Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of hrcR gene of AY597283

699

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Marme_1071
( YP_004312182.1 )

Yop virulence translocation R

NC_015276
(Marinomonas mediterranea MMB-1)

2e-71

2) hrcR
( YP_001906463.1 )

type III secretion system protein

NC_010694
(Erwinia tasmaniensis Et1/99)

6e-70

3) hrcR
( YP_003539968.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

1e-69

4) hcrR
( YP_003529886.1 )

Harpin secretion protein HrcR

NC_013961
(Erwinia amylovora CFBP1430)

1e-69

5) hcrR
( YP_005804091.1 )

Harpin secretion protein HrcR

NC_017390
(Erwinia pyrifoliae DSM 12163)

9e-70

6) hrcR
( YP_002650074.1 )

type III secretion system protein

NC_012214
(Erwinia pyrifoliae Ep1/96)

9e-70

7) hrcR
( YP_005818255.1 )

type III secretion system protein

NC_017445
(Erwinia sp. Ejp617)

9e-70

8) D781_3938
( YP_007346313.1 )

type III secretion apparatus protein, YscR/HrcR family

NC_020064
(Serratia marcescens FGI94)

2e-66

9) hrcR
( NP_791222.3 )

type III secretion protein HrcR

NC_004578
(Pseudomonas syringae DC3000)

2e-66

10) PSEBR_a5382
( YP_004356892.1 )

type III secretion protein

NC_015379
(Pseudomonas brassicacearum NFM421)

2e-66

11) hrcR
( YP_005210969.1 )

protein HrcR

NC_016830
(Pseudomonas fluorescens F113)

5e-66

12) rscR
( YP_002870380.1 )

type III secretion system protein

NC_012660
(Pseudomonas fluorescens SBW25)

2e-64

13) Pmen_0046
( YP_001185552.1 )

type III secretion system protein

NC_009439
(Pseudomonas mendocina ymp)

9e-64

14) HrcR
( YP_234300.1 )

type III secretion system protein

NC_007005
(Pseudomonas syringae B728a)

2e-63

15) hrcR
( YP_273544.2 )

type III secretion system protein

NC_005773
(Pseudomonas syringae 1448A)

2e-63

16) H045_00190
( YP_007395610.1 )

type III secretion system protein YscR

NC_020209
(Pseudomonas poae RE*1-1-14)

3e-62

17) PC1_2212
( YP_003017787.1 )

Yop virulence translocation R

NC_012917
(Pectobacterium carotovorum PC1)

2e-61

18) PCC21_022910
( YP_006646947.1 )

type III secretion system protein

NC_018525
(Pectobacterium carotovorum PCC21)

2e-61

19) hrcR
( YP_050174.1 )

type III secretion system protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

4e-61

20) hrcR
( YP_003883246.1 )

type III secretion inner membrane protein

NC_014500
(Dickeya dadantii 3937)

2e-60

21) Dd1591_1885
( YP_003004214.1 )

type III secretion system protein

NC_012912
(Dickeya zeae Ech1591)

2e-60

22) Dd586_1882
( YP_003333446.1 )

Yop virulence translocation R

NC_013592
(Dickeya dadantii Ech586)

2e-59

23) Ser39006_2919
( YP_008523301.1 )

Yop virulence translocation R

NC_022268
(Serratia sp. ATCC 39006)

3e-59

24) rscR
( YP_006322231.1 )

type III secretion protein RscR

NC_017911
(Pseudomonas fluorescens A506)

4e-57

25) H650_14845
( YP_008108769.1 )

hypothetical protein

NC_021500
(Enterobacter sp. R4-368)

6e-57

26) hrcR
( YP_003774221.1 )

type III secretion HrcR transmembrane protein

NC_014323
(Herbaspirillum seropedicae SmR1)

7e-46

27) bscR
( YP_006899833.1 )

type III secretion protein

NC_018829
(Bordetella bronchiseptica MO149)

2e-44

28) bscR
( YP_006625537.1 )

type III secretion protein

NC_018518
(Bordetella pertussis 18323)

2e-44

29) bscR
( YP_005590274.1 )

type III secretion system protein

NC_017223
(Bordetella pertussis CS)

2e-44

30) bscR
( NP_880884.1 )

type III secretion system protein

NC_002929
(Bordetella pertussis Tohama I)

2e-44

31) bscR
( YP_006967888.1 )

type III secretion protein

NC_019382
(Bordetella bronchiseptica 253)

6e-44

32) bscR
( NP_888177.1 )

type III secretion system protein

NC_002927
(Bordetella bronchiseptica RB50)

6e-44

33) bscR
( NP_884486.1 )

type III secretion system protein

NC_002928
(Bordetella parapertussis 12822)

6e-44

34) bscR
( YP_006895376.1 )

type III secretion protein

NC_018828
(Bordetella parapertussis Bpp5)

6e-44

35) NH44784_014541
( YP_008028549.1 )

Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

2e-43

36) rhcR
( YP_002824496.1 )

type III secretion system protein

NC_012586
(Sinorhizobium fredii NGR234)

3e-42

37) SFHH103_04957
( YP_005191562.1 )

RhcR-like, type III secretion system

NC_016815
(Sinorhizobium fredii HH103)

4e-42

38) USDA257_c21640
( YP_006397503.1 )

translocation protein y4yL

NC_018000
(Sinorhizobium fredii USDA 257)

7e-42

39) C770_GR4pC1264
( YP_007193547.1 )

type III secretion apparatus protein, YscR/HrcR family

NC_019848
(Sinorhizobium meliloti GR4)

2e-41

40) yscR
( YP_004677245.1 )

Yop proteins translocation protein R

NC_015717
(Hyphomicrobium sp. MC1)

4e-41

41) HCH_03263
( YP_434447.1 )

type III secretion system protein

NC_007645
(Hahella chejuensis KCTC 2396)

5e-41

42) rhcR
( NP_768459.1 )

type III secretion system protein

NC_004463
(Bradyrhizobium japonicum USDA 110)

1e-40

43) rhcR
( YP_005612838.1 )

RhcR protein

NC_017249
(Bradyrhizobium japonicum USDA 6)

1e-40

44) DvMF_2439
( YP_002436848.1 )

type III secretion system protein

NC_011769
(Desulfovibrio vulgaris Miyazaki F)

2e-40

45) S58_72190
( YP_007516770.1 )

type III secretion system protein YscR

NC_020453
(Bradyrhizobium oligotrophicum S58)

3e-40

46) sctR
( YP_007365636.1 )

type III secretion system protein

NC_020127
(Lawsonia intracellularis N343)

1e-39

47) SctR
( YP_594912.1 )

type III secretion system protein

NC_008011
(Lawsonia intracellularis PHE/MN1-00)

1e-39

48) hrcR
( YP_001984354.1 )

type III secretion system protein

NC_010996
(Rhizobium etli CIAT 652)

1e-39

49) RHE_PD00059
( NP_659978.1 )

type III secretion system protein

NC_004041
(Rhizobium etli CFN 42)

2e-39

50) ETAC_04225
( YP_007628336.1 )

type III secretion system protein YscR

NC_020796
(Edwardsiella tarda C07-087)

3e-39

51) esaR
( YP_003294936.1 )

type three secretion apparatus protein R

NC_013508
(Edwardsiella tarda EIB202)

3e-39

52) esaR
( YP_005698435.1 )

protein EsaR

NC_017309
(Edwardsiella tarda FL6-60)

3e-39

53) Aave_0449
( YP_968830.1 )

type III secretion system protein

NC_008752
(Acidovorax citrulli AAC00-1)

4e-39

54) Acav_0515
( YP_004233005.1 )

Yop virulence translocation R

NC_015138
(Acidovorax avenae ATCC 19860)

5e-39

55) Y11_35451
( YP_006007044.1 )

type III secretion inner membrane protein

NC_017564
(Yersinia enterocolitica Y11)

1e-38

56) escR
( NP_902277.1 )

type III secretion system protein

NC_005085
(Chromobacterium violaceum ATCC 12472)

1e-38

57) Sbal175_2391
( YP_006020948.1 )

Yop virulence translocation R

NC_017571
(Shewanella baltica BA175)

9e-39

58) Sbal117_2090
( YP_006037321.1 )

Yop virulence translocation R

NC_017579
(Shewanella baltica OS117)

9e-39

59) Sbal_1974
( YP_001050347.1 )

type III secretion system protein

NC_009052
(Shewanella baltica OS155)

9e-39

60) Sbal195_2278
( YP_001554706.1 )

type III secretion system protein

NC_009997
(Shewanella baltica OS195)

9e-39

61) Sbal678_2288
( YP_005273495.1 )

Yop virulence translocation R

NC_016901
(Shewanella baltica OS678)

9e-39

62) yscR
( YP_436217.1 )

type III secretion system protein

NC_007645
(Hahella chejuensis KCTC 2396)

2e-38

63) Dvul_2984
( YP_961183.1 )

type III secretion system protein

NC_008741
(Desulfovibrio vulgaris DP4)

2e-38

64) DVUA0122
( YP_009162.1 )

type III secretion system protein

NC_005863
(Desulfovibrio vulgaris Hildenborough)

2e-38

65) Deval_3224
( YP_005704003.1 )

Yop virulence translocation R

NC_017311
(Desulfovibrio vulgaris RCH1)

2e-38

66) YE105_C0338
( YP_004296539.1 )

type III secretion apparatus protein, YscR/HrcR family

NC_015224
(Yersinia enterocolitica 105.5R(r))

4e-38

67) yscR
( YP_005082209.1 )

Yop proteins translocation protein R

NC_016642
(Pseudovibrio sp. FO-BEG1)

4e-38

68) SVI_2230
( YP_003556979.1 )

type III secretion system EscR protein

NC_014012
(Shewanella violacea DSS12)

5e-38

69) mlr8766
( NP_106869.1 )

type III secretion system protein

NC_002678
(Mesorhizobium loti MAFF303099)

6e-38

70) Varpa_4985
( YP_004157256.1 )

yop virulence translocation r

NC_014931
(Variovorax paradoxus EPS)

1e-37

71) REMIM1_PE00285
( YP_008368039.1 )

type III secretion system FliP/YscR family protein

NC_021909
(Rhizobium etli Mim1)

1e-37

72) C770_GR4pB210
( YP_007192280.1 )

Type III secretory pathway, component EscR

NC_019847
(Sinorhizobium meliloti GR4)

