186

Query  182  IERTKGTPQGGVVSPLLANLFLHYAFDRWVSENLPGVPFCRYSDDGVLHCKSKIQAELVK  241
            + R +GTPQGGV+SPLL NLF+HYAFD W+    P  PF RY+DD+V+HC+S+ QAE V 
Sbjct  187  VPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVM  246

Query  242  RKIGERFRECGLELHPDKTQIVYCRDSNRKDEHPVNQFTFLGFTFCSREAKKKDGTYFIG  301
            R I+ R+  CGL +HP+K+++VYC+DSNR+   P   FTFLGFTF +R A  K++  F +
Sbjct  247  RSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTS  306

Query  302  FLPGVSRDALRHMRQTIRRWKLQLKNSLELADLSAQFNPILRGWKNYYTRFYGSAMAPVW  361
            FLPG S DAL++MRQ++RRW+L+ +  + L D++  +NP+++GW +YY  FY +AM  + 
Sbjct  307  FLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIF  366

Query  362  QHMNYYLAHWMMRKYKQLSGHKTRASRKLRLLAEENPNLFAHWKAG  407
            QH++  L +W  RKYK L  +K R S+ L  +    P LF HW+  
Sbjct  367  QHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

51) Ppha_0963 in NC_011060


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  416 bits (1567),  Expect = 8e-118, Method: Compositional matrix adjust.
 Identities = 223/406 (55%), Positives = 302/406 (75%), Gaps = 0/406 (0%)

Query  2    TKPYEISKELVLKAYQQVKSNGGAAGVDRESLQAFETKLKDNLYKVWNRLSSGSYFPPPV  61
            +KPY+I+K  V  AYQQV++N GAAG+D E++  FE  L  NLYK+WNR+SSGSYFPPPV
Sbjct  7    AKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPV  66

Query  62   RGVGIPKKSGGVRMLGVPTVADRVAQSVVKMVLEPILEPVFHEDSYGYRPGRSAHDAIAV  121
            + V IPK SGG R LGVPTV+DRVAQ+VVK+++EP L+++FH DSYGYRPGRSA +A+A+
Sbjct  67   KQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAI  126

Query  122  VRKRNWEYDWVVEFDIKGLFDNIDHELLMRALRKHCQTPWVFLYVERWLKAPMETPEGEL  181
             R R W YDWVVEFDIK+ FD+I+H LLM+A+R H +  W++LY+ERWL AP ET +G  
Sbjct  127  TRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMR  186

Query  182  IERTKGTPQGGVVSPLLANLFLHYAFDRWVSENLPGVPFCRYSDDGVLHCKSKIQAELVK  241
            + R +GTPQGGV+SPLL NLF+HYAFD W+    P  PF RY+DD+V+HC+S+ QAE V 
Sbjct  187  VPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVM  246

Query  242  RKIGERFRECGLELHPDKTQIVYCRDSNRKDEHPVNQFTFLGFTFCSREAKKKDGTYFIG  301
            R I+ R+  CGL +HP+K+++VYC+DSNR+   P   FTFLGFTF +R A  K++  F +
Sbjct  247  RSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTS  306

Query  302  FLPGVSRDALRHMRQTIRRWKLQLKNSLELADLSAQFNPILRGWKNYYTRFYGSAMAPVW  361
            FLPG S DAL++MRQ++RRW+L+ +  + L D++  +NP+++GW +YY  FY +AM  + 
Sbjct  307  FLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIF  366

Query  362  QHMNYYLAHWMMRKYKQLSGHKTRASRKLRLLAEENPNLFAHWKAG  407
            QH++  L +W  RKYK L  +K R S+ L  +    P LF HW+  
Sbjct  367  QHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

52) Ppha_1076 in NC_011060


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  416 bits (1567),  Expect = 8e-118, Method: Compositional matrix adjust.
 Identities = 223/406 (55%), Positives = 302/406 (75%), Gaps = 0/406 (0%)

Query  2    TKPYEISKELVLKAYQQVKSNGGAAGVDRESLQAFETKLKDNLYKVWNRLSSGSYFPPPV  61
            +KPY+I+K  V  AYQQV++N GAAG+D E++  FE  L  NLYK+WNR+SSGSYFPPPV
Sbjct  7    AKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPV  66

Query  62   RGVGIPKKSGGVRMLGVPTVADRVAQSVVKMVLEPILEPVFHEDSYGYRPGRSAHDAIAV  121
            + V IPK SGG R LGVPTV+DRVAQ+VVK+++EP L+++FH DSYGYRPGRSA +A+A+
Sbjct  67   KQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAI  126

Query  122  VRKRNWEYDWVVEFDIKGLFDNIDHELLMRALRKHCQTPWVFLYVERWLKAPMETPEGEL  181
             R R W YDWVVEFDIK+ FD+I+H LLM+A+R H +  W++LY+ERWL AP ET +G  
Sbjct  127  TRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMR  186

Query  182  IERTKGTPQGGVVSPLLANLFLHYAFDRWVSENLPGVPFCRYSDDGVLHCKSKIQAELVK  241
            + R +GTPQGGV+SPLL NLF+HYAFD W+    P  PF RY+DD+V+HC+S+ QAE V 
Sbjct  187  VPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVM  246

Query  242  RKIGERFRECGLELHPDKTQIVYCRDSNRKDEHPVNQFTFLGFTFCSREAKKKDGTYFIG  301
            R I+ R+  CGL +HP+K+++VYC+DSNR+   P   FTFLGFTF +R A  K++  F +
Sbjct  247  RSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTS  306

Query  302  FLPGVSRDALRHMRQTIRRWKLQLKNSLELADLSAQFNPILRGWKNYYTRFYGSAMAPVW  361
            FLPG S DAL++MRQ++RRW+L+ +  + L D++  +NP+++GW +YY  FY +AM  + 
Sbjct  307  FLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIF  366

Query  362  QHMNYYLAHWMMRKYKQLSGHKTRASRKLRLLAEENPNLFAHWKAG  407
            QH++  L +W  RKYK L  +K R S+ L  +    P LF HW+  
Sbjct  367  QHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

53) Ppha_1245 in NC_011060


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  416 bits (1567),  Expect = 8e-118, Method: Compositional matrix adjust.
 Identities = 223/406 (55%), Positives = 302/406 (75%), Gaps = 0/406 (0%)

Query  2    TKPYEISKELVLKAYQQVKSNGGAAGVDRESLQAFETKLKDNLYKVWNRLSSGSYFPPPV  61
            +KPY+I+K  V  AYQQV++N GAAG+D E++  FE  L  NLYK+WNR+SSGSYFPPPV
Sbjct  7    AKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPV  66

Query  62   RGVGIPKKSGGVRMLGVPTVADRVAQSVVKMVLEPILEPVFHEDSYGYRPGRSAHDAIAV  121
            + V IPK SGG R LGVPTV+DRVAQ+VVK+++EP L+++FH DSYGYRPGRSA +A+A+
Sbjct  67   KQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAI  126

Query  122  VRKRNWEYDWVVEFDIKGLFDNIDHELLMRALRKHCQTPWVFLYVERWLKAPMETPEGEL  181
             R R W YDWVVEFDIK+ FD+I+H LLM+A+R H +  W++LY+ERWL AP ET +G  
Sbjct  127  TRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMR  186

Query  182  IERTKGTPQGGVVSPLLANLFLHYAFDRWVSENLPGVPFCRYSDDGVLHCKSKIQAELVK  241
            + R +GTPQGGV+SPLL NLF+HYAFD W+    P  PF RY+DD+V+HC+S+ QAE V 
Sbjct  187  VPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVM  246

Query  242  RKIGERFRECGLELHPDKTQIVYCRDSNRKDEHPVNQFTFLGFTFCSREAKKKDGTYFIG  301
            R I+ R+  CGL +HP+K+++VYC+DSNR+   P   FTFLGFTF +R A  K++  F +
Sbjct  247  RSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTS  306

Query  302  FLPGVSRDALRHMRQTIRRWKLQLKNSLELADLSAQFNPILRGWKNYYTRFYGSAMAPVW  361
            FLPG S DAL++MRQ++RRW+L+ +  + L D++  +NP+++GW +YY  FY +AM  + 
Sbjct  307  FLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIF  366

Query  362  QHMNYYLAHWMMRKYKQLSGHKTRASRKLRLLAEENPNLFAHWKAG  407
            QH++  L +W  RKYK L  +K R S+ L  +    P LF HW+  
Sbjct  367  QHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

54) Ppha_2112 in NC_011060


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  416 bits (1567),  Expect = 8e-118, Method: Compositional matrix adjust.
 Identities = 223/406 (55%), Positives = 302/406 (75%), Gaps = 0/406 (0%)

Query  2    TKPYEISKELVLKAYQQVKSNGGAAGVDRESLQAFETKLKDNLYKVWNRLSSGSYFPPPV  61
            +KPY+I+K  V  AYQQV++N GAAG+D E++  FE  L  NLYK+WNR+SSGSYFPPPV
Sbjct  7    AKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPV  66

Query  62   RGVGIPKKSGGVRMLGVPTVADRVAQSVVKMVLEPILEPVFHEDSYGYRPGRSAHDAIAV  121
            + V IPK SGG R LGVPTV+DRVAQ+VVK+++EP L+++FH DSYGYRPGRSA +A+A+
Sbjct  67   KQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAI  126

Query  122  VRKRNWEYDWVVEFDIKGLFDNIDHELLMRALRKHCQTPWVFLYVERWLKAPMETPEGEL  181
             R R W YDWVVEFDIK+ FD+I+H LLM+A+R H +  W++LY+ERWL AP ET +G  
Sbjct  127  TRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMR  186

Query  182  IERTKGTPQGGVVSPLLANLFLHYAFDRWVSENLPGVPFCRYSDDGVLHCKSKIQAELVK  241
            + R +GTPQGGV+SPLL NLF+HYAFD W+    P  PF RY+DD+V+HC+S+ QAE V 
Sbjct  187  VPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVM  246

Query  242  RKIGERFRECGLELHPDKTQIVYCRDSNRKDEHPVNQFTFLGFTFCSREAKKKDGTYFIG  301
            R I+ R+  CGL +HP+K+++VYC+DSNR+   P   FTFLGFTF +R A  K++  F +
Sbjct  247  RSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTS  306

Query  302  FLPGVSRDALRHMRQTIRRWKLQLKNSLELADLSAQFNPILRGWKNYYTRFYGSAMAPVW  361
            FLPG S DAL++MRQ++RRW+L+ +  + L D++  +NP+++GW +YY  FY +AM  + 
Sbjct  307  FLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIF  366

Query  362  QHMNYYLAHWMMRKYKQLSGHKTRASRKLRLLAEENPNLFAHWKAG  407
            QH++  L +W  RKYK L  +K R S+ L  +    P LF HW+  
Sbjct  367  QHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

55) RPSI07_0226 in NC_014311


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  414 bits (1559),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 220/409 (54%), Positives = 310/409 (76%), Gaps = 0/409 (0%)

Query  1    MNQPKPFAVSKRAVWEAYKKVKANRGAAGVDGQSIEEFEQDLSGNLYKLWNRLASGSYMP  60
            ++ +KP+ ++KR+VW+AY++V+ANRGAAG+D+++I +FE+DLS NLYKLWNR++SGSY P
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PAVRCVEIPKATGGTRPLGIPTVADRIGQMVVKDALEPILEPCFHHDSYGYRPNKSAHDA  120
            P+V+ VEIPKA+GGTR LG+PTV+DR++Q VVK  +EP L++ FH DSYGYRP +SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  LAVARQRCWRAAWVLDVDIKGFFDNIDHALLMKAVRKHIDCRWITLYIERWLTAPVQLPD  180
            +A++R+RCWR  WV++ DIK+ FD+I+H+LLMKAVR HI   WI LYIERWL AP +  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GTSQARNKGTPQGGVISPLLANLFLHYVFDMWMVRNFPANGFERYADDVVIHSTSLKQVT  240
            G   +R++GTPQGGV+SPLL NLF+HY FD WM R  P   F RYADD V+H  S KQ  
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  MLRAQLTERLADCKLEMSPGKTKIVYCKDKRRKGGYPEISFDFLGYTFGPRKSRAKDGSI  300
             +   ++ RLA C L M P K+K+VYCKD  R++GYP++SF FLG+TF PRK+ +K++ +
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  SLNFLPAISGKAAKAIRQTVRDWSLHRRTPISLEEIARRINPVVRGWVDYYGRFYRSKLC  360
              +FLP+ S+ A K +RQ+VR W L+R+T ++L ++AR  NPV++GW +YYG FYR+ + 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  361  LVLSHIDLHLAKWIARKHKRVRKSLVRAYEWLRRIRGECPELFAHWRMA  409
             ++ HID  L +W  RK K +++   R  +WL ++R   P LF HWR++
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

56) NGR_b07990 in NC_012586


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  413 bits (1555),  Expect = 7e-117, Method: Compositional matrix adjust.
 Identities = 224/411 (55%), Positives = 313/411 (77%), Gaps = 2/411 (0%)

Query  19   DKPFRIEKRRVYEAYKAVKANHGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTYFPPPV  78
             KP+ I KR V +AY+ V+AN+GAAG+D++T+  FE+DL+ NLYK+WNRMSSG+YFPPPV
Sbjct  7    AKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPV  66

Query  79   RAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSALDAVGV  138
            + V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+SA +AV++
Sbjct  67   KQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAI  126

Query  139  TRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCKWALLYIERWLTAPMEKNGEV-  197
            TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K  W LLYIERWL AP E ++ + 
Sbjct  127  TRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMR  186

Query  198  IERSRGTPQGGVVSPILSNLFLHYAFDLWMTRTHADLPWCRYADDGLVHCRSEQQAEALK  257
            + R RGTPQGGV+SP+L NLF+HYAFD WM RT ++ P  RYADD++VHCRS +QAE + 
Sbjct  187  VPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVM  246

Query  258  VELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQRDEFFC  317
              ++SRLAACGL MHP K+K+VYCKD  RR +YP+V+F FLG+ FRPR+  + Q D++F 
Sbjct  247  RSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-DQLFT  305

Query  318  GYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRSALSTL  377
            ++ P+ S+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG + R+A+  +
Sbjct  306  SFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGI  365

Query  378  ADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNT  428
             + +++ L  W RRK+K ++ +K R S  L K+    P LF HW+  G + 
Sbjct  366  FQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

57) Paes_0629 in NC_011059


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  413 bits (1554),  Expect = 8e-117, Method: Compositional matrix adjust.
 Identities = 217/408 (54%), Positives = 315/408 (78%), Gaps = 0/408 (0%)

Query  1    MTQVKPFPITKRQVWEAYKRVKANQGGAGVDGQSIAEFDEAMENNLYKLWNRLASGSYMP  60
            ++  KP+ I+KR VW+AY++V+AN+G+AG+D+++IA+F+  + +NLYKLWNR++SGSY P
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PPVKRVEIPKADGGLRPLGVPTVADRIAQTVVKQVLEPEMERHFHPDSYGYRPGKSAHQA  120
            PPVK+VEIPKA GG R LGVPTV+DR+AQTVVK ++EPE++  FH+DSYGYRPG+SA QA
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VGEARKRCWRNDWVVDLDIRGFFDAIDHELLMRALHSHTQERWVLLYIERWLKAPVQLPD  180
            V+ +R RCWR DWVV++DI++ FD I+H LLM+A++ H +E W+LLYIERWL AP +  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GTLQKRGAGTPQGGVISPLLANLMLHYTFDAWMQRMFPHVSFERYADDGVCHCRTREQAE  240
            G    R  GTPQGGV+SPLL NL +HY+FD+WMQR  P+ +F RYADD+V HCR+R QAE
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  ELMAALKQRFVDCKLELHPEKTRIIYCKDDDRCGNYPVTSFDFLGFTFRARRSRNRWGKY  300
             +M ++  R+  C L +HPEK++++YCKD +R + YP  SF FLGFTFR+R++ ++ ++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FINFSPAISNKAGKRIRQEVRSWKLHLRSDKALEDLARMFNAHIRGWVNYYSVFYKSALY  360
            F +F P+ S  A KR+RQ VR W+L+ +++ +L D+AR++N+ I+GW +YY+ FY++A+ 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  361  PTLRHIDRKLTLWATRKFKRLKGHRRRATHVLESIARRNTRMFAHWPL  408
              ++HIDR L  WA RK+K L  ++RR ++ L+ +     R+F HW +
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRV  411

58) Theba_1603 in NC_017934


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  412 bits (1549),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 212/405 (53%), Positives = 308/405 (77%), Gaps = 1/405 (0%)

Query  2    RSYEIPKKVVLEAFKKVKENRGAEGIDEVSLEEFEADLDNNLYKIWNRMTSGSYFPPPVK  61
            ++Y+I+K+ V +A+++V+ NRGA GID+ ++ +FE DL +NLYK+WNRM+SGSYFPPPVK
Sbjct  8    KPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVK  67

Query  62   AIEIEKKSGGKRVLGIPTVGDRVAQMVAKIYLNPLVDPYFHKDSYGYREGKSAIDALEVT  121
             +EI K SGG R LG+PTVGDRVAQ V K+ ++P +D+ FH DSYGYR G+SA +A+ +T
Sbjct  68   QVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAIT  127

Query  122  RQRCWRYDWVLEFDIKGLFDNIDHELLMRAVKKHVKIPWLILYIERWLKAPFIQANGRVE  181
            R+RCWRYDWV+EFDIK+ FD+I+H LLM+AV+ H+K  W++LYIERWL APF   +G   
Sbjct  128  RERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRV  187

Query  182  ERSKGTPQGGVISPVLANLFMHYAFDKWMERTHPDKPFARYADDGVIHCRTLEEARLLLE  241
             R +GTPQGGV+SP+L NLFMHYAFD WM+RT P+ PFARYADD+V+HCR+  +A  ++ 
Sbjct  188  PRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMR  247

Query  242  SLKERMEECKLKLHPEKTRIVYCKDDKRKGEYPNTSFDFLGYTFRVRSCKARNGRIFYSF  301
            S+  R+  C L +HPEK+++VYCKD +R++ YP+ SF FLG+TFR R   ++++++F SF
Sbjct  248  SIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSF  307

Query  302  TPAVSEQAKKAMRQKIRRMRLQTKSYLSIEELSERINPVIRGWINYYGHFRRFEMYTVLS  361
             P+ S +A K MRQ +RR RL+ ++ +++ +++   NPVI+GW +YYG F R  M  ++ 
Sbjct  308  LPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQ  367

Query  362  QLNKALVQWVRNKYKK-RRGRTKAGKWLETLARREPRLFVHWTMG  405
            ++++AL +W R KYK  +R + + ++WL+ +    PRLF HW + 
Sbjct  368  HIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

59) Theba_1781 in NC_017934


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  412 bits (1550),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 212/405 (53%), Positives = 308/405 (77%), Gaps = 1/405 (0%)

Query  2    RSYEIPKKVVLEAFKKVKENRGAEGIDEVSLEEFEADLDNNLYKIWNRMTSGSYFPPPVK  61
            ++Y+I+K+ V +A+++V+ NRGA GID+ ++ +FE DL +NLYK+WNRM+SGSYFPPPVK
Sbjct  8    KPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVK  67

Query  62   AIEIEKKSGGKRVLGIPTVGDRVAQMVAKIYLNPLVDPYFHKDSYGYREGKSAIDALEVT  121
             +EI K SGG R LG+PTVGDRVAQ V K+ ++P +D+ FH DSYGYR G+SA +A+ +T
Sbjct  68   QVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAIT  127

Query  122  RQRCWRYDWVLEFDIKGLFDNIDHELLMRAVKKHVKIPWLILYIERWLKAPFMQANGRVE  181
            R+RCWRYDWV+EFDIK+ FD+I+H LLM+AV+ H+K  W++LYIERWL APF   +G   
Sbjct  128  RERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRV  187

Query  182  ERSKGTPQGGVISPVLANLFMHYAFDKWMERTHPDKPFARYADDGVIHCRTLEEARLLLE  241
             R +GTPQGGV+SP+L NLFMHYAFD WM+RT P+ PFARYADD+V+HCR+  +A  ++ 
Sbjct  188  PRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMR  247

Query  242  SLKERMEECKLKLHPEKTRIVYCKDDKRKGEYPNTSFDFLGYTFRVRSCKARNGRIFYSF  301
            S+  R+  C L +HPEK+++VYCKD +R++ YP+ SF FLG+TFR R   ++++++F SF
Sbjct  248  SIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSF  307

Query  302  TPAVSEQAKKAMRQKIRRMRLQTKSYLSIEELSERINPVIRGWINYYGHFRRFEMYTVLS  361
             P+ S +A K MRQ +RR RL+ ++ +++ +++   NPVI+GW +YYG F R  M  ++ 
Sbjct  308  LPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQ  367

Query  362  QLNKALVQWVRNKYKK-RRGRTKAGKWLETLARREPRLFVHWTMG  405
            ++++AL +W R KYK  +R + + ++WL+ +    PRLF HW + 
Sbjct  368  HIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

60) BDL_5148 in NC_021877


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  411 bits (1548),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 226/408 (56%), Positives = 312/408 (77%), Gaps = 0/408 (0%)

Query  1    MTRAKPFAIQKRDVWEAFKRVKANHGAAGVDGQSIEAFEAKLSANLYKLWNRMSSGSYMP  60
            ++ AKP+ I KR VW+A+++V+AN+GAAG+D+++I  FE  LS NLYKLWNRMSSGSY P
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PPVRRVDIPKAGGGTRPLGIPTVADRIAQEVVRRYLEPILEPVFHADSYGYRPGRSAIDA  120
            PPV++V+IPKA+GGTR LG+PTV+DR+AQ VV+  +EP L+++FH+DSYGYRPGRSA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  IRTARERCWRSDWVLDIDIKGFFDNIDHELLLKAIRRHTDCVWAVLYIERWLKAPAMLDD  180
            +  +RERCWR DWV+++DIK+ FD+I+H LL+KA+R H    W +LYIERWL AP   DD
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GELVARDRGTPQGGVISPLLANLFLHYAFDVWIGRAMPGVSFERYADDIICHCRTERQAK  240
            G  V+R+RGTPQGGV+SPLL NLF+HYAFD W+ R+ P  +F RYADD + HCR+ +QA 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  ALWARLDERLRSCGLALHPQKTKLVYCKDTNRKGEYPCVSFDFLGYTFRPRLAQWRGGLY  300
             +   +  RL +CGL++HP+K+K+VYCKD+NR++ YP VSF FLG+TFRPR A  + +  
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  GVSFLPGASPRALKEVRKAVRNWGLQRRSDKGLTDLARMFNPYIRGWIGYFSCFYKSALY  360
              SFLPGAS+ ALK +R+AVR W L+R+++  L D+AR++NP I+GW  Y++ FY++A+ 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  361  PTLRQIDAHLLRWVARKFKRFRERPRGARAWLAKIIRAQPGLFAHWSL  408
              +++ID  L RW  RK+K ++ R R    WL K+    P LF HW +
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRV  411

61) Cha6605_1363 in NC_019697


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  411 bits (1547),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 214/406 (53%), Positives = 310/406 (77%), Gaps = 0/406 (0%)

Query  58   MEQAKPLSITKRQVWEAYKRVKANKGAAGVDGQTIEKFEENLSDNLYKLWNRMTSGSYFP  117
            +  AKP  I+KR VW+AY++V+AN+GAAG+D++TI  FE +LS NLYKLWNRM+SGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  118  SPVLRVEIPKGDGRMRPLGIPTVSDRVAQMVAKDLLEPELEKHFHPDSYGYRPGKSALDA  177
            +PV +VEIPK+ G  R LG+PTV+DRVAQ V K L+EPEL+  FH+DSYGYRPG+SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  178  VGMARKRCWKSNWVLELDIKGFFDNIDHELMMRAVRVHTEEKWVILYIERWLKSPIQMPD  237
            V+++R RCW+ +WV+E+DIK+ FD+I+H L+M+AVR+H  E W++LYIERWL +P++  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  238  GTKQLPDKGLPQGGVASPLLANLFLHYAFDKWMERKNPDIQFERYADDAVCHCKSEAQAQ  297
            G +   ++G PQGGV SPLL NLF+HYAFD WM+R +P+  F RYADDAV HC+S  QA+
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  298  KLKQDLNERMKEVGLELHPEKTNIVYCKDDDRREEYPLTSFDFLGYTFRPRRSKNRWGKH  357
             + + +  R+   GL +HPEK+++VYCKD +RR  YP  SF FLG+TFRPR++ ++ ++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  358  FINFTPAISNQAAKAIRKTSRQWDWQLRSDKKLEDLARMFNPVIRGWINYYGRYYKSALY  417
            F +F P+ S +A K +R++ R+W  + +++  L D+AR++NPVI+GW +YYG +Y++A+ 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  418  PTLKCLERRLVMWATRKYKRLRNHRRQAAQWLRRIARKQPNLFAHW  463
              ++ ++R L  WA RKYK L+ ++R+ +QWL ++    P LF HW
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

62) Cha6605_1826 in NC_019697


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  411 bits (1547),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 214/406 (53%), Positives = 310/406 (77%), Gaps = 0/406 (0%)

Query  58   MEQAKPLSITKRQVWEAYKRVKANKGAAGVDGQTIEKFEENLSDNLYKLWNRMTSGSYFP  117
            +  AKP  I+KR VW+AY++V+AN+GAAG+D++TI  FE +LS NLYKLWNRM+SGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  118  SPVLRVEIPKGDGRMRPLGIPTVSDRVAQMVAKDLLEPELEKHFHPDSYGYRPGKSALDA  177
            +PV +VEIPK+ G  R LG+PTV+DRVAQ V K L+EPEL+  FH+DSYGYRPG+SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  178  VGMARKRCWKSNWVLELDIKGFFDNIDHELMMRAVRVHTEEKWVILYIERWLKSPIQMPD  237
            V+++R RCW+ +WV+E+DIK+ FD+I+H L+M+AVR+H  E W++LYIERWL +P++  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  238  GTKQLPDKGLPQGGVASPLLANLFLHYAFDKWMERKNPDIQFERYADDAVCHCKSEAQAQ  297
            G +   ++G PQGGV SPLL NLF+HYAFD WM+R +P+  F RYADDAV HC+S  QA+
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  298  KLKQDLNERMKEVGLELHPEKTNIVYCKDDDRREEYPLTSFDFLGYTFRPRRSKNRWGKH  357
             + + +  R+   GL +HPEK+++VYCKD +RR  YP  SF FLG+TFRPR++ ++ ++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  358  FINFTPAISNQAAKAIRKTSRQWDWQLRSDKKLEDLARMFNPVIRGWINYYGRYYKSALY  417
            F +F P+ S +A K +R++ R+W  + +++  L D+AR++NPVI+GW +YYG +Y++A+ 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  418  PTLKCLERRLVMWATRKYKRLRNHRRQAAQWLRRIARKQPNLFAHW  463
              ++ ++R L  WA RKYK L+ ++R+ +QWL ++    P LF HW
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

63) Cha6605_2100 in NC_019697


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  411 bits (1547),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 214/406 (53%), Positives = 310/406 (77%), Gaps = 0/406 (0%)

Query  58   MEQAKPLSITKRQVWEAYKRVKANKGAAGVDGQTIEKFEENLSDNLYKLWNRMTSGSYFP  117
            +  AKP  I+KR VW+AY++V+AN+GAAG+D++TI  FE +LS NLYKLWNRM+SGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  118  SPVLRVEIPKGDGRMRPLGIPTVSDRVAQMVAKDLLEPELEKHFHPDSYGYRPGKSALDA  177
            +PV +VEIPK+ G  R LG+PTV+DRVAQ V K L+EPEL+  FH+DSYGYRPG+SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  178  VGMARKRCWKSNWVLELDIKGFFDNIDHELMMRAVRVHTEEKWVILYIERWLKSPIQMPD  237
            V+++R RCW+ +WV+E+DIK+ FD+I+H L+M+AVR+H  E W++LYIERWL +P++  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  238  GTKQLPDKGLPQGGVASPLLANLFLHYAFDKWMERKNPDIQFERYADDAVCHCKSEAQAQ  297
            G +   ++G PQGGV SPLL NLF+HYAFD WM+R +P+  F RYADDAV HC+S  QA+
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  298  KLKQDLNERMKEVGLELHPEKTNIVYCKDDDRREEYPLTSFDFLGYTFRPRRSKNRWGKH  357
             + + +  R+   GL +HPEK+++VYCKD +RR  YP  SF FLG+TFRPR++ ++ ++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  358  FINFTPAISNQAAKAIRKTSRQWDWQLRSDKKLEDLARMFNPVIRGWINYYGRYYKSALY  417
            F +F P+ S +A K +R++ R+W  + +++  L D+AR++NPVI+GW +YYG +Y++A+ 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  418  PTLKCLERRLVMWATRKYKRLRNHRRQAAQWLRRIARKQPNLFAHW  463
              ++ ++R L  WA RKYK L+ ++R+ +QWL ++    P LF HW
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

64) Theba_1700 in NC_017934


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  411 bits (1545),  Expect = 4e-116, Method: Compositional matrix adjust.
 Identities = 211/405 (53%), Positives = 308/405 (77%), Gaps = 1/405 (0%)

Query  2    RSYEIPKKVVLEAFKKVKENRGAEGIDEVSLEEFEADLDNNLYKIWNRMTSGSYFPPPVK  61
            ++Y+I+K+ V +A+++V+ NRGA GID+ ++ +FE DL +NLYK+WNRM+SGSYFPPPVK
Sbjct  8    KPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVK  67

Query  62   AIEIEKKSGGKRVLGIPTVGDRVAQMVAKIYLNPLVDPYFHKDSYGYREGKSAIDALEVT  121
             +EI K SGG R LG+PTVGDRVAQ V K+ ++P +D+ FH DSYGYR G+SA +A+ +T
Sbjct  68   QVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAIT  127

