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Homologs of traU gene of AY803022

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) NGK_1074
( YP_002001699.1 )

protein TraU

NC_011035
(Neisseria gonorrhoeae NCCP11945)

5e-156

100

2) Ajs_4174
( YP_974010.1 )

TraU family protein

NC_008765
(Acidovorax sp. JS42)

2e-78

3) Alide2_4773
( YP_004390587.1 )

TraU family protein

NC_015423
(Alicycliphilus denitrificans K601)

2e-78

4) RBRH_00653
( YP_004030626.1 )

TraU protein

NC_014723
(Burkholderia rhizoxinica HKI 454)

2e-77

5) BJAB07104_p0045
( YP_008211268.1 )

hypothetical protein

NC_021727
(Acinetobacter baumannii BJAB07104)

1e-74

6) BJAB0868_p0055
( YP_008215087.1 )

hypothetical protein

NC_021731
(Acinetobacter baumannii BJAB0868)

1e-74

7) ABTJ_p0038
( YP_006291711.1 )

TraU protein

NC_017848
(Acinetobacter baumannii MDR-TJ)

1e-74

8) ACICU_p0081
( YP_001840935.1 )

TraU family protein

NC_010606
(Acinetobacter baumannii ACICU)

8e-74

9) traU
( YP_002235468.1 )

putative TraU conjugative transfer protein precursor

NC_011003
(Burkholderia cenocepacia J2315)

9e-73

10) Galf_0942
( YP_003846738.1 )

TraU family protein

NC_014394
(Gallionella capsiferriformans ES-2)

1e-70

11) Bcen2424_6806
( YP_840428.1 )

TraU family protein

NC_008545
(Burkholderia cenocepacia HI2424)

1e-69

12) bglu_4p0290
( YP_002913230.1 )

conjugal DNA transfer protein TraU

NC_012725
(Burkholderia glumae BGR1)

2e-69

13) bgla_2p0250
( YP_004350946.1 )

TraU family protein

NC_015377
(Burkholderia gladioli BSR3)

8e-70

14) bglu_3p0250
( YP_002907652.1 )

TraU family protein

NC_012720
(Burkholderia glumae BGR1)

2e-69

15) Daro_2325
( YP_285531.1 )

hypothetical protein

NC_007298
(Dechloromonas aromatica RCB)

4e-69

16) Daro_2658
( YP_285858.1 )

hypothetical protein

NC_007298
(Dechloromonas aromatica RCB)

7e-67

17) traU
( YP_160810.1 )

hypothetical protein

NC_006513
(Aromatoleum aromaticum EbN1)

3e-66

18) ABK1_3762
( YP_005516334.1 )

TraU family protein precursor

NC_017163
(Acinetobacter baumannii 1656-2)

2e-64

19) Alide2_3352
( YP_004389208.1 )

TraU family protein

NC_015422
(Alicycliphilus denitrificans K601)

1e-62

20) DelCs14_1686
( YP_004487070.1 )

TraU family protein

NC_015563
(Delftia sp. Cs1-4)

1e-62

21) Ajs_1530
( YP_985799.1 )

TraU family protein

NC_008782
(Acidovorax sp. JS42)

2e-62

22) Alide2_2813
( YP_004388677.1 )

TraU family protein

NC_015422
(Alicycliphilus denitrificans K601)

4e-62

• Sequence Alignments

1) NGK_1074 in NC_011035


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  543 bits (2050),  Expect = 5e-156, Method: Compositional matrix adjust.
 Identities = 372/372 (100%), Positives = 372/372 (100%), Gaps = 0/372 (0%)

Query  1    MKIFVTplkllipllllplFSISHAAEAVPTAPIPNKLTCQGKMLNPINDICWSCMFPIK  60
            MKIFVTPLKLLIPLLLLPLFSISHAAEAVPTAPIPNKLTCQGKMLNPINDICWSCMFPIK
Sbjct  1    MKIFVTPLKLLIPLLLLPLFSISHAAEAVPTAPIPNKLTCQGKMLNPINDICWSCMFPIK  60

Query  61   IGGKINLNMDNQEDNGSSPNNWFCSCTHPSRSGVTVSFWEPTHLVEVVRTPFCMVSLGGI  120
            IGGKINLNMDNQEDNGSSPNNWFCSCTHPSRSGVTVSFWEPTHLVEVVRTPFCMVSLGGI
Sbjct  61   IGGKINLNMDNQEDNGSSPNNWFCSCTHPSRSGVTVSFWEPTHLVEVVRTPFCMVSLGGI  120

Query  121  SLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNEQHDQHNAFYQVHWYKNPVVFWLEA  180
            SLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNEQHDQHNAFYQVHWYKNPVVFWLEA
Sbjct  121  SLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNEQHDQHNAFYQVHWYKNPVVFWLEA  180

Query  181  LLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPDSalfanvvaqaacaadcvkaaaGF  240
            LLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPDSALFANVVAQAACAADCVKAAAGF
Sbjct  181  LLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPDSALFANVVAQAACAADCVKAAAGF  240

Query  241  PFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMAARIQTKMHRDLVAWRTSGRDALCG  300
            PFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMAARIQTKMHRDLVAWRTSGRDALCG
Sbjct  241  PFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMAARIQTKMHRDLVAWRTSGRDALCG  300

Query  301  YKLNPVMDKQNYKMAMTYPVAARKFRGRCCEPIGRSTLVRDSGKAFPYKGNQFAFQLFRK  360
            YKLNPVMDKQNYKMAMTYPVAARKFRGRCCEPIGRSTLVRDSGKAFPYKGNQFAFQLFRK
Sbjct  301  YKLNPVMDKQNYKMAMTYPVAARKFRGRCCEPIGRSTLVRDSGKAFPYKGNQFAFQLFRK  360

Query  361  RDCCGAYKFKTN  372
            RDCCGAYKFKTN
Sbjct  361  RDCCGAYKFKTN  372

2) Ajs_4174 in NC_008765


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  285 bits (1068),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 147/332 (45%), Positives = 237/332 (72%), Gaps = 23/332 (6%)

Query  24   VCQGKFANPITDICWSCLFPLTLGGTPIMTMG--QEDTGNPDGFLCTCTNPLRIGIKTGF  81
             CQGK  NPI DICWSC+FP+ +GG   + M+  +++ ++P+  +C+CT+P R G+  +F
Sbjct  39   TCQGKMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPNNWFCSCTHPSRSGVTVSF  98