3e-37

73) epaP
( YP_001608228.1 )

type III secretion system protein

NC_010159
(Yersinia pestis Angola)

6e-37

74) YPO0270
( YP_002345352.1 )

type III secretion system protein

NC_003143
(Yersinia pestis CO92)

6e-37

75) YPD4_0235
( YP_005503447.1 )

putative type III secretion apparatus protein

NC_017154
(Yersinia pestis D106004)

6e-37

76) YPD8_0240
( YP_005507323.1 )

putative type III secretion apparatus protein

NC_017160
(Yersinia pestis D182038)

6e-37

77) YPZ3_0233
( YP_003566405.1 )

putative type III secretion apparatus protein

NC_014029
(Yersinia pestis Z176003)

6e-37

78) epaP
( YP_001402768.1 )

type III secretion system protein

NC_009708
(Yersinia pseudotuberculosis IP 31758)

6e-37

79) fliP1
( NP_991819.2 )

type III secretion system protein

NC_005810
(Yersinia pestis 91001)

7e-37

80) A1122_03785
( YP_005520452.1 )

type III secretion system protein YscR

NC_017168
(Yersinia pestis A1122)

7e-37

81) YPA_4012
( YP_653918.1 )

type III secretion system protein

NC_008150
(Yersinia pestis Antiqua)

7e-37

82) y0530
( NP_667867.1 )

type III secretion system protein

NC_004088
(Yersinia pestis KIM)

7e-37

83) YPN_3397
( YP_649324.1 )

type III secretion system protein

NC_008149
(Yersinia pestis Nepal516)

7e-37

84) YPDSF_3700
( YP_001165023.1 )

type III secretion system protein

NC_009381
(Yersinia pestis Pestoides F)

7e-37

85) YPTB0327
( YP_068873.2 )

type III secretion system protein

NC_006155
(Yersinia pseudotuberculosis IP 32953)

7e-37

86) YPTS_0351
( YP_001870797.1 )

type III secretion system protein

NC_010634
(Yersinia pseudotuberculosis PB1/+)

7e-37

87) YPK_3902
( YP_001722620.1 )

type III secretion system protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

7e-37

88) ECs4583
( NP_312610.1 )

type III secretion system protein

NC_002695
(Escherichia coli Sakai)

2e-36

89) PADK2_17235
( YP_006483428.1 )

type III secretion system protein YscR

NC_018080
(Pseudomonas aeruginosa DK2)

3e-36

90) escR
( YP_003236103.1 )

T3SS structure protein EscR

NC_013364
(Escherichia coli 11128)

3e-36

91) escR
( YP_003501889.1 )

type III secretion system EscR protein

NC_013941
(Escherichia coli CB9615)

3e-36

92) escR
( YP_002331425.1 )

type III secretion system protein

NC_011601
(Escherichia coli E2348/69)

3e-36

93) epaP
( YP_002273179.1 )

type III secretion system protein

NC_011353
(Escherichia coli EC4115)

3e-36

94) escR
( NP_290283.1 )

type III secretion system protein

NC_002655
(Escherichia coli EDL933)

3e-36

95) ECO55CA74_21290
( YP_006161363.1 )

type III secretion system protein YscR

NC_017656
(Escherichia coli RM12579)

3e-36

96) escR
( YP_003080495.1 )

type III secretion system protein

NC_013008
(Escherichia coli TW14359)

3e-36

97) CDCO157_4318
( YP_006315183.1 )

type III secretion system protein

NC_017906
(Escherichia coli Xuzhou21)

3e-36

98) escR
( YP_003232138.1 )

type III secretion system protein

NC_013361
(Escherichia coli 11368)

3e-36

99) escR
( YP_003223490.1 )

T3SS structure protein EscR

NC_013353
(Escherichia coli 12009)

3e-36

100) sctR
( NP_930977.1 )

type III secretion system protein

NC_005126
(Photorhabdus luminescens TTO1)

4e-36

101) pscR
( YP_005975938.1 )

type III secretion system protein

NC_017548
(Pseudomonas aeruginosa M18)

5e-36

102) pscR
( YP_005980835.1 )

type III secretion system protein

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

5e-36

103) pscR
( NP_250384.1 )

type III secretion system protein

NC_002516
(Pseudomonas aeruginosa PAO1)

5e-36

104) ssaR
( YP_008132244.1 )

flagellar biosynthesis protein FliP

NC_021577
(Pseudomonas aeruginosa RP73)

5e-36

105) pscR
( YP_791552.1 )

type III secretion system protein

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

5e-36

106) G655_16715
( YP_007710183.1 )

type III secretion system protein YscR

NC_020912
(Pseudomonas aeruginosa B136-33)

6e-36

107) escR
( YP_003366517.1 )

T3SS structural protein EscR

NC_013716
(Citrobacter rodentium ICC168)

7e-36

108) pscR
( YP_002441218.1 )

type III secretion system protein

NC_011770
(Pseudomonas aeruginosa LESB58)

1e-35

109) ssaR
( YP_002226666.1 )

type III secretion system protein

NC_011274
(Salmonella enterica 287/91)

1e-35

110) SBOV14161
( YP_008505286.1 )

type III secretion apparatus protein, YscR/HrcR family

NC_022241
(Salmonella enterica 3114)

1e-35

111) ssaR
( YP_008480906.1 )

putative type III secretion protein

NC_022221
(Salmonella enterica CDC1983-67)

1e-35

112) ssaR
( YP_008308803.1 )

flagellar biosynthesis protein FliP

NC_021844
(Salmonella enterica CFSAN000189)

1e-35

113) yscR
( NP_456109.1 )

putative type III secretion protein

NC_003198
(Salmonella enterica CT18)

1e-35

114) STBHUCCB_13770
( YP_005216935.1 )

hypothetical protein

NC_016832
(Salmonella enterica P-stx-12)

1e-35

115) ssaR
( YP_002243726.1 )

type III secretion system protein

NC_011294
(Salmonella enterica P125109)

1e-35

116) ssaR
( YP_005212444.1 )

putative type III secretion protein

NC_016831
(Salmonella enterica RKS5078)

1e-35

117) ssaR
( YP_008380650.1 )

flagellar biosynthesis protein FliP

NC_021984
(Salmonella enterica S06004)

1e-35

118) epaP
( YP_002040671.1 )

type III secretion system protein

NC_011080
(Salmonella enterica SL254)

1e-35

119) yscR
( NP_805090.1 )

type III secretion system protein

NC_004631
(Salmonella enterica Ty2)

1e-35

120) TY21A_06540
( YP_007925612.1 )

type III secretion system protein

NC_021176
(Salmonella enterica Ty21a)

1e-35

121) SN31241_24890
( YP_008360405.1 )

Virulence protein yscR

NC_021902
(Salmonella enterica USMARC-S3124.1)

1e-35

122) ascR
( YP_001144302.1 )

type III secretion system protein

NC_009350
(Aeromonas salmonicida A449)

2e-35

123) ssaR
( YP_008265618.1 )

flagellar biosynthesis protein FliP

NC_021820
(Salmonella enterica 08-1736)

9e-36

124) ssaR
( YP_005237289.1 )

type III secretion system protein

NC_016856
(Salmonella enterica 14028S)

9e-36

125) SEEH1578_16330
( YP_008247325.1 )

type III secretion system protein YscR

NC_021810
(Salmonella enterica 41578)

9e-36

126) yscR
( YP_005396816.1 )

type III secretion protein

NC_017046
(Salmonella enterica 798)

9e-36

127) SSPA1332
( YP_002142171.1 )

type III secretion system protein

NC_011147
(Salmonella enterica AKU12601)

9e-36

128) yscR
( YP_150685.1 )

type III secretion protein

NC_006511
(Salmonella enterica ATCC 9150)

9e-36

129) SU5_02035
( YP_006087669.1 )

Type III secretion inner membrane protein

NC_017623
(Salmonella enterica B182)

9e-36

130) ssaR
( YP_008255384.1 )

flagellar biosynthesis protein FliP

NC_021814
(Salmonella enterica CFSAN001921)

9e-36

131) CFSAN001992_04495
( YP_007470657.1 )

type III secretion system protein YscR

NC_020307
(Salmonella enterica CFSAN001992)

9e-36

132) ssaR
( YP_008260609.1 )

flagellar biosynthesis protein FliP

NC_021818
(Salmonella enterica CFSAN002050)

9e-36

133) ssaR
( YP_008249241.1 )

flagellar biosynthesis protein FliP

NC_021812
(Salmonella enterica CFSAN002069)

9e-36

134) epaP
( YP_002215713.1 )

type III secretion system protein

NC_011205
(Salmonella enterica CT_02021853)

9e-36

135) epaP
( YP_002114432.1 )

type III secretion system protein

NC_011094
(Salmonella enterica CVM19633)

9e-36

136) STMMW_14241
( YP_005232478.1 )

putative type III secretion protein

NC_016854
(Salmonella enterica D23580)

9e-36

137) ssaR
( NP_460384.1 )

type III secretion system protein

NC_003197
(Salmonella enterica LT2)

9e-36

138) yscR
( YP_002637868.1 )

type III secretion system protein

NC_012125
(Salmonella enterica RKS4594)

9e-36

139) ssaR
( YP_216427.1 )

type III secretion system protein

NC_006905
(Salmonella enterica SC-B67)

9e-36

140) SPAB_01906
( YP_001588129.1 )

type III secretion system protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

9e-36

141) yscR
( YP_005181263.1 )

putative type III secretion protein

NC_016810
(Salmonella enterica SL1344)

9e-36

142) epaP
( YP_002045422.1 )

type III secretion system protein

NC_011083
(Salmonella enterica SL476)

9e-36

143) epaP
( YP_002146623.1 )

type III secretion system protein

NC_011149
(Salmonella enterica SL483)

9e-36

144) ssaR
( YP_005242320.1 )

type III secretion system protein

NC_016857
(Salmonella enterica ST4/74)

9e-36

145) STMDT12_C14350
( YP_005247131.1 )

type III secretion system protein

NC_016860
(Salmonella enterica T000240)

9e-36

146) STU288_03415
( YP_007901788.1 )

type III secretion system protein YscR

NC_021151
(Salmonella enterica U288)

9e-36

147) ssaR
( YP_005251923.1 )

type III secretion system protein

NC_016863
(Salmonella enterica UK-1)

9e-36

148) SARI_01563
( YP_001570599.1 )

type III secretion system protein

NC_010067
(Salmonella enterica RSK2980)