Query  122  RQRCWQYDWVLEFDIKGLFDNIDHELLMRAVKKHVKIPWLILYIERWLKAPFMQANGRVE  181
            R+RCW+YDWV+EFDIK+ FD+I+H LLM+AV+ H+K  W++LYIERWL APF   +G   
Sbjct  128  RERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRV  187

Query  182  ERSKGTPQGGVISPVLANLFMHYAFDKWMERTHPDKPFARYADDGVIHCRTLEEARLLLE  241
             R +GTPQGGV+SP+L NLFMHYAFD WM+RT P+ PFARYADD+V+HCR+  +A  ++ 
Sbjct  188  PRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMR  247

Query  242  SLKERMEECKLKLHPEKTRIVYCKDDKRKGEYPNTSFDFLGYTFRVRSCKARNGRIFYSF  301
            S+  R+  C L +HPEK+++VYCKD +R++ YP+ SF FLG+TFR R   ++++++F SF
Sbjct  248  SIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSF  307

Query  302  TPAVSEQAKKAMRQKIRRMRLQTKSYLSIEELSERINPVIRGWINYYGHFRRFEMYTVLS  361
             P+ S +A K MRQ +RR RL+ ++ +++ +++   NPVI+GW +YYG F R  M  ++ 
Sbjct  308  LPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQ  367

Query  362  QLNKALVQWVRNKYKK-RRGRTKAGKWLETLARREPRLFVHWTMG  405
            ++++AL +W R KYK  +R + + ++WL+ +    PRLF HW + 
Sbjct  368  HIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

65) Theba_1663 in NC_017934


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  411 bits (1545),  Expect = 5e-116, Method: Compositional matrix adjust.
 Identities = 210/405 (52%), Positives = 308/405 (77%), Gaps = 1/405 (0%)

Query  2    RSYEIPKKVVLEAFKKVKENRGAEGIDEVSLEEFEADLDNNLYKIWNRMTSGSYFPPPVK  61
            ++Y+I+K+ V +A+++V+ NRGA GID+ ++ +FE DL +NLYK+WNRM+SGSYFPPPVK
Sbjct  8    KPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVK  67

Query  62   AIEIEKKSGGKRVLGIPTVGDRVAQMVAKIYLNPLVDPYFHKDSYGYREGKSAIDTLEVT  121
             +EI K SGG R LG+PTVGDRVAQ V K+ ++P +D+ FH DSYGYR G+SA +++ +T
Sbjct  68   QVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAIT  127

Query  122  RQRCWQYDWVLEFDIKGLFDNIDHELLMRAVKKHVKIPWLILYIERWLKAPFMQANGRVE  181
            R+RCW+YDWV+EFDIK+ FD+I+H LLM+AV+ H+K  W++LYIERWL APF   +G   
Sbjct  128  RERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRV  187

Query  182  ERSKGTPQGGVISPVLANLFMHYAFDKWMERTHPDKPFARYADDGVIHCRTLEEARLLLE  241
             R +GTPQGGV+SP+L NLFMHYAFD WM+RT P+ PFARYADD+V+HCR+  +A  ++ 
Sbjct  188  PRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMR  247

Query  242  SLKERMEECKLKLHPEKTRIVYCKDDKRKGEYPNTSFDFLGYTFRVRSCKARNGRIFYSF  301
            S+  R+  C L +HPEK+++VYCKD +R++ YP+ SF FLG+TFR R   ++++++F SF
Sbjct  248  SIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSF  307

Query  302  TPAVSEQAKKAMRQKIRRMRLQTKSYLSIEELSERINPVIRGWINYYGHFRRFEMYTVLS  361
             P+ S +A K MRQ +RR RL+ ++ +++ +++   NPVI+GW +YYG F R  M  ++ 
Sbjct  308  LPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQ  367

Query  362  QLNKALVQWVRNKYKK-RRGRTKAGKWLETLARREPRLFVHWTMG  405
            ++++AL +W R KYK  +R + + ++WL+ +    PRLF HW + 
Sbjct  368  HIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

66) BDL_5531 in NC_021877


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  410 bits (1544),  Expect = 5e-116, Method: Compositional matrix adjust.
 Identities = 225/408 (56%), Positives = 312/408 (77%), Gaps = 0/408 (0%)

Query  1    MTRAKPFAIQKRDVWEAFKRVKANHGAAGVDGQSIEAFEAKLSANLYKLWNRMSSGSYMP  60
            ++ AKP+ I KR VW+A+++V+AN+GAAG+D+++I  FE  LS NLYKLWNRMSSGSY P
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PPVRRVDIPKAGGGTRPLGIPTVADRIAQEVVRRYLEPILEPVFHADSYGYRPGRSAIDA  120
            PPV++V+IPKA+GGTR LG+PTV+DR+AQ VV+  +EP L+++FH+DSYGYRPGRSA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  IRTARERCWRSDWVLDIDIKGFFDNIDHELLLKAIRRHTDCVWAVLYIERWLKAPAMLDD  180
            +  +RERCWR DWV+++DIK+ FD+I+H LL+KA+R H    W +LYIERWL AP   DD
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GELVARDRGTPQGGVISPLLANLFLHYAFDVWIGRAMPGVSFERYADDIICHCRTERQAK  240
            G  V+R+RGTPQGGV+SPLL NLF+HYAFD W+ R+ P  +F RYADD + HCR+ +QA 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  ALWARLDERLRSCSLALHPQKTKLVYCKDTNRKGEYPCVSFDFLGYTFRPRLAQWRGGLY  300
             +   +  RL +C+L++HP+K+K+VYCKD+NR++ YP VSF FLG+TFRPR A  + +  
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  GVSFLPGASPRALKEVRKAVRNWGLQRRSDKGLTDLARMFNPYIRGWIGYFSCFYKSALY  360
              SFLPGAS+ ALK +R+AVR W L+R+++  L D+AR++NP I+GW  Y++ FY++A+ 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  361  PTLRQIDAHLLRWVARKFKRFRERPRGARAWLAKIIRAQPGLFAHWSL  408
              +++ID  L RW  RK+K ++ R R    WL K+    P LF HW +
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRV  411

67) Theba_1767 in NC_017934


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  410 bits (1541),  Expect = 8e-116, Method: Compositional matrix adjust.
 Identities = 211/405 (53%), Positives = 308/405 (77%), Gaps = 1/405 (0%)

Query  2    RSYEIPKKVVLEAFKKVKENRGAEGIDEVSLEEFEADLDNNLYKIWNRMTSGSYFPPPVK  61
            ++Y+I+K+ V +A+++V+ NRGA GID+ ++ +FE DL +NLYK+WNRM+SGSYFPPPVK
Sbjct  8    KPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVK  67

Query  62   AIEIEKKSGGKRVLGIPTVGDRVAQMVAKIYLNPLVDPYFHKDSYGYREGKSAIDALEVT  121
             +EI K SGG R LG+PTVGDRVAQ V K+ ++P +D+ FH DSYGYR G+SA +A+ +T
Sbjct  68   QVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAIT  127

Query  122  RQRCWQYDWVLEFDIKGLFDNIDHELLMRAVKKHVKIPWLILYIERWLKAPFMQANGRVE  181
            R+RCW+YDWV+EFDIK+ FD+I+H LLM+AV+ H+K  W++LYIERWL APF   +G   
Sbjct  128  RERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRV  187

Query  182  ERSKGTPQGGVISPVLANLFMHYAFDKWMERTHPDKPFARYADDGVIHCRTLEEARLLLE  241
             R +GTPQGGV+SP+L NLFMHYAFD WM+RT P+ PFARYADD+V+HCR+  +A  ++ 
Sbjct  188  PRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMR  247

Query  242  SLKERMEECKLKLHPEKTRIVYCKDDKRKGEYPNTSFDFLGYTFRVRSCKARNGRIFYSF  301
            S+  R+  C L +HPEK+++VYCKD +R++ YP+ SF FLG+TFR R   ++++++F SF
Sbjct  248  SIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSF  307

Query  302  TPAVSEQAKKAMRQKIRRMRLQTKSYLSIEELSERINPVIRGWINYYGHFRRFEMYTVLS  361
             P+ S +A K MRQ +RR RL+ ++ +++ +++   NPVI+GW +YYG F R  M  ++ 
Sbjct  308  LPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQ  367

Query  362  RLNKALVQWVRNKYKK-RRGRTKAGKWLETLARREPRLFVHWTMG  405
            ++++AL +W R KYK  +R + + ++WL+ +    PRLF HW + 
Sbjct  368  HIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

68) Theba_2552 in NC_017934


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  410 bits (1542),  Expect = 8e-116, Method: Compositional matrix adjust.
 Identities = 211/405 (53%), Positives = 307/405 (76%), Gaps = 1/405 (0%)

Query  2    RSYEIPKKVVLEAFKKVKENRGAEGIDEVSLEEFEADLDNNLYKIWNRMTSGSYFPPPVK  61
            ++Y+I+K+ V +A+++V+ NRGA GID+ ++ +FE DL +NLYK+WNRM+SGSYFPPPVK
Sbjct  8    KPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVK  67

Query  62   AIEIEKKSGGKRVLGIPTVGDRVAQMVAKIYLNPLVDPYFHKDSYGYREGKSAIDALEVT  121
             +EI K SGG R LG+PTVGDRVAQ V K+ ++P +D+ FH DSYGYR G+SA +A+ +T
Sbjct  68   QVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAIT  127

Query  122  RQRCWRYDWVLEFDIKGLFDNIDHELLMRAVKKHVKIPWLILYIGRWLKAPFMQANGRVE  181
            R+RCWRYDWV+EFDIK+ FD+I+H LLM+AV+ H+K  W++LYI RWL APF   +G   
Sbjct  128  RERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRV  187

Query  182  ERSKGTPQGGVISPVLANLFMHYAFDKWMERTHPDKPFARYADDGVIHCRTLEEARLLLE  241
             R +GTPQGGV+SP+L NLFMHYAFD WM+RT P+ PFARYADD+V+HCR+  +A  ++ 
Sbjct  188  PRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMR  247

Query  242  SLKERMEECKLELHPEKTRIVYCKDDKRKGEYPNTSFDFLGYTFRVRSCKARNGRIFYSF  301
            S+  R+  C L +HPEK+++VYCKD +R++ YP+ SF FLG+TFR R   ++++++F SF
Sbjct  248  SIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSF  307

Query  302  TPAVSEQAKKAMRQKIRRMRLQTKSYLSIEELSERINPVIRGWINYYGHFRRFEMYTVLS  361
             P+ S +A K MRQ +RR RL+ ++ +++ +++   NPVI+GW +YYG F R  M  ++ 
Sbjct  308  LPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQ  367

Query  362  RLNKALVQWVRNKYKK-RRGRTKAGKWLETLARREPRLFVHWTMG  405
            ++++AL +W R KYK  +R + + ++WL+ +    PRLF HW + 
Sbjct  368  HIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

69) Theba_2335 in NC_017934


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  409 bits (1538),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 209/405 (52%), Positives = 307/405 (76%), Gaps = 1/405 (0%)

Query  2    RSYEIPKKVVLEAFKKVKENRGAEGIDEVSLEEFEADLDNNLYKIWNRMTSGSYFPPPVK  61
            ++Y+I+K+ V +A+++V+ NRGA GID+ ++ +FE DL +NLYK+WNRM+SGSYFPPPVK
Sbjct  8    KPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVK  67

Query  62   AIEIEKKSGGKRVLGIPTVGDRVAQMVAKIYLNPLVDPYFHKDSYGYREGKSAIDTLEVT  121
             +EI K SGG R LG+PTVGDRVAQ V K+ ++P +D+ FH DSYGYR G+SA +++ +T
Sbjct  68   QVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAIT  127

Query  122  RQRCWQYDWVLEFDIKGLFDNIDHELLMRAVKKHVKIPWLILYIERWLKAPFIQANGRVE  181
            R+RCW+YDWV+EFDIK+ FD+I+H LLM+AV+ H+K  W++LYIERWL APF   +G   
Sbjct  128  RERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRV  187

Query  182  ERSKGTPQGGVISPVLANLFMHYAFDKWMERTHPDKPFARYADDGVIHCRTLEEARLLLE  241
             R +GTPQGGV+SP+L NLFMHYAFD WM+RT P+ PFARYADD+V+HCR+  +A  ++ 
Sbjct  188  PRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMR  247

Query  242  SLKERMEECKLELHPEKTRIVYCKDDKRKGEYPNTSFDFLGYTFRVRSCKDRNGRIFYGF  301
            S+  R+  C L +HPEK+++VYCKD +R++ YP+ SF FLG+TFR R    +++++F +F
Sbjct  248  SIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSF  307

Query  302  TPAVSEQAKKAMRQKIRRMRLQTKSYLSIEELSERINPVIRGWINYYGHFRRFEMYTVLS  361
             P+ S +A K MRQ +RR RL+ ++ +++ +++   NPVI+GW +YYG F R  M  ++ 
Sbjct  308  LPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQ  367

Query  362  RLNKALVQWVRNKYKK-RRGRTKAGKWLETLARREPRLFVHWTMG  405
            ++++AL +W R KYK  +R + + ++WL+ +    PRLF HW + 
Sbjct  368  HIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

70) Pden_4539 in NC_008688


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  408 bits (1535),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 216/408 (53%), Positives = 309/408 (76%), Gaps = 0/408 (0%)

Query  1    MTEAKPFTIEKREVWEAFRHVDANQGAAGVDGQTLESFGERLGPNLYKLWNRMSSGSYMP  60
            ++ AKP+ I KR VW+A+++V AN+GAAG+D++T+  F   L+ NLYKLWNRMSSGSY P
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   SSVRRVMIPKADGGQRPLGIPTVTDRIAQEVVRLYLEPLVEPVFHRDSYGYRPERSAIDA  120
            ++V++V IPKA GG R LG+PTV DR+AQ VV+L +EP ++++FH DSYGYRP RSA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  IRKARQRCWRYDWVLDMDIKGFFDTIDHELLLKAVRHHTDCRWVLLYIERWLKAPVRMED  180
            +  +R+RCWRYDWV++ DIK+ FD I+H LL+KAVR H    W+LLYIERWL AP   +D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GSLVPQERGTPQGGVISPLLANLFLHYAFDRWLDRENPQVPFERYADDIICHCRTEDEAR  240
            G  VP+ERGTPQGGV+SPLL NLF+HYAFD W++R +P+ PF RYADD + HCR+  +A 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  RLWQQVENRLAGCGLTLHPQKTKIVYCKDTNRKGSFPTVAFDFLGYRFQPRLAIWRGGLF  300
             + + + +RLA+CGLT+HP+K+K+VYCKD+NR++++P V+F FLG+ F+PR A+ + + +
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  GVSYLPAASPKALKSFRRRVRNWGLQRRSDKGLIDLARMFNRQIEGWIGYFRCFYKSALY  360
              S+LP+AS+ ALK  R+ VR W L+R+++  L+D+AR++N  I+GW  Y+  FY++A+ 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  361  STLRLIDAHLVRWVMRKYKRFKQRPRQARLWLARIAKSTPGLFTHWSL  408
            + ++ ID  L RW  RKYK + +R R+   WL ++    P LF HW +
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRV  411

71) Theba_2724 in NC_017934


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  407 bits (1531),  Expect = 5e-115, Method: Compositional matrix adjust.
 Identities = 209/405 (52%), Positives = 306/405 (76%), Gaps = 1/405 (0%)

Query  2    RSYEIPKKVVLEAFKKVKENRGAEGIDEVSLEEFEADLDNNLYKIWNRMTSGSYFPPPVK  61
            ++Y+I+K+ V +A+++V+ NRGA GID+ ++ +FE DL +NLYK+WNRM+SGSYFPPPVK
Sbjct  8    KPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVK  67

Query  62   AIEIEKKSGGKRVLGIPTVGDRVAQMVAKIYLNPLVDPYFHKDSYGYREGKSAIDALEVT  121
             +EI K SGG R LG+PTVGDRVAQ V K+ ++P +D+ FH DSYGYR G+SA +A+ +T
Sbjct  68   QVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAIT  127

Query  122  RQRCWRYDWVLEFDIKGLFDNIDHELLMRAVKKHVKIPWLILYIERWLKAPFMQANGRVE  181
            R+RCWRYDWV+EFDIK+ FD+I+H LLM+AV+ H+K  W++LYIERWL APF   +G   
Sbjct  128  RERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRV  187

Query  182  ERSKGTPQGGVISPVLANLFMHYAFDKWMERTHPDKPFARYADDGVIHCRTLEEARLLLE  241
             R +GTPQGGV+SP+L NLFMHYAFD WM+RT P+ PFARYADD+V+HCR+  +A  ++ 
Sbjct  188  PRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMR  247

Query  242  SLKERMEECKLELHPEKTRIVYCKDDKRKDEYPNTSFDFLGYTFRVRSCKDRNGRIFYGF  301
            S+  R+  C L +HPEK+++VYCKD +R+  YP+ SF FLG+TFR R    +++++F +F
Sbjct  248  SIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSF  307

Query  302  NPAVSEQAKKAMRQKIRRMRLQTKSYLSIEELSERINPVIRGWINYYGHFRKFEMYTVLS  361
             P+ S +A K MRQ +RR RL+ ++ +++ +++   NPVI+GW +YYG F +  M  ++ 
Sbjct  308  LPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQ  367

Query  362  RLHKALVQWVRNKYKK-RRGRTKAGKWLEALARREPHLFVHWTMG  405
            ++++AL +W R KYK  +R + + ++WL+ +    P+LF HW + 
Sbjct  368  HIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

72) Theba_1671 in NC_017934


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  405 bits (1525),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 208/405 (52%), Positives = 305/405 (76%), Gaps = 1/405 (0%)

Query  2    RSYEIPKKVVLEAFKKVKENRGAEGIDEVSLEEFEADLDNNLYKIWNRMTSGSYFPPPVK  61
            ++Y+I+K+ V +A+++V+ NRGA GID+ ++ +FE DL +NLYK+WNRM+SGSYFPPPVK
Sbjct  8    KPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVK  67

Query  62   AIEIEKKSGGKRVLGIPTVGDRVAQMVAKIYLNPLVDPYFHKDSYGYREGKSAIDALEVT  121
             +EI K SGG R LG+PTVGDRVAQ V K+ ++P +D+ FH DSYGYR G+SA +A+ +T
Sbjct  68   QVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAIT  127

Query  122  RQRCWRYDWVLEFDIKGLFDNIDHELLMRAVKKHVKIPWLILYIGRWLKAPFMQANGRVE  181
            R+RCWRYDWV+EFDIK+ FD+I+H LLM+AV+ H+K  W++LYI RWL APF   +G   
Sbjct  128  RERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRV  187

Query  182  ERSKGTPQGGVISPVLANLFMHYAFDKWMERTHPDKPFARYADDGVIHCRTLEEARLLLE  241
             R +GTPQGGV+SP+L NLFMHYAFD WM+RT P+ PFARYADD+V+HCR+  +A  ++ 
Sbjct  188  PRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMR  247

Query  242  SLKERMEECKLKLHPEKTRIVYCKDDKRKDEYPNTSFDFLGYTFRVRSCKDRNGRIFYGF  301
            S+  R+  C L +HPEK+++VYCKD +R+  YP+ SF FLG+TFR R    +++++F +F
Sbjct  248  SIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSF  307

Query  302  NPAVSEQAKKAMRQKIRRMRLQTKSYLSIEELSERINPVIRGWINYYGHFRKFEMYTVLS  361
             P+ S +A K MRQ +RR RL+ ++ +++ +++   NPVI+GW +YYG F +  M  ++ 
Sbjct  308  LPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQ  367

Query  362  RLHKALVQWVRNKYKK-RRGRTKAGKWLEALARREPHLFVHWTMG  405
            ++++AL +W R KYK  +R + + ++WL+ +    P+LF HW + 
Sbjct  368  HIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

73) plu1111 in NC_005126


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  405 bits (1523),  Expect = 3e-114, Method: Compositional matrix adjust.
 Identities = 221/408 (55%), Positives = 321/408 (79%), Gaps = 0/408 (0%)

Query  51   VKSAKPFPVSKRQVWDAYKRVKANRGAAGIDGQTLAGFDENVADNLYKLWNRLASGSYMP  110
            V SAKP+ ++KR VWDAY++V+ANRGAAGID++T+A+F+ +++ NLYKLWNR++SGSY P
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  111  QAVRRVEIPKADGGVRPLGIPAVSDRIAQMVVKQVLEPVLEPLFHADSYGYRPGKSAHQA  170
             +V++VEIPKA GG R LG+P+V+DR+AQ VVK ++EP L+++FH+DSYGYRPG+SA QA
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  171  IAQARTRCWQFDWVVEIDIKGFFDNIDHALLLKAVRHHTQERWLVMYIERWLKAPVQMPD  230
            +A +R RCW++DWVVE+DIK+ FD+I+H+LL+KAVR H +E W+++YIERWL AP +  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  231  GRVQVRNRGTPQGGVISPLISNLFLHYAFDMWMKRQFPGVPFERYADDVVCHCHSQSQAE  290
            G    R+RGTPQGGV+SPL+ NLF+HYAFD WM+R  P  PF RYADD V HC+S+ QAE
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  291  ALISKAGQRFAQCGLELHPQKTRMVYCKDADRRGNYAETRFDFLGYTFRPRLSKNRWGKT  350
             ++   + R+A CGL +HP+K+++VYCKD++RR+ Y++  F FLG+TFRPR + ++ ++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  351  FVNFSPGMSARAGKAIRQEVRSWGLQNRSDKSLYDLAHMFNAKIRGWINYYGAFYKSALY  410
            F +F PG SA A K +RQ VR W L+ +++ +L D+A+++N+ I+GW +YYG+FY++A+ 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  411  PTLRQIDRKLVLWLTrkhkrlrghrrrASHWLARVARSETRLFAHWPL  458
              +++IDR L  W  RK K L+ ++RR S+WL ++     RLF HW +
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRV  411

74) Smed_4903 in NC_009620


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  402 bits (1513),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 324/417 (78%), Gaps = 3/417 (0%)

Query  1    MTSIDTTDKPFRIEKRQVYEAYKAVKANHGAAGVDGETLEMFEKDLARNLYKIWNRMSSG  60
            M+++ ++ KP+ I KR V +AY+ V+AN+GAAG+D+ET+  FE+DL++NLYK+WNRMSSG
Sbjct  1    MSGV-SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSG  59

Query  61   TYFPPPVRAVSIPKKTGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKS  120
            +YFPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+S
Sbjct  60   SYFPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRS  119

Query  121  ALDAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKHVKCNWALLYIERWLVAPM  180
            A +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR H+K +W LLYIERWLVAP 
Sbjct  120  AKQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPF  179

Query  181  EKNGAV-IERTRGTPQGGVVSPILSNLFLHYAFDVWMTRTHPDLPWCRYADDGLVHCRTe  239
            E ++++ + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHCR+ 
Sbjct  180  ETDDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSR  239

Query  240  qeaqalkaalqarlaeCGLQMHPIKTQIVYCKDNRRRKRYPTVKFDFLGYQFRPRQVATA  299
            ++A+ +  ++ +RLA CGL MHP K+++VYCKD+ RR  YP V F FLG+ FRPR+ A +
Sbjct  240  KQAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRK-ALS  298

Query  300  QQDEFFCGYTPAASPTALKSMRATIKSLNIPRQTPGTLAEIAKQINPLLRGWIAYYGRFS  359
            +QD++F ++ P+AS+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG F 
Sbjct  299  KQDQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFY  358

Query  360  RSALFSLADYINRKLKAWIMRKYKRFRFHKTRASQFLRQLARDNRGLFVHWQAFGTN  416
            R+A++++ + I+R L  W  RKYK ++ +K R SQ L ++      LF HW+  G +
Sbjct  359  RTAMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQ  415

75) Smed_5513 in NC_009621


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  402 bits (1513),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 324/417 (78%), Gaps = 3/417 (0%)

Query  1    MTSIDTTDKPFRIEKRQVYEAYKAVKANHGAAGVDGETLEMFEKDLARNLYKIWNRMSSG  60
            M+++ ++ KP+ I KR V +AY+ V+AN+GAAG+D+ET+  FE+DL++NLYK+WNRMSSG
Sbjct  1    MSGV-SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSG  59

Query  61   TYFPPPVRAVSIPKKTGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKS  120
            +YFPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+S
Sbjct  60   SYFPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRS  119

Query  121  ALDAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKHVKCNWALLYIERWLVAPM  180
            A +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR H+K +W LLYIERWLVAP 
Sbjct  120  AKQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPF  179

Query  181  EKNGAV-IERTRGTPQGGVVSPILSNLFLHYAFDVWMTRTHPDLPWCRYADDGLVHCRTe  239
            E ++++ + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHCR+ 
Sbjct  180  ETDDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSR  239

Query  240  qeaqalkaalqarlaeCGLQMHPIKTQIVYCKDNRRRKRYPTVKFDFLGYQFRPRQVATA  299
            ++A+ +  ++ +RLA CGL MHP K+++VYCKD+ RR  YP V F FLG+ FRPR+ A +
Sbjct  240  KQAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRK-ALS  298

Query  300  QQDEFFCGYTPAASPTALKSMRATIKSLNIPRQTPGTLAEIAKQINPLLRGWIAYYGRFS  359
            +QD++F ++ P+AS+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG F 
Sbjct  299  KQDQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFY  358

Query  360  RSALFSLADYINRKLKAWIMRKYKRFRFHKTRASQFLRQLARDNRGLFVHWQAFGTN  416
            R+A++++ + I+R L  W  RKYK ++ +K R SQ L ++      LF HW+  G +
Sbjct  359  RTAMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQ  415

76) Smed_6095 in NC_009621


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  402 bits (1513),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 324/417 (78%), Gaps = 3/417 (0%)

Query  1    MTSIDTTDKPFRIEKRQVYEAYKAVKANHGAAGVDGETLEMFEKDLARNLYKIWNRMSSG  60
            M+++ ++ KP+ I KR V +AY+ V+AN+GAAG+D+ET+  FE+DL++NLYK+WNRMSSG
Sbjct  1    MSGV-SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSG  59

Query  61   TYFPPPVRAVSIPKKTGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKS  120
            +YFPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+S
Sbjct  60   SYFPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRS  119

Query  121  ALDAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKHVKCNWALLYIERWLVAPM  180
            A +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR H+K +W LLYIERWLVAP 
Sbjct  120  AKQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPF  179

Query  181  EKNGAV-IERTRGTPQGGVVSPILSNLFLHYAFDVWMTRTHPDLPWCRYADDGLVHCRTe  239
            E ++++ + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHCR+ 
Sbjct  180  ETDDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSR  239

Query  240  qeaqalkaalqarlaeCGLQMHPIKTQIVYCKDNRRRKRYPTVKFDFLGYQFRPRQVATA  299
            ++A+ +  ++ +RLA CGL MHP K+++VYCKD+ RR  YP V F FLG+ FRPR+ A +
Sbjct  240  KQAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRK-ALS  298

Query  300  QQDEFFCGYTPAASPTALKSMRATIKSLNIPRQTPGTLAEIAKQINPLLRGWIAYYGRFS  359
            +QD++F ++ P+AS+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG F 
Sbjct  299  KQDQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFY  358

Query  360  RSALFSLADYINRKLKAWIMRKYKRFRFHKTRASQFLRQLARDNRGLFVHWQAFGTN  416
            R+A++++ + I+R L  W  RKYK ++ +K R SQ L ++      LF HW+  G +
Sbjct  359  RTAMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQ  415

77) Smed_1223 in NC_009636


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  402 bits (1513),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 324/417 (78%), Gaps = 3/417 (0%)

Query  1    MTSIDTTDKPFRIEKRQVYEAYKAVKANHGAAGVDGETLEMFEKDLARNLYKIWNRMSSG  60
            M+++ ++ KP+ I KR V +AY+ V+AN+GAAG+D+ET+  FE+DL++NLYK+WNRMSSG
Sbjct  1    MSGV-SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSG  59

Query  61   TYFPPPVRAVSIPKKTGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKS  120
            +YFPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK +IEP+LDS+F +DSYGYRPG+S
Sbjct  60   SYFPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRS  119

Query  121  ALDAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKHVKCNWALLYIERWLVAPM  180
            A +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR H+K +W LLYIERWLVAP 
Sbjct  120  AKQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPF  179

Query  181  EKNGAV-IERTRGTPQGGVVSPILSNLFLHYAFDVWMTRTHPDLPWCRYADDGLVHCRTe  239
            E ++++ + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHCR+ 
Sbjct  180  ETDDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSR  239

Query  240  qeaqalkaalqarlaeCGLQMHPIKTQIVYCKDNRRRKRYPTVKFDFLGYQFRPRQVATA  299
            ++A+ +  ++ +RLA CGL MHP K+++VYCKD+ RR  YP V F FLG+ FRPR+ A +
Sbjct  240  KQAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRK-ALS  298

Query  300  QQDEFFCGYTPAASPTALKSMRATIKSLNIPRQTPGTLAEIAKQINPLLRGWIAYYGRFS  359
            +QD++F ++ P+AS+ ALK MR +++   + RQT  TL ++A+  NP+++GW  YYG F 
Sbjct  299  KQDQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFY  358

Query  360  RSALFSLADYINRKLKAWIMRKYKRFRFHKTRASQFLRQLARDNRGLFVHWQAFGTN  416
            R+A++++ + I+R L  W  RKYK ++ +K R SQ L ++      LF HW+  G +
Sbjct  359  RTAMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQ  415

78) Arad_9023 in NC_011983


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  397 bits (1492),  Expect = 7e-112, Method: Compositional matrix adjust.
 Identities = 231/418 (56%), Positives = 320/418 (77%), Gaps = 0/418 (0%)