Query  82   WEPARRVDVTRTPYCFVSLGGIKL-----DPGIRAPEGEI---------------RLQQD  121
            WEP++ V+V RTP+C VSLGGI L     D +  +  +++               R +Q+
Sbjct  99   WEPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNEQH  158

Query  122  NTKQSNYQVHWYADPILYWLEVILDNPCLETGSFDVAYITEVDPTWNDDELTMLLNPETF  181
            +  ++ YQVHWY +P+++WLE +LDN C+E G++D++ +TE+DPTW+   L++   P++ 
Sbjct  159  DQHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPDSA  218

Query  182  LFGNPIAQAACAGDCVLSSAGFGSNALFWCAGCQGSIYPFNGHVQAHVSHVQASSLLVQR  241
            LF+N +AQAACA+DCV ++AGF  N L+WCAGC+G+IYP++G + +H S+VQA+ L+  R
Sbjct  219  LFANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMAAR  278

Query  242  MTAKLHREFLMWGTSGADGLCGIYPEPVMDKTQYKYQMLYPIPQTEKINGRCCQPYGRTT  301
            + +K+HR+++ W TSG D+LCG   +PVMDK +YK  M YP++ + K+ GRCC+P GR+T
Sbjct  279  IQTKMHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYPVA-ARKFRGRCCEPIGRST  337

Query  302  AIWGAGKSYPYAGEDFAYMIFRKKNCCLGVGF  333
             ++++GK++PY G++FA+ +FRK++CC +  F
Sbjct  338  LVRDSGKAFPYKGNQFAFQLFRKRDCCGAYKF  369

3) Alide2_4773 in NC_015423


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  285 bits (1068),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 147/332 (45%), Positives = 237/332 (72%), Gaps = 23/332 (6%)

Query  24   VCQGKFANPITDICWSCLFPLTLGGTPIMTMG--QEDTGNPDGFLCTCTNPLRIGIKTGF  81
             CQGK  NPI DICWSC+FP+ +GG   + M+  +++ ++P+  +C+CT+P R G+  +F
Sbjct  39   TCQGKMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPNNWFCSCTHPSRSGVTVSF  98

Query  82   WEPARRVDVTRTPYCFVSLGGIKL-----DPGIRAPEGEI---------------RLQQD  121
            WEP++ V+V RTP+C VSLGGI L     D +  +  +++               R +Q+
Sbjct  99   WEPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNEQH  158

Query  122  NTKQSNYQVHWYADPILYWLEVILDNPCLETGSFDVAYITEVDPTWNDDELTMLLNPETF  181
            +  ++ YQVHWY +P+++WLE +LDN C+E G++D++ +TE+DPTW+   L++   P++ 
Sbjct  159  DQHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPDSA  218

Query  182  LFGNPIAQAACAGDCVLSSAGFGSNALFWCAGCQGSIYPFNGHVQAHVSHVQASSLLVQR  241
            LF+N +AQAACA+DCV ++AGF  N L+WCAGC+G+IYP++G + +H S+VQA+ L+  R
Sbjct  219  LFANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMAAR  278

Query  242  MTAKLHREFLMWGTSGADGLCGIYPEPVMDKTQYKYQMLYPIPQTEKINGRCCQPYGRTT  301
            + +K+HR+++ W TSG D+LCG   +PVMDK +YK  M YP++ + K+ GRCC+P GR+T
Sbjct  279  IQTKMHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYPVA-ARKFRGRCCEPIGRST  337

Query  302  AIWGAGKSYPYAGEDFAYMIFRKKNCCLGVGF  333
             ++++GK++PY G++FA+ +FRK++CC +  F
Sbjct  338  LVRDSGKAFPYKGNQFAFQLFRKRDCCGAYKF  369

4) RBRH_00653 in NC_014723


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  281 bits (1053),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 148/332 (45%), Positives = 235/332 (71%), Gaps = 23/332 (6%)

Query  24   VCQGKFANPITDICWSCLFPITLGGIRIMTMG--QEDTGNPGGFLCTCTDPLRIGIKTAF  81
             CQGK  NPI DICWSC+FPI +GG   + M+  +++ ++P   +C+CT+P R G+  +F
Sbjct  39   TCQGKMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPNNWFCSCTHPSRSGVTVSF  98

Query  82   WEPARRVDVTRTPYCFVSLGGI-----KIDPGIRAPEGEV---------------RLQQD  121
            WEP++ V+V RTP+C VSLGGI     K D +  +  ++V               R +Q+
Sbjct  99   WEPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNEQH  158

Query  122  NTKQSSYQVHWYIDPILYWLEVLLDFICLETGSFDVAYITEVDPTWNDDELTMLLNPETF  181
            +  ++ YQVHWY +P+++WLE LLD  C+E G++D++ +TE+DPTW+   L++   P++ 
Sbjct  159  DQHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPDSA  218

Query  182  LFGNPIAQAACAGDCVLSSFGFGSNVLFWCAGCQGSIYPLNGHVQAHVSHVQASSLLVQR  241
            LF+N +AQAACA+DCV ++ GF  N L+WCAGC+G+IYPL+G + +H S+VQA+ L+  R
Sbjct  219  LFANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMAAR  278

Query  242  MTAKLHREFLMWGTSGEDGLCGIYPSPVMDKTQYKYHMLYPIPQTQKINRRCCQPYGRTT  301
            + +K+HR+++ W TSG D+LCG   +PVMDK +YK  M YP++ ++K+  RCC+P GR+T
Sbjct  279  IQTKMHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYPVA-ARKFRGRCCEPIGRST  337

Query  302  ALWGAGRSYPYKGEDFAYMIFRKKNCCLGVGF  333
             ++++G+++PYKG++FA+ +FRK++CC +  F
Sbjct  338  LVRDSGKAFPYKGNQFAFQLFRKRDCCGAYKF  369

5) BJAB07104_p0045 in NC_021727


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  272 bits (1018),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 155/346 (45%), Positives = 240/346 (70%), Gaps = 25/346 (7%)

Query  15   SFAFAAEDNNSESNQTNLRCPGEFANPITDICWSCIFPISMGG-MPLWTGGQEDN-RNPS  72
            S++ AAE   + +   +L C G   NPI DICWSC+FPI +GG + L  + QEDN  +P+
Sbjct  21   SISHAAEAVPTAPIPNKLTCQGKMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPN  80

