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Homologs of SF2979 gene of NC_004337_P1

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) p1ECUMN_0017
( - )

NC_011749
(Escherichia coli UMN026)

e-177

97.6

2) EC042_pAA006
( - )

NC_017627
(Escherichia coli 042)

e-168

95.1

3) EC042_4578
( - )

NC_017626
(Escherichia coli 042)

e-164

94.4

4) EC042_pAA156
( - )

NC_017627
(Escherichia coli 042)

e-162

95.5

5) ECO103_4899
( - )

NC_013353
(Escherichia coli 12009)

e-147

94.8

6) unnamed
( - )

NC_013353
(Escherichia coli 12009)

e-147

94.8

7) unnamed
( - )

NC_013353
(Escherichia coli 12009)

e-147

94.8

8) ECO103_3579
( - )

NC_013353
(Escherichia coli 12009)

e-147

94.8

9) unnamed
( - )

NC_007608
(Shigella boydii Sb227)

e-135

98.8

10) ECO26_p1-48
( - )

NC_013369
(Escherichia coli 11368)

e-119

95.4

11) ECO111_0804
( - )

NC_013364
(Escherichia coli 11128)

e-119

95.4

• Sequence Alignments

1) p1ECUMN_0017 in NC_011749


>NC_004337_P1|16|G12|24114243|NP_708753.1|Shigella_flexneri_2a_str._301|-|22711..23037|-|SF2979|IS629 
          Length = 327

 Score = 618 bits (1595), Expect = e-177
 Identities = 319/327 (98%)
 Strand = Plus / Plus

Query: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60

Query: 61  gaaagtcagggcgaatatgactcacaatgggcgacaatttgttccattgccccaaagatt 120
           ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 61  gaaagtcagagcgaatatgactcacaatgggcgacaatttgttctattgctccaaagatt 120

Query: 121 ggctgtacaccggagactctgcgtgtctgggtacgccagcatgagcgggataccggaggc 180
           |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 180

Query: 181 ggtgatggcgggctcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240

Query: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttattttgcgaaggcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttattttgcgaaggcg 300

Query: 301 gagttcgaccgcctctggaaaaagtga 327
           ||||||||||||||||||||||| |||
Sbjct: 301 gagttcgaccgcctctggaaaaaatga 327

2) EC042_pAA006 in NC_017627


>NC_004337_P1|16|G12|24114243|NP_708753.1|Shigella_flexneri_2a_str._301|-|22711..23037|-|SF2979|IS629 
          Length = 327

 Score = 587 bits (1514), Expect = e-168
 Identities = 310/327 (95%)
 Strand = Plus / Plus

Query: 1   atgactaaaaatactcgtttt-cccccgaagtccgtcagagggcgattcgtatggttctg 59
           ||||||||||||||||||||| ||||||||||||||||  ||||  | ||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60

Query: 60  gaaagtcagggcgaatatgactcacaatgggcggtaatttgttccattgccccaaagatt 119
           ||||||||| |||||||||||||||||||||||  ||||||||| ||||| |||||||||
Sbjct: 61  gaaagtcagagcgaatatgactcacaatgggcgacaatttgttctattgctccaaagatt 120

Query: 120 ggctgtacaccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 179
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 180

Query: 180 ggtgatggcgggctcaccactgctgaacgtcagcgtctgaaagagctggagcgtgaaaat 239
           |||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240

Query: 240 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttattttgcgaaggcg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttattttgcgaaggcg 300

Query: 300 aggttcgaccgcctctggaaaaaatga 326
             |||||||||||||||||||||||||
Sbjct: 301 gagttcgaccgcctctggaaaaaatga 327

3) EC042_4578 in NC_017626


>NC_004337_P1|16|G12|24114243|NP_708753.1|Shigella_flexneri_2a_str._301|-|22711..23037|-|SF2979|IS629 
          Length = 327

 Score = 574 bits (1480), Expect = e-164
 Identities = 305/324 (94%)
 Strand = Plus / Plus