Query  1    MDRAKPYTIPKREVWEAYKRVRANQGAAGIDGQTIADFEADLRNNLYKLWNRLASGSYFP  60
            +  AKPY I+KR VW+AY++VRAN+GAAGID++TIADFE DL +NLYKLWNR++SGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PPVRRVDIPKSDGKTRPLGIPTVADRVAQMVVKRHLEPVVEPEFHPDSYGYRPGKSALDA  120
            PPV++V+IPK+ G TR LG+PTV+DRVAQ VVK  +EP +++ FH+DSYGYRPG+SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  ISVARQRCWRYNWVLDLDIKAFFDSIEPDLLMRAVRKHTDCPWVLLYIERWLKAPVQMPD  180
            ++++R+RCWRY+WV+++DIKA FD I+ +LLM+AVR H    W+LLYIERWL AP +  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GNLVARERGTPQGGVISPLLASLFLHYAFDMWMCRNFPDIPFERYADDAICHCRSEDQAM  240
            G  V+RERGTPQGGV+SPLL +LF+HYAFD WM R  P+ PF RYADDA+ HCRS  QA 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  ALQNALDARFTDCGLTLHPDKTKIVYCRDESRRGTHPVYKFDFLGYTFRPRLVSKKAGGM  300
             +  ++ +R++ CGLT+HP+K+K+VYC+D +RR+  P   F FLG+TFRPR    K + +
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  GVSFGPAASPTALKAIRGTIRSWSLHLRSDKALDDLARMFNSYIRGWINYYGRFCPSALQ  360
              SF P+AS+ ALK +R ++R W L+ +++ +L D+AR++N+ I+GW +YYG F  +A+ 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  361  PTLWSVERYLARWASGKYkslrrhkrrsrhwllrIAQRQPRLFAHWPLLHGYGRTMGA  418
              +  ++R L RWA  KYK+L+R+KRR  +WL ++    PRLF HW +    G+  GA
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQGWITGA  421

79) LPC_1850 in NC_009494


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  397 bits (1493),  Expect = 7e-112, Method: Compositional matrix adjust.
 Identities = 209/410 (51%), Positives = 309/410 (76%), Gaps = 5/410 (1%)

Query  39   LVTIKPFNIPKQLVWQAYKLVRANAGSAGIDNQSIDEFSQDLKGNLYKLWNRMSSGSYFP  98
            + + KP++I+K+ VW+AY+ VRAN G+AGID+++I +F +DL  NLYKLWNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  99   PAVKEVAIPKKQGGVRKLGIPTVADRIAQMTVKLMMEPLLEPHFLDDSYGYRPNKSALDA  158
            P+VK+V IPK  GG RKLG+PTV+DR+AQ  VKL++EP L++ F  DSYGYRP +SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  159  VGVTRKRCWEYDWVVEFDIKGLFDNLSHELLMKAVKHHISDRWILLYVERWLTAPIQDQH  218
            V++TR RCW YDWVVEFDIK+ FD+++H LLMKAV+ HI + WILLY+ERWL AP++ ++
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  219  GGCLPRTAGTPQGGVISPLLSNLFLHYAFDHWMTKHHPDNPWCRYADDGLAHCRTEKEAE  278
            G  +PR  GTPQGGV+SPLL NLF+HYAFD WM +  P+ P  RYADD++ HCR+ K+AE
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  279  QMLKEIDKRFKSLGLEIHPDKTKIVYCKDGARKGKYKNKSFDFLGYTFKARRVKVRSRNS  338
             +++ I  R+ + GL +HP+K+K+VYCKD+ R++ Y + SF FLG+TF++R+  +  ++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKA-LSKQDQ  302

Query  339  FFIGFTPVVSLKAVKAMTLKLRRGNWR--NNTSLSLQELADFINPMLRGWLAYYGKYSRS  396
            +F +F P  S  A+K M   +RR  WR   +T ++L ++A + NP+++GW  YYG + R+
Sbjct  303  LFTSFLPGASADALKRMRQAVRR--WRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  397  SMYRVWRCVNNMLLAWAKKKYKTLGRSRTKAGKLMERIHKEMPALFVHWR  446
            +M  + + ++  L  WA++KYK+L R + + ++ +++++  +P LF HWR
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWR  410

80) C770_GR4pC0123 in NC_019848


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  395 bits (1487),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 230/412 (56%), Positives = 316/412 (77%), Gaps = 2/412 (0%)

Query  3    SADTTDKPFRIDKRLVYEAYKAVKSNGGAAGVDGQTIEQFEADLKGNLYKIWNRMSSGSY  62
            S+ ++ KP+ I KR V +AY+ V++N GAAG+D++TI +FE DL  NLYK+WNRMSSGSY
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVPIPKKTGGQRILGVPTVSDRIAQMVVKQLIEPELDQIFLKDSYGYRPNKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK LIEPELD IF  DSYGYRP +SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGITRQRCWKYDWVLEFDIKGLFDNISHELLLKAVRKHVKCKWALLYIERWLTAPMEQ  182
            +AV+ITR+RCW+YDWV+EFDIK+ FD+I+H LL+KAVR H+K  W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  DEQ-RIERDCGTPQGGVISPILSNLFLHYAFDLWMDRTHPDLPWCRYADDGLVHCRSEQE  241
            D+  R+ R+ GTPQGGV+SP+L NLF+HYAFD WM+RT P+ P  RYADD++VHCRS ++
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEAVKAALQARLAECQLEMHPTKTKIVYCRDSKRRGQHPNVTFDFLGYCFRPRAVWGTQS  301
            AE V  ++ +RLA C L MHP K+K+VYC+DS+RR+  P+V+F FLG+ FRPR   + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  GRLFCGFTPAVSSSALKAMREKIRDLHIRRQTQLSLNDIARLINPLLRGWISYYGRYAPT  361
            ++LF +F P+ S+ ALK MR+ +R  ++ RQT+++L D+ARL NP+++GW  YYG +  T
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  GLQPILRYVNQTMLAWarrkfkrfgrgkaraSRFLQRLVEQRTDLFVHWQLG  413
            ++  I++ +++++  WARRK+K + R K R S+ L+++      LF HW++ 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

81) C770_GR4pC1032 in NC_019848


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  395 bits (1487),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 230/412 (56%), Positives = 316/412 (77%), Gaps = 2/412 (0%)

Query  3    SADTTDKPFRIDKRLVYEAYKAVKSNGGAAGVDGQTIEQFEADLKGNLYKIWNRMSSGSY  62
            S+ ++ KP+ I KR V +AY+ V++N GAAG+D++TI +FE DL  NLYK+WNRMSSGSY
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVPIPKKTGGQRILGVPTVSDRIAQMVVKQLIEPELDQIFLKDSYGYRPNKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK LIEPELD IF  DSYGYRP +SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGITRQRCWKYDWVLEFDIKGLFDNISHELLLKAVRKHVKCKWALLYIERWLTAPMEQ  182
            +AV+ITR+RCW+YDWV+EFDIK+ FD+I+H LL+KAVR H+K  W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  DEQ-RIERDCGTPQGGVISPILSNLFLHYAFDLWMDRTHPDLPWCRYADDGLVHCRSEQE  241
            D+  R+ R+ GTPQGGV+SP+L NLF+HYAFD WM+RT P+ P  RYADD++VHCRS ++
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEAVKAALQARLAECQLEMHPTKTKIVYCRDSKRRGQHPNVTFDFLGYCFRPRAVWGTQS  301
            AE V  ++ +RLA C L MHP K+K+VYC+DS+RR+  P+V+F FLG+ FRPR   + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  GRLFCGFTPAVSSSALKAMREKIRDLHIRRQTQLSLNDIARLINPLLRGWISYYGRYAPT  361
            ++LF +F P+ S+ ALK MR+ +R  ++ RQT+++L D+ARL NP+++GW  YYG +  T
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  GLQPILRYVNQTMLAWarrkfkrfgrgkaraSRFLQRLVEQRTDLFVHWQLG  413
            ++  I++ +++++  WARRK+K + R K R S+ L+++      LF HW++ 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

82) C770_GR4pC1183 in NC_019848


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  395 bits (1487),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 230/412 (56%), Positives = 316/412 (77%), Gaps = 2/412 (0%)

Query  3    SADTTDKPFRIDKRLVYEAYKAVKSNGGAAGVDGQTIEQFEADLKGNLYKIWNRMSSGSY  62
            S+ ++ KP+ I KR V +AY+ V++N GAAG+D++TI +FE DL  NLYK+WNRMSSGSY
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVPIPKKTGGQRILGVPTVSDRIAQMVVKQLIEPELDQIFLKDSYGYRPNKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK LIEPELD IF  DSYGYRP +SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGITRQRCWKYDWVLEFDIKGLFDNISHELLLKAVRKHVKCKWALLYIERWLTAPMEQ  182
            +AV+ITR+RCW+YDWV+EFDIK+ FD+I+H LL+KAVR H+K  W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  DEQ-RIERDCGTPQGGVISPILSNLFLHYAFDLWMDRTHPDLPWCRYADDGLVHCRSEQE  241
            D+  R+ R+ GTPQGGV+SP+L NLF+HYAFD WM+RT P+ P  RYADD++VHCRS ++
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEAVKAALQARLAECQLEMHPTKTKIVYCRDSKRRGQHPNVTFDFLGYCFRPRAVWGTQS  301
            AE V  ++ +RLA C L MHP K+K+VYC+DS+RR+  P+V+F FLG+ FRPR   + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  GRLFCGFTPAVSSSALKAMREKIRDLHIRRQTQLSLNDIARLINPLLRGWISYYGRYAPT  361
            ++LF +F P+ S+ ALK MR+ +R  ++ RQT+++L D+ARL NP+++GW  YYG +  T
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  GLQPILRYVNQTMLAWarrkfkrfgrgkaraSRFLQRLVEQRTDLFVHWQLG  413
            ++  I++ +++++  WARRK+K + R K R S+ L+++      LF HW++ 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

83) C770_GR4pC1231 in NC_019848


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  395 bits (1487),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 230/412 (56%), Positives = 316/412 (77%), Gaps = 2/412 (0%)

Query  3    SADTTDKPFRIDKRLVYEAYKAVKSNGGAAGVDGQTIEQFEADLKGNLYKIWNRMSSGSY  62
            S+ ++ KP+ I KR V +AY+ V++N GAAG+D++TI +FE DL  NLYK+WNRMSSGSY
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVPIPKKTGGQRILGVPTVSDRIAQMVVKQLIEPELDQIFLKDSYGYRPNKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK LIEPELD IF  DSYGYRP +SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGITRQRCWKYDWVLEFDIKGLFDNISHELLLKAVRKHVKCKWALLYIERWLTAPMEQ  182
            +AV+ITR+RCW+YDWV+EFDIK+ FD+I+H LL+KAVR H+K  W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  DEQ-RIERDCGTPQGGVISPILSNLFLHYAFDLWMDRTHPDLPWCRYADDGLVHCRSEQE  241
            D+  R+ R+ GTPQGGV+SP+L NLF+HYAFD WM+RT P+ P  RYADD++VHCRS ++
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEAVKAALQARLAECQLEMHPTKTKIVYCRDSKRRGQHPNVTFDFLGYCFRPRAVWGTQS  301
            AE V  ++ +RLA C L MHP K+K+VYC+DS+RR+  P+V+F FLG+ FRPR   + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  GRLFCGFTPAVSSSALKAMREKIRDLHIRRQTQLSLNDIARLINPLLRGWISYYGRYAPT  361
            ++LF +F P+ S+ ALK MR+ +R  ++ RQT+++L D+ARL NP+++GW  YYG +  T
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  GLQPILRYVNQTMLAWarrkfkrfgrgkaraSRFLQRLVEQRTDLFVHWQLG  413
            ++  I++ +++++  WARRK+K + R K R S+ L+++      LF HW++ 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

84) C770_GR4pD0592 in NC_019849


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  395 bits (1487),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 230/412 (56%), Positives = 316/412 (77%), Gaps = 2/412 (0%)

Query  3    SADTTDKPFRIDKRLVYEAYKAVKSNGGAAGVDGQTIEQFEADLKGNLYKIWNRMSSGSY  62
            S+ ++ KP+ I KR V +AY+ V++N GAAG+D++TI +FE DL  NLYK+WNRMSSGSY
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVPIPKKTGGQRILGVPTVSDRIAQMVVKQLIEPELDQIFLKDSYGYRPNKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK LIEPELD IF  DSYGYRP +SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGITRQRCWKYDWVLEFDIKGLFDNISHELLLKAVRKHVKCKWALLYIERWLTAPMEQ  182
            +AV+ITR+RCW+YDWV+EFDIK+ FD+I+H LL+KAVR H+K  W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  DEQ-RIERDCGTPQGGVISPILSNLFLHYAFDLWMDRTHPDLPWCRYADDGLVHCRSEQE  241
            D+  R+ R+ GTPQGGV+SP+L NLF+HYAFD WM+RT P+ P  RYADD++VHCRS ++
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEAVKAALQARLAECQLEMHPTKTKIVYCRDSKRRGQHPNVTFDFLGYCFRPRAVWGTQS  301
            AE V  ++ +RLA C L MHP K+K+VYC+DS+RR+  P+V+F FLG+ FRPR   + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  GRLFCGFTPAVSSSALKAMREKIRDLHIRRQTQLSLNDIARLINPLLRGWISYYGRYAPT  361
            ++LF +F P+ S+ ALK MR+ +R  ++ RQT+++L D+ARL NP+++GW  YYG +  T
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  GLQPILRYVNQTMLAWarrkfkrfgrgkaraSRFLQRLVEQRTDLFVHWQLG  413
            ++  I++ +++++  WARRK+K + R K R S+ L+++      LF HW++ 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

85) C770_GR4pD1533 in NC_019849


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  395 bits (1487),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 230/412 (56%), Positives = 316/412 (77%), Gaps = 2/412 (0%)

Query  3    SADTTDKPFRIDKRLVYEAYKAVKSNGGAAGVDGQTIEQFEADLKGNLYKIWNRMSSGSY  62
            S+ ++ KP+ I KR V +AY+ V++N GAAG+D++TI +FE DL  NLYK+WNRMSSGSY
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVPIPKKTGGQRILGVPTVSDRIAQMVVKQLIEPELDQIFLKDSYGYRPNKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK LIEPELD IF  DSYGYRP +SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGITRQRCWKYDWVLEFDIKGLFDNISHELLLKAVRKHVKCKWALLYIERWLTAPMEQ  182
            +AV+ITR+RCW+YDWV+EFDIK+ FD+I+H LL+KAVR H+K  W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  DEQ-RIERDCGTPQGGVISPILSNLFLHYAFDLWMDRTHPDLPWCRYADDGLVHCRSEQE  241
            D+  R+ R+ GTPQGGV+SP+L NLF+HYAFD WM+RT P+ P  RYADD++VHCRS ++
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEAVKAALQARLAECQLEMHPTKTKIVYCRDSKRRGQHPNVTFDFLGYCFRPRAVWGTQS  301
            AE V  ++ +RLA C L MHP K+K+VYC+DS+RR+  P+V+F FLG+ FRPR   + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  GRLFCGFTPAVSSSALKAMREKIRDLHIRRQTQLSLNDIARLINPLLRGWISYYGRYAPT  361
            ++LF +F P+ S+ ALK MR+ +R  ++ RQT+++L D+ARL NP+++GW  YYG +  T
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  GLQPILRYVNQTMLAWarrkfkrfgrgkaraSRFLQRLVEQRTDLFVHWQLG  413
            ++  I++ +++++  WARRK+K + R K R S+ L+++      LF HW++ 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

86) C770_GR4pD1537 in NC_019849


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  395 bits (1487),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 230/412 (56%), Positives = 316/412 (77%), Gaps = 2/412 (0%)

Query  3    SADTTDKPFRIDKRLVYEAYKAVKSNGGAAGVDGQTIEQFEADLKGNLYKIWNRMSSGSY  62
            S+ ++ KP+ I KR V +AY+ V++N GAAG+D++TI +FE DL  NLYK+WNRMSSGSY
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVPIPKKTGGQRILGVPTVSDRIAQMVVKQLIEPELDQIFLKDSYGYRPNKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK LIEPELD IF  DSYGYRP +SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGITRQRCWKYDWVLEFDIKGLFDNISHELLLKAVRKHVKCKWALLYIERWLTAPMEQ  182
            +AV+ITR+RCW+YDWV+EFDIK+ FD+I+H LL+KAVR H+K  W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  DEQ-RIERDCGTPQGGVISPILSNLFLHYAFDLWMDRTHPDLPWCRYADDGLVHCRSEQE  241
            D+  R+ R+ GTPQGGV+SP+L NLF+HYAFD WM+RT P+ P  RYADD++VHCRS ++
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEAVKAALQARLAECQLEMHPTKTKIVYCRDSKRRGQHPNVTFDFLGYCFRPRAVWGTQS  301
            AE V  ++ +RLA C L MHP K+K+VYC+DS+RR+  P+V+F FLG+ FRPR   + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  GRLFCGFTPAVSSSALKAMREKIRDLHIRRQTQLSLNDIARLINPLLRGWISYYGRYAPT  361
            ++LF +F P+ S+ ALK MR+ +R  ++ RQT+++L D+ARL NP+++GW  YYG +  T
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  362  GLQPILRYVNQTMLAWarrkfkrfgrgkaraSRFLQRLVEQRTDLFVHWQLG  413
            ++  I++ +++++  WARRK+K + R K R S+ L+++      LF HW++ 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

87) Paes_2104 in NC_011059


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  395 bits (1486),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 223/406 (55%), Positives = 309/406 (77%), Gaps = 0/406 (0%)

Query  2    TKSFEISRKLVWEAYQCVKANEGAAGVDHETIEQFDRHLKDNLYKIWNRMSSGSYFpppv  61
            +K+++I+++ VW+AYQ V+AN GAAG+D+ETI +F+R+L  NLYK+WNRMSSGSYFPPPV
Sbjct  7    AKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPV  66

Query  62   ksvpipkksGGERVLGIPTVSDRIAQTVVKLMLEPILDPLFHKNSYGYRPGRSALDAVAM  121
            K V IPK SGG R LG+PTV+DR+AQTVVKL++EP LD++FH +SYGYRPGRSA +AVA+
Sbjct  67   KQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAI  126

Query  122  VRRRCWEYDWVVEFDIKGLFDNIDHDLLMRALRKHCETPWILLYVKRWLKAPMQTATGAI  181
             R RCW YDWVVEFDIK+ FD+I+H+LLM+A+R H    WILLY+ RWL AP +T  G  
Sbjct  127  TRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMR  186

Query  182  VERSSGTPQGGVVSPLLANLFLHYAFDMWVTQNLRSVRFCRYADDGVIHCKSREQAELVL  241
            V R  GTPQGGV+SPLL NLF+HYAFD W+ +   +  F RYADD+V+HC+SR QAE V+
Sbjct  187  VPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVM  246

Query  242  HKIRKRFEQCKLELHPDKTRIAYCQDVNRQEAYPNVQFTFLGYTFRPRRSVDKYGRLYVN  301
            + I  R+  C L +HP+K+++ YC+D NR+ +YP+V FTFLG+TFRPR+++ K ++L+ +
Sbjct  247  RSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTS  306

Query  302  FSPAVSRDALKAMRQTIRGWHIQLRCDRNLQELAARFNAVLRGWHCYYGKFHGSAMSVIW  361
            F P+ S DALK MRQ++R W+++ + +  L ++A  +N+V++GW  YYG F  +AM  I 
Sbjct  307  FLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIF  366

Query  362  RHMNMYLARWLMRKYKHLAGHKTRATKALGKLAQSFPNEFVHWQLG  407
            +H++  L RW  RKYK L  +K R ++ L+K+    P  F HW++ 
Sbjct  367  QHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

88) BJ6T_78030 in NC_017249


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  393 bits (1477),  Expect = 1e-110, Method: Compositional matrix adjust.
 Identities = 217/411 (53%), Positives = 304/411 (74%), Gaps = 1/411 (0%)

Query  1    MNSGKPLPITKRMVWEAYKLVKKGK-AAGVDGQSLEDFAGDLENHRYRLWNRLVSGSYFP  59
            ++S+KP  I+KR VW+AY+ V+  + AAG+D++++ DF  DL ++ Y+LWNR+ SGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  60   PPVRRVEIPKAGGGIRPLGIPTVADRIAQMVVKRCLEPVLDGEFDPDSYGYRPGKSAHQA  119
            PPV++VEIPKA+GG R LG+PTV+DR+AQ VVK  +EP LD+ F++DSYGYRPG+SA QA
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  120  IEQARKRCWQHDWVVDLDIKSFFDTIDHELLMRAVYRHTKADWIRLYIERWLKAPVEMPD  179
            +  +R RCW+ DWVV++DIK+ FD I+H LLM+AV  H K DWI LYIERWL AP E  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  180  GSVRARTTGRSQGGVVSPILANLFLHYVFDVWMKGSYPHIPFERYADDIICHCRTRQEAE  239
            G   +R  G +QGGV+SP+L NLF+HY FD WM+ + P+ PF RYADD + HCR+R++AE
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  240  ELKSALERRFADCHLLLHPEKTKVVYCADSNRRRSYPQIHFDFLGFSFRPRMAKNRWGRI  299
             +  ++  R+A C L +HPEK+KVVYC DSNRR +YP++ F FLGF+FRPR A ++ +++
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  300  FTCFLPGVSPNSLKEMRARIRGWRLPQHSPLPLEDIARSLSPVLRGWDQYYGRFYPTELR  359
            FT FLPG S+++LK MR  +R WRL +++ + L D+AR  +PV++GW QYYG FY T + 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  360  RLYEYFDERLGAWLRCKYKQLKGHRGRSLRKLNEMAKQNPKLFVHWQKLGR  410
             +++ +D  L  W R KYK L  ++ R  + L+ M    P+LF HW+  G+
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQ  414

89) SN31241_6570 in NC_021902


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  393 bits (1478),  Expect = 9e-111, Method: Compositional matrix adjust.
 Identities = 216/403 (54%), Positives = 300/403 (75%), Gaps = 0/403 (0%)

Query  15   PKPFMISKIAVWKAYQRIRANRGSPGVDGQTIETFEGNLSGNLYKLWNRMASGSYMPPPV  74
            +KP+ I+K +VW AYQ++RANRG++G+D++TI  FE +LS NLYKLWNRM+SGSY PPPV
Sbjct  7    AKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPV  66

Query  75   RRVEIPKATGGTRPLGIPTVADRIAQMVVKDVLEPILEPHFHNDSYGYRPHKSAHDALRA  134
            ++VEIPKA+GGTR LG+PTV+DR+AQ VVK ++EP L++ FH+DSYGYRP +SA +A+  
Sbjct  67   KQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAI  126

Query  135  ARHRCWRSNWVLDVDIKGFFDNIDHDLLMKAVCKHTRCKWTELYIRRWLTAPVQMPDGTL  194
            +R+RCWR +WV++ DIK+ FD+I+H+LLMKAV  H +  W  LYI RWL AP +  DG  
Sbjct  127  TRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMR  186

Query  195  HARDRGTPQGGVISPLLANLFLHYAFDLWMTRQYPDRPFERYADDIVIHCNSQAQAIVLR  254
             +R+RGTPQGGV+SPLL NLF+HYAFD WM R  P+ PF RYADD V+HC S+ QA  + 
Sbjct  187  VPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVM  246

Query  255  NKLEHRLAECKLELSQSKTKIVYCKDGKRRENYPDISFDFLGYTFRPRKARAKDGVKFLS  314
              +  RLA C L +   K+K+VYCKD++RR  YP++SF FLG+TFRPRKA +K++  F S
Sbjct  247  RSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTS  306

Query  315  FMPAISGKASKMIRQTIRGWKWKQRTTLTAEEVARRINPILRGWITYYECFYRSALYPVL  374
            F+P+ S+ A K +RQ++R W+ +++T +T  +VAR  NP+++GW  YY  FYR+A+  ++
Sbjct  307  FLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIF  366

Query  375  AHVDLHFAKWLADKYKRLRGSRKRAFLLLKHIRRKRPGLFVHW  417
             H+D  + +W   KYK L+  ++R    L  +R   P LF HW
Sbjct  367  QHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

90) blr2052 in NC_004463


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  390 bits (1468),  Expect = 5e-110, Method: Compositional matrix adjust.
 Identities = 216/411 (53%), Positives = 302/411 (74%), Gaps = 1/411 (0%)

Query  1    MKSGKPLPITKRMVWEAYKLVKKGK-AAGVDGQSLEDFAGDLENHRYRLWNRLVSGSYFP  59
            + S+KP  I+KR VW+AY+ V+  + AAG+D++++ DF  DL ++ Y+LWNR+ SGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  60   PPVRRVEIPKAGGGIRPLGIPTVADRIAQMVVKRCLEPVLDGEFDPDSYGYRPGKSAHQA  119
            PPV++VEIPKA+GG R LG+PTV+DR+AQ VVK  +EP LD+ F++DSYGYRPG+SA QA
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  120  IEQARKRCWQHDWVVDLDNKSFFDTIDHELLMRAVYRHTKADWIRLYIERWLKAPVEMPD  179
            +  +R RCW+ DWVV++D K+ FD I+H LLM+AV  H K DWI LYIERWL AP E  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  180  GSVRARTTGRSQGGVVSPILANLFLHYVFDVWMKGSYPHIPFERYADDIICHCRTRQEAE  239
            G   +R  G +QGGV+SP+L NLF+HY FD WM+ + P+ PF RYADD + HCR+R++AE
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  240  ELKSALERRFADCHLLLHPEKTKVVYCADSNRRRSYPQIHFDFLGFSFRPRMAKNRWGRI  299
             +  ++  R+A C L +HPEK+KVVYC DSNRR +YP++ F FLGF+FRPR A ++ +++
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  300  FTCFLPGVSPNSLKEMRARIRGWRLPQHSPLPLEDIARSLSPVLRGWDQYYGRFYPTELR  359
            FT FLPG S+++LK MR  +R WRL +++ + L D+AR  +PV++GW QYYG FY T + 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  360  RLYEYFDERLGAWLRCKYKQLKGHRGRSLRKLNEMAKQNPKLFVHWQKLGR  410
             +++ +D  L  W R KYK L  ++ R  + L+ M    P+LF HW+  G+
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQ  414

91) Cvib_0153 in NC_009337


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  390 bits (1468),  Expect = 6e-110, Method: Compositional matrix adjust.
 Identities = 225/406 (56%), Positives = 308/406 (76%), Gaps = 0/406 (0%)

Query  2    TKSFEISKKLVWEAYQCVKANEGAAGVDHETIEQFDRHLKDNLYKIWNRMSSGSYFpppv  61
            +K+++I+K+ VW+AYQ V+AN GAAG+D+ETI +F+R+L  NLYK+WNRMSSGSYFPPPV
Sbjct  7    AKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPV  66

Query  62   kgvpipkksggERMLGIPTVSDRIAQTVVKLKLEPILEPLFHQNSYGYRPGRSALDAVAM  121
            K V IPK SGG R LG+PTV+DR+AQTVVKL +EP L+++FH +SYGYRPGRSA +AVA+
Sbjct  67   KQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAI  126

Query  122  VRRRSWEYDWVVEFDIKGLFDNIDHDLLMRALRKHCETPWILLYVERWLKAPMQTAVGAI  181
             R R W YDWVVEFDIK+ FD+I+H+LLM+A+R H    WILLY+ERWL AP +T  G  
Sbjct  127  TRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMR  186

Query  182  VERTSGTPQGGVVSPLLANLFLHYAFDMWVTQNLRSVRFCRYADDGVIHCKSREQAEFAL  241
            V R  GTPQGGV+SPLL NLF+HYAFD W+ +   +  F RYADD+V+HC+SR QAE+ +
Sbjct  187  VPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVM  246

Query  242  RKIRKRFEQCRLELHPDKTRIAYCQDVNRQEAYPNVQFTFLGYTFRPRRSVDKYGRLYVN  301
            R I  R+  C L +HP+K+++ YC+D NR+ +YP+V FTFLG+TFRPR+++ K ++L+ +
Sbjct  247  RSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTS  306

Query  302  FSPAVSRDALKAMRQTIRGWHIQLRCDRNLQDLAARFNAVLRGWNGYYGKFYGSAMSVIW  361
            F P+ S DALK MRQ++R W+++ + +  L D+A  +N+V++GW  YYG FY +AM  I 
Sbjct  307  FLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIF  366

Query  362  RHMNMYLMRWLMRKYKHLAGHKTRARKALGKLAQSFPNEFVHWQLG  407
            +H++  L RW  RKYK L  +K R  + L+K+    P  F HW++ 
Sbjct  367  QHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

92) XNC1_1809 in NC_014228


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  390 bits (1467),  Expect = 7e-110, Method: Compositional matrix adjust.
 Identities = 205/373 (55%), Positives = 298/373 (80%), Gaps = 0/373 (0%)

Query  51   VKSAKPFPVSKRQVWEAYKRVKANRGAAGIDGQTLAGFDENVADNLYKLWNRLASGSYMP  110
            V SAKP+ ++KR VW+AY++V+ANRGAAGID++T+A+F+ +++ NLYKLWNR++SGSY P
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  111  QAVRRVEIPKADGGVRPLGIPAVSDRIAQMVVKQVLEPVLEPLFHADSYGYRPGKSAHQA  170
             +V++VEIPKA GG R LG+P+V+DR+AQ VVK ++EP L+++FH+DSYGYRPG+SA QA
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  171  IAQARTRCWKFDWVVEIDIKGFFDNIAHALLLKAVRHHTQERWLVMYIELWLKAPVQMPD  230
            +A +R RCW++DWVVE+DIK+ FD+I H+LL+KAVR H +E W+++YIE WL AP +  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  231  GRVQVRNRGTPQGGVISPLISNLFLHYAFDMWMKRQFPGVPFERYADDVVCHCHSQSQAE  290
            G    R+RGTPQGGV+SPL+ NLF+HYAFD WM+R  P  PF RYADD V HC+S+ QAE
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  291  ALISKAGQRFAQCGLELHPQKTRMVYCKDADRRGNYAETRFDFLGYTFRPRLSKNRWGKT  350
             ++   + R+A CGL +HP+K+++VYCKD++RR+ Y++  F FLG+TFRPR + ++ ++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  351  FVNFSPGMSARAGKAIRQEVRSWGLQNRSDKSLYDLAHMFNAKIRGWINYYGAFYKSALY  410
            F +F PG SA A K +RQ VR W L+ +++ +L D+A+++N+ I+GW +YYG+FY++A+ 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  411  PTLRQIDRKLVLW  423
              +++IDR L  W
Sbjct  364  GIFQHIDRALERW  376