Query  73   QLFCSCAVPRIYLGIQTGFWEPVRRVDVTRTPYCMVSLGT------QLDVGVTAPEGEV-  125
            + FCSC+ P    G+  +FWEP + V+V RTP+CMVSLG       + D + T+  ++V 
Sbjct  81   NWFCSCTHPSR-SGVTVSFWEPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVS  139

Query  126  --------------RLHSDNDRHSFYQAHWYTDPIMMWLEIIYEHPCTETGYFDIGYMTE  171
                          R + ++++++FYQ HWY +P++ WLE + ++ C E G +DIG MTE
Sbjct  140  NKIQNLFGGSHKRGRNEQHDQHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTE  199

Query  172  LDPMWNDDELSAILSPEAALFTNPVTQAACAGDCVMASAGFGSNALFWCAGCNGSIYPLN  231
            LDP W+   L+   +P++ALF+N V+QAACA+DCV A+AGF  N L+WCAGC+G+IYPL+
Sbjct  200  LDPTWKYPSLAVYQAPDSALFANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLS  259

Query  232  GNVGAHVSHIQASSLIAQRLAAKMHRQFLTWGTNGEAGLCGVYPQPVMDKTAYKYQMLYP  291
            G +++H S++QA+ L+A R+ +KMHR++++W T+G  +LCG   +PVMDK  YK  M YP
Sbjct  260  GWMSGHFSEVQAAKLMAARIQTKMHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYP  319

Query  292  VPQTKKINGKCCQPFGRTTTVWGAGKSWPVTGEHFSYELFRKKNCC  337
            V+ ++K+ G+CC+P+GR+T V+++GK+ P  G++F+++LFRK++CC
Sbjct  320  VA-ARKFRGRCCEPIGRSTLVRDSGKAFPYKGNQFAFQLFRKRDCC  364

6) BJAB0868_p0055 in NC_021731


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  272 bits (1018),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 155/346 (45%), Positives = 240/346 (70%), Gaps = 25/346 (7%)

Query  15   SFAFAAEDNNSESNQTNLRCPGEFANPITDICWSCIFPISMGG-MPLWTGGQEDN-RNPS  72
            S++ AAE   + +   +L C G   NPI DICWSC+FPI +GG + L  + QEDN  +P+
Sbjct  21   SISHAAEAVPTAPIPNKLTCQGKMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPN  80

Query  73   QLFCSCAVPRIYLGIQTGFWEPVRRVDVTRTPYCMVSLGT------QLDVGVTAPEGEV-  125
            + FCSC+ P    G+  +FWEP + V+V RTP+CMVSLG       + D + T+  ++V 
Sbjct  81   NWFCSCTHPSR-SGVTVSFWEPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVS  139

Query  126  --------------RLHSDNDRHSFYQAHWYTDPIMMWLEIIYEHPCTETGYFDIGYMTE  171
                          R + ++++++FYQ HWY +P++ WLE + ++ C E G +DIG MTE
Sbjct  140  NKIQNLFGGSHKRGRNEQHDQHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTE  199

Query  172  LDPMWNDDELSAILSPEAALFTNPVTQAACAGDCVMASAGFGSNALFWCAGCNGSIYPLN  231
            LDP W+   L+   +P++ALF+N V+QAACA+DCV A+AGF  N L+WCAGC+G+IYPL+
Sbjct  200  LDPTWKYPSLAVYQAPDSALFANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLS  259

Query  232  GNVGAHVSHIQASSLIAQRLAAKMHRQFLTWGTNGEAGLCGVYPQPVMDKTAYKYQMLYP  291
            G +++H S++QA+ L+A R+ +KMHR++++W T+G  +LCG   +PVMDK  YK  M YP
Sbjct  260  GWMSGHFSEVQAAKLMAARIQTKMHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYP  319

Query  292  VPQTKKINGKCCQPFGRTTTVWGAGKSWPVTGEHFSYELFRKKNCC  337
            V+ ++K+ G+CC+P+GR+T V+++GK+ P  G++F+++LFRK++CC
Sbjct  320  VA-ARKFRGRCCEPIGRSTLVRDSGKAFPYKGNQFAFQLFRKRDCC  364

7) ABTJ_p0038 in NC_017848


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  272 bits (1018),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 155/346 (45%), Positives = 240/346 (70%), Gaps = 25/346 (7%)

Query  15   SFAFAAEDNNSESNQTNLRCPGEFANPITDICWSCIFPISMGG-MPLWTGGQEDN-RNPS  72
            S++ AAE   + +   +L C G   NPI DICWSC+FPI +GG + L  + QEDN  +P+
Sbjct  21   SISHAAEAVPTAPIPNKLTCQGKMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPN  80

Query  73   QLFCSCAVPRIYLGIQTGFWEPVRRVDVTRTPYCMVSLGT------QLDVGVTAPEGEV-  125
            + FCSC+ P    G+  +FWEP + V+V RTP+CMVSLG       + D + T+  ++V 
Sbjct  81   NWFCSCTHPSR-SGVTVSFWEPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVS  139

Query  126  --------------RLHSDNDRHSFYQAHWYTDPIMMWLEIIYEHPCTETGYFDIGYMTE  171
                          R + ++++++FYQ HWY +P++ WLE + ++ C E G +DIG MTE
Sbjct  140  NKIQNLFGGSHKRGRNEQHDQHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTE  199

Query  172  LDPMWNDDELSAILSPEAALFTNPVTQAACAGDCVMASAGFGSNALFWCAGCNGSIYPLN  231
            LDP W+   L+   +P++ALF+N V+QAACA+DCV A+AGF  N L+WCAGC+G+IYPL+
Sbjct  200  LDPTWKYPSLAVYQAPDSALFANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLS  259

Query  232  GNVGAHVSHIQASSLIAQRLAAKMHRQFLTWGTNGEAGLCGVYPQPVMDKTAYKYQMLYP  291
            G +++H S++QA+ L+A R+ +KMHR++++W T+G  +LCG   +PVMDK  YK  M YP
Sbjct  260  GWMSGHFSEVQAAKLMAARIQTKMHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYP  319

Query  292  VPQTKKINGKCCQPFGRTTTVWGAGKSWPVTGEHFSYELFRKKNCC  337
            V+ ++K+ G+CC+P+GR+T V+++GK+ P  G++F+++LFRK++CC
Sbjct  320  VA-ARKFRGRCCEPIGRSTLVRDSGKAFPYKGNQFAFQLFRKRDCC  364