Query: 1   atgactaaaaatactcgtttttcccccgaagttcgtcatagggtgatacgtatagttctg 60
           |||||||||||||||||||||||||||||||| |||||  |||   | ||||| ||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60

Query: 61  gaaagtcag-gcgaatatgactcacaatgggcggtagtttgttccattgccccaaagatt 119
           ||||||||| |||||||||||||||||||||||  | ||||||| ||||| |||||||||
Sbjct: 61  gaaagtcagagcgaatatgactcacaatgggcgacaatttgttctattgctccaaagatt 120

Query: 120 ggctgtacgccagagaccctgcgtgtctgggttcgccagcatgagcgggataccaggggc 179
           ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 180

Query: 180 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggagcgtgaaaat 239
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240

Query: 240 cgtgaactgcgccgcagtagcgatatccttcgccaggcttccgcttattttgcgaaggcg 299
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttattttgcgaaggcg 300

Query: 300 gagttcgaccgcctctggaaaaaa 323
           ||||||||||||||||||||||||
Sbjct: 301 gagttcgaccgcctctggaaaaaa 324

4) EC042_pAA156 in NC_017627


>NC_004337_P1|16|G12|24114243|NP_708753.1|Shigella_flexneri_2a_str._301|-|22711..23037|-|SF2979|IS629 
          Length = 327

 Score = 568 bits (1465), Expect = e-162
 Identities = 295/309 (95%)
 Strand = Plus / Plus

Query: 1   ttttcccccgaagtccgtcagcgggcgattcgtatggttctggaaagtcaggatgaatat 60
           |||||||||||||||||||| |||||  | |||||||||||||||||||||   ||||||
Sbjct: 19  ttttcccccgaagtccgtcaacgggcagtccgtatggttctggaaagtcagagcgaatat 78

Query: 61  gactcacagtgggcggcaatttgttccattgccccaaagattggctgtacgccggagact 120
           |||||||| |||||| |||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 79  gactcacaatgggcgacaatttgttctattgctccaaagattggctgtacgccggagact 138

Query: 121 ctgcgtgtctgggttcgccagcatgagcgggataccgggggcggtgatggtgggctcacc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 139 ctgcgtgtctgggttcgccagcatgagcgggataccgggggcggtgatggagggctcacc 198

Query: 181 agcgctgaacgtcagcgtctgaaagagctggaacgtgaaaatcgtgaactgcgccgcagt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 accgctgaacgtcagcgtctgaaagagctggaacgtgaaaatcgtgaactgcgccgcagt 258

Query: 241 aacgatattcttcgccaggcttccgcttattttgcgaaggcggagttcgaccgcctctgg 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aacgatatccttcgccaggcttccgcttattttgcgaaggcggagttcgaccgcctctgg 318

Query: 301 aaaaaatga 309
           |||||||||
Sbjct: 319 aaaaaatga 327

5) unnamed in NC_013353


>NC_004337_P1|16|G12|24114243|NP_708753.1|Shigella_flexneri_2a_str._301|-|22711..23037|-|SF2979|IS629 
          Length = 327

 Score = 519 bits (1340), Expect = e-147
 Identities = 273/288 (95%)
 Strand = Plus / Plus

Query: 55  atgactaaaaatacacgtttttcccccgaagtccgtcaacgggcagttcgtatggttctg 114
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60

Query: 115 gaaagtcagggcgaatatgactcacaatgggcggcaatttgttccattaccccaaagatt 174
           ||||||||| ||||||||||||||||||||||| |||||||||| ||| | |||||||||
Sbjct: 61  gaaagtcagagcgaatatgactcacaatgggcgacaatttgttctattgctccaaagatt 120

Query: 175 ggctgtacgccggagactctgcgtgtctgggtacgccagcatgagcgggataccggaggc 234
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 180

Query: 235 ggtgatggtgggctcaccaccactgaacgtcagcctctgaaagagctggagcgtaaaaat 294
           |||||||| |||||||||||| |||||||||||| ||||||||||||||| ||| |||||
Sbjct: 181 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240