2e-35

149) STAUR_6328
( YP_003955912.1 )

type III secretion apparatus protein yscr/hrcr

NC_014623
(Stigmatella aurantiaca DW4/3-1)

2e-35

150) sctR
( YP_004022632.1 )

type III secretion inner membrane protein SctR

NC_014718
(Burkholderia rhizoxinica HKI 454)

2e-35

151) YE105_P0026
( YP_004424928.1 )

type III secretion system protein

NC_015475
(Yersinia enterocolitica 105.5R(r))

3e-35

152) yscR
( YP_001004082.1 )

type III secretion system protein

NC_008791
(Yersinia enterocolitica 8081)

3e-35

153) Y11_p0741
( YP_006007922.1 )

type III secretion inner membrane protein

NC_017565
(Yersinia enterocolitica Y11)

3e-35

154) sctR
( YP_003039885.1 )

type iii secretion component protein sctr

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

3e-35

155) yscR
( NP_995367.1 )

type III secretion system protein

NC_005813
(Yersinia pestis 91001)

3e-35

156) yscR
( YP_001604476.1 )

type III secretion system protein

NC_010157
(Yersinia pestis Angola)

3e-35

157) YPA_CD0018
( YP_636810.1 )

type III secretion system protein

NC_008122
(Yersinia pestis Antiqua)

3e-35

158) yscR
( NP_395178.1 )

type III secretion system protein

NC_003131
(Yersinia pestis CO92)

3e-35

159) yscR
( YP_005503177.1 )

needle complex export protein

NC_017153
(Yersinia pestis D106004)

3e-35

160) yscR
( YP_005506960.1 )

needle complex export protein

NC_017157
(Yersinia pestis D182038)

3e-35

161) YPDSF_3973
( YP_001154602.1 )

type III secretion system protein

NC_009377
(Yersinia pestis Pestoides F)

3e-35

162) yscR
( YP_003560536.1 )

needle complex export protein

NC_014017
(Yersinia pestis Z176003)

3e-35

163) pYV0071
( YP_068480.1 )

type III secretion system protein

NC_006153
(Yersinia pseudotuberculosis IP 32953)

3e-35

164) YPTS_4289
( YP_001874689.1 )

type III secretion system protein

NC_010635
(Yersinia pseudotuberculosis PB1/+)

3e-35

165) SFHH103_04305
( YP_006575326.1 )

hypothetical protein

NC_018294
(Sinorhizobium fredii HH103)

4e-35

166) USDA257_p02850
( YP_006529157.1 )

putative translocation protein y4yL

NC_018179
(Sinorhizobium fredii USDA 257)

4e-35

167) PSPPH_2535
( YP_274731.1 )

type III secretion system protein

NC_005773
(Pseudomonas syringae 1448A)

6e-35

168) fliP1
( YP_005372092.1 )

type III secretion system protein

NC_017030
(Corallococcus coralloides DSM 2259)

1e-34

169) rhcR
( NP_444164.1 )

type III secretion system protein

NC_000914
(Sinorhizobium fredii NGR234)

1e-34

170) LILAB_35715
( YP_004670102.1 )

type III secretion system protein

NC_015711
(Myxococcus fulvus HW-1)

8e-35

171) STAUR_3046
( YP_003952665.1 )

type III secretion system inner membrane p family protein

NC_014623
(Stigmatella aurantiaca DW4/3-1)

3e-34

172) SG1305
( YP_454985.1 )

type III secretion system protein

NC_007712
(Sodalis glossinidius morsitans)

2e-34

173) NT01EI_0960
( YP_002932408.1 )

type III secretion apparatus protein, YscR/HrcR family, putative

NC_012779
(Edwardsiella ictaluri 93-146)

3e-34

174) MXAN_5647
( YP_633786.1 )

type III secretion system protein

NC_008095
(Myxococcus xanthus DK 1622)

3e-34

175) ssaR
( YP_002924940.1 )

type III secretion system protein

NC_012751
(Candidatus Hamiltonella defensa T5A)

7e-34

176) fliP
( YP_005371584.1 )

type III secretion system protein

NC_017030
(Corallococcus coralloides DSM 2259)

8e-34

177) hrcR
( YP_198720.1 )

type III secretion system protein

NC_006834
(Xanthomonas oryzae KACC10331)

2e-33

178) MXAN_2447
( YP_630667.1 )

type III secretion system protein

NC_008095
(Myxococcus xanthus DK 1622)

2e-33

179) hrcR
( NP_640757.1 )

type III secretion system protein

NC_003919
(Xanthomonas axonopodis 306)

3e-33

180) hrcR
( YP_004849999.1 )

type III secretion system protein

NC_016010
(Xanthomonas axonopodis F1)

3e-33

181) XAC29_02060
( YP_007634905.1 )

type III secretion system protein YscR

NC_020800
(Xanthomonas axonopodis Xac29-1)

3e-33

182) hrcR
( YP_005636495.1 )

type III secretion protein HrcR

NC_017271
(Xanthomonas campestris 756C)

3e-33

183) XC_3016
( YP_244084.1 )

type III secretion system protein

NC_007086
(Xanthomonas campestris 8004)

3e-33

184) hrcR
( YP_362153.1 )

type III secretion system protein

NC_007508
(Xanthomonas campestris 85-10)

3e-33

185) hrcR
( NP_636600.1 )

type III secretion system protein

NC_003902
(Xanthomonas campestris ATCC 33913)

3e-33

186) xccb100_3079
( YP_001904484.1 )

type III secretion system protein

NC_010688
(Xanthomonas campestris B100)

3e-33

187) hrcR
( YP_007648827.1 )

HrcR protein

NC_020815
(Xanthomonas citri Aw12879)

3e-33

188) XOO_0095
( YP_449124.1 )

type III secretion system protein

NC_007705
(Xanthomonas oryzae MAFF 311018)

3e-33

189) epaP
( YP_001911274.1 )

type III secretion system protein

NC_010717
(Xanthomonas oryzae PXO99A)

3e-33

190) hrcR
( YP_005630680.1 )

type III secretion protein HrcR

NC_017267
(Xanthomonas oryzae BLS256)

4e-33

191) Meso_0110
( YP_672680.1 )

type III secretion system protein

NC_008254
(Chelativorans sp. BNC1)

4e-33

192) MYSTI_02838
( YP_007359838.1 )

type III secretion system protein

NC_020126
(Myxococcus stipitatus DSM 14675)

7e-33

193) LILAB_19925
( YP_004666965.1 )

type III secretion system protein

NC_015711
(Myxococcus fulvus HW-1)

7e-33

194) MYSTI_06240
( YP_007363197.1 )

type III secretion system protein

NC_020126
(Myxococcus stipitatus DSM 14675)

1e-32

195) JCM7686_1775
( YP_008404643.1 )

type III secretion protein

NC_022041
(Paracoccus aminophilus JCM 7686)

9e-33

196) spaP
( YP_006216510.1 )

type III secretion system protein SpaP

NC_017731
(Providencia stuartii MRSN 2154)

9e-33

197) hrcR
( YP_004754990.1 )

type III secretion inner membrane protein

NC_015856
(Collimonas fungivorans Ter331)

3e-32

198) fliP
( YP_006716878.1 )

flagellar biosynthesis protein FliP

NC_007498
(Pelobacter carbinolicus DSM 2380)

6e-31

199) fliP
( YP_609306.1 )

flagellar biosynthesis protein FliP

NC_008027
(Pseudomonas entomophila L48)

2e-30

200) fliP
( YP_007030862.1 )

flagellar biosynthetic protein FliP

NC_019670
(Pseudomonas sp. UW4)

3e-30

201) fliP
( YP_004395820.1 )

flagellar biosynthetic protein FliP

NC_015425
(Clostridium botulinum BKT015925)

4e-30

202) fliP
( YP_347281.1 )

flagellar biosynthesis protein FliP

NC_007492
(Pseudomonas fluorescens Pf0-1)

4e-30

203) fliP
( YP_006325174.1 )

flagellar biosynthetic protein FliP

NC_017911
(Pseudomonas fluorescens A506)

5e-30

204) fliP
( YP_005929380.1 )

protein FliP

NC_017530
(Pseudomonas putida BIRD-1)

1e-29

205) fliP
( YP_006532961.1 )

flagellar biosynthesis protein FliP

NC_018220
(Pseudomonas putida DOT-T1E)

1e-29

206) fliP
( NP_746469.1 )

flagellar biosynthesis protein FliP

NC_002947
(Pseudomonas putida KT2440)

1e-29

207) PPS_3758
( YP_004703179.1 )

flagellar biosynthesis protein FliP

NC_015733
(Pseudomonas putida S16)

1e-29

208) Psefu_1935
( YP_004474002.1 )

flagellar biosynthetic protein FliP

NC_015556
(Pseudomonas fulva 12-X)

1e-29

209) Atc_1493
( YP_004748842.1 )

flagellar biosynthesis protein fliP

NC_015850
(Acidithiobacillus caldus SM-1)

5e-30

210) L483_24060
( YP_008096573.1 )

flagellar biosynthesis protein FliP

NC_021491
(Pseudomonas putida H8234)

5e-30

211) fliP
( YP_002873959.1 )

flagellar biosynthesis protein FliP

NC_012660
(Pseudomonas fluorescens SBW25)

6e-30

212) fliP
( YP_008112455.1 )

flagellar biosynthesis protein FliP

NC_021505
(Pseudomonas putida NBRC 14164)

6e-30

213) fliP
( YP_001750532.1 )

flagellar biosynthesis protein FliP

NC_010501
(Pseudomonas putida W619)

6e-30

214) fliP
( YP_003066310.1 )

flagellar biosynthesis protein FliP

NC_012988
(Methylobacterium extorquens DM4)

6e-30

215) fliP
( YP_001399618.1 )

flagellar biosynthesis protein FliP

NC_009708
(Yersinia pseudotuberculosis IP 31758)

7e-30

216) PSEBR_a1491
( YP_004352690.1 )

flagellar biosynthetic protein

NC_015379
(Pseudomonas brassicacearum NFM421)

9e-30

217) fliP
( YP_005206995.1 )

protein FliP

NC_016830
(Pseudomonas fluorescens F113)

9e-30

218) fliP
( YP_004846442.1 )

flagellar biosynthetic protein FliP

NC_016002
(Pseudogulbenkiania sp. NH8B)