8) ACICU_p0081 in NC_010606


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  270 bits (1009),  Expect = 8e-74, Method: Compositional matrix adjust.
 Identities = 152/342 (45%), Positives = 239/342 (70%), Gaps = 25/342 (7%)

Query  19   AADSGSNNNGSKSLRCPGEFANPISDICWSCIFPISMGG-MPLWKGGQEDN-SNPSQLFC  76
            AA++ +    ++ L C G   NPI+DICWSC+FPI +GG + L  + QEDN S+P++ FC
Sbjct  25   AAEAVPTAPIPNKLTCQGKMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPNNWFC  84

Query  77   SCAIPRIYLGIQTGFWEPVRRVDVTRTPYCMVSLGT------ELDVGVEAPEGEV-----  125
            SC+ P    G+  +FWEP + V+V RTP+CMVSLG         D +  +  ++V     
Sbjct  85   SCTHPSR-SGVTVSFWEPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQ  143

Query  126  ----------RLHDDNNRHSFYQAHWYTDPIMMWLEVIYEHPCTETGYFDIGYMTELDPM  175
                      R ++++++++FYQ HWY +P++ WLE + ++ C E G +DIG MTELDP 
Sbjct  144  NLFGGSHKRGRNEQHDQHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPT  203

Query  176  WNDDELSAILSPEAALFTNPLTQAACAGDCVLASAGFGSNGLFWCAGCNGSIYPLNGNVG  235
            W+   L+   +P++ALF+N ++QAACA+DCV A+AGF  N L+WCAGC+G+IYPL+G ++
Sbjct  204  WKYPSLAVYQAPDSALFANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMS  263

Query  236  AHVSHIQASSLIAQRLAAKMHRQFLTWGTNGEAGLCGVYPQPIMDKTAYKYQMLYPVAQT  295
            +H S++QA+ L+A R+ +KMHR++++W T+G  +LCG   +P+MDK  YK  M YPVA +
Sbjct  264  GHFSEVQAAKLMAARIQTKMHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYPVA-A  322

Query  296  KKINGKCCQPFGRTTSVWGAGKSWPVTGEHFSYELFRKKNCC  337
            +K+ G+CC+P+GR+T V+++GK+ P  G++F+++LFRK++CC
Sbjct  323  RKFRGRCCEPIGRSTLVRDSGKAFPYKGNQFAFQLFRKRDCC  364

9) traU in NC_011003


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  266 bits (995),  Expect = 9e-73, Method: Compositional matrix adjust.
 Identities = 144/327 (45%), Positives = 221/327 (68%), Gaps = 25/327 (7%)

Query  29   NCNGKFANPITDICWSCIFPISLGGTPIIT--AGQEDGDNPGGLLCACG--PVLGIKIGF  84
             C+GK  NPI DICWSC+FPI +GG   +     +++G +P   +C+C   +  G+ ++F
Sbjct  39   TCQGKMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPNNWFCSCTHPSRSGVTVSF  98

Query  85   WEPVRRVDVTRVPYCFVSLGGI-----KIDPGIRTPEGEV---------------RMQQD  124
            WEP + V+V R P+C VSLGGI     K D +  T  ++V               R +Q+
Sbjct  99   WEPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNEQH  158

Query  125  LTKQSSYQVHWYLDPILFWLEVLLDFACLETGNFDVAYLTEIDPTWNDDELTMLLNPETF  184
               ++ YQVHWY +P++FWLE LLD  C+E G +D++ +TE+DPTW+   L++   P++ 
Sbjct  159  DQHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPDSA  218

Query  185  LFGNPIAQAACAGDCVLSTAGFGSNALFWCAGCNGSIYPFNGHVQAHVSHVQASSLLVQR  244
            LF+N +AQAACA+DCV ++AGF  N L+WCAGC+G+IYP++G + +H S+VQA+ L+  R
Sbjct  219  LFANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMAAR  278

Query  245  MTAKLHREGLLWGTMGGSGLCGSYPMPVMDKTQYKYQMLYPIPETAKTNGRCCQPYGRTT  304
            + +K+HR+ + W T G  +LCG    PVMDK +YK  M YP++ + K  GRCC+P GR+T
Sbjct  279  IQTKMHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYPVA-ARKFRGRCCEPIGRST  337

Query  305  AIWGAGKSYPYKGEDFAYMVFRKKNCC  331
             ++++GK++PYKG++FA+ +FRK++CC
Sbjct  338  LVRDSGKAFPYKGNQFAFQLFRKRDCC  364

10) Galf_0942 in NC_014394


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  259 bits (969),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 136/327 (42%), Positives = 220/327 (68%), Gaps = 24/327 (7%)

Query  27   CQGRFPNLITDICWSCIFPIKFGAGALSLPISLGQEDTPNPGGLPICMCG--INPGLKIS  84
            CQG+  N I DICWSC+FPIK+G G ++L +   +++ ++P    +C C     +G+ +S
Sbjct  40   CQGKMLNPINDICWSCMFPIKIG-GKINLNMDNQEDNGSSPNNW-FCSCTHPSRSGVTVS  97

Query  85   FWEPVRHVDVVRKPFCMTSLGGIDMNPG--------------------FNAPHGTQEIKD  124
            FWEP + V+VVR PFCM SLGGI ++                      F ++H      +
Sbjct  98   FWEPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNEQ  157

Query  125  NSSMSSFYQAHWYIDPVLVLLELVIDSPCLEQKVFDVAYLTELDPLWNDDEMTSIINPDS  184
            +   ++FYQ HWY +PV+  LE ++D+ C+E+  +D++ +TELDP W+   ++    PDS
Sbjct  158  HDQHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPDS  217

Query  185  FLFGNLVAKIACGADCVMSSMGFGSNTLFWCAGCQGSMYPLNGHVAAHIGGVQASSLIVS  244
             LF+N+VA+ AC+ADCV ++ GF  N L+WCAGC+G++YPL+G +++H++ VQA+ L+ +
Sbjct  218  ALFANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMAA  277

Query  245  RLIAKMHREGLMWAASGSSGMCGYYPQLLMDKTNYKYQMHFPVAQNKINGRCCQPLGRTT  304
            R+ +KMHR+ + W +SG  ++CGY  + +MDK NYK  M +PVA  K+ GRCC+P+GR+T
Sbjct  278  RIQTKMHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYPVAARKFRGRCCEPIGRST  337

Query  305  VIWGASKEIPAVGEDFAYMIFRKRNCC  331
            ++++++K +P  G++FA+ +FRKR+CC
Sbjct  338  LVRDSGKAFPYKGNQFAFQLFRKRDCC  364