Query: 295 cgtgaactgcgccgcagtaacgatatccttcgccagacttccgcttat 342
           |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttat 288

6) ECO103_3579 in NC_013353


>NC_004337_P1|16|G12|24114243|NP_708753.1|Shigella_flexneri_2a_str._301|-|22711..23037|-|SF2979|IS629 
          Length = 327

 Score = 519 bits (1340), Expect = e-147
 Identities = 273/288 (95%)
 Strand = Plus / Plus

Query: 1   atgactaaaaatacacgtttttcccccgaagtccgtcaacgggcagttcgtatggttctg 60
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60

Query: 61  gaaagtcagggcgaatatgactcacaatgggcggcaatttgttccattaccccaaagatt 120
           ||||||||| ||||||||||||||||||||||| |||||||||| ||| | |||||||||
Sbjct: 61  gaaagtcagagcgaatatgactcacaatgggcgacaatttgttctattgctccaaagatt 120

Query: 121 ggctgtacgccggagactctgcgtgtctgggtacgccagcatgagcgggataccggaggc 180
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 180

Query: 181 ggtgatggtgggctcaccaccactgaacgtcagcctctgaaagagctggagcgtaaaaat 240
           |||||||| |||||||||||| |||||||||||| ||||||||||||||| ||| |||||
Sbjct: 181 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240

Query: 241 cgtgaactgcgccgcagtaacgatatccttcgccagacttccgcttat 288
           |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttat 288

7) ECO103_4899 in NC_013353


>NC_004337_P1|16|G12|24114243|NP_708753.1|Shigella_flexneri_2a_str._301|-|22711..23037|-|SF2979|IS629 
          Length = 327

 Score = 519 bits (1340), Expect = e-147
 Identities = 273/288 (95%)
 Strand = Plus / Plus

Query: 1   atgactaaaaatacacgtttttcccccgaagtccgtcaacgggcagttcgtatggttctg 60
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60

Query: 61  gaaagtcagggcgaatatgactcacaatgggcggcaatttgttccattaccccaaagatt 120
           ||||||||| ||||||||||||||||||||||| |||||||||| ||| | |||||||||
Sbjct: 61  gaaagtcagagcgaatatgactcacaatgggcgacaatttgttctattgctccaaagatt 120

Query: 121 ggctgtacgccggagactctgcgtgtctgggtacgccagcatgagcgggataccggaggc 180
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 180

Query: 181 ggtgatggtgggctcaccaccactgaacgtcagcctctgaaagagctggagcgtaaaaat 240
           |||||||| |||||||||||| |||||||||||| ||||||||||||||| ||| |||||
Sbjct: 181 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240

Query: 241 cgtgaactgcgccgcagtaacgatatccttcgccagacttccgcttat 288
           |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttat 288

8) unnamed in NC_013353


>NC_004337_P1|16|G12|24114243|NP_708753.1|Shigella_flexneri_2a_str._301|-|22711..23037|-|SF2979|IS629 
          Length = 327

 Score = 519 bits (1340), Expect = e-147
 Identities = 273/288 (95%)
 Strand = Plus / Plus

Query: 55  atgactaaaaatacacgtttttcccccgaagtccgtcaacgggcagttcgtatggttctg 114
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60

Query: 115 gaaagtcagggcgaatatgactcacaatgggcggcaatttgttccattaccccaaagatt 174
           ||||||||| ||||||||||||||||||||||| |||||||||| ||| | |||||||||
Sbjct: 61  gaaagtcagagcgaatatgactcacaatgggcgacaatttgttctattgctccaaagatt 120

Query: 175 ggctgtacgccggagactctgcgtgtctgggtacgccagcatgagcgggataccggaggc 234
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 180

Query: 235 ggtgatggtgggctcaccaccactgaacgtcagcctctgaaagagctggagcgtaaaaat 294
           |||||||| |||||||||||| |||||||||||| ||||||||||||||| ||| |||||
Sbjct: 181 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240