9e-30

219) CK3_11030
( YP_007823328.1 )

flagellar biosynthetic protein FliP

NC_021035
(butyrate-producing bacterium SS3/4)

9e-30

220) fliP
( YP_007398170.1 )

flagellar biosynthesis protein FliP

NC_020209
(Pseudomonas poae RE*1-1-14)

9e-30

221) fliP
( YP_001670143.1 )

flagellar biosynthesis protein FliP

NC_010322
(Pseudomonas putida GB-1)

9e-30

222) fliP
( YP_007230563.1 )

flagellar biosynthesis protein FliP

NC_019905
(Pseudomonas putida PC9)

9e-30

223) fliP
( YP_001266852.1 )

flagellar biosynthesis protein FliP

NC_009512
(Pseudomonas putida F1)

9e-30

224) YSA_08109
( YP_006388272.1 )

flagellar biosynthesis protein FliP

NC_017986
(Pseudomonas putida ND6)

9e-30

225) fliP
( YP_236514.1 )

flagellar biosynthesis protein FliP

NC_007005
(Pseudomonas syringae B728a)

1e-29

226) fliP
( YP_007998982.1 )

flagellar biosynthetic protein FliP

NC_021237
(Pseudomonas fluorescens CHA0)

1e-29

227) fliP
( YP_258777.2 )

flagellar biosynthesis protein FliP

NC_004129
(Pseudomonas protegens Pf-5)

1e-29

228) fliP
( YP_275528.1 )

flagellar biosynthesis protein FliP

NC_005773
(Pseudomonas syringae 1448A)

1e-29

229) fliP
( NP_791795.1 )

flagellar biosynthetic protein FliP

NC_004578
(Pseudomonas syringae DC3000)

1e-29

230) fliP
( YP_002419488.1 )

flagellar biosynthesis protein FliP

NC_011757
(Methylobacterium chloromethanicum CM4)

1e-29

231) fliP
( YP_002961672.1 )

flagellar biosynthesis protein FliP

NC_012808
(Methylobacterium extorquens AM1)

1e-29

232) fliP
( YP_001638112.1 )

flagellar biosynthesis protein FliP

NC_010172
(Methylobacterium extorquens PA1)

1e-29

233) fliP
( YP_003613775.1 )

Flagellar biosynthetic protein FliP

NC_014121
(Enterobacter cloacae ATCC 13047)

2e-29

234) A3UG_14735
( YP_006478375.1 )

Flagellar biosynthetic protein FliP

NC_018079
(Enterobacter cloacae SDM)

2e-29

235) fliP
( NP_994319.1 )

flagellar biosynthesis protein FliP

NC_005810
(Yersinia pestis 91001)

2e-29

236) fliP
( YP_005520003.1 )

flagellar biosynthesis protein FliP

NC_017168
(Yersinia pestis A1122)

2e-29

237) fliP
( YP_001604861.1 )

flagellar biosynthesis protein FliP

NC_010159
(Yersinia pestis Angola)

2e-29

238) fliP
( YP_652991.1 )

flagellar biosynthesis protein FliP

NC_008150
(Yersinia pestis Antiqua)

2e-29

239) fliP
( YP_002345771.1 )

flagellar biosynthesis protein FliP

NC_003143
(Yersinia pestis CO92)

2e-29

240) fliP
( YP_005503829.1 )

putative flagellar assembly protein

NC_017154
(Yersinia pestis D106004)

2e-29

241) fliP
( YP_005507700.1 )

putative flagellar assembly protein

NC_017160
(Yersinia pestis D182038)

2e-29

242) YPC_3863
( YP_005625585.1 )

Flagellar biosynthesis protein fliP

NC_017265
(Yersinia pestis Harbin 35)

2e-29

243) fliP
( NP_670767.1 )

flagellar biosynthesis protein FliP

NC_004088
(Yersinia pestis KIM)

2e-29

244) fliP
( YP_646499.1 )

flagellar biosynthesis protein FliP

NC_008149
(Yersinia pestis Nepal516)

2e-29

245) fliP
( YP_001161877.1 )

flagellar biosynthesis protein FliP

NC_009381
(Yersinia pestis Pestoides F)

2e-29

246) fliP
( YP_003566835.1 )

putative flagellar assembly protein

NC_014029
(Yersinia pestis Z176003)

2e-29

247) fliP
( YP_071844.1 )

flagellar biosynthesis protein FliP

NC_006155
(Yersinia pseudotuberculosis IP 32953)

2e-29

248) fliP
( YP_001873899.1 )

flagellar biosynthesis protein FliP

NC_010634
(Yersinia pseudotuberculosis PB1/+)

2e-29

249) fliP
( YP_001719460.1 )

flagellar biosynthesis protein FliP

NC_010465
(Yersinia pseudotuberculosis YPIII)

2e-29

250) fliP
( YP_002796342.1 )

flagellar biosynthesis protein FliP

NC_012559
(Laribacter hongkongensis HLHK9)

3e-29

251) fliP
( YP_007710437.1 )

flagellar biosynthesis protein FliP

NC_020912
(Pseudomonas aeruginosa B136-33)

3e-29

252) fliP
( YP_006483676.1 )

flagellar biosynthesis protein FliP

NC_018080
(Pseudomonas aeruginosa DK2)

3e-29

253) fliP
( YP_002441550.1 )

flagellar biosynthesis protein FliP

NC_011770
(Pseudomonas aeruginosa LESB58)

3e-29

254) fliP
( YP_005976268.1 )

flagellar biosynthesis protein FliP

NC_017548
(Pseudomonas aeruginosa M18)

3e-29

255) fliP
( YP_005980573.1 )

flagellar biosynthesis protein

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

3e-29

256) fliP
( NP_250137.1 )

flagellar biosynthesis protein FliP

NC_002516
(Pseudomonas aeruginosa PAO1)

3e-29

257) M062_07750
( YP_008131995.1 )

flagellar biosynthesis protein FliP

NC_021577
(Pseudomonas aeruginosa RP73)

3e-29

258) fliP
( YP_791806.1 )

flagellar biosynthesis protein FliP

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

3e-29

259) fliP
( YP_006915428.1 )

flagellar biosynthesis protein FliP

NC_018868
(Simiduia agarivorans SA1)

4e-29

260) fliP
( YP_076818.1 )

flagellar biosynthesis protein FliP

NC_006177
(Symbiobacterium thermophilum IAM 14863)

4e-29

261) fliP
( YP_001923318.1 )

flagellar biosynthesis protein FliP

NC_010725
(Methylobacterium populi BJ001)

4e-29

262) YE105_C3298
( YP_004299495.1 )

lateral flagellar export/assembly protein

NC_015224
(Yersinia enterocolitica 105.5R(r))

5e-29

263) fliP
( YP_001349235.1 )

flagellar biosynthesis protein FliP

NC_009656
(Pseudomonas aeruginosa PA7)

5e-29

264) fliP
( YP_587429.1 )

flagellar biosynthesis protein FliP

NC_007974
(Cupriavidus metallidurans CH34)

6e-29

265) fliP
( YP_004673438.1 )

IIISP family Type III (virulence-related) secretory pathway protein

NC_015714
(Treponema paraluiscuniculi Cuniculi A)

6e-29

266) fliP
( YP_003978803.1 )

flagellar biosynthetic protein FliP

NC_014640
(Achromobacter xylosoxidans A8)

8e-29

267) fliP
( NP_970074.1 )

flagellar biosynthesis protein FliP

NC_005363
(Bdellovibrio bacteriovorus HD100)

8e-29

268) fliP
( YP_007024188.1 )

flagellar biosynthesis protein FliP

NC_019567
(Bdellovibrio bacteriovorus Tiberius)

8e-29

269) fliP
( YP_003539639.1 )

flagellar biosynthetic protein

NC_013971
(Erwinia amylovora ATCC 49946)

1e-28

270) fliP3
( YP_003532039.1 )

flagellar biosynthetic protein FliP

NC_013961
(Erwinia amylovora CFBP1430)

1e-28

271) fliP
( YP_002129765.1 )

flagellar biosynthesis protein FliP

NC_011144
(Phenylobacterium zucineum HLK1)

1e-28

272) fliP
( YP_005801745.1 )

flagellar biosynthetic protein FliP

NC_017390
(Erwinia pyrifoliae DSM 12163)

2e-28

273) fliP
( YP_002647972.1 )

flagellar biosynthetic protein FliP

NC_012214
(Erwinia pyrifoliae Ep1/96)

2e-28

274) M301_1012
( YP_003673973.1 )

flagellar biosynthetic protein FliP

NC_014207
(Methylotenera versatilis 301)

2e-28

275) fliP
( YP_008104325.1 )

flagellar biosynthesis protein FliP

NC_021499
(Pseudomonas resinovorans NBRC 106553)

8e-29

276) NH44784_042871
( YP_008031352.1 )

Flagellar biosynthesis protein FliP

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

9e-29

277) fliP
( YP_005230509.1 )

IIISP family Type III (virulence-related) secretory pathway protein

NC_016848
(Treponema pallidum CDC2)

9e-29

278) fliP
( YP_005631575.1 )

flagellar biosynthetic protein FliP

NC_017268
(Treponema pallidum Chicago)

9e-29

279) fliP
( YP_005223961.1 )

IIISP family Type III (virulence-related) secretory pathway protein

NC_016844
(Treponema pallidum DAL-1)

9e-29

280) fliP
( YP_007936524.1 )

IIISP family Type III (virulence-related) secretory pathway protein

NC_021179
(Treponema pallidum Fribourg-Blanc)

9e-29

281) fliP
( YP_005222901.1 )

IIISP family Type III (virulence-related) secretory pathway protein

NC_016843
(Treponema pallidum Gauthier)

9e-29

282) fliP
( YP_006870019.1 )

IIISP family Type III (virulence-related) secretory pathway protein

NC_018722
(Treponema pallidum Mexico A)

9e-29

283) fliP
( NP_219155.1 )

flagellar biosynthesis protein FliP

NC_000919
(Treponema pallidum Nichols)

9e-29

284) fliP
( YP_008091548.1 )

IIISP family Type III (virulence-related) secretory pathway protein

NC_021490
(Treponema pallidum Nichols)

9e-29

285) fliP
( YP_005221832.1 )

IIISP family Type III (virulence-related) secretory pathway protein

NC_016842
(Treponema pallidum SamoaD)

9e-29

286) ENC_28610
( YP_007846393.1 )

flagellar biosynthetic protein FliP

NC_021046
(Enterobacter cloacae NCTC 9394)