11) Bcen2424_6806 in NC_008545


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  256 bits (955),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 144/326 (45%), Positives = 227/326 (70%), Gaps = 25/326 (7%)

Query  32   CVGRFANPITDICWECAFPMAIGSVTFLNMG--QDDTPNPGGFLCFCN--GTFGVKFSFW  87
            C G+  NPI DICW C FP+ IG+   LNM+  +D+ ++P   +C C   +  GV  SFW
Sbjct  40   CQGKMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPNNWFCSCTHPSRSGVTVSFW  99

Query  88   EPIRRVDVTRSPYCFVSLGGISL-----NPGIHAPEGEV---------------REQKDD  127
            EP + V+V R+P+C VSLGGISL     + +  +  ++V               R++++D
Sbjct  100  EPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNEQHD  159

Query  128  TKQSFYQVHWYTDPVMYYTEILLDDPCMETGSFDVAYMTEVDPTWSDDDLTMLLEPETYL  187
              ++FYQVHWY +PV++  E LLD+ CME G++D++ MTE+DPTW    L++   P++ L
Sbjct  160  QHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPDSAL  219

Query  188  FGSPIAQAACAGDCVlsslgfgsnllfWCAGCNGSIYPFNGHVQAHVSAIQASSLLVERM  247
            F++ +AQAACA+DCV ++ GF  N L+WCAGC+G+IYP++G + +H S +QA+ L+  R+
Sbjct  220  FANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMAARI  279

Query  248  TAKLHREGLMWGTTGDGAMCGYYLQPVMDKTQYKYTMLYPVAQTDQINGQCCQPYGRTSA  307
             +K+HR+ + W T+G +A+CGY L+PVMDK +YK +M YPVA + ++ G+CC+P GR++ 
Sbjct  280  QTKMHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYPVA-ARKFRGRCCEPIGRSTL  338

Query  308  LWGAGKMIPYTGEDFAYEIFRKRNCC  333
            ++++GK +PY G++FA+++FRKR+CC
Sbjct  339  VRDSGKAFPYKGNQFAFQLFRKRDCC  364

12) bglu_4p0290 in NC_012725


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  256 bits (955),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 144/326 (45%), Positives = 227/326 (70%), Gaps = 25/326 (7%)

Query  32   CVGRFANPVTDICWECAFPMAIGDVTLFSMG--QDDTSNPGGFLCFCN--GTFGVKFSFW  87
            C G+  NP+ DICW C FP+ IG+   ++M+  +D+ S+P   +C C   +  GV  SFW
Sbjct  40   CQGKMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPNNWFCSCTHPSRSGVTVSFW  99

Query  88   EPVRRVDVTRSPYCFVSLGGISL-----NPGISAPEGDV---------------RLQQDN  127
            EP + V+V R+P+C VSLGGISL     + + ++  +DV               R +Q++
Sbjct  100  EPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNEQHD  159

Query  128  TRQSFYQVHWYTDPVMYYTEILLDDPCMETGSFDVAYLTEVDPTWSDDDLTMLLEPETYL  187
             +++FYQVHWY +PV++  E LLD+ CME G++D++ +TE+DPTW    L++   P++ L
Sbjct  160  QHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPDSAL  219

Query  188  FGSPVAQAACAGDCVlsslgfgsnllfWCAGCNGSIYPFNGHVQAHVSAVQASSLLVERM  247
            F++ VAQAACA+DCV ++ GF  N L+WCAGC+G+IYP++G + +H S VQA+ L+  R+
Sbjct  220  FANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMAARI  279

Query  248  TAKLHREGLMWGTTGDGAMCGYYLQPVMDKTQYKYTMLYPVAQTDEINGQCCQPYGRTSA  307
             +K+HR+ + W T+G +A+CGY L+PVMDK +YK +M YPVA +  + G+CC+P GR++ 
Sbjct  280  QTKMHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYPVA-ARKFRGRCCEPIGRSTL  338

Query  308  LWGAGKMIPYTGEDFAYEIFRKRNCC  333
            ++++GK +PY G++FA+++FRKR+CC
Sbjct  339  VRDSGKAFPYKGNQFAFQLFRKRDCC  364

13) bgla_2p0250 in NC_015377


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  256 bits (958),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 145/346 (42%), Positives = 234/346 (68%), Gaps = 25/346 (7%)

Query  12   FALAVLMGVIGFSAPADAGQCVGRFANPITDICWECAFPMAIGSVTFLS--QGQDDTTNP  69
            F+++     +  ++ ++   C G+  NPI DICW C FP+ IG+   L+  + +D+ ++P
Sbjct  20   FSISHAAEAVPTAPIPNKLTCQGKMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSP  79

Query  70   GGFLCFCN--GTFGVKFSFWEPIRRVDVTRSPYCFVSLGGISL-----NPGIRAPEGEV-  121
               +C C   +  GV  SFWEP + V+V R+P+C VSLGGISL     + +  +  ++V 
Sbjct  80   NNWFCSCTHPSRSGVTVSFWEPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVS  139

Query  122  --------------REQKDDTKQSFYQVHWYTDPVMYYTEILLDDPCMETGSFDVAYMTE  167
                          R++++D  ++FYQVHWY +PV++  E LLD+ CME G++D++ MTE
Sbjct  140  NKIQNLFGGSHKRGRNEQHDQHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTE  199

Query  168  VDPTWSDDDLTALLEPETYLFGSPIAQAACAGDCVlsslgfgsnllfWCAGCNGSIYPFN  227
            +DPTW    L+    P++ LF++ +AQAACA+DCV ++ GF  N L+WCAGC+G+IYP++
Sbjct  200  LDPTWKYPSLAVYQAPDSALFANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLS  259

Query  228  GHVQAHVSAIQASSLLVERMTAKLHREGLMWGTTGDGAMCGYYLQPVMDKTQYKYTMLYP  287
            G + +H S +QA+ L+  R+ +K+HR+ + W T+G +A+CGY L+PVMDK +YK +M YP
Sbjct  260  GWMSGHFSEVQAAKLMAARIQTKMHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYP  319

Query  288  VAQTDKINGQCCQPYGRSSALWGAGKMIPYTGEDFAYEIFRKRNCC  333
            VA + K+ G+CC+P GRS+ ++++GK +PY G++FA+++FRKR+CC
Sbjct  320  VA-ARKFRGRCCEPIGRSTLVRDSGKAFPYKGNQFAFQLFRKRDCC  364