93) Theba_1599 in NC_017934


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  389 bits (1464),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 213/405 (53%), Positives = 307/405 (76%), Gaps = 1/405 (0%)

Query  7    RSYEIPKKVVLEAFKKVKENRGAEGIDEVSLKEFEADLDNNLYKIWNRMSSGSYFPPPVK  66
            ++Y+I+K+ V +A+++V+ NRGA GID+ ++ +FE DL +NLYK+WNRMSSGSYFPPPVK
Sbjct  8    KPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVK  67

Query  67   AIEIEKKSGGKRVLGIPTVGDRVAQMVAKIYLNPLVDPYFHKDSYGYREGKSAIDALEVT  126
             +EI K SGG R LG+PTVGDRVAQ V K+ ++P +D+ FH DSYGYR G+SA +A+ +T
Sbjct  68   QVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAIT  127

Query  127  RQRCWQYDWVLEFDIKGLFDNIDHELLMRAVKKHVKIPWLILYIERWLKAPFMQANGRVE  186
            R+RCW+YDWV+EFDIK+ FD+I+H LLM+AV+ H+K  W++LYIERWL APF   +G   
Sbjct  128  RERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRV  187

Query  187  ERSKGTPQGGVISPVLANLFMHYAFDKWMERTHPDKPFARYADDGVIHCRTleearllle  246
             R +GTPQGGV+SP+L NLFMHYAFD WM+RT P+ PFARYADD+V+HCR+  +A  ++ 
Sbjct  188  PRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMR  247

Query  247  slkerleecklelHPEKTRIVYCKDDKRKDEYPNTSFDFLGYTFRVRSCKARNGRIFYSF  306
            S+  RL  C L +HPEK+++VYCKD +R+  YP+ SF FLG+TFR R   ++++++F SF
Sbjct  248  SIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSF  307

Query  307  TPAVSEQAKKAMRQKIRRMRLQTKSYLSIEELSERINPVIRGWINYYGHFRRFEMYTVLS  366
             P+ S +A K MRQ +RR RL+ ++ +++ +++   NPVI+GW +YYG F R  M  ++ 
Sbjct  308  LPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQ  367

Query  367  RLNKALVQWVRNKYKK-RRGRTKAGKWLETLARREPRLFVHWTMG  410
            ++++AL +W R KYK  +R + + ++WL+ +    PRLF HW + 
Sbjct  368  HIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

94) BT_2615 in NC_004663


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  388 bits (1461),  Expect = 2e-109, Method: Compositional matrix adjust.
 Identities = 203/409 (50%), Positives = 296/409 (73%), Gaps = 0/409 (0%)

Query  4    DNAKPISISKQLVYDAFLRVKANRGSAGIDKVTLEDYEKNLRGNLYKLWNRMSSGSYFPP  63
             +AKP  I+K+ V DA+ +V+ANRG+AGID  T+ D+E++L  NLYKLWNRMSSGSYFPP
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  64   SVKLVEIPKSTGGKRPLGIPTVSDRVAQMAVVMLITPSIEPCFHEDSYAYRPHRSAHDAV  123
            +VK VEIPK++GG R LG+PTV+DRVAQ  V +LI P +++ FH DSY+YRP RSA +AV
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  124  GKARERCWKYAWVLDMDISKFFDTIDHELLLKALKRHTQEKWVLMYIERWLKVPYEKSDG  183
            + +RERCW+Y WV++ DI   FD I+H LL+KA++ H +E W+L+YIERWL  P+E  DG
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  184  SQVDRALGVPQGSVIGPVLANLFLHYTFDKWMEKNFPRVPFERYADDTICHCHSLKQAEY  243
             +V R  G PQG+V++P+L NLF+HY+FD WM++  P  PF RYADD++ HC+S KQAEY
Sbjct  185  MRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEY  244

Query  244  MQAMIQQRFECCRLRLNEEKTKIVYCKSSRQKECYPNVTFDFLGFTFQPRESVDKYGNRF  303
            +   I  R+  C L ++ EK+K+VYCK S ++  YP+V+F FLGFTF+PR ++ K ++ F
Sbjct  245  VMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLF  304

Query  304  TGFLPAISRKSMKRINETMRSWHLNRHSNLTLEHLASDINPIVRGWMTYYGKFYPTRLKW  363
            T+FLP+ S  ++KR+ +++R W+LNR++++TL ++A   NP+++GW  YYG FY T +  
Sbjct  305  TSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLG  364

Query  364  FMQTLNGRLARWVMCKFERYRHRFYPAQEWLARIAEKEGLIFYHWKCGA  412
            + Q ++  L RW   K+   ++R     +WL ++      +F HW+  +
Sbjct  365  IFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTG  413

95) Cpha266_1481 in NC_008639


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  387 bits (1456),  Expect = 5e-109, Method: Compositional matrix adjust.
 Identities = 218/416 (53%), Positives = 312/416 (75%), Gaps = 1/416 (0%)

Query  2    TKPYEISKHLVLESYRTVKANRGGAGVDQESIEAFEKNLKGNLYKLWNRLSSGSYFpppv  61
            +KPY+I+K+ V ++Y+ V+ANRG+AG+D+E+I  FE++L  NLYKLWNR+SSGSYFPPPV
Sbjct  7    AKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPV  66

Query  62   kgvgipkktggiRMLGVPTVADRVAQTVGKETLEPLLEPIFHQDSYGYRPGRSALDAVGV  121
            K V IPK +GG R LGVPTV+DRVAQTV K  +EP L++IFH DSYGYRPGRSA +AV++
Sbjct  67   KQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAI  126

Query  122  VRERCWKYDWVVEFDISKFFDTMNHELLMRAVRKHCQIEWVLLYVERWLKAPMMSPEGDL  181
             RERCW+YDWVVEFDI   FD +NH LLM+AVR H + +W+LLY+ERWL AP  + +G  
Sbjct  127  TRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMR  186

Query  182  VERTKGTPQGGVISPLLANLFLHYAFDRWVSENLPGVPFCRYADDGVLHCKSKEQAVLVM  241
            V R +GTPQGGV+SPLL NLF+HYAFD W+    P  PF RYADD+V+HC+S+ QA  VM
Sbjct  187  VPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVM  246

Query  242  KKITKRFEACGLRVNPDKTRIVYCKDDKRKEDHPVTSFTFLGYTFRPRQVKDKHGRIFVG  301
            + I+ R+ ACGL ++P+K+++VYCKD +R+ + P  SFTFLG+TFRPR+   K++++F +
Sbjct  247  RSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTS  306

Query  302  FTPAVSSGSLKTMRRTIRSWHLQLKSDKQIEELSKAIDPVLRGWKNYFCRFNASAMKPVW  361
            F P+ S+++LK MR+++R W+L+ +++  + ++++  +PV++GW +Y+  F  +AM  + 
Sbjct  307  FLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIF  366

Query  362  HHVNLYLTRWLMRKYQKYAGRLKRAVGVLERIARAKPSAFVHWKLGCIPKGWIMGA  417
            +H++  L RW  RKY+    R +R    L+++    P  F HW++    +GWI GA
Sbjct  367  QHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTG-QQGWITGA  421

96) Theba_1674 in NC_017934


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  387 bits (1455),  Expect = 6e-109, Method: Compositional matrix adjust.
 Identities = 211/405 (53%), Positives = 306/405 (76%), Gaps = 1/405 (0%)

Query  2    RSYEIPKKVVLEAFKKVKENRGAEGIDEVSLEEFEADLDNNLYKIWNRMTSGSYFPPPVK  61
            ++Y+I+K+ V +A+++V+ NRGA GID+ ++ +FE DL +NLYK+WNRM+SGSYFPPPVK
Sbjct  8    KPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVK  67

Query  62   AIEIEKKSGGKRVLGIPTVGDRVAQMVAKIYLNPLVDPYFHKDSYGYREGKSAIDALEVT  121
             +EI K SGG R LG+PTVGDRVAQ V K+ ++P +D+ FH DSYGYR G+SA +A+ +T
Sbjct  68   QVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAIT  127

Query  122  RQRCWRYDWVLEFDIKGLFDNIDHELLMRAVKKHVKIPWLILYIGRWLKAPFMQANGRVE  181
            R+RCWRYDWV+EFDIK+ FD+I+H LLM+AV+ H+K  W++LYI RWL APF   +G   
Sbjct  128  RERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRV  187

Query  182  ERSKGTPQGGVISPVLANLFMHYAFDKWMERTHPDKPFARYADDGVIHCRTleearllle  241
             R +GTPQGGV+SP+L NLFMHYAFD WM+RT P+ PFARYADD+V+HCR+  +A  ++ 
Sbjct  188  PRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMR  247

Query  242  slkerleecklelHPEKTRIVYCKDDKRKGEYPNTSFDFLGYTSRVRSCKARNGRIFYSF  301
            S+  RL  C L +HPEK+++VYCKD +R++ YP+ SF FLG+T R R   ++++++F SF
Sbjct  248  SIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSF  307

Query  302  TPAVSEQAKKAMRQKIRRMRLQTKSYLSIEELSERINPVIRGWINYYGHFRRFEMYTVLS  361
             P+ S +A K MRQ +RR RL+ ++ +++ +++   NPVI+GW +YYG F R  M  ++ 
Sbjct  308  LPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQ  367

Query  362  QLNKALVQWVRNKYKK-RRGRTKAGKWLETLARREPRLFVHWTMG  405
            ++++AL +W R KYK  +R + + ++WL+ +    PRLF HW + 
Sbjct  368  HIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

97) wNo_02130 in NC_021084


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  385 bits (1447),  Expect = 3e-108, Method: Compositional matrix adjust.
 Identities = 196/412 (48%), Positives = 296/412 (72%), Gaps = 5/412 (1%)

Query  1    MNKTKSFDIPKQLIWKAYKQVSKNRGAAGVDEVSITKFEENLKDNLYKLWNRMSSGSYFP  60
            ++ +K++DI+K+ +W AY+QV  NRGAAG+D+ +I+ FE +L  NLYKLWNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   ESVKAVAIPKDTGGQRTLCVPSVFDRIGQTAATMYLEPLVEPEFHEDSYGYRPNKSALDA  120
             +VK V IPK +GG R L VP+V DR++QT   + +EP +++ FH DSYGYRP +SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VSTACKRCWRSDWMIDLDISGFFDNLDHVLALQTIKKHTDCKWVILYVERWMKAPIQLAD  180
            V+ +  RCWR DW++++DI + FD+++H L +++++ H    W++LY+ERW+ AP++  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GSKVVRNKGVPQGGSVSPIISNIFMHHAFDMWMRQNYPTIPFERYVDDAMVHCKTQKQAK  240
            G +V R++G PQGG +SP++ N+FMH AFD WM++  P  PF RY DDA+VHC+++KQA 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  FIKDKIEERLAEFKLKLHPEKTQIVYCKDDNRRDEFPIQSFDFLGYTFRPR--LAKNNKI  298
            ++   I  RLA   L +HPEK+++VYCKD NRR  +P  SF FLG+TFRPR  L+K++++
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  299  GNYFVSFLPAISNKAKKKINQTIRSWKIRRQTYTTLEKISKKINPIVRGWYQYYGRFYKS  358
               F SFLP+ S  A K++ Q++R W++ RQT  TL  +++  NP+++GW QYYG FY++
Sbjct  304  ---FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  359  EMYPSLRNVEWHLVGWVRAKYKKLRNHRRLAKQFLAKVRKRSPNIFYHWTLG  410
             M   ++++++ L  W R KYK L+ ++R   Q L K+R   P +F HW + 
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

98) MCAN_35791 in NC_015848


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  383 bits (1439),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 208/406 (52%), Positives = 311/406 (77%), Gaps = 2/406 (0%)

Query  6    SPGKPFEISKWAVQEAWEKVRANKGAPGVDGVSIEAFEADLGNNLYKVWNRMSSGSYFPP  65
            S++KP++I+K++V +A ++VRAN+GA+G+D+ +I  FE DL++NLYK+WNRMSSGSYFPP
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  66   PVRAVEIPKPHGGGTRMLGIPTIADRVAQTVVAEELTSRVEVIFHDDSHGYRPGRSALDA  125
            PV+ VEIPK+ +GGTR LG+PT++DRVAQTVV   + + ++ IFH DS GYRPGRSA +A
Sbjct  65   PVKQVEIPKA-SGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  126  VKACRQRCWKTDWVIDLDIQKFFDDVSWDLMLKAVAANTDLPWVMLYVRRWLQAPVALPD  185
            V   R+RCW+ DWV+++DI+  FD+++ +L++KAV  +    W++LY+ RWL AP    D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  186  GTLQRRDRGTPQGSPVSPVLANLFLHYAFDTWMAREFPSVRFERYVDDAVVHCVTERQAR  245
            G    R+RGTPQG+ +SP+L NLF+HYAFDTWM R  P+  F RY DDAVVHC + +QA 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  246  QVLAALQGRMVEVGLRLHPDKTRIVYCKDGKRRGGYEHTSFTFLGFTFRARGARTKDGRM  305
             V+ ++ +R+   GL +HP+K+++VYCKD++RR+GY H SFTFLGFTFR+R A +K++++
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  306  FLSFLPAISKDALTRISREVRSWRLHRRSGSSFGDLARWINPIVRGWLDYYGAFYRSALY  365
            F SFLP+ S DAL R+ + VR WRL+R++  ++ D+AR  NP+++GW +YYG+FYR+A+ 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  366  PLLTRINAYLMRWVRKKYRRLQGRRQFQQAW-QRVTAQYPQFFAHW  410
             ++ +I+  L RW R+KY+ L+ R++    W +++ +  P++F HW
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

99) SFUL_6974 in NC_021177


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  380 bits (1429),  Expect = 7e-107, Method: Compositional matrix adjust.
 Identities = 217/416 (53%), Positives = 314/416 (76%), Gaps = 2/416 (0%)

Query  6    ASEKSFAISKWEVWEAWEKVRANKGAPGVDGCTIEEFEKDLRGNLYKVWNRMSSGSYFPP  65
            +S K++ I+K+ VW+A ++VRAN+GA+G+D+ TI +FE+DL  NLYK+WNRMSSGSYFPP
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  66   PVRAVEIPKSHGGVRILGVPTVADRIAQTVVAARLERNVEPVFHSDSFGYRPGRSALDAV  125
            PV+ VEIPK+ GG R LGVPTV+DR+AQTVV   +E +++++FHSDS+GYRPGRSA +AV
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  126  EKCRERTWKRDWVVDLDIQKFFDSVPWSLIVKAVEAHADAVWVKLYVERWLRAPLQLPDG  185
               RER W+ DWVV++DI+  FD +  +L++KAV  H    W+ LY+ERWL AP++  DG
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  186  TLQRRDRGTPQGSAVSPVLANLFLHYAFDMWIAREFPDIPFERYVDDAVVHCVSERQARR  245
                R+RGTPQG+ +SP+L NLF+HYAFD W+ R  P+ PF RY DDAVVHC S +QA  
Sbjct  185  MRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEY  244

Query  246  LVEAIGNRMEEVGLRLHPAKTRIVYCKDANRRGAYAQTSFTFLGFTFRARAARSRHGVTF  305
            ++ +I++R+   GL +HP K+++VYCKD+NRR++Y++ SFTFLGFTFR+R A S+++  F
Sbjct  245  VMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLF  304

Query  306  RCFLPAVSKDALKRMSAEVRSWRIHRRTRHTFAQLARFINPIVRGWIQYYGAYYRSALEP  365
              FLP+ S DALKRM   VR WR++R+T+ T+ ++AR+ NP+++GW QYYG++YR+A+  
Sbjct  305  TSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLG  364

Query  366  LLRRINAYLVRWIRRKYKRLAGFK-KAKECFQGITQRYPGMFFHWRF-ARHFWCSG  419
            ++++I+  L RW RRKYK L   K +  + ++ +    P +F HWR  +++ W +G
Sbjct  365  IFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQGWITG  420

100) Mmc1_0653 in NC_008576


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  378 bits (1422),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 209/420 (50%), Positives = 304/420 (73%), Gaps = 4/420 (0%)

Query  1    MNATKAFDIPKELVWQAYLDVKRSSGGPGLDGLTMEAFEEDLKNQLYRLWNRMSSGSYFP  60
            ++++K++DI+K  VW+AY +V+ + G++G+D+ T+  FE DL ++LY+LWNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PPVMRVEIPKSDGGVRGLGIPTIGDRIAQAVVKRYLEPLVEPKFHEDSYGYRPNRSALDA  120
            PPV +VEIPK+ GG R LG+PT+GDR+AQ+VVK  +EP +++ FH DSYGYRP RSA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VRQARQRCWRDDWVLDLDISKFFDKLDHALVMRAVKRFTDCKWVLLYIERWLKADVQLQD  180
            V  +R+RCWR DWV+++DI   FD+++H+L+M+AV+      W+LLYIERWL A  + +D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  ETILHREMGTPQGGVISPLLANIFLHLGFDQWMKENYPHIHFERYADDIVVHCRSLKQLQ  240
               + RE GTPQGGV+SPLL N+F+H +FD WM+   P+  F RYADD VVHCRS KQ +
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  WIKKRIEQRLKLCKLSLNDKKTRVVYCKDSRRSGEWTCQSFDFLGYTFRPRSSRNHRGEL  300
             + + I  RL  C L+++  K++VVYCKDS R +     SF FLG+TFRPR + + +++L
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FVSFSPAISRKASKSLRQTIRREWKLQARSQHSIEELARRLNPVITGWINYYGRFCRSEM  360
            F SF P+ S  A K +RQ++RR W+L+ +++ ++ ++AR  NPVI GW +YYG F R+ M
Sbjct  304  FTSFLPGASADALKRMRQAVRR-WRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  361  HSVLDRINTALAFWAMRKFKKLRGHKTRAHKWLKGVAQREPSLFAHWKY---QGWMTRAV  417
             +++++I+ AL  WA RK+K L+ +K R  +WL  +    P LF HW+    QGW+T AV
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQGWITGAV  422

101) Mmc1_1979 in NC_008576


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  378 bits (1422),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 209/420 (50%), Positives = 304/420 (73%), Gaps = 4/420 (0%)

Query  1    MNATKAFDIPKELVWQAYLDVKRSSGGPGLDGLTMEAFEEDLKNQLYRLWNRMSSGSYFP  60
            ++++K++DI+K  VW+AY +V+ + G++G+D+ T+  FE DL ++LY+LWNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PPVMRVEIPKSDGGVRGLGIPTIGDRIAQAVVKRYLEPLVEPKFHEDSYGYRPNRSALDA  120
            PPV +VEIPK+ GG R LG+PT+GDR+AQ+VVK  +EP +++ FH DSYGYRP RSA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VRQARQRCWRDDWVLDLDISKFFDKLDHALVMRAVKRFTDCKWVLLYIERWLKADVQLQD  180
            V  +R+RCWR DWV+++DI   FD+++H+L+M+AV+      W+LLYIERWL A  + +D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  ETILHREMGTPQGGVISPLLANIFLHLGFDQWMKENYPHIHFERYADDIVVHCRSLKQLQ  240
               + RE GTPQGGV+SPLL N+F+H +FD WM+   P+  F RYADD VVHCRS KQ +
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  WIKKRIEQRLKLCKLSLNDKKTRVVYCKDSRRSGEWTCQSFDFLGYTFRPRSSRNHRGEL  300
             + + I  RL  C L+++  K++VVYCKDS R +     SF FLG+TFRPR + + +++L
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FVSFSPAISRKASKSLRQTIRREWKLQARSQHSIEELARRLNPVITGWINYYGRFCRSEM  360
            F SF P+ S  A K +RQ++RR W+L+ +++ ++ ++AR  NPVI GW +YYG F R+ M
Sbjct  304  FTSFLPGASADALKRMRQAVRR-WRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  361  HSVLDRINTALAFWAMRKFKKLRGHKTRAHKWLKGVAQREPSLFAHWKY---QGWMTRAV  417
             +++++I+ AL  WA RK+K L+ +K R  +WL  +    P LF HW+    QGW+T AV
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQGWITGAV  422

102) Dret_0626 in NC_013223


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  377 bits (1419),  Expect = 4e-106, Method: Compositional matrix adjust.
 Identities = 206/410 (51%), Positives = 305/410 (75%), Gaps = 1/410 (0%)

Query  24   EGGGKAKPFNIDKWRLVEAYRRVKANAGSAGVDRQSLEDFEKDLKNNLYKLWNRMSSGSY  83
             G + AKP++I K+ + +AY++V+AN G+AG+D +++ DFE+DL +NLYKLWNRMSSGSY
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  84   MPPLVKGVEIPKKSGGTRLLGVPAVSDRIAQMAARLEFEAQVEPHFLPDSYGYRPKKSAR  143
             PP VK VEIPK SGGTR LGVP+V+DR+AQ   +L +E+++++ F +DSYGYRP +SA+
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  144  QAIDVTRKRCWDQDWVLEFDIKGLFDNIDHDLLMKAVEKHTDNPWVRLYIRRWLKAPMQL  203
            QA+ +TR RCW  DWV+EFDIK+ FD+I+H+LLMKAV  H  + W+ LYI RWL AP + 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  204  ESGELVDRDKGTPQGGVISPVLANLFLHYVFDAWLTKHYPRVKWCRYADDGLVHCESEAQ  263
            + G  V R++GTPQGGV+SP+L NLF+HY FD+W+ +  P     RYADD++VHC S  Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  264  ARFLLEALRQRFKECGLELHPEKTKIVYCKDGRRTGDYPQTSFDFLGYTFrrrsgrdrrT  323
            A +++ ++  R+  CGL +HPEK+K+VYCKD+ R ++YP+ SF FLG+TF R      + 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTF-RPRKALSKQ  300

Query  324  GQMFLGFMPAASATSMKAMRQKIRKMRIRSHTEISLEEIAARINPVLWGWLEYHGAFYRS  383
            +Q+F +F+P+ASA ++K MRQ +R+ R+  +T+++L ++A   NPV+ GW +Y G+FYR+
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  384  EMYRLVRYVNQTLVRWAMRKFKHLRGKKTRAMQVLERVAKLRPYLFAHWK  433
             M  + + ++++L RWA RK+K L+ +K R  Q L+++  + P LF HW+
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWR  410

103) WPa_0169 in NC_010981


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  372 bits (1399),  Expect = 1e-104, Method: Compositional matrix adjust.
 Identities = 197/409 (49%), Positives = 296/409 (73%), Gaps = 0/409 (0%)

Query  1    MNKTKSFDIPKQLIWRAYKQVSKNKGAAGVDEVSITKFEENLKDNLYKLWNRMSSGSYFP  60
            ++ +K++DI+K+ +W AY+QV  N+GAAG+D+ +I+ FE +L  NLYKLWNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   EPVKAVAIPKDTGGQRILCVPSVFDRIAQTAATMYLEPLVEPKFHEDSYGYRPNKSALDA  120
             PVK V IPK +GG R L VP+V DR+AQT   + +EP +++ FH DSYGYRP +SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VYTARKRCWKNDWTVDLDISGFFDNLDHDLALQAIKKHTDCKWVILYVERWMKAPIQQAD  180
            V  +R RCW+ DW V++DI + FD+++H+L ++A++ H    W++LY+ERW+ AP++  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GSRVTRDKGVPQGGsispiissiFMHHAFDMWMKQNYPTVPFERYVDDAIVHCRTKRQAG  240
            G RV R++G PQGG +SP++ ++FMH AFD WM++  P  PF RY DDA+VHCR+++QA 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  FMKVMIEERLAKCKLKLHPEKTQIVYSKDDDRKEQFPKQSFDFLGYTFRPRVAKNKMRNY  300
            ++   I  RLA C L +HPEK+++VY KD +R+  +P  SF FLG+TFRPR A +K  + 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FISFLPAISNkakkkikktikSWRIHRITWTTLEEISKKIDPIVRGWFQYYGRFYKSEMY  360
            F SFLP+ S  A K+++++++ WR++R T  TL ++++  +P+++GW QYYG FY++ M 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  361  PSLRNIERYLIRWVRTKYKKLRDHGRLAKQFLGKVRKRSPSIFYHWTLG  409
              +++I+R L RW R KYK L+ + R   Q L+K+R   P +F HW + 
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

104) WPa_0976 in NC_010981


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  372 bits (1399),  Expect = 1e-104, Method: Compositional matrix adjust.
 Identities = 197/409 (49%), Positives = 296/409 (73%), Gaps = 0/409 (0%)

Query  1    MNKTKSFDIPKQLIWRAYKQVSKNKGAAGVDEVSITKFEENLKDNLYKLWNRMSSGSYFP  60
            ++ +K++DI+K+ +W AY+QV  N+GAAG+D+ +I+ FE +L  NLYKLWNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   EPVKAVAIPKDTGGQRILCVPSVFDRIAQTAATMYLEPLVEPKFHEDSYGYRPNKSALDA  120
             PVK V IPK +GG R L VP+V DR+AQT   + +EP +++ FH DSYGYRP +SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VYTARKRCWKNDWTVDLDISGFFDNLDHDLALQAIKKHTDCKWVILYVERWMKAPIQQAD  180
            V  +R RCW+ DW V++DI + FD+++H+L ++A++ H    W++LY+ERW+ AP++  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GSRVTRDKGVPQGGsispiissiFMHHAFDMWMKQNYPTVPFERYVDDAIVHCRTKRQAG  240
            G RV R++G PQGG +SP++ ++FMH AFD WM++  P  PF RY DDA+VHCR+++QA 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  FMKVMIEERLAKCKLKLHPEKTQIVYSKDDDRKEQFPKQSFDFLGYTFRPRVAKNKMRNY  300
            ++   I  RLA C L +HPEK+++VY KD +R+  +P  SF FLG+TFRPR A +K  + 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FISFLPAISNkakkkikktikSWRIHRITWTTLEEISKKIDPIVRGWFQYYGRFYKSEMY  360
            F SFLP+ S  A K+++++++ WR++R T  TL ++++  +P+++GW QYYG FY++ M 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  361  PSLRNIERYLIRWVRTKYKKLRDHGRLAKQFLGKVRKRSPSIFYHWTLG  409
              +++I+R L RW R KYK L+ + R   Q L+K+R   P +F HW + 
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

105) EC042_0232 in NC_017626


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  371 bits (1395),  Expect = 3e-104, Method: Compositional matrix adjust.
 Identities = 204/414 (50%), Positives = 300/414 (73%), Gaps = 1/414 (0%)

Query  1    MTKTKAFNIDKSLVVSAYRRVKTSAGAAGIDKQSLADFDKRLVDNLYKIWNRLSSGSYFP  60
            ++ +K+++I K  V  AY++V+++ GAAGID +++ADF++ L  NLYK+WNR+SSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PAVKAVAIPKKLGGERILGIPTVSDRIAQTVVKLAFEPQVEPHFLADSYGYRPNKSALDA  120
            P+VK V IPK  GG R LG+PTV+DR+AQTVVKL +EP++++ F +DSYGYRP +SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  IGVTRKRCWYYDWVLEFDIKGLFDNIPHELIMKAVDKHNPARWVKLYIQRWLTAPMVMSD  180
            +++TR RCW YDWV+EFDIK+ FD+I H L+MKAV  H    W+ LYI+RWL AP    D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GEVRARTMGTPQGGVISPLLANLFMHYVFDKWLAKYYPKVPWYRYADDGILHCHSEAEAT  240
            G   +R  GTPQGGV+SPLL NLFMHY FD W+ +  P+ P  RYADD+++HC+S  +A 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  EMREVLRKRFSECGLEMHPEKTRVIYCKDGSRKGDYEHTMFDFLGYTFrrrvvknvkrnS  300
             +   +  R++ CGL MHPEK++V+YCKD++R+++Y H  F FLG+TF R      K++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTF-RPRKALSKQDQ  302

Query  301  LFVSFTPAASKSALKAMRREIKATGIRKRVDLSIEQIAKWINPKLNGWINYYGRYTCSEL  360
            LF SF P+AS  ALK MR+ ++   + ++ ++++ ++A+  NP ++GW +YYG +  + +
Sbjct  303  LFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  361  YSVFRYINKALVRWGRKKYKMLSRYKTRASKFLEEMAKRSPQLFAHWRLKMRGG  414
             ++F+ I++AL RW+R+KYK L R K R S+ L+ M    P+LF HWR+  + G
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

106) ECUMN_0236 in NC_011751


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  371 bits (1395),  Expect = 3e-104, Method: Compositional matrix adjust.
 Identities = 204/414 (50%), Positives = 300/414 (73%), Gaps = 1/414 (0%)

Query  1    MTKTKAFNIDKSLVVSAYRRVKTSAGAAGIDKQSLADFDKRLVDNLYKIWNRLSSGSYFP  60
            ++ +K+++I K  V  AY++V+++ GAAGID +++ADF++ L  NLYK+WNR+SSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   PAVKAVAIPKKLGGERILGIPTVSDRIAQTVVKLAFEPQVEPHFLADSYGYRPNKSALDA  120
            P+VK V IPK  GG R LG+PTV+DR+AQTVVKL +EP++++ F +DSYGYRP +SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  IGVTRKRCWYYDWVLEFDIKGLFDNIPHELIMKAVDKHNPARWVKLYIQRWLTAPMVMSD  180
            +++TR RCW YDWV+EFDIK+ FD+I H L+MKAV  H    W+ LYI+RWL AP    D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GEVRARTMGTPQGGVISPLLANLFMHYVFDKWLAKYYPKVPWYRYADDGILHCHSEAEAT  240
            G   +R  GTPQGGV+SPLL NLFMHY FD W+ +  P+ P  RYADD+++HC+S  +A 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  EMREVLRKRFSECGLEMHPEKTRVIYCKDGSRKGDYEHTMFDFLGYTFrrrvvknvkrnS  300
             +   +  R++ CGL MHPEK++V+YCKD++R+++Y H  F FLG+TF R      K++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTF-RPRKALSKQDQ  302