2e-28

287) fliP
( YP_005816715.1 )

Flagellar biosynthetic protein FliP

NC_017445
(Erwinia sp. Ejp617)

2e-28

288) fliP
( YP_315368.1 )

flagellar biosynthesis protein FliP

NC_007404
(Thiobacillus denitrificans ATCC 25259)

2e-28

289) lfiP
( YP_003363875.1 )

flagellar export/assembly protein

NC_013716
(Citrobacter rodentium ICC168)

3e-28

290) Calkro_0478
( YP_004023197.1 )

flagellar biosynthetic protein flip

NC_014720
(Caldicellulosiruptor kronotskyensis 2002)

3e-28

291) Cwoe_0066
( YP_003391877.1 )

flagellar biosynthetic protein FliP

NC_013739
(Conexibacter woesei DSM 14684)

4e-28

292) Athe_2157
( YP_002574005.1 )

flagellar biosynthetic protein FliP

NC_012034
(Caldicellulosiruptor bescii DSM 6725)

4e-28

293) Calla_1939
( YP_004799490.1 )

flagellar biosynthetic protein FliP

NC_015949
(Caldicellulosiruptor lactoaceticus 6A)

4e-28

294) Calhy_0599
( YP_003991709.1 )

flagellar biosynthetic protein flip

NC_014652
(Caldicellulosiruptor hydrothermalis 108)

5e-28

295) Calkr_0422
( YP_004025586.1 )

flagellar biosynthetic protein flip

NC_014721
(Caldicellulosiruptor kristjanssonii 177R1B)

5e-28

296) fliP
( YP_001682992.1 )

flagellar biosynthesis protein FliP

NC_010338
(Caulobacter sp. K31)

6e-28

297) fliP
( YP_001630746.1 )

flagellar biosynthesis protein FliP

NC_010170
(Bordetella petrii DSM 12804)

6e-28

298) lfiP
( YP_006094582.1 )

lateral flagellar export/assembly protein (FliP-like)

NC_017626
(Escherichia coli 042)

1e-27

299) fliP
( YP_001742352.1 )

flagellar biosynthesis protein FliP

NC_010498
(Escherichia coli SMS-3-5)

1e-27

300) fliP
( YP_002411025.1 )

flagellar biosynthesis protein FliP

NC_011751
(Escherichia coli UMN026)

1e-27

301) fliP
( YP_005093325.1 )

flagellar biosynthesis protein FliP

NC_016745
(Oceanimonas sp. GK1)

1e-27

302) Daud_1753
( YP_001717881.1 )

flagellar biosynthetic protein FliP

NC_010424
(Candidatus Desulforudis audaxviator MP104C)

1e-27

303) fliP
( YP_004751609.1 )

flagellar biosynthesis protein

NC_015856
(Collimonas fungivorans Ter331)

6e-28

304) fliP
( YP_001188299.1 )

flagellar biosynthesis protein FliP

NC_009439
(Pseudomonas mendocina ymp)

8e-28

305) fliP
( YP_455736.1 )

flagellar biosynthesis protein FliP

NC_007712
(Sodalis glossinidius morsitans)

9e-28

306) NT01EI_2431
( YP_002933836.1 )

flagellar biosynthetic protein FliP, putative

NC_012779
(Edwardsiella ictaluri 93-146)

9e-28

307) ETAC_10205
( YP_007629522.1 )

Flagellar biosynthesis protein FliP

NC_020796
(Edwardsiella tarda C07-087)

9e-28

308) fliP
( YP_003296198.1 )

flagellar biosynthesis pathway protein FliP

NC_013508
(Edwardsiella tarda EIB202)

9e-28

309) fliP
( YP_005699542.1 )

Flagellar biosynthesis protein FliP

NC_017309
(Edwardsiella tarda FL6-60)

9e-28

310) fliP
( YP_005803031.1 )

flagellar biosynthetic protein FliP

NC_017390
(Erwinia pyrifoliae DSM 12163)

9e-28

311) fliP
( YP_002649124.1 )

flagellar biosynthesis protein FliP

NC_012214
(Erwinia pyrifoliae Ep1/96)

9e-28

312) fliP
( YP_005819171.1 )

flagellar biosynthesis protein FliP

NC_017445
(Erwinia sp. Ejp617)

9e-28

313) fliP1
( YP_006137309.1 )

Flagellar biosynthesis protein

NC_017644
(Escherichia coli NA114)

9e-28

314) MDS_1862
( YP_004379645.1 )

flagellar biosynthesis protein FliP

NC_015410
(Pseudomonas mendocina NK-01)

1e-27

315) COB47_1938
( YP_003841191.1 )

flagellar biosynthetic protein FliP

NC_014392
(Caldicellulosiruptor obsidiansis OB47)

1e-27

316) fliP
( NP_992929.2 )

flagellar biosynthesis protein FliP

NC_005810
(Yersinia pestis 91001)

2e-27

317) fliP
( YP_651108.2 )

flagellar biosynthesis protein FliP

NC_008150
(Yersinia pestis Antiqua)

2e-27

318) fliP
( NP_669792.2 )

flagellar biosynthesis protein FliP

NC_004088
(Yersinia pestis KIM)

2e-27

319) fliP
( YP_648231.2 )

flagellar biosynthesis protein FliP

NC_008149
(Yersinia pestis Nepal516)

2e-27

320) fliP
( YP_070220.2 )

flagellar biosynthesis protein FliP

NC_006155
(Yersinia pseudotuberculosis IP 32953)

2e-27

321) fliP
( YP_786224.1 )

flagellar biosynthesis protein FliP

NC_010645
(Bordetella avium 197N)

2e-27

322) Dd703_1550
( YP_002987172.1 )

flagellar biosynthetic protein FliP

NC_012880
(Dickeya dadantii Ech703)

2e-27

323) fliP
( YP_003538571.1 )

flagellar biosynthetic protein

NC_013971
(Erwinia amylovora ATCC 49946)

2e-27

324) fliP1
( YP_003530859.1 )

flagellar biosynthetic protein FliP

NC_013961
(Erwinia amylovora CFBP1430)

2e-27

325) fliP
( YP_001907927.1 )

flagellar biosynthesis protein FliP

NC_010694
(Erwinia tasmaniensis Et1/99)

2e-27

326) lfiP
( YP_003232796.1 )

putative lateral flagellar biosynthesis protein

NC_013364
(Escherichia coli 11128)

2e-27

327) fliP
( YP_003227339.1 )

flagellar biosynthesis protein FliP

NC_013361
(Escherichia coli 11368)

2e-27

328) fliP
( YP_001726333.1 )

flagellar biosynthesis protein FliP

NC_010468
(Escherichia coli ATCC 8739)

2e-27

329) EKO11_3667
( YP_005279305.1 )

flagellar biosynthetic protein FliP

NC_016902
(Escherichia coli KO11FL)

2e-27

330) fliP2
( YP_006162587.1 )

flagellar biosynthesis protein FliP

NC_017660
(Escherichia coli KO11FL)

2e-27

331) fliP
( YP_008563399.1 )

flagellar biosynthesis protein FliP

NC_022364
(Escherichia coli LY180)

2e-27

332) lfiP
( YP_006167277.1 )

Flagellar biosynthetic protein FliP

NC_017663
(Escherichia coli P12b)

2e-27

333) lfiP
( YP_006123038.1 )

lateral flagellar export/assembly protein

NC_017635
(Escherichia coli W)

2e-27

334) fliP2
( YP_006171701.1 )

flagellar biosynthesis protein FliP

NC_017664
(Escherichia coli W)

2e-27

335) fliP
( YP_003742044.1 )

flagellar biosynthesis protein

NC_014306
(Erwinia billingiae Eb661)

3e-27

336) fliP
( YP_003468603.1 )

flagellar biosynthesis protein

NC_013892
(Xenorhabdus bovienii SS-2004)

3e-27

337) Hprae_0560
( YP_005835874.1 )

flagellar biosynthetic protein FliP

NC_017455
(Halanaerobium praevalens DSM 2228)

3e-27

338) PT7_0779
( YP_004415943.1 )

flagellar biosynthesis protein FliP

NC_015458
(Pusillimonas sp. T7-7)

3e-27

339) fliP
( YP_003041460.1 )

flagellar biosynthetic protein flip precursor

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

4e-27

340) fliP
( NP_929205.1 )

flagellar biosynthesis protein FliP

NC_005126
(Photorhabdus luminescens TTO1)

4e-27

341) fliP
( YP_002523316.1 )

flagellar biosynthetic protein FliP

NC_011961
(Thermomicrobium roseum DSM 5159)

5e-27

342) fliP
( YP_003899437.1 )

flagellar biosynthesis protein FliP

NC_014532
(Halomonas elongata DSM 2581)

6e-27

343) D781_2730
( YP_007345166.1 )

flagellar biosynthetic protein FliP

NC_020064
(Serratia marcescens FGI94)

1e-26

344) fliP
( YP_003211028.1 )

flagellar biosynthetic protein fliP

NC_013282
(Cronobacter turicensis z3032)

6e-27

345) fliP
( YP_003883615.1 )

flagellar biosynthesis protein fliP

NC_014500
(Dickeya dadantii 3937)

6e-27

346) Mesop_2004
( YP_004610578.1 )

flagellar biosynthetic protein FliP

NC_015675
(Mesorhizobium opportunistum WSM2075)

6e-27

347) Dd1591_1566
( YP_003003899.1 )

flagellar biosynthetic protein FliP

NC_012912
(Dickeya zeae Ech1591)

7e-27

348) Desgi_2217
( YP_007945322.1 )

flagellar biosynthetic protein FliP

NC_021184
(Desulfotomaculum gibsoniae DSM 7213)

7e-27

349) Mesci_1948
( YP_004141151.1 )

flagellar biosynthetic protein FliP

NC_014923
(Mesorhizobium ciceri WSM1271)

7e-27

350) Pat9b_2399
( YP_004116257.1 )

flagellar biosynthetic protein FliP

NC_014837
(Pantoea sp. At-9b)

9e-27

351) ST548_p6298
( YP_007388300.1 )

Flagellar biosynthesis protein FliP

NC_020181
(Enterobacter aerogenes EA1509E)

1e-26

352) fliP
( YP_004593337.1 )

flagellar biosynthesis protein FliP

NC_015663
(Enterobacter aerogenes KCTC 2190)