Query: 295 cgtgaactgcgccgcagtaacgatatccttcgccagacttccgcttat 342
           |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttat 288

9) unnamed in NC_007608


>NC_004337_P1|16|G12|24114243|NP_708753.1|Shigella_flexneri_2a_str._301|-|22711..23037|-|SF2979|IS629 
          Length = 327

 Score = 477 bits (1232), Expect = e-135
 Identities = 244/247 (99%)
 Strand = Plus / Plus

Query: 55  atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60

Query: 115 gaaagtcagggcgaatatgactcacaatgggcgacaatttgttccattgctccaaagatt 174
           ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 61  gaaagtcagagcgaatatgactcacaatgggcgacaatttgttctattgctccaaagatt 120

Query: 175 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 180

Query: 235 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggagcgtgaaaat 294
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240

Query: 295 cgtgaac 301
           |||||||
Sbjct: 241 cgtgaac 247

10) ECO26_p1-48 in NC_013369


>NC_004337_P1|16|G12|24114243|NP_708753.1|Shigella_flexneri_2a_str._301|-|22711..23037|-|SF2979|IS629 
          Length = 327

 Score = 426 bits (1099), Expect = e-119
 Identities = 229/241 (95%)
 Strand = Plus / Plus

Query: 1   atgggcggcaatttgttccattgc-ccaaagattggctgtacaccggagactctgcgtgt 59
           ||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 87  atgggcgacaatttgttctattgctccaaagattggctgtacgccggagactctgcgtgt 146

Query: 60  ctggggacgccagcatgagcgggataccgggagcggtgatggtgggctcaccagcgctga 119
           |||||  |||||||||||||||||||||||| |||||||||| |||||||||| ||||||
Sbjct: 147 ctgggttcgccagcatgagcgggataccgggggcggtgatggagggctcaccaccgctga 206

Query: 120 acgtcagcgtctgaaagagctggaacgtgaaaaccgtgaactgcgccgcagtaacgatat 179
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 207 acgtcagcgtctgaaagagctggaacgtgaaaatcgtgaactgcgccgcagtaacgatat 266

Query: 180 ccttcgccaggcttccgcttattttgcgaaggccgagttcgaccgcctctggaaaaaata 239
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct: 267 ccttcgccaggcttccgcttattttgcgaaggcggagttcgaccgcctctggaaaaaatg 326

Query: 240 a 240
           |
Sbjct: 327 a 327

11) ECO111_0804 in NC_013364


>NC_004337_P1|16|G12|24114243|NP_708753.1|Shigella_flexneri_2a_str._301|-|22711..23037|-|SF2979|IS629 
          Length = 327

 Score = 424 bits (1095), Expect = e-119
 Identities = 229/241 (95%)
 Strand = Plus / Plus

Query: 1   atgggcggcaatttgttccattgc-ccaaagattggctgtacaccggagactctgcgtgt 59
           ||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 87  atgggcgacaatttgttctattgctccaaagattggctgtacgccggagactctgcgtgt 146

Query: 60  ctggggacgcctgcatgagagggataccgggagcggtgatggtgggctcaccagcgctga 119
           |||||  |||| ||||||| ||||||||||| |||||||||| |||||||||| ||||||
Sbjct: 147 ctgggttcgccagcatgagcgggataccgggggcggtgatggagggctcaccaccgctga 206

Query: 120 acgtcagcgtctgaaagagctggaacgtgaaaaccgtgaactgcgccgcagtaacgatat 179
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 207 acgtcagcgtctgaaagagctggaacgtgaaaatcgtgaactgcgccgcagtaacgatat 266

Query: 180 ccttcgccaggcttccgcttattttgcgaaggcggagttcgaccgcctctggaaaaaatg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ccttcgccaggcttccgcttattttgcgaaggcggagttcgaccgcctctggaaaaaatg 326

Query: 240 a 240
           |
Sbjct: 327 a 327