Query  301  LFVSFTPAASKSALKAMRREIKATGIRKRVDLSIEQIAKWINPKLNGWINYYGRYTCSEL  360
            LF SF P+AS  ALK MR+ ++   + ++ ++++ ++A+  NP ++GW +YYG +  + +
Sbjct  303  LFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  361  YSVFRYINKALVRWGRKKYKMLSRYKTRASKFLEEMAKRSPQLFAHWRLKMRGG  414
             ++F+ I++AL RW+R+KYK L R K R S+ L+ M    P+LF HWR+  + G
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQG  416

107) Cycma_3603 in NC_015914


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  370 bits (1391),  Expect = 7e-104, Method: Compositional matrix adjust.
 Identities = 190/411 (47%), Positives = 302/411 (74%), Gaps = 2/411 (0%)

Query  5    NETKSIPISRQMVWEAYQKVRSNKGSAGVDAISMEEFDVDRRKHLYKLWNRMSSGSYFPP  64
            + +K+  I+++ VW+AYQ+VR+N+G+AG+D  ++ +F+ D  K+LYKLWNRMSSGSYFPP
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  65   AVKEVEIPKKDGAVRKLGVPTISDRVGQMVVKMFIEPRLEAIFSTNSYGYRPNRNAHQAL  124
            +VK+VEIPK  G+ RKLGVPT++DRV+Q VVK++IEP L++IF ++SYGYRP R+A QA+
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  125  SEVRNNCWKNNWVIDLDIKGFFDNIDHNKLMLALEKHVPEIWVKLYVRRWLEAPVVTVSG  184
            +  R+ CW+ +WV+++DIK+ FD+I+H  LM A+  H+ E W+ LY+ RWL AP  T  G
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  185  QQIEKQGKGTPQGGVISPLLANLFLHYAFDKWLEKIDKNVVFTRYADDVILHCNTKSHSE  244
             ++ ++ +GTPQGGV+SPLL NLF+HYAFD W+++   N  F+RYADD ++HC ++ ++E
Sbjct  185  MRVPRE-RGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  245  QILRLVHQRMESVGLELHPQKTKIVYCRDFRRRGKYPTVKFDFLGYSFQPRTAYSKKKGK  304
             ++R +  R+ + GL +HP+K+K+VYC+D  RR+ YP V F FLG++F+PR A S K+++
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALS-KQDQ  302

Query  305  LFIGYDCAISISSRKRIADRLEELKVNKLTFKSIVGVAQFLNPMIRGWVHYYGKFKMFEL  364
            LF ++  + S  + KR+ + +   ++N+ T  ++V+VA++ NP+I+GW +YYG F    +
Sbjct  303  LFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  365  TKVFRLLSKRLVWWARKRYKRYKTSIRKGYKWLARVRSQYPTLFYHWQFSE  415
              +F+ + + L +WAR++YK      R+  +WL ++R+  P LF HW+ + 
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTG  413

108) Cycma_1570 in NC_015914


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  369 bits (1388),  Expect = 1e-103, Method: Compositional matrix adjust.
 Identities = 190/411 (47%), Positives = 301/411 (74%), Gaps = 2/411 (0%)

Query  5    NETKSIPISRQMVWEAYQKVRSNKGSAGVDAISMEKFDVDRRKHLYKLWNRMSSGSYFPP  64
            + +K+  I+++ VW+AYQ+VR+N+G+AG+D  ++  F+ D  K+LYKLWNRMSSGSYFPP
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  65   AVKEVEIPKKDGAVRKLGVPTISDRVGQMVVKMFIEPRLEAIFSTNSYGYRPNRNAHQAL  124
            +VK+VEIPK  G+ RKLGVPT++DRV+Q VVK++IEP L++IF ++SYGYRP R+A QA+
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  125  SEVRNNCWKHNWVIDLDIKGFFDNIDHNKLMLALEKHVPEIWVKLYVRRWLEAPVVTVSG  184
            +  R+ CW+ +WV+++DIK+ FD+I+H  LM A+  H+ E W+ LY+ RWL AP  T  G
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  185  QQIEKQGKGTPQGGVISPLLANLFLHYAFDKWLEKIDKNVVFTRYADDVILHCNTKSHSE  244
             ++ ++ +GTPQGGV+SPLL NLF+HYAFD W+++   N  F+RYADD ++HC ++ ++E
Sbjct  185  MRVPRE-RGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  245  QILRLVHQRMESVGLELHPQKTKIVYCRDFRRRGKYPTVKFDFLGYSFQPRTAYSKKKGK  304
             ++R +  R+ + GL +HP+K+K+VYC+D  RR+ YP V F FLG++F+PR A S K+++
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALS-KQDQ  302

Query  305  LFIGYDCAISISSRKRIADRLEELKVNKLTFKSIVGVAQFLNPMIRGWVHYYGKFKMFEL  364
            LF ++  + S  + KR+ + +   ++N+ T  ++V+VA++ NP+I+GW +YYG F    +
Sbjct  303  LFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  365  TKVFRLLSKRLVWWARKRYKRYKTSIRKGYKWLARVRSQYPTLFYHWQFSE  415
              +F+ + + L +WAR++YK      R+  +WL ++R+  P LF HW+ + 
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTG  413

109) Cycma_3598 in NC_015914


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  369 bits (1386),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 190/411 (47%), Positives = 301/411 (74%), Gaps = 2/411 (0%)

Query  5    NETKSIPISRQMVWEAYQKVRSNKGSAGVDAISMEKFDVDRRKHLYKLWNRMSSGSYFPP  64
            + +K+  I+++ VW+AYQ+VR+N+G+AG+D  ++  F+ D  K+LYKLWNRMSSGSYFPP
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  65   AVKEVEIPKKDGAVRKLGVPTISDRVGQMVVKMFIEPRLEAIFSTNSYGYRPNRNAHQAL  124
            +VK+VEIPK  G+ RKLGVPT++DRV+Q VVK++IEP L++IF ++SYGYRP R+A QA+
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  125  SEVRNNCWKNNWVIDLDIKGFFDNIDHNKLMLALEKHVPEIWVKLYVRRWLEAPVVTVSG  184
            +  R+ CW+ +WV+++DIK+ FD+I+H  LM A+  H+ E W+ LY+ RWL AP  T  G
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  185  QQIEKQGKGTPQGGVISPLLANLFLHYAFDKWLEKIDKNVVFTRYADDVILHCNTKSHSE  244
             ++ ++ +GTPQGGV+SPLL NLF+HYAFD W+++   N  F+RYADD ++HC ++ ++E
Sbjct  185  MRVPRE-RGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  245  QILRLVHQRMESVGLELHPQKTKIVYCRDFRRRGKYPTVKFDFLGYSFQPRTAYSKKKGK  304
             ++R +  R+ + GL +HP+K+K+VYC+D  RR+ YP V F FLG++F+PR A S K+++
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALS-KQDQ  302

Query  305  LFIGYDCAISISSRKRIADRLEELKVNKLTFKSIVGVAQFLNPMIRGWVHYYGKFKMFEL  364
            LF ++  + S  + KR+ + +   ++N+ T  ++V+VA++ NP+I+GW +YYG F    +
Sbjct  303  LFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  365  TKVFRLLSKRLVWWARKRYKRYKTSIRKGYKWLARVRSQYPTLFYHWQFSE  415
              +F+ + + L +WAR++YK      R+  +WL ++R+  P LF HW+ + 
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTG  413

110) MEALZ_2163 in NC_016112


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  367 bits (1381),  Expect = 4e-103, Method: Compositional matrix adjust.
 Identities = 212/410 (52%), Positives = 305/410 (75%), Gaps = 1/410 (0%)

Query  1    MSEAKPFVISKWQVMRAFELVKANAGAAGVDRQSLADFERNLKDNLYKLWNRLSSGSYFp  60
            +S AKP+ I+K+ V  A++ V+AN GAAG+D +++ADFER+L  NLYKLWNR+SSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   ppvkavaipkkaGGERILGIPTVSDRIAQMVVKLEFEPQVEPHFLPDSYGYRPNKSALDA  120
            PPVK V IPK +GG R LG+PTV+DR+AQ VVKL +EP++++ F +DSYGYRP +SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VGVTRERCWRYDWVLEFDIKGLFDNIPHDLLLKAVYKHTDTAWVRLYIERWLTVPMQMPN  180
            V++TRERCWRYDWV+EFDIK+ FD+I H+LL+KAV  H    W+ LYIERWL  P +  +
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GELSSRGKGTPQGGVVSPVLSNLFLHYVFDKWLQKHYSDTPWCRYADDGLVHCRSEAEAK  240
            G   +R +GTPQGGV+SP+L NLF+HY FD W+Q+  ++ P  RYADD++VHCRS  +A 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  HMLEALKQRFQSCGLELHPVKTKIVYCKDGSRKGRYKHTSFDFLGYTFrrrlcrnrkrNS  300
             ++ ++  R+ +CGL +HP K+K+VYCKD++R++ Y H SF FLG+TF R      K++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTF-RPRKALSKQDQ  302

Query  301  VFVNFTPAVSKAALKSMRGKVRKLRVRTRTELSLGQIAQWLNPIIRGWIGYYGCYTRSAL  360
            +F +F P+ S  ALK MR  VR+ R+  +T+++L ++A+  NP+I+GW  YYG + R+A+
Sbjct  303  LFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  361  YGMCRHVNMTLVRWVRRKFKPLRQHKIKAMLFLEKIADQHPNLFAHWRAG  410
             G+ +H++ +L RW RRK+K+L+++K +    L+K+    P LF HWR  
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

111) ZPR_3312 in NC_014041


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  362 bits (1361),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 186/398 (47%), Positives = 291/398 (74%), Gaps = 2/398 (0%)

Query  2    IWQAYKRVRANKGSAGIDTVSIEQFDESLSKNLYKLWNRMASGSYFPPAVKEVEIPKKDG  61
            +W+AY++VRAN+G+AGID  +I +F+  LSKNLYKLWNRM+SGSYFPP+VK+VEIPK  G
Sbjct  17   VWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVKQVEIPKASG  76

Query  62   KVRKLGIPTISDRIGQMVVKMYLEPRLENVFNPNSYGYRPNKSAHQALEQVRKNCWKMDW  121
              RKLG+PT++DR++Q VVK+ +EP L+++F+++SYGYRP +SA QA+   R  CW+ DW
Sbjct  77   GTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAITRERCWRYDW  136

Query  122  VIDLDIKGFFDNIDHHKMMLAIEKHVPERWVRLYIARWLASPVMTKSGNLVSNQGRGTPQ  181
            V+++DIK+ FD+I+H  +M A+  H+ E W+ LYI RWL +P  T  G  V+ + RGTPQ
Sbjct  137  VVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRVPRE-RGTPQ  195

Query  182  GGVISPLLANLFLHYGLDKWLEQNDNTVKFTRYADDVIVNCKSQKHAEQTLEAIKSRMHQ  241
            GGV+SPLL NLF+HY++D W+++      F+RYADD +V+C+S+K+AE  + +I SR+  
Sbjct  196  GGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMRSIASRLAA  255

Query  242  IGLELHPEKTKIVYCRDYRRQEKYSNVKFDFLGYSYQPRTTKSKKSNGLYLGFDCGISIS  301
             GL +HPEK+K+VYC+D  R+  Y++V F FLG++++PR + SK+ + L+ +F  G S  
Sbjct  256  CGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQ-LFTSFLPGASAD  314

Query  302  SRKRIADKLEELKVERMTSDRIVGIAAILNPMIRGWVNYYGKFRRSMLHKVFKLLNNRIV  361
            + KR+ + +   +++R T   +V++A + NP+I+GW +YYG F R+ +  +F+ ++  + 
Sbjct  315  ALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQHIDRALE  374

Query  362  KWARKRYKRYKTSIKRAYQWFERIKEQYPKLFYHWQVG  399
            +WAR++YK      +R  QW+++++   P+LF HW+V 
Sbjct  375  RWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

112) LPV_0225 in NC_018140


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  362 bits (1360),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 213/407 (53%), Positives = 309/407 (76%), Gaps = 3/407 (0%)

Query  1    MEKTKPFNIPKQLFVQAYKLVKANAGAAGVDEESLEDFAKDLKNNLYKLWNRMSSGSYFp  60
            +  +KP++I+K+   +AY+ V+AN GAAG+D+E++ DF +DL +NLYKLWNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   pavkavpipkkSGGERMLGIPTVADRIAQMVVKLVFEPIVEPHFHPDSYGYRPNKSALDA  120
            P+VK V IPK SGG R LG+PTV+DR+AQ VVKL++EP +++ FH+DSYGYRP +SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VGITRQRCWQYDWVLEYDIRGLFDNIDHQLLMKAVRKHTDSKWVLLYIERWLVTPMQLPD  180
            V+ITR+RCW+YDWV+E+DI++ FD+I+H LLMKAVR H    W+LLYIERWLV+P +  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GTLQEKVKGVMQGGVISPVLSNLFLHYVFDSWMVRNATKMSWCRYADDGLVHCKTKFEAQ  240
            G    + +G  QGGV+SP+L NLF+HY FD+WM R + + +  RYADD++VHC+++ +A+
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  QIRRRLEARFIECGLEMHPDKTKIVYCKDSNRRLNYQNTSFDFLGFTFRPREAKNQRNGI  300
             + R + +R+  CGL MHP+K+K+VYCKDSNRR  Y + SF FLGFTFRPR A ++++ +
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  RFTSFTPaaskaamksmrakikkCRLGRRTELSIHDIVDRCNPYLRGWVNYYGQYHITEM  360
             FTSF P+AS  A+K MR  +++ RL R+T++++ D+    NP ++GW +YYG +  T M
Sbjct  304  -FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  361  ESVFRHFNQSLVKWAMRKYIRLN--KTQAIEFLSNLAKEKPRLFVHW  405
             ++F+H++++L +WA RKY  L+  K +  + L ++    PRLF HW
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

113) LPV_0897 in NC_018140


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  362 bits (1360),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 213/407 (53%), Positives = 309/407 (76%), Gaps = 3/407 (0%)

Query  1    MEKTKPFNIPKQLFVQAYKLVKANAGAAGVDEESLEDFAKDLKNNLYKLWNRMSSGSYFp  60
            +  +KP++I+K+   +AY+ V+AN GAAG+D+E++ DF +DL +NLYKLWNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   pavkavpipkkSGGERMLGIPTVADRIAQMVVKLVFEPIVEPHFHPDSYGYRPNKSALDA  120
            P+VK V IPK SGG R LG+PTV+DR+AQ VVKL++EP +++ FH+DSYGYRP +SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VGITRQRCWQYDWVLEYDIRGLFDNIDHQLLMKAVRKHTDSKWVLLYIERWLVTPMQLPD  180
            V+ITR+RCW+YDWV+E+DI++ FD+I+H LLMKAVR H    W+LLYIERWLV+P +  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GTLQEKVKGVMQGGVISPVLSNLFLHYVFDSWMVRNATKMSWCRYADDGLVHCKTKFEAQ  240
            G    + +G  QGGV+SP+L NLF+HY FD+WM R + + +  RYADD++VHC+++ +A+
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  QIRRRLEARFIECGLEMHPDKTKIVYCKDSNRRLNYQNTSFDFLGFTFRPREAKNQRNGI  300
             + R + +R+  CGL MHP+K+K+VYCKDSNRR  Y + SF FLGFTFRPR A ++++ +
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  RFTSFTPaaskaamksmrakikkCRLGRRTELSIHDIVDRCNPYLRGWVNYYGQYHITEM  360
             FTSF P+AS  A+K MR  +++ RL R+T++++ D+    NP ++GW +YYG +  T M
Sbjct  304  -FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  361  ESVFRHFNQSLVKWAMRKYIRLN--KTQAIEFLSNLAKEKPRLFVHW  405
             ++F+H++++L +WA RKY  L+  K +  + L ++    PRLF HW
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

114) LPV_1236 in NC_018140


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  362 bits (1360),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 213/407 (53%), Positives = 309/407 (76%), Gaps = 3/407 (0%)

Query  1    MEKTKPFNIPKQLFVQAYKLVKANAGAAGVDEESLEDFAKDLKNNLYKLWNRMSSGSYFp  60
            +  +KP++I+K+   +AY+ V+AN GAAG+D+E++ DF +DL +NLYKLWNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   pavkavpipkkSGGERMLGIPTVADRIAQMVVKLVFEPIVEPHFHPDSYGYRPNKSALDA  120
            P+VK V IPK SGG R LG+PTV+DR+AQ VVKL++EP +++ FH+DSYGYRP +SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VGITRQRCWQYDWVLEYDIRGLFDNIDHQLLMKAVRKHTDSKWVLLYIERWLVTPMQLPD  180
            V+ITR+RCW+YDWV+E+DI++ FD+I+H LLMKAVR H    W+LLYIERWLV+P +  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GTLQEKVKGVMQGGVISPVLSNLFLHYVFDSWMVRNATKMSWCRYADDGLVHCKTKFEAQ  240
            G    + +G  QGGV+SP+L NLF+HY FD+WM R + + +  RYADD++VHC+++ +A+
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  QIRRRLEARFIECGLEMHPDKTKIVYCKDSNRRLNYQNTSFDFLGFTFRPREAKNQRNGI  300
             + R + +R+  CGL MHP+K+K+VYCKDSNRR  Y + SF FLGFTFRPR A ++++ +
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  RFTSFTPaaskaamksmrakikkCRLGRRTELSIHDIVDRCNPYLRGWVNYYGQYHITEM  360
             FTSF P+AS  A+K MR  +++ RL R+T++++ D+    NP ++GW +YYG +  T M
Sbjct  304  -FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  361  ESVFRHFNQSLVKWAMRKYIRLN--KTQAIEFLSNLAKEKPRLFVHW  405
             ++F+H++++L +WA RKY  L+  K +  + L ++    PRLF HW
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

115) Amet_0622 in NC_009633


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  358 bits (1343),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 185/409 (46%), Positives = 290/409 (71%), Gaps = 2/409 (0%)

Query  1    MKKEKPFQITKRAVFEAFKKVEANKGAPGIDEVTLQEYENNLEDNLYKLWNSMSSGSYFP  60
            +   KP++I+KR+V +A+++V AN+GA+GID+ T+ ++E +L  NLYKLWN MSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   QAVRGVEIPKKNGGVRVLGVPSIDDRIAQNVMVSELNPKVEPIFYEDSYGYRENKSAIDA  120
             +V+ VEIPK +GG R LGVP+++DR+AQ V+   ++P +++IF  DSYGYR  +SA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  IEVTRKRCWEYDWLIEFDIVGLFDNINHDLLMKAVKQHTNEKWVILYIERTLKVPMVMSD  180
            + +TR RCW YDW++EFDI + FD+INH+LLMKAV+ H +E W++LYIER L  P    D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GIHVERTKGTPQGGVISAVLANLFMHYAFDHWMTRKHSNNPWVRYADDGLIHSHSLKEAE  240
            G++V R +GTPQGGV+S++L NLFMHYAFD WM R  +N P  RYADD+++H +S K+AE
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  VLLLKLGERFKDCHLEIHPNKTKIIYCKDDNRKQNHIHTNFDFLGYTFRARTVKTKKGNY  300
             ++  ++ R+  C L +HP+K+K++YCKD NR+    H +F FLG+TFR+R   +K+++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FTGFTPAVSKIAIKSFMDKIK--KLRKNSYLSLTELAEKMNPIIRGWANYFDKFTASKVH  358
            FT+F P+ S  A+K   + ++  +L +++ ++L ++A   NP+I+GW +Y++ F  + + 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  359  AILSCVNLSLARWMMKKSKRYKNKFMAALRRLSSIAEETPSLFVHWKMG  407
            +I+  ++ +L RW  +K K    +     ++L  +    P LF HW++ 
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

116) P700755_001480 in NC_018721


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  356 bits (1339),  Expect = 9e-100, Method: Compositional matrix adjust.
 Identities = 190/407 (47%), Positives = 290/407 (72%), Gaps = 2/407 (0%)

Query  5    NETKSIPISRLMVWEAYQKVRSNKGSAGIDAIGMQEFDANRSKHLYKLWNRMASGSYFPP  64
            + +K+  I++  VW+AYQ+VR+N+G+AGID   + +F+ + SK+LYKLWNRM+SGSYFPP
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  65   PVKEVEISKKDGTIRKLGIPTISDRVGQMVVKMFFEPRLELVFSPNSYGYRPKRSAHQAL  124
            PVK+VEI+K  G  RKLG+PT++DRV+Q VVK+++EP L+ +F ++SYGYRP RSA QA+
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  125  SRVRENCWKKNWVIDLDIKGFFDNIDHNKLMLAVEKHVPENWVKLYITRWLEAPVVTKSG  184
            +  RE CW+ +WV+++DIK+ FD+I+H  LM AV  H+ E+W+ LYI RWL AP  T  G
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  185  KLTQRKGKGTPQGGVISPLLANLFLHYAFDTWLEKVDKNVVFTRYADDVILHCNTKAHAE  244
             +   + +GTPQGGV+SPLL NLF+HYAFDTW+++   N  F+RYADD ++HC ++ +AE
Sbjct  185  -MRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  245  QILQLVHQRMESVGLELHPKKTKIVYCRDYRRKENHPMVRFDFLGYSFQPRTAYSKKKRK  304
             +++ +  R+ + GL +HP K+K+VYC+D  R+   P V F FLG++F+PR A SK+  +
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQD-Q  302

Query  305  LFLGYDCAISISSRKRIADKLEELKVNKLTFKSIVGVAQYLNPMIRGWVRYYGKFKMYEL  364
            LF ++  + S  + KR+ + +   ++N+ T  ++V+VA+  NP+I+GW +YYG F    +
Sbjct  303  LFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  365  TKVFRLLSKRLVWWARKRYKRYKTSIRKGYKWLATVRKQFPTLFYHW  411
              +F+ + + L +WAR++YK      R+  +WL  +R   P LF HW
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

117) P700755_003284 in NC_018721


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  356 bits (1339),  Expect = 9e-100, Method: Compositional matrix adjust.
 Identities = 190/407 (47%), Positives = 290/407 (72%), Gaps = 2/407 (0%)

Query  5    NETKSIPISRLMVWEAYQKVRSNKGSAGIDAIGMQEFDANRSKHLYKLWNRMASGSYFPP  64
            + +K+  I++  VW+AYQ+VR+N+G+AGID   + +F+ + SK+LYKLWNRM+SGSYFPP
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  65   PVKEVEISKKDGTIRKLGIPTISDRVGQMVVKMFFEPRLELVFSPNSYGYRPKRSAHQAL  124
            PVK+VEI+K  G  RKLG+PT++DRV+Q VVK+++EP L+ +F ++SYGYRP RSA QA+
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  125  SRVRENCWKKNWVIDLDIKGFFDNIDHNKLMLAVEKHVPENWVKLYITRWLEAPVVTKSG  184
            +  RE CW+ +WV+++DIK+ FD+I+H  LM AV  H+ E+W+ LYI RWL AP  T  G
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  185  KLTQRKGKGTPQGGVISPLLANLFLHYAFDTWLEKVDKNVVFTRYADDVILHCNTKAHAE  244
             +   + +GTPQGGV+SPLL NLF+HYAFDTW+++   N  F+RYADD ++HC ++ +AE
Sbjct  185  -MRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  245  QILQLVHQRMESVGLELHPKKTKIVYCRDYRRKENHPMVRFDFLGYSFQPRTAYSKKKRK  304
             +++ +  R+ + GL +HP K+K+VYC+D  R+   P V F FLG++F+PR A SK+  +
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQD-Q  302

Query  305  LFLGYDCAISISSRKRIADKLEELKVNKLTFKSIVGVAQYLNPMIRGWVRYYGKFKMYEL  364
            LF ++  + S  + KR+ + +   ++N+ T  ++V+VA+  NP+I+GW +YYG F    +
Sbjct  303  LFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  365  TKVFRLLSKRLVWWARKRYKRYKTSIRKGYKWLATVRKQFPTLFYHW  411
              +F+ + + L +WAR++YK      R+  +WL  +R   P LF HW
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

118) SSON_P151 in NC_007385


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  355 bits (1334),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 186/322 (58%), Positives = 265/322 (83%), Gaps = 0/322 (0%)

Query  33   VKSAKPFPVSKRQVWEAYKRVKANRGAAGIDGQTLAGFDENVTDNLYKLWNRMASGSYMP  92
            V SAKP+ ++KR VW+AY++V+ANRGAAGID++T+A+F+ +++ NLYKLWNRM+SGSY P
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  93   QAVRRVDIPKADGGVRPLGIPAVSDRIAQMVVKQILEPVLEPLFHADSYGYRPGKSAHQA  152
             +V++V+IPKA GG R LG+P+V+DR+AQ VVK ++EP L+++FH+DSYGYRPG+SA QA
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  153  IAQARKRCWKFDWVVEVDIKGFFDDIDHDLLLKTVQHHTQARWVVMYIERRLKAPVQMPD  212
            +A +R RCW++DWVVE DIK+ FD+I+H+LL+K+V+ H +  W+++YIER+L AP +  D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  213  GAMLARGRGTPQGGVISPLLSNLFLHYAFDMWMQRQFPGVPFERYADDVVCHCHSQWQAD  272
            G  ++R RGTPQGGV+SPLL NLF+HYAFD WMQR  P  PF RYADD V HC+S+ QA+
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  273  ALISGLRQRLAQCGLQLHPQKTRIVYCKDADRRGDYPETSFDFLGYTFRPRLSMNRWGKT  332
             ++ ++  RLA CGL +HP+K+++VYCKD++RR++YP+ SF FLG+TFRPR ++++ ++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  333  FVNFSPAMSARAGKAIRQEVRR  354
            F +F P+ SA A K +RQ VRR
Sbjct  304  FTSFLPGASADALKRMRQAVRR  325

119) Sinme_6627 in NC_015597


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  354 bits (1329),  Expect = 4e-99, Method: Compositional matrix adjust.
 Identities = 190/323 (59%), Positives = 261/323 (81%), Gaps = 2/323 (0%)

Query  3    SESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTY  62
            S  ++ KP+ I KR V +AY+ V+ANRGAAG+D++T+  FE+DL+ NLYK+WNRMSSG+Y
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVSIPKKAGGERVLGVPTVSDRIAHMVVKQMIEPDLDSLFLPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+A+ VVK +IEP+LDS+F +DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEK  182
            +AV++TR+RCW+YDWV+EFDIK+ FD++ H+LL+KAVR ++K +W LLYIERWL AP E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  183  NGEV-IERSRGTPQGGVVSPILSNLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQ  241
            ++ + + R RGTPQGGV+SP+L NLF+HYAFD WM RT P+ P  RYADD++VHC+S +Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  242  AEVLKVELSSRLAACGLQMHPTKTKIIYSKDQRRREAYPNVTFDFLGYQFRPRRVANTQR  301
            AE +   ++SRLAACGL MHP K+K++Y KD  RR +YP+V+F FLG+ FRPR+  + Q 
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQ-  300

Query  302  DEFFCGYTPAVSPTALKSLRATI  324
            D++F ++ P+ S+ ALK +R ++
Sbjct  301  DQLFTSFLPGASADALKRMRQAV  323

120) P700755_003526 in NC_018721


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  354 bits (1331),  Expect = 4e-99, Method: Compositional matrix adjust.
 Identities = 188/407 (47%), Positives = 289/407 (72%), Gaps = 2/407 (0%)

Query  5    NETKSIPISRLMVWEAYQKVRSNKGSAGIDAIGMQEFDANRRKHLYKLWNRMASGSYFPP  64
            + +K+  I++  VW+AYQ+VR+N+G+AGID   + +F+ +  K+LYKLWNRM+SGSYFPP
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  65   PVKEVEISKKDGTIRKLGIPTISDRVGQMVVKMFFEPRLELVFSPNSYGYRPKRSAHQAL  124
            PVK+VEI+K  G  RKLG+PT++DRV+Q VVK+++EP L+ +F ++SYGYRP RSA QA+
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  125  SKVRLNCWKKNWVIDLDIKGFFDNIDHNKLMLAVEKHVPENWVKLYITRWLEAPVVTKSG  184
            +  R  CW+ +WV+++DIK+ FD+I+H  LM AV  H+ E+W+ LYI RWL AP  T  G
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  185  KLTQRKGKGTPQGGVISPLLANLFLHYAFDTWLEKVDKNVVFTRYADDVILHCNTKAHAE  244
             +   + +GTPQGGV+SPLL NLF+HYAFDTW+++   N  F+RYADD ++HC ++ +AE
Sbjct  185  -MRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  245  QILQLVHQRMESVGLELHPQKTKIVYCRDYRRKENHPMVRFDFLGYSFQPRTAYSKKKRK  304
             +++ +  R+ + GL +HP+K+K+VYC+D  R+   P V F FLG++F+PR A SK+  +
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQD-Q  302

Query  305  LFLGYDCAISISSRKRIADKLEELKVNKLTFKSIVGVAQYLNPMIRGWVRYYGKFKMYEL  364
            LF ++  + S  + KR+ + +   ++N+ T  ++V+VA+  NP+I+GW +YYG F    +
Sbjct  303  LFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  365  TKVFRLLSKRLVWWARKRYKRYKTSIRKGYKWLATVRKQFPTLFYHW  411
              +F+ + + L +WAR++YK      R+  +WL  +R   P LF HW
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

121) Clocl_0891 in NC_016627


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  352 bits (1323),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 188/409 (46%), Positives = 287/409 (71%), Gaps = 1/409 (0%)