1e-26

353) fliP
( YP_006342565.1 )

flagellar biosynthesis protein FliP

NC_017933
(Cronobacter sakazakii ES15)

1e-26

354) CSSP291_05910
( YP_007440068.1 )

flagellar biosynthesis protein FliP

NC_020260
(Cronobacter sakazakii Sp291)

1e-26

355) Dd586_1528
( YP_003333101.1 )

flagellar biosynthetic protein FliP

NC_013592
(Dickeya dadantii Ech586)

1e-26

356) fliP
( YP_001177259.1 )

flagellar biosynthesis protein FliP

NC_009436
(Enterobacter sp. 638)

1e-26

357) H650_09085
( YP_008107643.1 )

flagellar biosynthesis protein FliP

NC_021500
(Enterobacter sp. R4-368)

1e-26

358) fliP
( YP_008230983.1 )

flagellar biosynthesis protein FliP

NC_021741
(Serratia liquefaciens ATCC 27592)

2e-26

359) fliP
( YP_008398277.1 )

flagellar biosynthetic protein

NC_022000
(Proteus mirabilis BB2000)

2e-26

360) fliP
( YP_002151371.1 )

flagellar biosynthetic protein

NC_010554
(Proteus mirabilis HI4320)

2e-26

361) Calow_1847
( YP_004003176.1 )

flagellar biosynthetic protein flip

NC_014657
(Caldicellulosiruptor owensensis OL)

2e-26

362) fliP
( NP_419767.1 )

flagellar biosynthesis protein FliP

NC_002696
(Caulobacter crescentus CB15)

2e-26

363) fliP
( YP_002516375.1 )

flagellar biosynthesis protein FliP

NC_011916
(Caulobacter crescentus NA1000)

2e-26

364) fliP
( YP_001437348.1 )

flagellar biosynthesis protein FliP

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

2e-26

365) fliP
( YP_008266182.1 )

flagellar biosynthesis protein FliP

NC_021820
(Salmonella enterica 08-1736)

2e-26

366) fliP
( YP_005237949.1 )

flagellar biosynthesis protein FliP

NC_016856
(Salmonella enterica 14028S)

2e-26

367) fliP
( YP_005397341.1 )

flagellar biosynthetic protein FliP

NC_017046
(Salmonella enterica 798)

2e-26

368) fliP
( YP_008254817.1 )

flagellar biosynthesis protein FliP

NC_021814
(Salmonella enterica CFSAN001921)

2e-26

369) STMMW_19591
( YP_005232998.1 )

flagellar biosynthetic protein FliP

NC_016854
(Salmonella enterica D23580)

2e-26

370) fliP
( NP_460932.1 )

flagellar biosynthesis protein FliP

NC_003197
(Salmonella enterica LT2)

2e-26

371) fliP
( YP_005181802.1 )

flagellar biosynthetic protein FliP

NC_016810
(Salmonella enterica SL1344)

2e-26

372) fliP
( YP_005242887.1 )

flagellar biosynthesis protein FliP

NC_016857
(Salmonella enterica ST4/74)

2e-26

373) fliP
( YP_005247696.1 )

flagellar biosynthesis protein FliP

NC_016860
(Salmonella enterica T000240)

2e-26

374) fliP
( YP_007902356.1 )

flagellar biosynthesis protein FliP

NC_021151
(Salmonella enterica U288)

2e-26

375) fliP
( YP_005252485.1 )

flagellar biosynthesis protein FliP

NC_016863
(Salmonella enterica UK-1)

2e-26

376) fliP
( YP_003613714.1 )

flagellar biosynthesis protein FliP

NC_014121
(Enterobacter cloacae ATCC 13047)

2e-26

377) fliP
( YP_004952741.1 )

flagellar biosynthetic protein fliP

NC_016514
(Enterobacter cloacae EcWSU1)

2e-26

378) fliP
( YP_006478314.1 )

flagellar biosynthesis protein FliP

NC_018079
(Enterobacter cloacae SDM)

2e-26

379) fliP
( YP_008138959.1 )

flagellar biosynthetic protein flip

NC_021591
(Serratia odorifera 4Rx13)

3e-26

380) SerAS9_3041
( YP_004506421.1 )

flagellar biosynthetic protein FliP

NC_015567
(Serratia plymuthica AS9)

3e-26

381) fliP
( YP_008159817.1 )

flagellar biosynthesis protein FliP

NC_021659
(Serratia plymuthica S13)

3e-26

382) SerAS12_3042
( YP_004501468.1 )

flagellar biosynthetic protein FliP

NC_015566
(Serratia sp. AS12)

3e-26

383) SerAS13_3044
( YP_006025883.1 )

flagellar biosynthetic protein FliP

NC_017573
(Serratia sp. AS13)

3e-26

384) Ser39006_3174
( YP_008523556.1 )

flagellar biosynthetic protein FliP

NC_022268
(Serratia sp. ATCC 39006)

3e-26

385) fliP
( YP_003931431.1 )

flagellar biosynthetic protein fliP

NC_014562
(Pantoea vagans C9-1)

3e-26

386) MU9_1792
( YP_007505211.1 )

Flagellar biosynthesis protein FliP

NC_020418
(Morganella morganii KT)

3e-26

387) fliP
( YP_002226128.1 )

flagellar biosynthesis protein FliP

NC_011274
(Salmonella enterica 287/91)

3e-26

388) SBOV20391
( YP_008505882.1 )

flagellar biosynthetic protein FliP

NC_022241
(Salmonella enterica 3114)

3e-26

389) fliP
( YP_008481487.1 )

flagellar biosynthetic protein flip precursor

NC_022221
(Salmonella enterica CDC1983-67)

3e-26

390) fliP
( YP_008308242.1 )

flagellar biosynthesis protein FliP

NC_021844
(Salmonella enterica CFSAN000189)

3e-26

391) fliP
( YP_007470075.1 )

flagellar biosynthesis protein FliP

NC_020307
(Salmonella enterica CFSAN001992)

3e-26

392) fliP
( YP_008261244.1 )

flagellar biosynthesis protein FliP

NC_021818
(Salmonella enterica CFSAN002050)

3e-26

393) STY2187
( NP_456540.1 )

flagellar biosynthetic protein FliP

NC_003198
(Salmonella enterica CT18)

3e-26

394) fliP
( YP_002215107.1 )

flagellar biosynthesis protein FliP

NC_011205
(Salmonella enterica CT_02021853)

3e-26

395) fliP
( YP_002115013.1 )

flagellar biosynthesis protein FliP

NC_011094
(Salmonella enterica CVM19633)

3e-26

396) STBHUCCB_9660
( YP_005216542.1 )

Flagellar biosynthetic protein fliP

NC_016832
(Salmonella enterica P-stx-12)

3e-26

397) fliP
( YP_002243159.1 )

flagellar biosynthesis protein FliP

NC_011294
(Salmonella enterica P125109)

3e-26

398) fliP
( YP_002637320.1 )

flagellar biosynthesis protein FliP

NC_012125
(Salmonella enterica RKS4594)

3e-26

399) fliP
( YP_005213029.1 )

flagellar biosynthetic protein flip precursor

NC_016831
(Salmonella enterica RKS5078)

3e-26

400) fliP
( YP_001570011.1 )

flagellar biosynthesis protein FliP

NC_010067
(Salmonella enterica RSK2980)

3e-26

401) fliP
( YP_008381167.1 )

flagellar biosynthesis protein FliP

NC_021984
(Salmonella enterica S06004)

3e-26

402) fliP
( YP_216971.1 )

flagellar biosynthesis protein FliP

NC_006905
(Salmonella enterica SC-B67)

3e-26

403) fliP
( YP_001587417.1 )

flagellar biosynthesis protein FliP

NC_010102
(Salmonella enterica SGSC4150; SPB7)

3e-26

404) fliP
( YP_002041244.1 )

flagellar biosynthesis protein FliP

NC_011080
(Salmonella enterica SL254)

3e-26

405) fliP
( YP_002146044.1 )

flagellar biosynthesis protein FliP

NC_011149
(Salmonella enterica SL483)

3e-26

406) fliP
( NP_804727.1 )

flagellar biosynthesis protein FliP

NC_004631
(Salmonella enterica Ty2)

3e-26

407) fliP
( YP_007925244.1 )

flagellar biosynthesis protein FliP

NC_021176
(Salmonella enterica Ty21a)

3e-26

408) SN31241_30780
( YP_008360994.1 )

Flagellar biosynthetic protein fliP

NC_021902
(Salmonella enterica USMARC-S3124.1)

3e-26

409) fliP
( NP_707833.3 )

flagellar biosynthesis protein

NC_004337
(Shigella flexneri 301)

3e-26

410) Entcl_1801
( YP_003941341.1 )

flagellar biosynthetic protein FliP

NC_014618
(Enterobacter cloacae SCF1)

3e-26

411) fliP
( YP_574016.1 )

flagellar biosynthesis protein FliP

NC_007963
(Chromohalobacter salexigens DSM 3043)

4e-26

412) Rta_29680
( YP_004620091.1 )

translocation protein in type III secretion, membrane protein

NC_015677
(Ramlibacter tataouinensis TTB310)

4e-26

413) D782_1687
( YP_007339871.1 )

flagellar biosynthetic protein FliP

NC_020063
(Enterobacteriaceae bacterium FGI 57)

4e-26

414) fliP
( YP_006032632.1 )

flagellar biosynthetic protein flip

NC_017575
(Ralstonia solanacearum Po82)

4e-26

415) Tmar_0992
( YP_004101832.1 )

flagellar biosynthetic protein FliP

NC_014831
(Thermaerobacter marianensis DSM 12885)

4e-26

416) fliP
( YP_007406771.1 )

flagellar biosynthetic protein FliP

NC_020211
(Serratia marcescens WW4)

5e-26

417) Entas_2744
( YP_004829256.1 )

flagellar biosynthetic protein FliP

NC_015968
(Enterobacter asburiae LF7a)

5e-26

418) A464_2127
( YP_008322722.1 )

Flagellar biosynthesis protein FliP

NC_021870
(Salmonella bongori N268-08)

5e-26

419) fliP
( YP_004730660.1 )

flagellar biosynthetic protein FliP

NC_015761
(Salmonella bongori NCTC 12419)

5e-26

420) fliP
( YP_008247887.1 )

flagellar biosynthesis protein FliP

NC_021810
(Salmonella enterica 41578)

5e-26

421) SU5_02582
( YP_006088206.1 )

Flagellar biosynthesis protein FliP

NC_017623
(Salmonella enterica B182)