14) bglu_3p0250 in NC_012720


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  255 bits (954),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 144/326 (45%), Positives = 227/326 (70%), Gaps = 25/326 (7%)

Query  32   CVGRFANPVTDICWECAFPMAIGDVTLFSMG--QDDTSNPGGFLCFCN--GTFGVKFSFW  87
            C G+  NP+ DICW C FP+ IG+   ++M+  +D+ S+P   +C C   +  GV  SFW
Sbjct  40   CQGKMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPNNWFCSCTHPSRSGVTVSFW  99

Query  88   EPVRRVDVTRSPYCFVSLGGISL-----NPGISAPEGDV---------------RLQQDN  127
            EP + V+V R+P+C VSLGGISL     + + ++  +DV               R +Q++
Sbjct  100  EPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNEQHD  159

Query  128  TRQSFYQVHWYTDPVMYYTEILLDDPCMETGSFDVAYLTEVDPTWSDDDLTMLLEPETYL  187
             +++FYQVHWY +PV++  E LLD+ CME G++D++ +TE+DPTW    L++   P++ L
Sbjct  160  QHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPDSAL  219

Query  188  FGSPVAQAACAGDCVlsslgfgsnllfWCAGCNGSIYPFNGHVQAHVSAVQASSLLVERM  247
            F++ VAQAACA+DCV ++ GF  N L+WCAGC+G+IYP++G + +H S VQA+ L+  R+
Sbjct  220  FANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMAARI  279

Query  248  TAKLHREGLMWGTTGDGAMCGYYLQPVMDKTQYKYTMLYPVAQTDEINGQCCQPYGRTSA  307
             +K+HR+ + W T+G +A+CGY L+PVMDK +YK +M YPVA +  + G+CC+P GR++ 
Sbjct  280  QTKMHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYPVA-ARKFRGRCCEPIGRSTL  338

Query  308  LWGAGKMIPYTGEDFAYEVFRKRNCC  333
            ++++GK +PY G++FA+++FRKR+CC
Sbjct  339  VRDSGKAFPYKGNQFAFQLFRKRDCC  364

15) Daro_2325 in NC_007298


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  254 bits (950),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 154/338 (46%), Positives = 230/338 (69%), Gaps = 20/338 (5%)

Query  24   PTQAAGTATCTGKFPNPITDICWSCILPISIGSARIANFGDQEDTDNPPNP-VCSCLVNP  82
             +  +   TC GK  NPI DICWSC++PI IG+    N ++QED +++PN   CSC   +
Sbjct  31   TAPIPNKLTCQGKMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPNNWFCSCTHPS  90

Query  83   IVGLSIGFWEPARHVEVVRKPFCLVSLGGVDLDPGIPAPEAA------------------  124
              G++++FWEP++ VEVVR PFC+VSLGG+ L    +    +                  
Sbjct  91   RSGVTVSFWEPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSH  150

Query  125  RFTRPEGDGDGGGFYQAHYYLNPVMYWLEVVTDFPCLEKSSFDLAYMTEVDPLWADDELT  184
            +  R E +++  +FYQ H Y NPV++WLE + D  C+EK+++D++ MTE+DP W    L+
Sbjct  151  KRGRNEQHDQHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLA  210

Query  185  LILNPDAVLFanpvaiaacaadcvaaSVGFGIRELFWCAGCQGGVYPLNGHVPYHLGGVR  244
            +   PD+ LFAN VA AACAADCV A+ GF +  L+WCAGC+G +YPL+G ++ H++ V+
Sbjct  211  VYQAPDSALFANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQ  270

Query  245  TAALMAQRLSAKMHRELVAWGWHGKDGLCGPYFEPVMDKTAYKTQLTYPIPNTDKEGGRC  304
            +A LMA R+ +KMHR+LVAW   G+D+LCG  ++PVMDK  YK  +TYP++ + K  GRC
Sbjct  271  AAKLMAARIQTKMHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYPVA-ARKFRGRC  329

Query  305  CQPFGRTTVLWGAGKEYPVRGEDFAFMLFRKRNCCVGY  342
            C+P+GR+T+++++GK +P +G++FAF LFRKR+CC +Y
Sbjct  330  CEPIGRSTLVRDSGKAFPYKGNQFAFQLFRKRDCCGAY  367

16) Daro_2658 in NC_007298


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  247 bits (921),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 149/326 (46%), Positives = 225/326 (70%), Gaps = 20/326 (6%)

Query  36   KFPNPITDICWSCILPISIGSAHIANFGDQEDTDNPPSP-VCSCLVNPIIGLSIGFWEPA  94
            K  NPI DICWSC++PI IG+    N ++QED +++P+   CSC   +  G++++FWEP+
Sbjct  43   KMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPNNWFCSCTHPSRSGVTVSFWEPT  102

Query  95   RHVEVVRKPFCLVSLGGVDLDPGIPAPEAA------------------RFTRPEGDGDGG  136
            + VEVVR PFC+VSLGG+ L    +    +                  +  R E +++  
Sbjct  103  HLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNEQHDQHN  162

Query  137  GFYQAHYYLNPVMYWLDVVTDFPCLEKASFDLAYMTEVDPLWADDELTLILNPDAVLFan  196
            +FYQ H Y NPV++WL+ + D  C+EK+++D++ MTE+DP W    L++   PD+ LFAN
Sbjct  163  AFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPDSALFAN  222

Query  197  pvaiaacaadcvaaSVGFGIREMFWCAGCQGGIYPLNGHVPYHLGGVRTAALMAQRLSAK  256
             VA AACAADCV A+ GF +  ++WCAGC+G IYPL+G ++ H++ V++A LMA R+ +K
Sbjct  223  VVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMAARIQTK  282

Query  257  MHRELVAWGWHGKDGLCGPYFEPVMDKTAYKTQLTYPIPNTDKDGGRCCQPFGRTTVLWG  316
            MHR+LVAW   G+D+LCG  ++PVMDK  YK  +TYP++ + K  GRCC+P+GR+T++++
Sbjct  283  MHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYPVA-ARKFRGRCCEPIGRSTLVRD  341

Query  317  AGKEYPVRGEDFAFMLFRKRNCCVGY  342
            +GK +P +G++FAF LFRKR+CC +Y
Sbjct  342  SGKAFPYKGNQFAFQLFRKRDCCGAY  367

17) traU in NC_006513


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  244 bits (912),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 145/326 (45%), Positives = 223/326 (69%), Gaps = 20/326 (6%)