Query  1    MEEGKSFEISRHQVLEAYKRVKANHGASGVDGVNFEEFEKDLKNNLYKLWNRMSSGSYFP  60
            +  +K+++I+++ V +AY++V+AN+GA+G+D+  + +FE+DL +NLYKLWNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   KAVRGVEIPKKNGKKRLLGIPTIEDRVAQMTVRMSFEQLVEPIFSSNSYGYRPNRSAIEA  120
             +V+ VEIPK +G  R LG+PT+ DRVAQ  V++ +E  +++IF S+SYGYRP RSA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VAVTRERCWKTPWVLEFDIKGLFDNIDHELLNRAVRKHTDSKWIILYIERFLKAAIKMPD  180
            VA+TRERCW+  WV+EFDIK+ FD+I+H LL +AVR H    WI+LYIER L A++   D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GTIQQRKCGTPQGGVISPVLANLFMHYAFDMWMKREFPGNQWVRYADDGIIHCKTKEEAE  240
            G    R  GTPQGGV+SP+L NLFMHYAFD WM+R  P     RYADD+++HC+++ +AE
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  YILGKLKERMLKCKLEIHPEKTRIVYCRSDKNTERHEHESFDFLGYTFRRRLVKSKYGNF  300
            Y++  +  R+  C L +HPEK+++VYC+  +      H SF FLG+TFR R   SK +++
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FNAFTPAVSKEASQKFRDRIREIRRNNKI-VSIEKLAEEMNPVIRGWANYFSKFCSREAI  359
            F +F P+ S +A ++ R+ +R  R N +  V++  +A   NPVI+GW +Y++ F     +
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  360  KILNYVNLSLIKWCRKKYKRIRGSKGKAYRYLARLAKSKSDLFYHWKIG  408
             I++ ++ +L +W R+KYK ++  K +  + L ++    + LF HW++ 
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

122) RTCIAT899_PB01980 in NC_020061


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  352 bits (1322),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 209/414 (51%), Positives = 304/414 (74%), Gaps = 9/414 (2%)

Query  3    SADTTDKPFRIDKRLVYEAYKAVKSNGGAAGVDGQTIEQFEADLKGNLYKIWNGMSSGSY  62
            S+ ++ KP+ I KR V +AY+ V++N GAAG+D++TI +FE DL  NLYK+WN MSSGSY
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVPIPKKTGGQRILGVPTVSDRIAQMVVKRLIEPELDQIFRPDSYGYRPGKSAL  122
            FPPPV+ V IPK +GG R LGVPTV+DR+AQ VVK LIEPELD IF++DSYGYRPG+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  123  DAVGITRQRCWKYDWVLEFDIKGLNDNLAHDLLLKAVHKHVKGQGALLYIERWLTAPLE-  181
            +AV+ITR+RCW+YDWV+EFDIK+  D++ H+LL+KAV+ H+K +  LLYIERWL AP+E 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  182  QDGQRIGRI-AVPRKGVWS---VRFFQICSCTTHLISNRTYPDLPWCRYADDGLVHCRTE  237
            +DG R+ R  + P+ GV S   + +F   +  T +  +RT P+ P  RYADD++VHCR+ 
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWM--QRTSPNCPFARYADDAVVHCRSR  239

Query  238  QEAEAVKAALQARLAECQLEMHPTKTKIGYCKDPKRRGTYPNVSFDFLGYCFRPRVVRNP  297
            ++AE V  ++ +RLA C L MHP K+K+ YCKD++RR+ YP+VSF FLG+ FRPR   + 
Sbjct  240  KQAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSK  299

Query  298  QNGRLFCRFTPGVAPSALNHMRATIRDLKLRQKTHVSLADIAREINPLLRGWIAYYGRFT  357
            Q+ +LF  F PG ++ AL++MR ++R  +L ++THV+L D+AR  NP+++GW  YYG F 
Sbjct  300  QD-QLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFY  358

Query  358  PSALDALRRYVNQTLCVWVRRKFKRYARST-QAGKFLQRLAQSRTKLFVHWQLG  410
             +A+ ++ + ++++L  W RRK+K   R   + ++ L+++     +LF HW++ 
Sbjct  359  RTAMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

123) P700755_002743 in NC_018721


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  352 bits (1322),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 187/407 (46%), Positives = 287/407 (71%), Gaps = 2/407 (0%)

Query  5    NETKSIPISRLMVWEAYQKVRSNKGSAGIDAIGMQEFDANRRKHLYKLWNRMVSGSYFPP  64
            + +K+  I++  VW+AYQ+VR+N+G+AGID   + +F+ +  K+LYKLWNRM SGSYFPP
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  65   PVKEVEISKKDGTIRKLGIPTISDRVGQMVVKMFFEPRLELVFSPNSYGYRPKRSAHQAL  124
            PVK+VEI+K  G  RKLG+PT++DRV+Q VVK+++EP L+ +F ++SYGYRP RSA QA+
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  125  SKVRLNCWKQNWVIDLDIKGFFDNIDHNKLMLAVEKHVPENWVKLYITRWLEAPVVTKSG  184
            +  R  CW+ +WV+++DIK+ FD+I+H  LM AV  H+ E+W+ LYI RWL AP  T  G
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  185  KLTQRKGKGTPQGGVISPLLANLFLHYAFDTWLEKVDKNVVFTRYADDVILHCNTKAHAE  244
             +   + +GTPQGGV+SPLL NLF+HYAFDTW+++   N  F+RYADD ++HC ++ +AE
Sbjct  185  -MRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  245  QILQLVHQRMESVGLELHPQKTKIVYCRDYRRKENHPMVRFDFLGYSFQPRTAYSKKKRK  304
             +++ +  R+ + GL +HP+K+K+VYC+D  R+   P V F FLG++F+PR A SK+  +
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQD-Q  302

Query  305  LFLGYDCAISISSRKRIADKLEELKVNKLTFKSIVGVAQYLNPMIRGWVRYYGKFKMYEL  364
            LF ++  + S  + KR+ + +   ++N+ T  ++V+VA+  NP+I+GW +YYG F    +
Sbjct  303  LFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  365  TKVFRLLSKRLVWWARKRYERYKTSIRKGYKWLATVRKQFPTLFYHW  411
              +F+ + + L +WAR++Y       R+  +WL  +R   P LF HW
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

124) BTF1_31117 in NC_018509


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  350 bits (1315),  Expect = 7e-98, Method: Compositional matrix adjust.
 Identities = 199/407 (49%), Positives = 300/407 (74%), Gaps = 1/407 (0%)

Query  1    MQETKPFGISKNVVMMAFERVKANKGTYGMDEQSIEMYEMDLKNNLYKLWNRMSSGSYFp  60
            +  +KP++I+K  V  A+++V+AN+G+ G+D+++I  +E DL +NLYKLWNRMSSGSYFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   kpvkavaipkkNGGTRTLGIPTVEDRVAQMVAKLYFEPNVERLFYEDSYGYRPNKSAIQA  120
             PVK V IPK +GGTR LG+PTV DRVAQ V KL +EP+++ +F  DSYGYRP +SA QA
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  IEATRKRCWRKDWVLEFDIKGLFDNIRHDYLIEMVKRHTNQEWVTLYVQRWLITPFQMED  180
            +  TR RCWR DWV+EFDIK+ FD+I H+ L+  V+ H +++W+ LY++RWL++PF+ +D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GTLIERTAGTPQGGVISPVLANLFLHYTFDDFMVKEFSSIPWARYADDGIAHCTSLKQAK  240
            G  + R  GTPQGGV+SP+L NLF+HY+FD  M +  ++ P ARYADD++ HC S KQA 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  YLQRRLEERFKLFGLELNLEKTKIAYCKDDDRQLSYPNTSFDFLGYTFRPRHAKNKHGKF  300
            Y+ R +  R+   GL ++ EK+K+ YCKD +R+ +YP+ SF FLG+TFRPR A +K++++
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FTNFSPaiadkakkairkEVRSWRLQLKADKTLQDISNMFNKKIQGWINYYGHFYKSEMY  360
            FT+F P+ +  A K +R+ VR WRL+ +++ TL D++ ++N  IQGW +YYG FY++ M 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  361  SVLRYINSSLIKWVrrk-ykkrkhrrkAEYWLGTIAQRERKLFAHWK  406
            ++++ I+ +L +W RRK    ++++R+   WL+ +     +LF HW+
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWR  410

125) FsymDg_0103 in NC_015656


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  345 bits (1297),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 191/407 (47%), Positives = 293/407 (72%), Gaps = 1/407 (0%)

Query  6    PAGKSFDIPKTLIWEAYLKVNGNKGAAGVDGQSLAEFEQDLRNNLFKLWNRMSSGSYFPE  65
            +++K++DI+K  +W+AY +V +N+GAAG+D++++A+FE+DL +NL+KLWNRMSSGSYFP 
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  66   PVKAVSIPKPDGGTRILGVPTIADRIAQTAVAMILEPDVDPVFHADSYGYRPGKSALDAV  125
            PVK V IPK+ GGTR LGVPT++DR+AQT V +++EP++D++FH+DSYGYRPG+SA +AV
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  126  EVCKQRCWRHPWVVDLDIQGFFDNVPHAQIIAAVEKHANLTWVVLYVKRWLVAPVQHPDG  185
             + ++RCWR  WVV++DI++ FD++ H+ ++ AV  H +  W++LY+ RWLVAP +  DG
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  186  SRVTPIKGTPQGSAISPLLSNLFLHYALDYWLARRFPVVRFERYCDDIILHCYSQRQAKY  245
             RV   +GTPQG+ +SPLL NLF+HYA+D W+ R  P   F RY DD ++HC S++QA Y
Sbjct  185  MRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEY  244

Query  246  IRDVVEKRLLEFWLRCHPDKTRIVYCKQDGRDEEHPVTSFTFLGFDFHRAPIRRRDGVLM  305
            +   +  RL    L  HP+K+++VYCK+  R    P  SFTFLGF F+      +++ L 
Sbjct  245  VMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLF  304

Query  306  CGFVPLVGRAALKSMARVIRQWKLGRRTSLGFRGLAAMVNPIVAGWIGYYGRFYKSRLMH  365
             +F+P  +  ALK M + +R+W+L R+T + + ++A + NP++ GW  YYG FY++ ++ 
Sbjct  305  TSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLG  364

Query  366  FLSQRINPFLVKWAMrkykrlrrakgrarrklaEIASAFPAMFAHWK  412
            ++ Q+I+  L +WA RKYK L+R K R  + L  + +  P +F HW+
Sbjct  365  IF-QHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWR  410

126) FsymDg_2100 in NC_015656


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  345 bits (1297),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 191/407 (47%), Positives = 293/407 (72%), Gaps = 1/407 (0%)

Query  6    PAGKSFDIPKTLIWEAYLKVNGNKGAAGVDGQSLAEFEQDLRNNLFKLWNRMSSGSYFPE  65
            +++K++DI+K  +W+AY +V +N+GAAG+D++++A+FE+DL +NL+KLWNRMSSGSYFP 
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  66   PVKAVSIPKPDGGTRILGVPTIADRIAQTAVAMILEPDVDPVFHADSYGYRPGKSALDAV  125
            PVK V IPK+ GGTR LGVPT++DR+AQT V +++EP++D++FH+DSYGYRPG+SA +AV
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  126  EVCKQRCWRHPWVVDLDIQGFFDNVPHAQIIAAVEKHANLTWVVLYVKRWLVAPVQHPDG  185
             + ++RCWR  WVV++DI++ FD++ H+ ++ AV  H +  W++LY+ RWLVAP +  DG
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  186  SRVTPIKGTPQGSAISPLLSNLFLHYALDYWLARRFPVVRFERYCDDIILHCYSQRQAKY  245
             RV   +GTPQG+ +SPLL NLF+HYA+D W+ R  P   F RY DD ++HC S++QA Y
Sbjct  185  MRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEY  244

Query  246  IRDVVEKRLLEFWLRCHPDKTRIVYCKQDGRDEEHPVTSFTFLGFDFHRAPIRRRDGVLM  305
            +   +  RL    L  HP+K+++VYCK+  R    P  SFTFLGF F+      +++ L 
Sbjct  245  VMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLF  304

Query  306  CGFVPLVGRAALKSMARVIRQWKLGRRTSLGFRGLAAMVNPIVAGWIGYYGRFYKSRLMH  365
             +F+P  +  ALK M + +R+W+L R+T + + ++A + NP++ GW  YYG FY++ ++ 
Sbjct  305  TSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLG  364

Query  366  FLSQRINPFLVKWAMrkykrlrrakgrarrklaEIASAFPAMFAHWK  412
            ++ Q+I+  L +WA RKYK L+R K R  + L  + +  P +F HW+
Sbjct  365  IF-QHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWR  410

127) FsymDg_2454 in NC_015656


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  345 bits (1297),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 191/407 (47%), Positives = 293/407 (72%), Gaps = 1/407 (0%)

Query  6    PAGKSFDIPKTLIWEAYLKVNGNKGAAGVDGQSLAEFEQDLRNNLFKLWNRMSSGSYFPE  65
            +++K++DI+K  +W+AY +V +N+GAAG+D++++A+FE+DL +NL+KLWNRMSSGSYFP 
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  66   PVKAVSIPKPDGGTRILGVPTIADRIAQTAVAMILEPDVDPVFHADSYGYRPGKSALDAV  125
            PVK V IPK+ GGTR LGVPT++DR+AQT V +++EP++D++FH+DSYGYRPG+SA +AV
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  126  EVCKQRCWRHPWVVDLDIQGFFDNVPHAQIIAAVEKHANLTWVVLYVKRWLVAPVQHPDG  185
             + ++RCWR  WVV++DI++ FD++ H+ ++ AV  H +  W++LY+ RWLVAP +  DG
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  186  SRVTPIKGTPQGSAISPLLSNLFLHYALDYWLARRFPVVRFERYCDDIILHCYSQRQAKY  245
             RV   +GTPQG+ +SPLL NLF+HYA+D W+ R  P   F RY DD ++HC S++QA Y
Sbjct  185  MRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEY  244

Query  246  IRDVVEKRLLEFWLRCHPDKTRIVYCKQDGRDEEHPVTSFTFLGFDFHRAPIRRRDGVLM  305
            +   +  RL    L  HP+K+++VYCK+  R    P  SFTFLGF F+      +++ L 
Sbjct  245  VMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLF  304

Query  306  CGFVPLVGRAALKSMARVIRQWKLGRRTSLGFRGLAAMVNPIVAGWIGYYGRFYKSRLMH  365
             +F+P  +  ALK M + +R+W+L R+T + + ++A + NP++ GW  YYG FY++ ++ 
Sbjct  305  TSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLG  364

Query  366  FLSQRINPFLVKWAMrkykrlrrakgrarrklaEIASAFPAMFAHWK  412
            ++ Q+I+  L +WA RKYK L+R K R  + L  + +  P +F HW+
Sbjct  365  IF-QHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWR  410

128) FsymDg_1667 in NC_015656


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  344 bits (1293),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 206/421 (49%), Positives = 298/421 (71%), Gaps = 4/421 (0%)

Query  3    TSTSTEKPFKISKDLVWVAYQKVKANKGAPGVDGQSIDAFEKDLKNNLYRIWNRMSSGSY  62
            ++ S+ KP+ I+K  VW AYQ+V+AN+GA+G+D+++I  FE+DL +NLY++WNRMSSGSY
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  63   FPPPVRAVEIPKAHGGGVRVLGVPTVADRVAQTVVAMTLEPRMEQVFHDGSYGYRVGRSA  122
            FPPPV+ VEIPKA +GG R LGVPTV+DRVAQTVV + +EP ++ +FH +SYGYR GRSA
Sbjct  62   FPPPVKQVEIPKA-SGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSA  120

Query  123  LDAVGACRQRCWQRDWVVDLDIQDFFGSCPHDLIVRAVEVNTDQPWVVLYVRRWLTAPVC  182
             +AV+  R+RCW+ DWVV++DI+  F+   H+L+++AV ++  + W++LY+ RWL AP  
Sbjct  121  KQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFE  180

Query  183  YPDGSLVTPDRGTPQGSAVSPVLANVFLHYALDLWLAREFPGLPFERYVDDAVVHCATRR  242
              DG  V  +RGTPQG+ +SP+L N+F+HYA+D W+ R  P  PF RY DDAVVHC +R+
Sbjct  181  TDDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRK  240

Query  243  QAEQVRTAIGRRLEEVGLRCHPAKTKVVYCKDSGRRGSHEHTSFTFLGYtfrprrsrnsr  302
            QAE V  +I+ RL   GL  HP K+KVVYCKDS RR++  H SFTFLG+     R   S+
Sbjct  241  QAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGF-TFRPRKALSK  299

Query  303  tgrnftsFSPAISRDALTAKGTEVRSWRIHRRTRATLEDLAHTINPIVRGWMNYWGRFNR  362
             ++ FTSF P+ S DAL      VR WR++R+T+ TL D+A+  NP+++GW +Y G F R
Sbjct  300  QDQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYR  359

Query  363  AELYPLLRRINAYLMKWVRKKYRRL-RAYKHARAWWKTVTERGRGLFAHWSWI-RDAWMA  420
            + +  ++++I+  L +W R+KY+ L R  ++   W   +      LF HW    +++W++
Sbjct  360  TAMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQGWIT  419

Query  421  G  421
            G
Sbjct  420  G  420

129) Franean1_3413 in NC_009921


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  340 bits (1276),  Expect = 8e-95, Method: Compositional matrix adjust.
 Identities = 203/413 (50%), Positives = 281/413 (69%), Gaps = 4/413 (0%)

Query  1    MSGPASRGKSFEIPKQLVWDAWLKVKENGGAPGPDGVTVEQFEANVKDRLYVLWNRMSSG  60
            MSG +S +K+++I+K+ VWDA  +V+ N GA+G D+ T+ +FE ++   LY LWNRMSSG
Sbjct  1    MSGVSS-AKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSG  59

Query  61   SYFPGPVGAVEIPKKGVKGGARTLGIPNVVDRVAQTVLKLALEPKVEPVFHRDSYGYRPG  120
            SYFP PV  VEIPK +  GG+R LG+P V DRVAQTV+KL +EP ++++FH DSYGYRPG
Sbjct  60   SYFPPPVKQVEIPKAS--GGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPG  117

Query  121  RSQRQALEVCRKRCWSHDWVVDLDVRKFFDTVPWEKLLKAVAYHTDQKWVLMYVERCLKA  180
            RS +QA+ + R RCW  DWVV++D++  FD +    L+KAV  H  + W+L+Y+ER L A
Sbjct  118  RSAKQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVA  177

Query  181  PTKHADGTLQERTMGTVQGGPFSPLAANIYLHWGLDAWMAREFPTVPFERWADDVVFHCV  240
            P    DG    R  GT QGG +SPL  N+++H ++D+WM R  P  PF R ADD V HC 
Sbjct  178  PFETDDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCR  237

Query  241  SLEQAREVRDAVVARLVEVGLEAHPDKTRIVYCKDSNRGGDYENTSFTFLSYTFRPRVAW  300
            S  QA  V  ++ +RL   GL  HP+K+++VYCKDSNR ++Y + SFTFL++TFRPR A 
Sbjct  238  SRKQAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKA-  296

Query  301  NGTQKKRFTSFIPGAAPDRVASFSREMRDLRLHRRTNLTLDQLAADINPKVAGWLEYFTM  360
             + Q + FTSF+PGA++D +    + +R  RL+R+T++TL ++A   NP + GW +Y+  
Sbjct  297  LSKQDQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGS  356

Query  361  FYPSVVLPIGTRIDSHLVRWARKKYKRLTRSERRAWAWLKGVRERSPDLFAHW  413
            FY + +L I  +ID  L RWAR+KYK L R  RR   WL  +R   P LF HW
Sbjct  357  FYRTAMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

130) Franean1_6736 in NC_009921


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  340 bits (1276),  Expect = 8e-95, Method: Compositional matrix adjust.
 Identities = 203/413 (50%), Positives = 281/413 (69%), Gaps = 4/413 (0%)

Query  1    MSGPASRGKSFEIPKQLVWDAWLKVKENGGAPGPDGVTVEQFEANVKDRLYVLWNRMSSG  60
            MSG +S +K+++I+K+ VWDA  +V+ N GA+G D+ T+ +FE ++   LY LWNRMSSG
Sbjct  1    MSGVSS-AKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSG  59

Query  61   SYFPGPVGAVEIPKKGVKGGARTLGIPNVVDRVAQTVLKLALEPKVEPVFHRDSYGYRPG  120
            SYFP PV  VEIPK +  GG+R LG+P V DRVAQTV+KL +EP ++++FH DSYGYRPG
Sbjct  60   SYFPPPVKQVEIPKAS--GGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPG  117

Query  121  RSQRQALEVCRKRCWSHDWVVDLDVRKFFDTVPWEKLLKAVAYHTDQKWVLMYVERCLKA  180
            RS +QA+ + R RCW  DWVV++D++  FD +    L+KAV  H  + W+L+Y+ER L A
Sbjct  118  RSAKQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVA  177

Query  181  PTKHADGTLQERTMGTVQGGPFSPLAANIYLHWGLDAWMAREFPTVPFERWADDVVFHCV  240
            P    DG    R  GT QGG +SPL  N+++H ++D+WM R  P  PF R ADD V HC 
Sbjct  178  PFETDDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCR  237

Query  241  SLEQAREVRDAVVARLVEVGLEAHPDKTRIVYCKDSNRGGDYENTSFTFLSYTFRPRVAW  300
            S  QA  V  ++ +RL   GL  HP+K+++VYCKDSNR ++Y + SFTFL++TFRPR A 
Sbjct  238  SRKQAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKA-  296

Query  301  NGTQKKRFTSFIPGAAPDRVASFSREMRDLRLHRRTNLTLDQLAADINPKVAGWLEYFTM  360
             + Q + FTSF+PGA++D +    + +R  RL+R+T++TL ++A   NP + GW +Y+  
Sbjct  297  LSKQDQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGS  356

Query  361  FYPSVVLPIGTRIDSHLVRWARKKYKRLTRSERRAWAWLKGVRERSPDLFAHW  413
            FY + +L I  +ID  L RWAR+KYK L R  RR   WL  +R   P LF HW
Sbjct  357  FYRTAMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

131) Hprae_1164 in NC_017455


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  337 bits (1264),  Expect = 7e-94, Method: Compositional matrix adjust.
 Identities = 200/409 (49%), Positives = 291/409 (72%), Gaps = 0/409 (0%)

Query  1    MSKAKSFNIPKSLVFTAFKAVKKNKGSAGIDKISIekyeknlknnlyklWNRMASGTYFP  60
            +S AK+++I+K  V  A++ V+ N+G+AGID  +I  +E++L +NLYKLWNRM+SG+YFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   KAVKAVEIPKKNGGIRVLGVPTVEDRIAQMIVKLSMEKIIDPIFLNDSYGYRPNRSAHDA  120
             +VK VEIPK +GG R LGVPTV DR+AQ +VKL +E  +D+IF +DSYGYRP RSA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  IKVTRSRCWKYDWVLEFDIKGLFDNINHklllkavykyakykWEILYIKRWLANPVSNNN  180
            + +TR RCW+YDWV+EFDIK+ FD+INH LL+KAV    K  W +LYI RWL  P   ++
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  KITKNTENGTPQGGVISPLLANLFLHFAFDKWMEKRFPNNKWCRYADDGIIHCNSRAEAI  240
             +    E GTPQGGV+SPLL NLF+H+AFD WM++  PN    RYADD+++HC SR +A 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  FILNCLKERMKECKLEIHPGKTKIIYCKDSNRKENNKLHEFTFLGYSFRPRKAKGINGSS  300
            +++  +  R+  C L +HP K+K++YCKDSNR+       FTFLG++FRPRKA + ++  
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FTSFLPAISNKAKKHIRRTIKSRYLLHQTQITLAEVADKYNSVLRGWLNYYGLYGKNELK  360
            FTSFLP+ S  A K++R++++ + L +QT++TL +VA  YN+V++GW +YYG + +  + 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  361  KVLHHMNDHLVMWVIRKFDklktkkmkarkllnkIAKENPNLFSHWTVG  409
             +++H++  L  W  RK+  L  +K +  + L+K+    P LF HW V 
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

132) Clopa_4769 in NC_021182


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  336 bits (1262),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 182/409 (45%), Positives = 286/409 (70%), Gaps = 1/409 (0%)

Query  1    MKEGKPFEISKHQVMEAYKCVKANKGASGTDGVNFTKFEENLKNNLYKIWNRMSSGCYFP  60
            +  +KP++I+K+ V +AY+ V+AN+GA+G D+  ++ FE +L +NLYK+WNRMSSG YFP
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   ASVRGVEITKKDGKTRLLGIPTISDRVAQMVVRMNFEPQVEPIFCDDSYGYRPNRSALDA  120
            ++V+ VEI K  G TR LG+PT++DRVAQ VV++ +EP++++IF  DSYGYRP RSA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VGTARERCWEMPWVIDFDIKGLFDNIDHELMMKAVCKHTDNKWVIMYIERFLKAPIAMPD  180
            V+ +RERCW   WV++FDIK+ FD+I+H L+MKAV  H  + W+++YIER L AP+   D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GTVQERNAGTPQGGVISPVLADLFMHYAFDWWMKQKHPQNPWERYADDAVIHCRTKEEAK  240
            G    R+ GTPQGGV+SP+L +LFMHYAFD WM++  P+ P  RYADDAV+HCR++ +A 
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  VLLVQLKERMTECKLEVHPNKTKIVYCRSDVYPEHHEHESFDFLGYTFRRRIVRSRHGNF  300
             ++  +  R++ C L +HP+K+K+VYC+         H SF FLG+TFR R   S+++++
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FNSFTPAVSKGASQHLRDSVREIR-RKHKVASLEELAEQMNPVLRGWMNYFCKYSAGEAR  359
            F SF P+ S +A +++R++VR  R  ++   +L ++A   NPV++GW +Y+  +      
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  360  NVLNYVNLTLIQCIRYKYKSTGRKHLKSHKLLGRICKEQPNLFYHWQMG  408
             +++ ++ +L +  R KYK+  R+  +  + L+++    P LF HW++ 
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

133) P700755_002382 in NC_018721


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 185/410 (46%), Positives = 279/410 (69%), Gaps = 3/410 (0%)

Query  5    EQTKSIPITKEMVWESYKKVKSNRGSAGIDQQTLSEFDRVRSKELYKVWNRLASGSYFAS  64
              +K+  I+K  VW++Y++V++NRG+AGID++T+++F+R  SK+LYK+WNR++SGSYF++
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  65   AVKRVNIPKAGGKTRPLGIPTVSDRIAQQVVKQYLEPRLESIFSKNSYGYRPNRSAHTAI  124
            +VK+V+IPKA+G TR LG+PTV+DR+AQ VVK  +EP L+SIF  +SYGYRP RSA  A+
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  125  EIVRLNVLRYSWVIDLDIQEFFENVDHSLLLKALERHVSEKWVLLYIKRWLEAPVILEDG  184
             I R    RY WV+++DI+  F++++H+LL+KA+  H+ E W+LLYI RWL AP   +DG
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  185  TVKISTGKGTPQGGVISPLLSNLYMHYCVDKWLEKYYPQVKMVRYADDLIVHCRSYEESV  244
             ++++  +GTPQGGV+SPLL NL+MHY  D W+++  P+    RYADD +VHCRS  ++ 
Sbjct  185  -MRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  245  HTLAVLKERLTECGLTAHPEKTKIVYCKKDGRYLKGYP-VQFDFLGFSFQPIRFKLKKGG  303
              +  +  RL+ CGLT HPEK+K+VYCK   R   GYP V F FLGF+F+P +   K++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNR-RAGYPHVSFTFLGFTFRPRKALSKQDQ  302

Query  304  SFLQFDCKMSRKSKVRITGELRKLAFHNKTQRGIQDLANLLNPKLRGWIQYYGKVSRRSL  363
             F  F    S  +  R+   +R+  ++ +T+  + D+A L NP ++GW QYYG   R ++
Sbjct  303  LFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  364  QPVFYYLHNRMIRWILNKYKRFKGSKIKAVKWLRFITKSYPNLFYHWELG  413
              +F  ++  + RW   KYK +   K +  +WL  +    P LF HW + 
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

134) Celal_0233 in NC_014934


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  330 bits (1237),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 185/410 (46%), Positives = 277/410 (68%), Gaps = 3/410 (0%)

Query  5    EQTKSIPITKEMVWESYKKVKSNRGSAGIDHQTLSEFDSVRSKELYKVWNRLASGSYFAP  64
              +K+  I+K  VW++Y++V++NRG+AGID++T+++F+   SK+LYK+WNR++SGSYF+P
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  65   AVKRVNIPKAGGKTRPLGIPTVSDRIAQQVVKQYLEPRLESIFSENSYGYRPNRSAHSAI  124
            +VK+V+IPKA+G TR LG+PTV+DR+AQ VVK  +EP L+SIF  +SYGYRP RSA  A+
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  125  EVVRRNVLRYSWVIDLDIQEFFENVDHGLLLKALERHVSEKWVLLYIKRWLEAPVILEDG  184
             + R    RY WV+++DI+  F++++HGLL+KA+  H+ E W+LLYI RWL AP   +DG
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  185  TVKISTGKGTPQGGVISPLLSNLYMHYCVDKWLEQYHPQVKMVRYADDLIVHCRSYEAAV  244
             ++++  +GTPQGGV+SPLL NL+MHY  D W+++  P+    RYADD +VHCRS   A 
Sbjct  185  -MRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  245  HTLEVLKERLTECGLTAHPEKTKIVYCKKDGRDLKGYP-VQFDFLGFSFQPIRFRLKKGG  303
              +  +  RL+ CGLT HPEK+K+VYCK   R   GYP V F FLGF+F+P +   K++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRR-AGYPHVSFTFLGFTFRPRKALSKQDQ  302

Query  304  SFLQFDCKMSRKSKVRITGELRKLAFHNKTQRGIQDLANLLNPKIRGWVRYYGKISRRSL  363
             F  F    S  +  R+   +R+  ++ +T+  + D+A L NP I+GW +YYG + R ++
Sbjct  303  LFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  364  QPLFYYLHNRMLGWILNKYKRFKGSKIKAVKWLRFITKSYPNLFYHWELG  413
              +F  ++  +  W   KYK +   K +  +WL  +    P LF HW + 
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