5e-26

422) fliP
( YP_008253121.1 )

flagellar biosynthesis protein FliP

NC_021812
(Salmonella enterica CFSAN002069)

5e-26

423) fliP
( YP_002046030.1 )

flagellar biosynthesis protein FliP

NC_011083
(Salmonella enterica SL476)

5e-26

424) fliP
( YP_006579300.1 )

flagellar biosynthesis protein FliP

NC_018405
(Enterobacter cloacae ENHKU01)

5e-26

425) fliP
( YP_008237688.1 )

Flagellar biosynthesis protein FliP

NC_021745
(Ralstonia solanacearum FQY_4)

5e-26

426) fliP
( NP_521936.1 )

flagellar biosynthesis protein FliP

NC_003296
(Ralstonia solanacearum GMI1000)

5e-26

427) fliP
( YP_008106948.1 )

flagellar biosynthesis protein FliP

NC_021500
(Enterobacter sp. R4-368)

6e-26

428) fliP
( YP_001458737.1 )

flagellar biosynthesis protein FliP

NC_009800
(Escherichia coli HS)

6e-26

429) fliP
( YP_003365583.1 )

flagellar biosynthetic protein FliP

NC_013716
(Citrobacter rodentium ICC168)

7e-26

430) ENC_42160
( YP_007847461.1 )

flagellar biosynthetic protein FliP

NC_021046
(Enterobacter cloacae NCTC 9394)

7e-26

431) fliP
( YP_003749322.1 )

fliP: flagellar biosynthesis protein. fliP/mopC/spaP family

NC_014310
(Ralstonia solanacearum PSI07)

7e-26

432) fliP
( YP_002383064.1 )

flagellar biosynthesis protein FliP

NC_011740
(Escherichia fergusonii ATCC 35469)

8e-26

433) fliP
( YP_003234943.1 )

flagellar biosynthesis protein FliP

NC_013364
(Escherichia coli 11128)

1e-25

434) fliP
( YP_003229814.1 )

flagellar biosynthesis protein FliP

NC_013361
(Escherichia coli 11368)

1e-25

435) fliP
( YP_669784.1 )

flagellar biosynthesis protein FliP

NC_008253
(Escherichia coli 536)

1e-25

436) fliP
( YP_006106267.1 )

flagellar biosynthetic protein FliP

NC_017631
(Escherichia coli ABU 83972)

1e-25

437) fliP
( YP_001724673.1 )

flagellar biosynthesis protein FliP

NC_010468
(Escherichia coli ATCC 8739)

1e-25

438) fliP
( YP_006144296.1 )

flagellar biosynthesis protein

NC_017646
(Escherichia coli CE10)

1e-25

439) fliP
( NP_754257.1 )

flagellar biosynthesis protein FliP

NC_004431
(Escherichia coli CFT073)

1e-25

440) fliP
( YP_006154289.1 )

flagellar biosynthesis protein FliP

NC_017652
(Escherichia coli clone D i14)

1e-25

441) fliP
( YP_006149370.1 )

flagellar biosynthesis protein FliP

NC_017651
(Escherichia coli clone D i2)

1e-25

442) ETEC_2051
( YP_006115617.1 )

flagellar biosynthetic protein FliP

NC_017633
(Escherichia coli ETEC H10407)

1e-25

443) fliP
( YP_002407120.1 )

flagellar biosynthesis protein FliP

NC_011750
(Escherichia coli IAI39)

1e-25

444) EKO11_1826
( YP_005277507.1 )

flagellar biosynthetic protein FliP

NC_016902
(Escherichia coli KO11FL)

1e-25

445) fliP
( YP_006164919.1 )

flagellar biosynthesis protein FliP

NC_017660
(Escherichia coli KO11FL)

1e-25

446) fliP
( YP_002556821.1 )

flagellar biosynthetic protein fliP

NC_011993
(Escherichia coli LF82)

1e-25

447) fliP
( YP_008565120.1 )

flagellar biosynthesis protein FliP

NC_022364
(Escherichia coli LY180)

1e-25

448) fliP
( YP_006139128.1 )

Flagellar biosynthesis protein

NC_017644
(Escherichia coli NA114)

1e-25

449) fliP
( YP_006120302.1 )

flagellar biosynthesis protein FliP

NC_017634
(Escherichia coli NRG 857C)

1e-25

450) fliP
( YP_006168111.1 )

Flagellar biosynthetic protein FliP precursor

NC_017663
(Escherichia coli P12b)

1e-25

451) fliP
( YP_002293454.1 )

flagellar biosynthesis protein FliP

NC_011415
(Escherichia coli SE11)

1e-25

452) ECSF_1800
( YP_003349790.1 )

flagellar biosynthetic protein FliP

NC_013654
(Escherichia coli SE15)

1e-25

453) fliP
( YP_002412960.1 )

flagellar biosynthesis protein FliP

NC_011751
(Escherichia coli UMN026)

1e-25

454) fliP
( YP_006134171.1 )

flagellar biosynthetic protein FliP

NC_017641
(Escherichia coli UMNK88)

1e-25

455) fliP
( YP_006124817.1 )

flagellar biosynthesis protein

NC_017635
(Escherichia coli W)

1e-25

456) fliP
( YP_006173528.1 )

flagellar biosynthesis protein FliP

NC_017664
(Escherichia coli W)

1e-25

457) fliP
( YP_001879727.1 )

flagellar biosynthesis protein FliP

NC_010658
(Shigella boydii CDC 3083-94)

1e-25

458) fliP
( YP_689437.1 )

flagellar biosynthesis protein FliP

NC_008258
(Shigella flexneri 8401)

1e-25

459) fliP
( YP_006096412.1 )

flagellar biosynthetic protein FliP

NC_017626
(Escherichia coli 042)

2e-25

460) fliP
( YP_003222125.1 )

flagellar biosynthesis protein FliP

NC_013353
(Escherichia coli 12009)

2e-25

461) fliP
( YP_006769620.1 )

flagellar biosynthesis protein FliP

NC_018650
(Escherichia coli 2009EL-2050)

2e-25

462) fliP
( YP_006783745.1 )

flagellar biosynthesis protein FliP

NC_018661
(Escherichia coli 2009EL-2071)

2e-25

463) fliP
( YP_006778674.1 )

flagellar biosynthesis protein FliP

NC_018658
(Escherichia coli 2011C-3493)

2e-25

464) fliP
( YP_002403220.1 )

flagellar biosynthesis protein FliP

NC_011748
(Escherichia coli 55989)

2e-25

465) fliP
( YP_007381879.1 )

flagellar biosynthesis protein FliP

NC_020163
(Escherichia coli APEC O78)

2e-25

466) fliP
( YP_003499943.1 )

flagellar biosynthetic protein fliP precursor

NC_013941
(Escherichia coli CB9615)

2e-25

467) EcDH1_1700
( YP_006091650.1 )

flagellar biosynthetic protein FliP

NC_017625
(Escherichia coli DH1)

2e-25

468) fliP
( YP_006129289.1 )

flagellar biosynthetic protein fliP precursor

NC_017638
(Escherichia coli DH1)

2e-25

469) fliP
( YP_002329579.1 )

flagellar biosynthesis protein FliP

NC_011601
(Escherichia coli E2348/69)

2e-25

470) fliP
( YP_001463250.1 )

flagellar biosynthesis protein FliP

NC_009801
(Escherichia coli E24377A)

2e-25

471) fliP
( YP_002271065.1 )

flagellar biosynthesis protein FliP

NC_011353
(Escherichia coli EC4115)

2e-25

472) fliP
( YP_002398155.1 )

flagellar biosynthesis protein FliP

NC_011745
(Escherichia coli ED1a)

2e-25

473) fliP
( NP_288409.1 )

flagellar biosynthesis protein FliP

NC_002655
(Escherichia coli EDL933)

2e-25

474) fliP
( YP_003035934.1 )

flagellar biosynthesis protein FliP

NC_012947
(Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG)

2e-25

475) fliP
( YP_002387441.1 )

flagellar biosynthesis protein FliP

NC_011741
(Escherichia coli IAI1)

2e-25

476) fliP
( YP_001730912.1 )

flagellar biosynthesis protein FliP

NC_010473
(Escherichia coli K-12)

2e-25

477) fliP
( YP_002926949.1 )

flagellar biosynthesis protein FliP

NC_012759
(Escherichia coli K-12)

2e-25

478) fliP
( YP_490202.1 )

flagellar biosynthesis protein

NC_007779
(Escherichia coli K-12)

2e-25

479) fliP
( NP_416458.1 )

flagellar biosynthesis protein

NC_000913
(Escherichia coli K12)

2e-25

480) fliP
( YP_006159446.1 )

flagellar biosynthesis protein FliP

NC_017656
(Escherichia coli RM12579)

2e-25

481) fliP
( NP_310714.1 )

flagellar biosynthesis protein FliP

NC_002695
(Escherichia coli Sakai)

2e-25

482) fliP
( YP_001743297.1 )

flagellar biosynthesis protein FliP

NC_010498
(Escherichia coli SMS-3-5)

2e-25

483) fliP
( YP_003078435.1 )

flagellar biosynthesis protein FliP

NC_013008
(Escherichia coli TW14359)

2e-25

484) fliP
( YP_006313351.1 )

flagellar biosynthesis protein FliP

NC_017906
(Escherichia coli Xuzhou21)

2e-25

485) fliP
( YP_453723.1 )

flagellar biosynthesis protein FliP

NC_007712
(Sodalis glossinidius morsitans)

9e-26

486) YE105_C1710
( YP_004297909.1 )

flagellar biosynthesis protein FliP

NC_015224
(Yersinia enterocolitica 105.5R(r))

2e-25

487) fliP
( YP_001006751.1 )

flagellar biosynthesis protein FliP

NC_008800
(Yersinia enterocolitica 8081)

2e-25

488) Y11_14301
( YP_006004929.1 )

flagellar biosynthesis protein FliP

NC_017564
(Yersinia enterocolitica Y11)

2e-25

489) fliP
( YP_001452577.1 )

flagellar biosynthesis protein FliP

NC_009792
(Citrobacter koseri ATCC BAA-895)

2e-25

490) fliP
( YP_002141671.1 )

flagellar biosynthesis protein FliP

NC_011147
(Salmonella enterica AKU12601)

3e-25

491) fliP
( YP_150183.1 )

flagellar biosynthetic protein FliP

NC_006511
(Salmonella enterica ATCC 9150)