Query  35   KFPNPITDICWSCILPISIGAARVANFGDQEDTDNPSSP-VCSCGVNPAIGLSIGFWEPA  93
            K  NPI DICWSC++PI IG+    N ++QED +++++   CSC   +  G++++FWEP+
Sbjct  43   KMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPNNWFCSCTHPSRSGVTVSFWEPT  102

Query  94   RHVEAVRKPFCLVSLGGVDLDPGIPAPEAA------------------RFTRPEGDGDGG  135
            + VE VR PFC+VSLGG+ L    +    +                  +  R E +++  
Sbjct  103  HLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNEQHDQHN  162

Query  136  SFYQAHFYVNPVMYWLEVVTDFPCLEKGSFDLAYLTEVDPLWNDDELTLILNPDAVLFan  195
            +FYQ H Y NPV++WLE + D  C+EKG++D++ +TE+DP W+   L++   PD+ LFAN
Sbjct  163  AFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPDSALFAN  222

Query  196  piaiaacaadcvaaSVGFGLKELFWCAGCQGGIYPLDGHVPYHLGGVRTAALMAQRLTAK  255
             +A AACAADCV A+ GF ++ L+WCAGC+G IYPL G ++ H++ V++A LMA R+ +K
Sbjct  223  VVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMAARIQTK  282

Query  256  MHRELIAWGWHGTPGLCGPYFEPVMDKTAYKTQLTYPIPNTAKEAGRCCQPFGRTTVLWG  315
            MHR+L+AW   G  +LCG  ++PVMDK  YK  +TYP++ + K  GRCC+P+GR+T++++
Sbjct  283  MHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYPVA-ARKFRGRCCEPIGRSTLVRD  341

Query  316  AGKEYPVRGEDFAFMLFRKRNCCVGF  341
            +GK +P +G++FAF LFRKR+CC ++
Sbjct  342  SGKAFPYKGNQFAFQLFRKRDCCGAY  367

18) ABK1_3762 in NC_017163


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  238 bits (889),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 128/294 (44%), Positives = 208/294 (71%), Gaps = 23/294 (7%)

Query  11   QEDNSNPSQLFCSCAIPRIYLGIQTGFWEPVRRVDVTRTPYCMVSLGT------ELDVGV  64
            +++ S+P++ FCSC+ P    G+  +FWEP + V+V RTP+CMVSLG         D + 
Sbjct  73   EDNGSSPNNWFCSCTHPSR-SGVTVSFWEPTHLVEVVRTPFCMVSLGGISLKNQKADTAE  131

Query  65   EAPEGEV---------------RLHDDNNRHSFYQAHWYTDPIMMWLEVIYEHPCTETGY  109
             +  ++V               R ++++++++FYQ HWY +P++ WLE + ++ C E G 
Sbjct  132  TTGKADVSNKIQNLFGGSHKRGRNEQHDQHNAFYQVHWYKNPVVFWLEALLDNDCMEKGT  191

Query  110  FDIGYMTELDPMWNDDELSAILSPEAALFTNPLTQAACAGDCVLASAGFGSNGLFWCAGC  169
            +DIG MTELDP W+   L+   +P++ALF+N ++QAACA+DCV A+AGF  N L+WCAGC
Sbjct  192  LDIGWMTELDPTWKYPSLAVYQAPDSALFANVVAQAACAADCVKAAAGFPFNKLYWCAGC  251

Query  170  NGSIYPLNGNVGAHVSHIQASSLIAQRLAAKMHRQFLTWGTNGEAGLCGVYPQPIMDKTA  229
            +G+IYPL+G +++H S++QA+ L+A R+ +KMHR++++W T+G  +LCG   +P+MDK  
Sbjct  252  HGTIYPLSGWMSGHFSEVQAAKLMAARIQTKMHRDLVAWRTSGRDALCGYKLNPVMDKQN  311

Query  230  YKYQMLYPVAQTKKINGKCCQPFGRTTSVWGAGKSWPVTGEHFSYELFRKKNCC  283
            YK  M YPVA ++K+ G+CC+P+GR+T V+++GK+ P  G++F+++LFRK++CC
Sbjct  312  YKMAMTYPVA-ARKFRGRCCEPIGRSTLVRDSGKAFPYKGNQFAFQLFRKRDCC  364

19) Alide2_3352 in NC_015422


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  233 bits (868),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 141/326 (44%), Positives = 219/326 (68%), Gaps = 20/326 (6%)

Query  35   KFPNPITDICWSCILPLSIGGARIGNFGDQEDIDNPSSP-LCTCGVNPIIGLSIGFWEPA  93
            K  NPI DICWSC++P+ IGG    N ++QED +++++  +C+C   +  G++++FWEP+
Sbjct  43   KMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPNNWFCSCTHPSRSGVTVSFWEPT  102

Query  94   RHVEAVRKPFCLTSLGGIDLDPGIPAPEAA------------------RFTRPEGDGDGG  135
            + VE VR PFC+ SLGGI L    +    +                  +  R E +++  
Sbjct  103  HLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNEQHDQHN  162

Query  136  SFYQAHFYVNPVLYYLEVVTDFPCLEKGSFDLAYLTEVDPLWADDELTLIINPDAALFan  195
            +FYQ H Y NPV++ LE + D  C+EKG++D++ +TE+DP W    L++   PD+ALFAN
Sbjct  163  AFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPDSALFAN  222

Query  196  pvaiaacaadcvaaSVGFGIREMFWCAGCQGGLYPMNGHVPYHMGGVRTAALMAQRLTAK  255
             VA AACAADCV A+ GF +  ++WCAGC+G +YP++G ++ H + V++A LMA R+ +K
Sbjct  223  VVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMAARIQTK  282

Query  256  MHRELIAWAWHGQAGLCGPYFAPVMDKTAYKTQLTHPIPNTAKEAGKCCQPFGRTTVTWG  315
            MHR+L+AW   G+ +LCG  + PVMDK  YK  +T P++ + K  G+CC+P+GR+T+ ++
Sbjct  283  MHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYPVA-ARKFRGRCCEPIGRSTLVRD  341

Query  316  AGKEYPVRGEDFAFLLFRKRNCCVGY  341
            +GK +P +G++FAF LFRKR+CC +Y
Sbjct  342  SGKAFPYKGNQFAFQLFRKRDCCGAY  367

20) DelCs14_1686 in NC_015563


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  233 bits (868),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 142/326 (44%), Positives = 217/326 (67%), Gaps = 20/326 (6%)