135) Celal_3193 in NC_014934


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  330 bits (1237),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 185/410 (46%), Positives = 277/410 (68%), Gaps = 3/410 (0%)

Query  5    EQTKSIPITKEMVWESYKKVKSNRGSAGIDHQTLSEFDSVRSKELYKVWNRLASGSYFAP  64
              +K+  I+K  VW++Y++V++NRG+AGID++T+++F+   SK+LYK+WNR++SGSYF+P
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  65   AVKRVNIPKAGGKTRPLGIPTVSDRIAQQVVKQYLEPRLESIFSENSYGYRPNRSAHSAI  124
            +VK+V+IPKA+G TR LG+PTV+DR+AQ VVK  +EP L+SIF  +SYGYRP RSA  A+
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  125  EVVRRNVLRYSWVIDLDIQEFFENVDHGLLLKALERHVSEKWVLLYIKRWLEAPVILEDG  184
             + R    RY WV+++DI+  F++++HGLL+KA+  H+ E W+LLYI RWL AP   +DG
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  185  TVKISTGKGTPQGGVISPLLSNLYMHYCVDKWLEQYHPQVKMVRYADDLIVHCRSYEAAV  244
             ++++  +GTPQGGV+SPLL NL+MHY  D W+++  P+    RYADD +VHCRS   A 
Sbjct  185  -MRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  245  HTLEVLKERLTECGLTAHPEKTKIVYCKKDGRDLKGYP-VQFDFLGFSFQPIRFRLKKGG  303
              +  +  RL+ CGLT HPEK+K+VYCK   R   GYP V F FLGF+F+P +   K++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRR-AGYPHVSFTFLGFTFRPRKALSKQDQ  302

Query  304  SFLQFDCKMSRKSKVRITGELRKLAFHNKTQRGIQDLANLLNPKIRGWVRYYGKISRRSL  363
             F  F    S  +  R+   +R+  ++ +T+  + D+A L NP I+GW +YYG + R ++
Sbjct  303  LFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  364  QPLFYYLHNRMLGWILNKYKRFKGSKIKAVKWLRFITKSYPNLFYHWELG  413
              +F  ++  +  W   KYK +   K +  +WL  +    P LF HW + 
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

136) Celal_3278 in NC_014934


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  330 bits (1237),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 185/410 (46%), Positives = 277/410 (68%), Gaps = 3/410 (0%)

Query  5    EQTKSIPITKEMVWESYKKVKSNRGSAGIDHQTLSEFDSVRSKELYKVWNRLASGSYFAP  64
              +K+  I+K  VW++Y++V++NRG+AGID++T+++F+   SK+LYK+WNR++SGSYF+P
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  65   AVKRVNIPKAGGKTRPLGIPTVSDRIAQQVVKQYLEPRLESIFSENSYGYRPNRSAHSAI  124
            +VK+V+IPKA+G TR LG+PTV+DR+AQ VVK  +EP L+SIF  +SYGYRP RSA  A+
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  125  EVVRRNVLRYSWVIDLDIQEFFENVDHGLLLKALERHVSEKWVLLYIKRWLEAPVILEDG  184
             + R    RY WV+++DI+  F++++HGLL+KA+  H+ E W+LLYI RWL AP   +DG
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  185  TVKISTGKGTPQGGVISPLLSNLYMHYCVDKWLEQYHPQVKMVRYADDLIVHCRSYEAAV  244
             ++++  +GTPQGGV+SPLL NL+MHY  D W+++  P+    RYADD +VHCRS   A 
Sbjct  185  -MRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  245  HTLEVLKERLTECGLTAHPEKTKIVYCKKDGRDLKGYP-VQFDFLGFSFQPIRFRLKKGG  303
              +  +  RL+ CGLT HPEK+K+VYCK   R   GYP V F FLGF+F+P +   K++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRR-AGYPHVSFTFLGFTFRPRKALSKQDQ  302

Query  304  SFLQFDCKMSRKSKVRITGELRKLAFHNKTQRGIQDLANLLNPKIRGWVRYYGKISRRSL  363
             F  F    S  +  R+   +R+  ++ +T+  + D+A L NP I+GW +YYG + R ++
Sbjct  303  LFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  364  QPLFYYLHNRMLGWILNKYKRFKGSKIKAVKWLRFITKSYPNLFYHWELG  413
              +F  ++  +  W   KYK +   K +  +WL  +    P LF HW + 
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

137) Celal_3195 in NC_014934


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  328 bits (1229),  Expect = 4e-91, Method: Compositional matrix adjust.
 Identities = 184/410 (45%), Positives = 276/410 (68%), Gaps = 3/410 (0%)

Query  5    EQTKSIPITKEMMWESYKKVKSNRGSAGIDHQTLSEFDSVRSKELYKVWNRLASGSYFAP  64
              +K+  I+K  +W++Y++V++NRG+AGID++T+++F+   SK+LYK+WNR++SGSYF+P
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  65   AVKRVNIPKAGGKTRPLGIPTVSDRIAQQVVKQYLEPRLESIFSENSYGYRPNRSAHSAI  124
            +VK+V+IPKA+G TR LG+PTV+DR+AQ VVK  +EP L+SIF  +SYGYRP RSA  A+
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  125  EVVRRNVLRYSWVIDLDIQEFFENVDHGLLLKALERHVSEKWVLLYIKRWLEAPVILEDG  184
             + R    RY WV+++DI+  F++++HGLL+KA+  H+ E W+LLYI RWL AP   +DG
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  185  TVKISTGKGTPQGGVTSPLLSNLYMHYCVDKWLEQYHPQVKMVRYADDLIVHCRSYEAAV  244
             ++++  +GTPQGGV SPLL NL+MHY  D W+++  P+    RYADD +VHCRS   A 
Sbjct  185  -MRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  245  HTLEVLKERLTECGLTAHPEKTKIVYCKKDGRDLKGYP-VQFDFLGFSFQPIRFRLKKGG  303
              +  +  RL+ CGLT HPEK+K+VYCK   R   GYP V F FLGF+F+P +   K++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRR-AGYPHVSFTFLGFTFRPRKALSKQDQ  302

Query  304  SFLQFDCKMSRKSKVRITGELRKLAFHNKTQRGIQDLANLLNPKIRGWVRYYGKISRRSL  363
             F  F    S  +  R+   +R+  ++ +T+  + D+A L NP I+GW +YYG + R ++
Sbjct  303  LFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  364  QPLFYYLHNRMLGWILNKYKRFKGSKIKAVKWLRFITKSYPNLFYHWELG  413
              +F  ++  +  W   KYK +   K +  +WL  +    P LF HW + 
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

138) Celal_3203 in NC_014934


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  328 bits (1229),  Expect = 4e-91, Method: Compositional matrix adjust.
 Identities = 184/410 (45%), Positives = 276/410 (68%), Gaps = 3/410 (0%)

Query  5    EQTKSIPITKEMVWESYKKVKSNRGSAGIDHQTLSEFDSVRSKELYKVWNRLASGSYFAP  64
              +K+  I+K  VW++Y++V++NRG+AGID++T+++F+   SK+LYK+WNR++SGSYF+P
Sbjct  5    SSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPP  64

Query  65   AVKRVNIPKAGGKTRPLGIPTVSDRIAQQVVKQYLEPRLESIFSENSYGYRPNRSAHSAI  124
            +VK+V+IPKA+G TR LG+PTV+DR+AQ VVK  +EP L+SIF  +SYGYRP RSA  A+
Sbjct  65   PVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAV  124

Query  125  EVVRRNVLRYSWVIDLDIQEFFENVDHGLLLKALERHVSEKWVLLYIKRWLEAPVILEDG  184
             + R    RY WV+++DI+  F++++HGLL+KA+  H+ E W+LLYI RWL AP   +DG
Sbjct  125  AITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDG  184

Query  185  TVKISTGKGTPQVGVISPLLSNLYMHYCVDKWLEQYHPQVKMVRYADDLIVHCRSYEAAV  244
             ++++  +GTPQ GV+SPLL NL+MHY  D W+++  P+    RYADD +VHCRS   A 
Sbjct  185  -MRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  245  HTLEVLKERLTECGLTAHPEKTKIVYCKKDGRDLKGYP-VQFDFLGFSFQPIRFRLKKGG  303
              +  +  RL+ CGLT HPEK+K+VYCK   R   GYP V F FLGF+F+P +   K++ 
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRR-AGYPHVSFTFLGFTFRPRKALSKQDQ  302

Query  304  SFLQFDCKMSRKSKVRITGELRKLAFHNKTQRGIQDLANLLNPKIRGWVRYYGKISRRSL  363
             F  F    S  +  R+   +R+  ++ +T+  + D+A L NP I+GW +YYG + R ++
Sbjct  303  LFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAM  362

Query  364  QPLFYYLHNRMLGWILNKYKRFKGSKIKAVKWLRFITKSYPNLFYHWELG  413
              +F  ++  +  W   KYK +   K +  +WL  +    P LF HW + 
Sbjct  363  LGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

139) Sputcn32_0275 in NC_009438


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  324 bits (1217),  Expect = 3e-90, Method: Compositional matrix adjust.
 Identities = 177/348 (51%), Positives = 248/348 (72%), Gaps = 1/348 (0%)

Query  1    MTTTAIPKKSGGERILGIPTIQDRVAQMVVKLSFEPLVEPHFLNDSYGYRPNRSAIDAVG  60
            +    IPK SGG R LG+PT+ DRVAQ VVKL +EP +++ F +DSYGYRP RSA +AV+
Sbjct  66   VKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVA  125

Query  61   VTRKRCWYQDWVLEFDIKGLFDNISHELLMKAVRKHTDCKWLLLYIERWLKAPMVKDNNE  120
            +TR RCW  DWV+EFDIK+ FD+I+H LLMKAVR H    W+LLYIERWL AP   D+  
Sbjct  126  ITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGM  185

Query  121  VIERNMGTPQGGVISPVLANLFLHYVFDKWMHKNHPGVKWCRYADDGLVHCNSEEQAQKM  180
             + R+ GTPQGGV+SP+L NLF+HY FD WM++  P     RYADD++VHC S  QA+ +
Sbjct  186  RVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYV  245

Query  181  RAELEKRFKDCGLEMHPTKTKIVYCKDGTRKGQYENTAFDFLGYTFRPRLCRNRHTQGTF  240
               +  R+  CGL MHP K+K+VYCKD+ R++ Y + +F FLG+TFRPR   +++ Q  F
Sbjct  246  MRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQ-LF  304

Query  241  ISFTPAVSKDAQKGMIKKIRMLAIRKRTDLSLEQIARRINPIINGWINYYGSFCRSELYR  300
             SF P+ S DA K M + +R   + ++T+++L ++AR  NP+I+GW +YYGSF R+ +  
Sbjct  305  TSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLG  364

Query  301  VFRQINKALIWWARHKYKKLQRRKTRAGQFMEKVADTHRHLFAHWRIG  348
            +F++I++AL +WAR+KYK L+RRK R +Q ++K+     +LF HWR+ 
Sbjct  365  IFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

140) CJA_3185 in NC_010995


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  322 bits (1206),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 185/402 (47%), Positives = 272/402 (68%), Gaps = 3/402 (0%)

Query  3    SYSISKQLVYAAWLKVKANAGVAGADNVCIDMFEHNLENELYKLWNRMSSGSYMAPPVKR  62
            +Y I+K+ V  A  +V+AN G AG D+  I  FE++L ++LYKLWNRMSSGSY +PPVK+
Sbjct  9    PYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVKQ  68

Query  63   VEMAKADGKLRPLGIPTVADRVAQMVVKMTLEPEWDSKFHASSFGYRPRRSAHHAVQAAK  122
            VE++KA G  R LG+PTV+DRVAQ VVK+ +EPE DS FH+ S+GYRP RSA +AV  ++
Sbjct  69   VEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAITR  128

Query  123  INCWKYSWVIDLDIKGFFDNLNHDQLQKFVAQATDDPWCKLYIKRWITAGVQMPGGELHK  182
              CW+Y WV+++DIK+ FD++NH+ L K V     + W  LYI RW+ A  +  +G    
Sbjct  129  ERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRVP  188

Query  183  TAKGTPQGGVISPLLANLYLHKVFDSWMQKYFPQNPFERYADDIVCHCRTEHEAEQLLSA  242
              +GTPQGGV+SPLL NL++H  FD+WMQ+  P+ PF RYADD V HCR+  +AE ++ +
Sbjct  189  RERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMRS  248

Query  243  ISRRMQRFDLTLHPEKTKIVYC--GRRKIERTKAQSFDFLGFTFRRRTVKRKDGKLVPGF  300
            I+ R+   +LT+HPEK+K+VYC  + R+       SF FLGFTFR R    K+++L  +F
Sbjct  249  IASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHV-SFTFLGFTFRPRKALSKQDQLFTSF  307

Query  301  VPAISNKAKKAIVKTMREWNVRRLSRLSIVTLSKKLNPQIRGWFTYYGAFYPSALQGIRE  360
            +P+ S  A K + +++R W + R +++++V +++  NP I+GW  YYG+FY +A+ GI +
Sbjct  308  LPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQ  367

Query  361  AIECRLTKWVKGKYPQKRSRRLNAYSWLTQIKQWRPTLFAHW  402
             I+  L +W + KY   + R+     WL +++   P LF HW
Sbjct  368  HIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

141) Clocl_3161 in NC_016627


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  322 bits (1206),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 185/409 (46%), Positives = 286/409 (70%), Gaps = 1/409 (0%)

Query  1    MEEGKSFEISRHQVLEAYKRVKANHGASGVDGVnfeefekelknnlyklWNRMSSGSYLP  60
            +  +K+++I+++ V +AY++V+AN+GA+G+D+  + +FE++L +NLYKLWNRMSSGSY+P
Sbjct  4    VSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFP  63

Query  61   KAVKGVEIPKKNGKKRLLGIPTIEDRVAQMTVRMSFEKLVEPIFSSNSYGYRQNRSAIEA  120
             +VK VEIPK +G  R LG+PT+ DRVAQ  V++ +E  +++IF S+SYGYR  RSA +A
Sbjct  64   PPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQA  123

Query  121  VAVTRERCWKTPWVLEFDIKGLFDNIDHELLNRAVRKHTESKWIILYIERFLKAAIKMPD  180
            VA+TRERCW+  WV+EFDIK+ FD+I+H LL +AVR H    WI+LYIER L A++   D
Sbjct  124  VAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDD  183

Query  181  GTIQQRKCGTPQGGVISPVLANLFMHYAFDMWMKREFPGNQWVRYADDGIIHCKTKEEAE  240
            G    R  GTPQGGV+SP+L NLFMHYAFD WM+R  P     RYADD+++HC+++ +AE
Sbjct  184  GMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAE  243

Query  241  YILGKLKERMLKCKLEIHPEKTRIVYCRSDKNTERHEHESFDFLGYTFRRRLVKSKYGNF  300
            Y++  +  R+  C L +HPEK+++VYC+  +      H SF FLG+TFR R   SK +++
Sbjct  244  YVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQL  303

Query  301  FNAFTPAVSKEASQKFRDRIREIRRNNKI-VSIEKLAEEMNPVIRGWANYFSKFCSREAI  359
            F +F P+ S +A ++ R+ +R  R N +  V++  +A   NPVI+GW +Y++ F     +
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  360  KVLNYVNLSLIKWCRKKYKRIRGSKGKAYRYLARLAKSKSDLFYHWKIG  408
             +++ ++ +L +W R+KYK ++  K +  + L ++    + LF HW++ 
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

142) XNC1_4573 in NC_014228


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  321 bits (1203),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 178/320 (56%), Positives = 243/320 (76%), Gaps = 0/320 (0%)

Query  1    MASGSYMPPAVRRVEIPKATGGTRPLGIPTVADRIAQMVVKDRLEPILEPQFHVDSYGYR  60
            M+SGSY PP+V++VEIPKA+GGTR LG+PTV+DR+AQ VVK  +EP L++ FH DSYGYR
Sbjct  56   MSSGSYFPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYR  115

Query  61   PHKSAHDALRVARQRCWRTDWVLDVDIKRFFDNIDHELLMRAVRRHTDCRWVLLYIERWL  120
            P +SA +A+ ++R+RCWR DWV++ DIK  FD+I+H LLM+AVR H    W+LLYIERWL
Sbjct  116  PGRSAKQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWL  175

Query  121  TASVYMPDGTVQIRDKGTPQGGVVSPLLANLFLHYAFDMWMKREFPVVRFERYADDIVIH  180
             A+    DG    R++GTPQGGV+SPLL NLF+HYAFD WM+R  P   F RYADD V+H
Sbjct  176  VAPFETDDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVH  235

Query  181  CKSHAQAMMLRGKLRKRLAECKLEMSPGKTKVVYCKDRERTEAYPEISFDFLGYTFRPRK  240
            C+S+ QA  +   +  RLA C L M P K+KVVYCKD +R  +YP++SF FLG+TFRPRK
Sbjct  236  CRSRKQAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRK  295

Query  241  SVSKEGELLVNFLPAMSTRAAKAIRQTVRGWDLSHKTPLSLEVMARWLNPMLRGWVKYYG  300
            ++SK+++L+ +FLP+ S+ A K +RQ+VR W L+++T ++L  +AR  NP+++GW +YYG
Sbjct  296  ALSKQDQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYG  355

Query  301  RFYRSAMDCVASHVDLHLAK  320
             FYR+AM  +  H+D  L +
Sbjct  356  SFYRTAMLGIFQHIDRALER  375

143) ECED1_0322 in NC_011745


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  319 bits (1196),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 175/404 (44%), Positives = 274/404 (68%), Gaps = 7/404 (1%)

Query  4    KSFEIPKALVWASYLDVRRNKGAPGCDGQTLKMFDQQRDGNLYKIWNRLCSGTWFPPPVL  63
            K+++I+K  VW +Y +VR N+GA+G D++T+  F+++   NLYK+WNR+ SG+ FPPPV 
Sbjct  8    KPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVK  67

Query  64   EKRIPKPNGKERILGIPTVSDRIAQGAIKLFMEEKLDPIFHADSYGYRPGKSAHDALKQC  123
            +  IPK++G  R LG+PTV+DR+AQ  +KL++E  LD+IFH+DSYGYRPG+SA +A+   
Sbjct  68   QVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAIT  127

Query  124  AIRCWRYSWILEVDISAFFDHVRHDLVLKALEHHGMPKWVILYCRRWMEAPMQSCENGEL  183
              RCWRY W++E DI A FD++ H+L++KA+  H    W++LY  RW+ AP ++ ++G  
Sbjct  128  RERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET-DDGMR  186

Query  184  ITRTRGTPQGGVISPLLANLFLHYAFDLWMEREYRGVPFERYADDIVVHCSRMSDATRLK  243
            + R RGTPQGGV+SPLL NLF+HYAFD WM+R     PF RYADD VVHC    +A  + 
Sbjct  187  VPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVM  246

Query  244  NRLSERFSEVGLVLNAGKTNIAYIDTFKRRNV--ATSFTFLGYDFKVRTLKNFKGELYRK  301
              ++ R++  GL +++ K+++ Y    +RR      SFTFLG+ F+ R   + +++L+  
Sbjct  247  RSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTS  306

Query  302  CMPGASNAAMRKITETIKKWRIHRSTAESLLDFARRYNAIVRGWIEYYGKFWSRNFNYRL  361
             +PGAS  A++++ +++++WR++R T  +L+D AR YN++++GW +YYG F  R     +
Sbjct  307  FLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSF-YRTAMLGI  365

Query  362  WSAMQSRLLKWMQSKYRLSNRRAQRK---LTLVRKEYPKLFVHW  402
               ++  L +W + KY+  +RR +R    L  +R   P+LF HW
Sbjct  366  FQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

144) ECED1_4889 in NC_011745


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  319 bits (1196),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 175/404 (44%), Positives = 274/404 (68%), Gaps = 7/404 (1%)

Query  4    KSFEIPKALVWASYLDVRRNKGAPGCDGQTLKMFDQQRDGNLYKIWNRLCSGTWFPPPVL  63
            K+++I+K  VW +Y +VR N+GA+G D++T+  F+++   NLYK+WNR+ SG+ FPPPV 
Sbjct  8    KPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVK  67

Query  64   EKRIPKPNGKERILGIPTVSDRIAQGAIKLFMEEKLDPIFHADSYGYRPGKSAHDALKQC  123
            +  IPK++G  R LG+PTV+DR+AQ  +KL++E  LD+IFH+DSYGYRPG+SA +A+   
Sbjct  68   QVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAIT  127

Query  124  AIRCWRYSWILEVDISAFFDHVRHDLVLKALEHHGMPKWVILYCRRWMEAPMQSCENGEL  183
              RCWRY W++E DI A FD++ H+L++KA+  H    W++LY  RW+ AP ++ ++G  
Sbjct  128  RERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET-DDGMR  186

Query  184  ITRTRGTPQGGVISPLLANLFLHYAFDLWMEREYRGVPFERYADDIVVHCSRMSDATRLK  243
            + R RGTPQGGV+SPLL NLF+HYAFD WM+R     PF RYADD VVHC    +A  + 
Sbjct  187  VPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVM  246

Query  244  NRLSERFSEVGLVLNAGKTNIAYIDTFKRRNV--ATSFTFLGYDFKVRTLKNFKGELYRK  301
              ++ R++  GL +++ K+++ Y    +RR      SFTFLG+ F+ R   + +++L+  
Sbjct  247  RSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTS  306

Query  302  CMPGASNAAMRKITETIKKWRIHRSTAESLLDFARRYNAIVRGWIEYYGKFWSRNFNYRL  361
             +PGAS  A++++ +++++WR++R T  +L+D AR YN++++GW +YYG F  R     +
Sbjct  307  FLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSF-YRTAMLGI  365

Query  362  WSAMQPRLLKWMQSKYRLSNRRAQRK---LTLVRKEYPKLFVHW  402
               ++  L +W + KY+  +RR +R    L  +R   P+LF HW
Sbjct  366  FQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

145) ECP_3838 in NC_008253


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  315 bits (1181),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 173/404 (43%), Positives = 272/404 (68%), Gaps = 7/404 (1%)

Query  4    KSFEIPKALVWASYLDVRRNKGAPGCDGQTLKMFDQQRDGNLYKIWNRLCSGTWFPPPVL  63
            K+++I+K  VW +Y +VR N+GA+G D++T+  F+++   NLYK+WNR+ SG+ FPPPV 
Sbjct  8    KPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVK  67

Query  64   EKRIPKSNGKERILGIPTVSDRIAQGAIKLFMEEKLDPIFHADSYGYRPGKSAHDALKQC  123
            +  IPK++G  R LG+PTV+DR+AQ  +KL++E  LD+IFH+DSYGYRPG+SA +A+   
Sbjct  68   QVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAIT  127

Query  124  AIRCWRYSWILEVDISAFFDHVRHDLVLKALEHHGMPKWAILYCRRWMEAPMQSCENGEL  183
              RCWRY W++E DI A FD++ H+L++KA+  H    W +LY  RW+ AP ++ ++G  
Sbjct  128  RERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET-DDGMR  186

Query  184  ITRTRGTPQGGVISPLLANLFLHYAFDLWMEREYRGVPFERYADDIVVHCSRMSDATRLK  243
            + R RGTPQGGV+SPLL NLF+HYAFD WM+R     PF RYADD VVHC    +A  + 
Sbjct  187  VPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVM  246

Query  244  NRLSERFSEVGLVLNAGKTNIAYIDTFKRRN--VATSFTFLGYDFKVRTLKNFKGELYRK  301
              ++ R++  GL +++ K+++ Y    +RR      SFTFLG+ F+ R   + +++L+  
Sbjct  247  RSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTS  306

Query  302  CMPGASNAAMRKITETIKKWRIHRSTAESLLDFARRYNAIVRGWIGYYAKFWSRNFNYRL  361
             +PGAS  A++++ +++++WR++R T  +L+D AR YN++++GW  YY+ F  R     +
Sbjct  307  FLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSF-YRTAMLGI  365

Query  362  WSAMQSRLLKWMQSKYRLSNRKAQRK---LTLVRKEYPKLFVHW  402
               ++  L +W + KY+  +R+ +R    L  +R   P+LF HW
Sbjct  366  FQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

146) Francci3_3730 in NC_007777


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  309 bits (1159),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 166/329 (51%), Positives = 249/329 (76%), Gaps = 1/329 (0%)

Query  5    VTTPTVADRIAQTVAAVRLEATVEPIFHPGSYGYRPGRSALDAVAACRQRCWKTDWVIDL  64
            +  PTV+DR+AQTV  + +E+ +++IFH++SYGYRPGRSA +AVA  R+RCW+ DWV+++
Sbjct  81   LGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAITRERCWRYDWVVEF  140

Query  65   DIQEFFDSVPWDLVVKAVEAHTSDRWVVLYVQRWLKAPLQLPDGTLRARDRGTPQGSSIS  124
            DI+  FD +  +L++KAV  H  + W++LY++RWL AP++  DG   +R+RGTPQG+ +S
Sbjct  141  DIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRVPRERGTPQGGVLS  200

Query  125  PVLANLFMHYAFDAWLARTYPGVAFERYADDAIVHCDSRSRARHVLAALDDRMGQVGLRP  184
            P+L NLFMHYAFD+W+ RT P  +F RYADDA+VHC SR +A  V+ ++  R++  GL  
Sbjct  201  PLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMRSIASRLAACGLTM  260

Query  185  HPTKTRIVYCKDSNRRGSHEHTSFTFLGYTFRARKARSRHGKFFTNFLPAISKEAQKKVS  244
            HP K+++VYCKDSNRR++  H SFTFLG+TFR+RKA S+++++FT+FLP+ S +A K++ 
Sbjct  261  HPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSFLPGASADALKRMR  320

Query  245  GQVRRWRLHLRTGHTLDELARKINPIVRGWAQYYGAFYRSALLPLLQRINAYLVRWLRKK  304
              VRRWRL+ +T  TL ++AR  NP+++GW QYYG+FYR+A+L ++Q+I+  L RW R+K
Sbjct  321  QAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQHIDRALERWARRK  380

Query  305  YKRLRPFHKALACW-QRITRQRPGLFAHW  332
            YK L+   + ++ W +++    P LF HW
Sbjct  381  YKALHRRKRRISQWLDKMRTVVPRLFHHW  409

147) Amet_3359 in NC_009633


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  304 bits (1138),  Expect = 5e-84, Method: Compositional matrix adjust.
 Identities = 150/329 (46%), Positives = 237/329 (73%), Gaps = 0/329 (0%)

Query  2    LTLPTIADRVAQMVVKMYVEPLVEPLFHEDSYGYRPQKSAIDAIGQARKRCWKYDFVIEF  61
            L +PT++DRVAQ VVK+ +EP ++++FH DSYGYRP +SA +A++ +R RCW+YD V+EF
Sbjct  81   LGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAITRERCWRYDWVVEF  140

Query  62   DIRGLFDNIDHELLMKVVKKHVKEKWIQLYIVRWLKTPFALKDRTMVTRTTGTPQGGVIS  121
            DI++ FD+I+H LLMK V+ H+KE WI LYI RWL +PF   D   V R  GTPQGGV+S
Sbjct  141  DIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRVPRERGTPQGGVLS  200

Query  122  PLLANMFMHYAFDKWMDRGFPYAPFERYADDAIIHCRTEQEAEEILKVLDERMKSCKLEL  181
            PLL N+FMHYAFD WM+R  P  PF RYADDA++HCR+ ++AE +++ +  R+ +C L +
Sbjct  201  PLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMRSIASRLAACGLTM  260

Query  182  HPQKTRIVYCKDKDRKSEYPNVEFDFLGYTFKGTFIKNRTGQMGINFIASASKKANKLFR  241
            HP+K+++VYCKD +R++ YP+V F FLG+TF+     ++ +Q+  +F+++AS  A K  R
Sbjct  261  HPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSFLPGASADALKRMR  320

Query  242  AKIKALKIHKKTGCKIDMIAQWINPIVRGWINYFGKYNASAIKYTLDCVERRIVKWAMCK  301
              ++  +++++T   +  +A+  NP+++GW +Y+G +  +A+   ++ ++R + +WA  K
Sbjct  321  QAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQHIDRALERWARRK  380

Query  302  FKNFRGHRRRAEKWLDEIRKREPSLFAHW  330
            +K ++ ++RR  +WLD +R   P LF HW
Sbjct  381  YKALHRRKRRISQWLDKMRTVVPRLFHHW  409

148) EcolC_2197 in NC_010468


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  301 bits (1129),  Expect = 4e-83, Method: Compositional matrix adjust.
 Identities = 197/412 (48%), Positives = 293/412 (72%), Gaps = 1/412 (0%)

Query  23   AAGEQTKPFQVSKLHVVEAYRRVKANAGAAGVDNQTLKDFERDLKGNLYKIWNRLSSGSW  82
            ++   +KP++++K  V +AY++V+AN GAAG+D++T+ DFERDL  NLYK+WNR+SSGS 
Sbjct  2    SGVSSAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSY  61

Query  83   MPPPVRAVEIPKKDGSKRLLGIPTVSDRIAQMTVLVTFEPLVERYFLNDSYGYRHGKSAL  142
             PPPV+ VEIPK  G+ R LG+PTV+DR+AQ  V + +EP ++  F +DSYGYR G+SA 
Sbjct  62   FPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAK  121

Query  143  DAIAVTRKRCWQYDWYLEFDIKGLFDNIPHDLLLRAVDKHCADKWVRLSIRRWLTAPVQM  202
            +A+A+TR RCW+YDW +EFDIK+ FD+I H+LL++AV  H  + W+ L I RWL AP + 
Sbjct  122  QAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET  181

Query  203  PDGTLKERNKGTPQGGVISPVLANLFLHYVFDKWLSLLYPEIPWCRYADDGLIHCGSKQQ  262
             DG    R++GTPQGGV+SP+L NLF+HY FD W+    P+ P  RYADD+++HC S++Q
Sbjct  182  DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQ  241

Query  263  AEELLNKLAKPFQECGLELHPEKTKIVYCKDSERQANHETVQFNFLGYTFrarrarnqrr  322
            AE ++  +A  +  CGL +HPEK+K+VYCKDS+R+A    V F FLG+TF   R    ++
Sbjct  242  AEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTF-RPRKALSKQ  300

Query  323  GNLFTSFSLAVSNSAQKDMIGklrklrlrrrVEMSLEDIAKRLNPMISGWLNyyakyyks  382
            ++LFTSF  + S  A K M   +R+ RL R+ +++L D+A+  NP+I GW +YY+ +Y++
Sbjct  301  DQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRT  360

Query  383  amkkVCRYINLTLIAWarkkyktlrykktkaCQLMERLSKEKLELFAHWKAG  434
            AM  + + I+ +L  WAR+KYK+L+ +K +  Q ++++      LF HW+  
Sbjct  361  AMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

149) Mmc1_1129 in NC_008576


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  298 bits (1117),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 167/344 (49%), Positives = 242/344 (71%), Gaps = 4/344 (1%)

Query  10   RLGIPTIGDRIAQAVVKRYLEPLVEPKFHEDSYGYRPNRSALDAVRQARQRCWRDDWVLD  69
            +LG+PT+GDR+AQ+VVK  +EP +++ FH DSYGYRP RSA +AV  +R+RCWR DWV++
Sbjct  80   KLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAITRERCWRYDWVVE  139

Query  70   LDISKFFDKLDHALVMRAVKRFTDCKWVLLYIERWLKADVQLQDETILHREMGTPQGGVI  129
            +DI   FD+++H+L+M+AV+      W+LLYIERWL A  + +D   + RE GTPQGGV+
Sbjct  140  FDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGMRVPRERGTPQGGVL  199

Query  130  SPLLANIFLHLGFDQWMKENYPHIHFERYADDIVVHCRSLKQLQWIKKRIEQRLKLCKLS  189
            SPLL N+F+H +FD WM+   P+  F RYADD VVHCRS KQ + + + I  RL  C L+
Sbjct  200  SPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMRSIASRLAACGLT  259

Query  190  LNDKKTRVVYCKDSRRSGEWTCQSFDFLGYTFRPRSSRNHRGELFVSFSPAISRKASKSL  249
            ++  K++VVYCKDS R +     SF FLG+TFRPR + + +++LF SF P+ S  A K +
Sbjct  260  MHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSFLPGASADALKRM  319

Query  250  RQTIRREWKLQARSQHSIEELARRLNPVITGWINYYGRFCRSEMHSVLDRINTALAFWAM  309
            RQ++RR W+L+ +++ ++ ++AR  NPVI GW +YYG F R+ M +++++I+ AL  WA 
Sbjct  320  RQAVRR-WRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQHIDRALERWAR  378

Query  310  RKFKKLRGHKTRAHKWLKGVAQREPSLFAHWKY---QGWMTRAV  350
            RK+K L+ +K R  +WL  +    P LF HW+    QGW+T AV
Sbjct  379  RKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVTGQQGWITGAV  422

150) Lbys_1382 in NC_014655


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  298 bits (1117),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 193/409 (48%), Positives = 285/409 (70%), Gaps = 9/409 (2%)

Query  6    ETKQHPITKKMVLDAYRKVRANKGSAGIDTQSLEQFEERLADNLYKIWNRMTSGSYHPKA  65
             +K   I+K+ V DAY++VRAN+G+AGID +++ +FE  L+ NLYK+WNRM+SGSY P +
Sbjct  6    SAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPP  65

Query  66   VREVQIPKKSGGYRGLGIPTVSDRVAQQVVKSYLEPKVEPSFHQDSYGYRPNKSAHDALA  125
            V++V+IPK SGG R LG+PTV+DRVAQ VVK  +EP +++ FH DSYGYRP +SA +A+A
Sbjct  66   VKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVA  125

Query  126  KTVRNCGYYSWVVDLDIRGFFDNIDHELLMKAVRVYTDEKWIIMYIERWLEVG-VVREGK  184
             T   C  Y WVV++DI++ FD+I+H LLMKAVR+   E WI++YIERWL       +G 
Sbjct  126  ITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGM  185

Query  185  VHKREKGTPQGGVISPLLANIFLHFVFDKWMEKHHGNMPFERYCDDAIIHCTTWNQAVFI  244
               RE+GTPQGGV+SPLL N+F+H+ FD WM++   N PF RY DDA++HC +++QA ++
Sbjct  186  RVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYV  245

Query  245  KNAVTKRMKECKLELNSEKTKIVYCKNSIHRESNPVPVSFTFLGHTFRPLGRPTKNGWKL  304
              +++ R+  C L +++EK+K+VYCK+S +R + P  VSFTFLG TFRP    +K++ +L
Sbjct  246  MRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYP-HVSFTFLGFTFRPRKALSKQD-QL  303

Query  305  --TYFPCMSQDAkksvrekvks-vvnrrFMGKLQDIAQRLNAMARGWINYYCVYSRWTVY  361
              +++P  S DA K +R+ V+   +NR+    L D+A+  N++ +GW +YY  + R ++ 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  362  GLWYWINLKLVRWVMRR-KKMGR--RRAHQWLRKIYNQNPKLFIHWTLA  407
            G+   I+  L RW  R+ K + R  RR  QWL K+    P+LF HW ++
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

151) Lbys_1977 in NC_014655


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  298 bits (1117),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 193/409 (48%), Positives = 285/409 (70%), Gaps = 9/409 (2%)

Query  6    ETKQHPITKKMVLDAYRKVRANKGSAGIDTQSLEQFEERLADNLYKIWNRMTSGSYHPKA  65
             +K   I+K+ V DAY++VRAN+G+AGID +++ +FE  L+ NLYK+WNRM+SGSY P +
Sbjct  6    SAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPP  65

Query  66   VREVQIPKKSGGYRGLGIPTVSDRVAQQVVKSYLEPKVEPSFHQDSYGYRPNKSAHDALA  125
            V++V+IPK SGG R LG+PTV+DRVAQ VVK  +EP +++ FH DSYGYRP +SA +A+A
Sbjct  66   VKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVA  125

Query  126  KTVRNCGYYSWVVDLDIRGFFDNIDHELLMKAVRVYTDEKWIIMYIERWLEVG-VVREGK  184
             T   C  Y WVV++DI++ FD+I+H LLMKAVR+   E WI++YIERWL       +G 
Sbjct  126  ITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGM  185

Query  185  VHKREKGTPQGGVISPLLANIFLHFVFDKWMEKHHGNMPFERYCDDAIIHCTTWNQAVFI  244
               RE+GTPQGGV+SPLL N+F+H+ FD WM++   N PF RY DDA++HC +++QA ++
Sbjct  186  RVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYV  245

Query  245  KNAVTKRMKECKLELNSEKTKIVYCKNSIHRESNPVPVSFTFLGHTFRPLGRPTKNGWKL  304
              +++ R+  C L +++EK+K+VYCK+S +R + P  VSFTFLG TFRP    +K++ +L
Sbjct  246  MRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYP-HVSFTFLGFTFRPRKALSKQD-QL  303

Query  305  --TYFPCMSQDAkksvrekvks-vvnrrFMGKLQDIAQRLNAMARGWINYYCVYSRWTVY  361
              +++P  S DA K +R+ V+   +NR+    L D+A+  N++ +GW +YY  + R ++ 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  362  GLWYWINLKLVRWVMRR-KKMGR--RRAHQWLRKIYNQNPKLFIHWTLA  407
            G+   I+  L RW  R+ K + R  RR  QWL K+    P+LF HW ++
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

152) Lbys_1978 in NC_014655


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  298 bits (1117),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 193/409 (48%), Positives = 285/409 (70%), Gaps = 9/409 (2%)

Query  6    ETKQHPITKKMVLDAYRKVRANKGSAGIDTQSLEQFEERLADNLYKIWNRMTSGSYHPKA  65
             +K   I+K+ V DAY++VRAN+G+AGID +++ +FE  L+ NLYK+WNRM+SGSY P +
Sbjct  6    SAKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPP  65

Query  66   VREVQIPKKSGGYRGLGIPTVSDRVAQQVVKSYLEPKVEPSFHQDSYGYRPNKSAHDALA  125
            V++V+IPK SGG R LG+PTV+DRVAQ VVK  +EP +++ FH DSYGYRP +SA +A+A
Sbjct  66   VKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVA  125

Query  126  KTVRNCGYYSWVVDLDIRGFFDNIDHELLMKAVRVYTDEKWIIMYIERWLEVG-VVREGK  184
             T   C  Y WVV++DI++ FD+I+H LLMKAVR+   E WI++YIERWL       +G 
Sbjct  126  ITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFETDDGM  185

Query  185  VHKREKGTPQGGVISPLLANIFLHFVFDKWMEKHHGNMPFERYCDDAIIHCTTWNQAVFI  244
               RE+GTPQGGV+SPLL N+F+H+ FD WM++   N PF RY DDA++HC +++QA ++
Sbjct  186  RVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYV  245

Query  245  KNAVTKRMKECKLELNSEKTKIVYCKNSIHRESNPVPVSFTFLGHTFRPLGRPTKNGWKL  304
              +++ R+  C L +++EK+K+VYCK+S +R + P  VSFTFLG TFRP    +K++ +L
Sbjct  246  MRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYP-HVSFTFLGFTFRPRKALSKQD-QL  303

Query  305  --TYFPCMSQDAkksvrekvks-vvnrrFMGKLQDIAQRLNAMARGWINYYCVYSRWTVY  361
              +++P  S DA K +R+ V+   +NR+    L D+A+  N++ +GW +YY  + R ++ 
Sbjct  304  FTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFYRTAML  363

Query  362  GLWYWINLKLVRWVMRR-KKMGR--RRAHQWLRKIYNQNPKLFIHWTLA  407
            G+   I+  L RW  R+ K + R  RR  QWL K+    P+LF HW ++
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWRVT  412

153) SbBS512_A0056 in NC_010660


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  297 bits (1113),  Expect = 6e-82, Method: Compositional matrix adjust.
 Identities = 165/386 (43%), Positives = 259/386 (68%), Gaps = 7/386 (1%)

Query  17   ATREPPGCDGQTLKMFDQQRDGNLYKIWNRLCSGTWFPPPVLEKRIPKSNGKERILGIPT  76
            A R ++G D++T+  F+++   NLYK+WNR+ SG+ FPPPV +  IPK++G  R LG+PT
Sbjct  26   ANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPVKQVEIPKASGGTRKLGVPT  85

Query  77   VSDRIAQGAIKLFMEEKLDSIFHADSYGYRPGKSAHDALKQCAIRCWRYSWILEVDISAF  136
            V+DR+AQ  +KL++E  LDSIFH+DSYGYRPG+SA +A+     RCWRY W++E DI A 
Sbjct  86   VGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAITRERCWRYDWVVEFDIKAA  145

Query  137  FDHVKHDLVLKALEHHGMPKWVILYCRRWMEAPMQSCENGELITRTRGTPQGGVISPLLA  196
            FD+++H+L++KA+  H    W++LY  RW+ AP ++ ++G  + R RGTPQGGV+SPLL 
Sbjct  146  FDQINHGLLMKAVRLHIKEDWILLYIERWLVAPFET-DDGMRVPRERGTPQGGVLSPLLM  204

Query  197  NLFLHYAFDLWMEREYRGVPFERYADDIVVHCSRMSDATRLKNRLSERFSEVGLVLNAGK  256
            NLF+HYAFD WM+R     PF RYADD VVHC    +A  +   ++ R++  GL +++ K
Sbjct  205  NLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMRSIASRLAACGLTMHPEK  264

Query  257  TNIAYIDTFKRRN--VATSFTFLGYDFKVRTLKNFKGERYRKCMPGASNAAMRKITETIK  314
            +++ Y    +RR      SFTFLG+ F+ R   + +++ +   +PGAS  A++++ ++++
Sbjct  265  SKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSFLPGASADALKRMRQAVR  324

Query  315  KWRIHRSTAESLLDFARRYNAIVRGWIEYYGKFWSRNFNYRLWSAMQSRLLKWMQSKYRL  374
            +WR++R T  +L+D AR YN++++GW +YYG F  R     +   ++  L +W + KY+ 
Sbjct  325  RWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSFY-RTAMLGIFQHIDRALERWARRKYKA  383

Query  375  SNRKAQRK---LTLVRKEYPKLFVHW  397
             +R+ +R    L  +R   P+LF HW
Sbjct  384  LHRRKRRISQWLDKMRTVVPRLFHHW  409

154) Marme_0629 in NC_015276


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  291 bits (1091),  Expect = 3e-80, Method: Compositional matrix adjust.
 Identities = 173/406 (43%), Positives = 261/406 (65%), Gaps = 8/406 (1%)

Query  3    GKAFEIPKSLVWQSYKSVKRNKGAPGCDGQTMKQFDNNRDRNLYKIWNRLCSGSYLPPPV  62
            +K+++I+K  VW++Y+ V+ N+GA+G D++T+ +F+ +  +NLYK+WNR+ SGSY+PPPV
Sbjct  7    AKPYDIAKRTVWDAYQQVRANRGAAGIDDETIADFERDLSKNLYKLWNRMSSGSYFPPPV  66

Query  63   REKRIPKADGSDRILGIPTVSDRIAQGAVKIYLETRLDKLFHNSSFGYRPNRSAHMALTQ  122
            ++  IPKA G+ R LG+PTV+DR+AQ  VK+ +E  LD +FH+ S+GYRP RSA  A++ 
Sbjct  67   KQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAI  126

Query  123  CERNCRFNSWVLEVDIKAFFDHVDHDLVVKALEHHDMPRWVVLYCRRWMQAPMSDSSKTD  182
                C+   WV+E DIKA FD+++H+L++KA+  H    W++LY  RW+ AP    +  +
Sbjct  127  TRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWLVAPF--ETDDG  184

Query  183  ILTQRTRGTPQGGVISPILANLFLHYAFDRWMAKQRRYVPFERYADDIVCHCSRMSEAVK  242
            +   R RGTPQGGV+SP+L NLF+HYAFD WM +     PF RYADD V HC    +A  
Sbjct  185  MRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVHCRSRKQAEY  244

Query  243  LKEAIQRRMEEVGLSINEAKSNVVYIDTFPRHNV--KKVFTFLGYDFKVRTLRRKDGCLF  300
            +  +I  R+   GL+++  KS+VVY     R+       FTFLG+ F+ R    K++ LF
Sbjct  245  VMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRKALSKQDQLF  304

Query  301  RKCAAGASMTAMKRITKTITSWRVHRSSGATLKELAQRHNASLRGWIHYYGKFWYRHFSY  360
                +GAS  A+KR+ +++  WR++R +  TL ++A+  N+ ++GW +YYG F YR    
Sbjct  305  TSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQYYGSF-YRTAML  363

Query  361  RIWSVFQSRLIKWARCKLKIGTREAERK---LDQVRKRMPTLFAHW  403
             I   ++  L +WAR K K   R   R    LD++R  +P LF HW
Sbjct  364  GIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHW  409

155) ZPR_3982 in NC_014041


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  289 bits (1081),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 164/379 (44%), Positives = 258/379 (69%), Gaps = 12/379 (3%)

Query  35   GQSLQNFRENLSGNLYKIWNRMTSGSYFPPVVKEVRITKKTGGFRSLGIPTVSDRIAQQV  94
            ++++ +F  +LS NLYK+WNRM+SGSYFPP VK+V I K +GG R LG+PTV+DR+AQ V
Sbjct  35   DETIADFERDLSKNLYKLWNRMSSGSYFPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTV  94

Query  95   IKSYLEPKVESSFHQNSYGYRPRKSAHQALEKTVSRCGYYSWVVDLDIRGFFDNIDHTLL  154
            +K  +EP ++S FH +SYGYRP +SA QA+  T  RC  Y WVV++DI++ FD+I+H LL
Sbjct  95   VKLLIEPELDSIFHSDSYGYRPGRSAKQAVAITRERCWRYDWVVEFDIKAAFDQINHGLL  154

Query  155  MKAVERYTKEKWVLMYIGRWLKTGVSREGEI-TDRIKGTPQGGVISPLLANIFLHFAFDK  213
            MKAV    KE W+L+YI RWL +    ++ +   R +GTPQGGV+SPLL N+F+H+AFD 
Sbjct  155  MKAVRLHIKEDWILLYIERWLVAPFETDDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDT  214

Query  214  WMQIHHSNMPFERYCDDAIIHCTSEKQAYFIREAVSKRMKACKLELNSEKTHIVYCKNHV  273
            WMQ   +N PF RY DDA++HC S KQA ++  +++ R+ AC L +++EK+ +VYCK+  
Sbjct  215  WMQRTSPNCPFARYADDAVVHCRSRKQAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSN  274

Query  274  HSESHKNTSFDFLGYTFRPLRRPTKNGWKLTYFPVMSHASKKEARRRLKKVV-----NRK  328
            +  +  + SF FLG+TFRP +  +K++     F     ++  +A +R+++ V     NR+
Sbjct  275  RRAGYPHVSFTFLGFTFRPRKALSKQD---QLFTSFLPGASADALKRMRQAVRRWRLNRQ  331

Query  329  FRGSIQELAQIINPMIRGWYQYFCKYSKWTTRGLWYWLNRKIVRWIRR-YR--KRSRVQA  385
             + ++ ++A++ NP+I+GW QY+  + + +  G+   ++R + RW RR Y+   R + + 
Sbjct  332  THVTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQHIDRALERWARRKYKALHRRKRRI  391

Query  386  RKWLKNVYKTNPQLFEHWK  404
             +WL ++    P+LF+HW+
Sbjct  392  SQWLDKMRTVVPRLFHHWR  410

156) SFxv_4871 in NC_017319


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  289 bits (1081),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 159/371 (43%), Positives = 248/371 (67%), Gaps = 7/371 (1%)

Query  2    FDQQRDGNLYKIWNRLCSGTWFPPPVLEKRIPKSNGKERILGIPTVSDRIAQGAIKLFME  61
            F+++   NLYK+WNR+ SG+ FPPPV +  IPK++G  R LG+PTV+DR+AQ  +KL++E
Sbjct  41   FERDLSKNLYKLWNRMSSGSYFPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIE  100

Query  62   EKLDPIFHADSYGYRPGKSAHDALKQCAIRCWRYSWILEVDISAFFDHVRHDLVLKALEH  121
              LD+IFH+DSYGYRPG+SA +A+     RCWRY W++E DI A FD++ H+L++KA+  
Sbjct  101  PELDSIFHSDSYGYRPGRSAKQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRL  160

Query  122  HGMPKWVILYCRRWMEAPMQSCENGELITRTRGTPQGGVISPLLANLFLHYAFDLWMERE  181
            H    W++LY  RW+ AP ++ ++G  + R RGTPQGGV+SPLL NLF+HYAFD WM+R 
Sbjct  161  HIKEDWILLYIERWLVAPFET-DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRT  219

Query  182  YRGVPFERYADDIVVHCSRMSDATRLKNRLSERFSEVGLVLNAGKTNIAYIDTFKRRN--  239
                PF RYADD VVHC    +A  +   ++ R++  GL +++ K+++ Y    +RR   
Sbjct  220  SPNCPFARYADDAVVHCRSRKQAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGY  279

Query  240  VATSFTFLGYDFKVRTLKNFNGERYRKCMPGASNAAMRKITETIKKWRIHRSTAESLLDF  299
               SFTFLG+ F+ R   + +++ +   +PGAS  A++++ +++++WR++R T  +L+D 
Sbjct  280  PHVSFTFLGFTFRPRKALSKQDQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDV  339

Query  300  ARRYNAIVRGWIEYYGKFWSRNFNYRLWSAMQSRLLKWMQSKYRLSNRKAQRK---LTLV  356
            AR YN++++GW +YYG F  R     +   ++  L +W + KY+  +R+ +R    L  +
Sbjct  340  ARLYNPVIQGWWQYYGSF-YRTAMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKM  398

Query  357  RKEYPKLFVHW  367
            R   P+LF HW
Sbjct  399  RTVVPRLFHHW  409

157) SDY_P034 in NC_007607


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  288 bits (1079),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 159/371 (43%), Positives = 247/371 (67%), Gaps = 7/371 (1%)

Query  2    FDQQRDGNLYKIWNRLCSGTWFPPPVLEKRIPKSNGKERILGIPTVSDRIAQGAIKLFME  61
            F+++   NLYK+WNR+ SG+ FPPPV +  IPK++G  R LG+PTV+DR+AQ  +KL++E
Sbjct  41   FERDLSKNLYKLWNRMSSGSYFPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIE  100

Query  62   EKLDPIFHADSYGYRPGKSAHDALKQCAIRCWRYSWILEVDISAFFDHVRHDLVLKALEH  121
              LD+IFH+DSYGYRPG+SA +A+     RCWRY W++E DI A FD++ H+L++KA+  
Sbjct  101  PELDSIFHSDSYGYRPGRSAKQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRL  160

Query  122  HGMPKWVILYCRRWMEAPMQSCENGEVITRTRGTPQGGVISPLLANLFLHYAFDLWMERE  181
            H    W++LY  RW+ AP ++ ++G  + R RGTPQGGV+SPLL NLF+HYAFD WM+R 
Sbjct  161  HIKEDWILLYIERWLVAPFET-DDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRT  219

Query  182  YRGVPFERYADDIVVHCSRMSDATRLKNRLSERFSEVGLVLNAGKTNTAYIDTFKRRN--  239
                PF RYADD VVHC    +A  +   ++ R++  GL +++ K++  Y    +RR   
Sbjct  220  SPNCPFARYADDAVVHCRSRKQAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGY  279

Query  240  VATSFTFLGYDFKVRTLKNFKGERYRKCMPGASNAAMRKITETIKKWRIHRSTAESLLDF  299
               SFTFLG+ F+ R   + +++ +   +PGAS  A++++ +++++WR++R T  +L+D 
Sbjct  280  PHVSFTFLGFTFRPRKALSKQDQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDV  339

Query  300  ARRYNAIVRGWIEYYGKFWSRNFNYRLWSAMQSRLLKWMQSKYRLSNRKAQRK---LTLV  356
            AR YN++++GW +YYG F  R     +   ++  L +W + KY+  +R+ +R    L  +
Sbjct  340  ARLYNPVIQGWWQYYGSF-YRTAMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKM  398

Query  357  RKEDPKLFVHW  367
            R   P+LF HW
Sbjct  399  RTVVPRLFHHW  409

158) SACE_2315 in NC_009142


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  287 bits (1073),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 161/311 (52%), Positives = 232/311 (75%), Gaps = 1/311 (0%)

Query  6    LEAKVEPIFHPDSYGYRPNRSALDAVAACRRRCWKYDWVIDLDIQKFFDSVPWDLVVKAV  65
            +E+ +++IFH+DSYGYRP RSA +AVA  R RCW+YDWV+++DI+  FD +  +L++KAV
Sbjct  99   IEPELDSIFHSDSYGYRPGRSAKQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAV  158

Query  66   EAHTDQRWVVLYVKRWLHASLQLPDGTLQQRDRGTPQGSAVSPVLANLFLHYAFDSWMAR  125
              H  + W++LY+ RWL A+++  DG    R+RGTPQG+ +SP+L NLF+HYAFD+WM R
Sbjct  159  RLHIKEDWILLYIERWLVAPFETDDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQR  218

Query  126  EHPNIPFERYVDDAVVHCVSEDQarrmraaiadrmaEVGLRMHPDKTKIVYCQDSKRRLS  185
              PN PF RY DDAVVHC S  QA  +  +IA R+A  GL MHP+K+K+VYC+DS+RR +
Sbjct  219  TSPNCPFARYADDAVVHCRSRKQAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAG  278

Query  186  YENTAFTFLGFTFRPRVARSKHGNKFTGFLPAISKGALNKISREVRSWRLHLRTGHTFAA  245
            Y + +FTFLGFTFRPR A SK+++ FT+FLP+ S +AL+++ + VR WRL+ +T  T+  
Sbjct  279  YPHVSFTFLGFTFRPRKALSKQDQLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVD  338

Query  246  LARRINPVVRGWMQYYGAFYRSALHPFLQRINAYLMRWIRKKYKRLRQSKKAKACW-ARI  304
            +AR  NPV++GW QYYG+FYR+A+  ++Q+I+  L RW R+KYK L++ K+  + W  ++
Sbjct  339  VARLYNPVIQGWWQYYGSFYRTAMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKM  398

Query  305  TTQHPRMFAHW  315
             T  PR+F HW
Sbjct  399  RTVVPRLFHHW  409

159) CLS_19260 in NC_021047


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  278 bits (1041),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 142/316 (45%), Positives = 215/316 (69%), Gaps = 0/316 (0%)

Query  2    VARAYVERAVEPMFCEDSYGYRPHKSALDAVEKTRKRCWKYDYVIELDVKGLFDNIDHEL  61
            V +  +E  ++++F  DSYGYRP +SA +AV  TR RCW+YD V+E+D+K+ FD+I+H L
Sbjct  94   VVKLLIEPELDSIFHSDSYGYRPGRSAKQAVAITRERCWRYDWVVEFDIKAAFDQINHGL  153

Query  62   LMRVVRRHVKEPWICLYIERWLKSPFVLPDGSRIERESGTPQGGVISPVLANMFLHYVFD  121
            LM+ VR H+KE WI LYIERWL +PF   DG R+ RE GTPQGGV+SP+L N+F+HY FD
Sbjct  154  LMKAVRLHIKEDWILLYIERWLVAPFETDDGMRVPRERGTPQGGVLSPLLMNLFMHYAFD  213

Query  122  MWMKRNFPQAPFERYADDGVVHCRTKEEALYIKKKLVKRFEECKLELHPVKTRIVYCKDK  181
             WM+R  P+ PF RYADD+VVHCR++ +A Y+ + +  R+  C L +HP K+++VYCKD 
Sbjct  214  TWMQRTSPNCPFARYADDAVVHCRSRKQAEYVMRSIASRLAACGLTMHPEKSKVVYCKDS  273

Query  182  DRTKEEELAEFDFLGYTFKAVYIKCKDGVMRNNFIASVSKTAAKGFRDKIKALEIHKRTG  241
            +R        F FLG+TF++     K++ +  +F+++ S  A K  R+ ++   ++++T 
Sbjct  274  NRRAGYPHVSFTFLGFTFRPRKALSKQDQLFTSFLPGASADALKRMRQAVRRWRLNRQTH  333

Query  242  CKIDMIAELLNPMIRGWMNYFGKFNPSAMKNTLQCIECRLIKWAMCKYKSFRGRRQRAEK  301
              +  +A L NP+I+GW +Y+G F  +AM   +Q I+  L +WA  KYK+++ R++R  +
Sbjct  334  VTLVDVARLYNPVIQGWWQYYGSFYRTAMLGIFQHIDRALERWARRKYKALHRRKRRISQ  393

Query  302  WLSSIRKREPKLFAHW  317
            WL  +R   P+LF HW
Sbjct  394  WLDKMRTVVPRLFHHW  409

160) ZPR_1303 in NC_014041


> EF611303|17|G17|148807454|ABR13526.1|Pseudomonas_aeruginosa_PSE9|+|16301..17569|-|-|reverse 
transcriptase
Length=422

 Score =  268 bits (1001),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 154/358 (44%), Positives = 241/358 (68%), Gaps = 12/358 (3%)

Query  1    MTSGSYFPPVVKEVRITKKTGGFRSLGIPTVSDRIAQQVIKSYLEPKVESSFHQNSYGYR  60
            M+SGSYFPP VK+V I K +GG R LG+PTV+DR+AQ V+K  +EP ++S FH +SYGYR
Sbjct  56   MSSGSYFPPPVKQVEIPKASGGTRKLGVPTVGDRVAQTVVKLLIEPELDSIFHSDSYGYR  115

Query  61   PRKSAHQALEKTVSRCGYYSWVVDLDIRGFFDNIDHTLLMKAVERYTKEKWVLMYIGRWL  120
            P +SA QA+  T  RC  Y WVV++DI++ FD+I+H LLMKAV    KE W+L+YI RWL
Sbjct  116  PGRSAKQAVAITRERCWRYDWVVEFDIKAAFDQINHGLLMKAVRLHIKEDWILLYIERWL  175

Query  121  KTGVSREGEI-TDRIKGTPQGGVISPLLANIFLHFAFDKWMQIHHSNMPFERYCDDAIIH  179
             +    ++ +   R +GTPQGGV+SPLL N+F+H+AFD WMQ   +N PF RY DDA++H
Sbjct  176  VAPFETDDGMRVPRERGTPQGGVLSPLLMNLFMHYAFDTWMQRTSPNCPFARYADDAVVH  235

Query  180  CTSEKQAYFIREAVSKRMKACKLELNSEKTHIVYCKNHVHSESHKNTSFDFLGYTFRPLR  239
            C S KQA ++  +++ R+ AC L +++EK+ +VYCK+  +  +  + SF FLG+TFRP +
Sbjct  236  CRSRKQAEYVMRSIASRLAACGLTMHPEKSKVVYCKDSNRRAGYPHVSFTFLGFTFRPRK  295

Query  240  RPTKNGWKLTYFPVMSHASKKEARRRLKKVV-----NRKFRGSIQELAQIINPMIRGWYQ  294
              +K++     F     ++  +A +R+++ V     NR+ + ++ ++A++ NP+I+GW Q
Sbjct  296  ALSKQD---QLFTSFLPGASADALKRMRQAVRRWRLNRQTHVTLVDVARLYNPVIQGWWQ  352

Query  295  YFCKYSKWTTRGLWYWLNRKIVRWIRR-YR--KRSRVQARKWLKNVYKTNPQLFEHWK  349
            Y+  + + +  G+   ++R + RW RR Y+   R + +  +WL ++    P+LF+HW+
Sbjct  353  YYGSFYRTAMLGIFQHIDRALERWARRKYKALHRRKRRISQWLDKMRTVVPRLFHHWR  410