Query  33   KFPNPITDICWSCILPLSIGGARVGDFGAQEDIDNPGSP-LCTCGVNPVIGITVGFWEPA  91
            K  NPI DICWSC++P+ IGG    + + QED +++ +  +C+C   +  G+TV+FWEP+
Sbjct  43   KMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPNNWFCSCTHPSRSGVTVSFWEPT  102

Query  92   RHVEAVRKPFCLASLGGIDLDPGIPAPEAA------------------RFTRPEGDGDGS  133
            + VE VR PFC+ SLGGI L    +    +                  +  R E +++ +
Sbjct  103  HLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNEQHDQHN  162

Query  134  SFYQAHFYVNPVLYYLEVVTDFPCLEKGSFDLAYLTEVDPLWADDELTLIINPDAVLFan  193
            +FYQ H Y NPV++ LE + D  C+EKG++D++ +TE+DP W    L++   PD+ LFAN
Sbjct  163  AFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPDSALFAN  222

Query  194  pvaiaacaadcvaaSLGFGIREMFWCAGCQGGLYPMNGHVPYHMGGVRTAALMAQRLTAK  253
             VA AACAADCV A+ GF +  ++WCAGC+G +YP++G ++ H + V++A LMA R+ +K
Sbjct  223  VVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMAARIQTK  282

Query  254  MHRELIAWGWHGQAGLCGPYFMPVMDKAAYKTQLTYPIPNTSKEAGKCCQPFGRQTVTWG  313
            MHR+L+AW   G+ +LCG  + PVMDK  YK  +TYP++ + K  G+CC+P+GR T+ ++
Sbjct  283  MHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYPVA-ARKFRGRCCEPIGRSTLVRD  341

Query  314  AGKEYPVRGEDFAFMLFRKRNCCVGY  339
            +GK +P +G++FAF LFRKR+CC +Y
Sbjct  342  SGKAFPYKGNQFAFQLFRKRDCCGAY  367

21) Ajs_1530 in NC_008782


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  232 bits (866),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 140/326 (43%), Positives = 219/326 (68%), Gaps = 20/326 (6%)

Query  35   KFPNPITDICWSCILPLSIGSARIGNFGDQEDIDNPSSP-LCTCGVNPTIGLSIGFWEPA  93
            K  NPI DICWSC++P+ IG+    N ++QED +++++  +C+C   +  G++++FWEP+
Sbjct  43   KMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPNNWFCSCTHPSRSGVTVSFWEPT  102

Query  94   RHVEAVRKPFCLTSLGGIDLDPGIPAPEAA------------------RFTRPEGDGNGG  135
            + VE VR PFC+ SLGGI L    +    +                  +  R E +++  
Sbjct  103  HLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNEQHDQHN  162

Query  136  SFYQAHFYVNPVLYYLEVVTDFPCLEKGSFDLAYLTEVDPLWADDELTLIINPDAALFan  195
            +FYQ H Y NPV++ LE + D  C+EKG++D++ +TE+DP W    L++   PD+ALFAN
Sbjct  163  AFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPDSALFAN  222

Query  196  pvaiaacaadcvaaSVGFGIREMFWCAGCQGGLYPMNGHVPYHMGGVRTAALMAQRLTAK  255
             VA AACAADCV A+ GF +  ++WCAGC+G +YP++G ++ H + V++A LMA R+ +K
Sbjct  223  VVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMAARIQTK  282

Query  256  MHRELIAWAWHGQAGLCGPYFAPVMDKTAYKTQLTHPIPNTAKEAGKCCQPFGRTTVTWG  315
            MHR+L+AW   G+ +LCG  + PVMDK  YK  +T P++ + K  G+CC+P+GR+T+ ++
Sbjct  283  MHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYPVA-ARKFRGRCCEPIGRSTLVRD  341

Query  316  AGKEYPVRGEDFAFLLFRKRNCCVGY  341
            +GK +P +G++FAF LFRKR+CC +Y
Sbjct  342  SGKAFPYKGNQFAFQLFRKRDCCGAY  367

22) Alide2_2813 in NC_015422


> AY803022|17|G17|58891385|AAW83073.1|Neisseria_gonorrhoeae_MS11|+|16415..17533|traU|-|TraU
Length=372

 Score =  231 bits (860),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 142/330 (44%), Positives = 218/330 (67%), Gaps = 20/330 (6%)

Query  29   TCTGKFPNPITDICWSCILPLSIGSARIGDFGSQEDIENPGSP-LCTCGVNPVIGLSVGF  87
            TC GK  NPI DICWSC++P+ IG+    + ++QED  ++ +  +C+C   +  G++V+F
Sbjct  39   TCQGKMLNPINDICWSCMFPIKIGGKINLNMDNQEDNGSSPNNWFCSCTHPSRSGVTVSF  98

Query  88   WEPARHVEAVRKPFCLTSLGGIDLNPGIPAPEAA------------------RFTRSEGD  129
            WEP++ VE VR PFC+ SLGGI L+   +    +                  +  R+E +
Sbjct  99   WEPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNEQH  158

Query  130  GDGGSFYQAHFYVNPVLYYLEVVTDFPCLEKGSFDLAYLTEVDPLWADDELTLIINPDAV  189
            ++  +FYQ H Y NPV++ LE + D  C+EKG++D++ +TE+DP W    L++   PD+ 
Sbjct  159  DQHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPDSA  218

Query  190  LFanpvaiaacaadcvaaSLGFGIREMFWCAGCQGGLYPMNGHVPYHLGGVRTAALMAQR  249
            LFAN VA AACAADCV A+ GF +  ++WCAGC+G +YP++G ++ H++ V++A LMA R
Sbjct  219  LFANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMAAR  278

Query  250  LTAKMHRELIAWGWHGTPGLCGPYFLPVMDKAAYKTQLTHPIPATSKETGKCCRPFGRQT  309
            + +KMHR+L+AW   G  +LCG  + PVMDK  YK  +T P+ A+ K  G+CC P+GR T
Sbjct  279  IQTKMHRDLVAWRTSGRDALCGYKLNPVMDKQNYKMAMTYPV-AARKFRGRCCEPIGRST  337

Query  310  VTWSAGKEYPVRGEDFSFILFRKRNCCVGY  339
            + + +GK +P +G++F+F LFRKR+CC +Y
Sbjct  338  LVRDSGKAFPYKGNQFAFQLFRKRDCCGAY  367