3e-25

492) fliP
( YP_001342272.1 )

flagellar biosynthesis protein FliP

NC_009654
(Marinomonas sp. MWYL1)

3e-25

493) fliP
( YP_001173069.1 )

flagellar biosynthetic protein FliP

NC_009434
(Pseudomonas stutzeri A1501)

3e-25

494) fliP
( YP_004714930.1 )

flagellar biosynthesis protein FliP

NC_015740
(Pseudomonas stutzeri ATCC 17588)

3e-25

495) fliP-2
( YP_005939308.1 )

flagellar biosynthesis protein FliP

NC_017532
(Pseudomonas stutzeri DSM 4166)

3e-25

496) fliP
( YP_853001.1 )

flagellar biosynthesis protein FliP

NC_008563
(Escherichia coli APEC O1)

3e-25

497) fliP
( YP_006101245.1 )

flagellar biosynthetic protein FliP

NC_017628
(Escherichia coli IHE3034)

3e-25

498) fliP
( YP_008571879.1 )

Flagellar biosynthetic protein fliP precursor

NC_022370
(Escherichia coli PMV-1)

3e-25

499) fliP
( YP_002391718.1 )

flagellar biosynthesis protein FliP

NC_011742
(Escherichia coli S88)

3e-25

500) fliP
( YP_006110392.1 )

flagellar biosynthesis protein FliP

NC_017632
(Escherichia coli UM146)

3e-25

501) fliP
( YP_541152.1 )

flagellar biosynthesis protein FliP

NC_007946
(Escherichia coli UTI89)

3e-25

502) fliP
( YP_006458384.1 )

flagellar biosynthesis protein FliP

NC_018028
(Pseudomonas stutzeri CCUG 29243)

4e-25

503) Psest_1732
( YP_007239911.1 )

flagellar biosynthetic protein FliP

NC_019936
(Pseudomonas stutzeri RCH2)

4e-25

504) fliP
( YP_001454444.1 )

flagellar biosynthesis protein FliP

NC_009792
(Citrobacter koseri ATCC BAA-895)

5e-25

505) fliP
( YP_005456910.1 )

flagellar biosynthesis protein FliP

NC_016822
(Shigella sonnei 53G)

5e-25

506) fliP
( YP_310907.1 )

flagellar biosynthesis protein FliP

NC_007384
(Shigella sonnei Ss046)

5e-25

507) fliP
( YP_006975941.1 )

flagellar biosynthesis protein FliP

NC_019393
(Alteromonas macleodii AltDE1)

1e-24

508) fliP
( YP_006801984.1 )

flagellar biosynthesis protein FliP

NC_018679
(Alteromonas macleodii Balearic Sea AD45)

1e-24

509) MADE_1005950
( YP_004426330.1 )

flagellar biosynthesis protein FliP

NC_011138
(Alteromonas macleodii Deep ecotype)

1e-24

510) fliP
( YP_008191968.1 )

flagellar biosynthesis protein FliP

NC_021716
(Alteromonas macleodii English Channel 615)

1e-24

511) fliP
( YP_008171083.1 )

flagellar biosynthesis protein FliP

NC_021710
(Alteromonas macleodii Ionian Sea U4)

1e-24

512) fliP
( YP_008195492.1 )

flagellar biosynthesis protein FliP

NC_021717
(Alteromonas macleodii Ionian Sea U7)

1e-24

513) fliP
( YP_008175213.1 )

flagellar biosynthesis protein FliP

NC_021712
(Alteromonas macleodii Ionian Sea U8)

1e-24

514) fliP
( YP_008183049.1 )

flagellar biosynthesis protein FliP

NC_021714
(Alteromonas macleodii Ionian Sea UM4b)

1e-24

515) fliP
( YP_008178996.1 )

flagellar biosynthesis protein FliP

NC_021713
(Alteromonas macleodii Ionian Sea UM7)

1e-24

516) S70_18345
( YP_006218162.1 )

flagellar biosynthesis protein FliP

NC_017731
(Providencia stuartii MRSN 2154)

8e-25

517) fliP
( YP_006762434.1 )

flagellar biosynthesis protein, protein export component FliP

NC_018645
(Desulfobacula toluolica Tol2)

9e-25

518) fliP
( YP_006747081.1 )

flagellar biosynthesis protein FliP

NC_018632
(Alteromonas macleodii ATCC 27126)

2e-24

519) fliP
( YP_006824044.1 )

flagellar biosynthesis protein FliP

NC_018692
(Alteromonas macleodii Black Sea 11)

2e-24

520) fliP
( YP_006798070.1 )

flagellar biosynthesis protein FliP

NC_018678
(Alteromonas macleodii English Channel 673)

2e-24

521) fliP
( YP_004467968.1 )

flagellar biosynthesis protein FliP

NC_015554
(Alteromonas sp. SN2)

2e-24

522) Rahaq2_2559
( YP_005200551.1 )

flagellar biosynthetic protein FliP

NC_016818
(Rahnella aquatilis CIP 78.65)

3e-24

523) fliP
( YP_005402318.1 )

flagellar biosynthesis protein FliP

NC_017047
(Rahnella aquatilis HX2)

3e-24

524) Rahaq_2499
( YP_004213233.1 )

flagellar biosynthetic protein FliP

NC_015061
(Rahnella sp. Y9602)

3e-24

525) fliP
( YP_049816.1 )

flagellar biosynthesis protein FliP

NC_004547
(Pectobacterium atrosepticum SCRI1043)

2e-23

526) fliP
( YP_002316071.1 )

flagellar biosynthesis protein FliP

NC_011567
(Anoxybacillus flavithermus WK1)

2e-23

527) fliP
( YP_004872445.1 )

flagellar biosynthesis protein FliP

NC_016041
(Glaciecola nitratireducens FR1064)

2e-23

528) fliP
( YP_002949252.1 )

flagellar biosynthesis protein FliP

NC_012793
(Geobacillus sp. WCH70)

2e-23

529) W5S_1792
( YP_006282755.1 )

Flagellar biosynthetic protein FliP

NC_017845
(Pectobacterium sp. SCC3193)

3e-23

530) PC1_2585
( YP_003018152.1 )

flagellar biosynthetic protein FliP

NC_012917
(Pectobacterium carotovorum PC1)

4e-23

531) PCC21_026900
( YP_006647346.1 )

flagellar biosynthesis protein FliP

NC_018525
(Pectobacterium carotovorum PCC21)

4e-23

532) fliP
( YP_003259269.1 )

flagellar biosynthesis protein FliP

NC_013421
(Pectobacterium wasabiae WPP163)

4e-23

533) fliP
( NP_243308.1 )

flagellar biosynthesis protein FliP

NC_002570
(Bacillus halodurans C-125)

4e-23

534) fliP
( YP_005934493.1 )

flagellar biosynthetic protein FliP precursor

NC_017531
(Pantoea ananatis AJ13355)

5e-23

535) fliP
( YP_003520600.1 )

FliP

NC_013956
(Pantoea ananatis LMG 20103)

5e-23

536) fliP
( YP_005195227.1 )

flagellar biosynthetic protein FliP

NC_016816
(Pantoea ananatis LMG 5342)

5e-23

537) PAGR_g1736
( YP_005992475.1 )

flagellar biosynthetic protein FliP

NC_017554
(Pantoea ananatis PA13)

5e-23

538) SAR116_0822
( YP_003551149.1 )

flagellar biosynthetic protein FliP

NC_014010
(Candidatus Puniceispirillum marinum IMCC1322)

8e-23

539) fliP
( YP_001697294.1 )

flagellar biosynthesis protein FliP

NC_010382
(Lysinibacillus sphaericus C3-41)

9e-23

540) fliP
( YP_003870273.1 )

flagellar biosynthetic protein fliP

NC_014483
(Paenibacillus polymyxa E681)

1e-22

541) fliP
( YP_005959543.1 )

flagellar biosynthetic protein fliP

NC_017542
(Paenibacillus polymyxa M1)

1e-22

542) PPSC2_c2104
( YP_003946317.1 )

flagellar transport protein FliP

NC_014622
(Paenibacillus polymyxa SC2)

1e-22

543) Halha_0669
( YP_007314735.1 )

flagellar biosynthetic protein FliP

NC_019978
(Halobacteroides halobius DSM 5150)

1e-22

544) fliP
( YP_147087.1 )

flagellar biosynthesis protein FliP

NC_006510
(Geobacillus kaustophilus HTA426)

1e-22

545) fliP
( YP_007401448.1 )

flagellar biosynthetic protein

NC_020210
(Geobacillus sp. GHH01)

1e-22

546) HPL003_18215
( YP_005076608.1 )

flagellar transport protein FliP

NC_016641
(Paenibacillus terrae HPL-003)

9e-23

547) GC56T3_2319
( YP_003671866.1 )

flagellar biosynthetic protein FliP

NC_014206
(Geobacillus sp. C56-T3)

1e-22

548) GYMC52_1141
( YP_004131750.1 )

flagellar biosynthetic protein FliP

NC_014915
(Geobacillus sp. Y412MC52)

1e-22

549) fliP
( YP_003253116.1 )

flagellar biosynthesis protein FliP

NC_013411
(Geobacillus sp. Y412MC61)

1e-22

550) GTCCBUS3UF5_14250
( YP_004981838.1 )

flagellar biosynthetic protein FliP

NC_016593
(Geobacillus thermoleovorans CCB_US3_UF5)

1e-22

551) fliP
( YP_001125208.1 )

flagellar biosynthesis protein FliP

NC_009328
(Geobacillus thermodenitrificans NG80-2)

2e-22

552) Amet_2707
( YP_001320518.1 )

flagellar biosynthetic protein FliP

NC_009633
(Alkaliphilus metalliredigens QYMF)

3e-22

553) fliP
( YP_001601926.1 )

flagellar biosynthesis protein FliP

NC_010125
(Gluconacetobacter diazotrophicus PAl 5)

3e-22

554) fliP
( YP_002277803.1 )

flagellar biosynthesis protein FliP

NC_011365
(Gluconacetobacter diazotrophicus PAl 5)

3e-22

555) fliP
( YP_001232915.1 )

flagellar biosynthesis protein FliP

NC_009483
(Geobacter uraniireducens Rf4)

6e-22

556) fliP
( YP_001953516.1 )

flagellar biosynthesis protein FliP

NC_010814
(Geobacter lovleyi SZ)

7e-22

557) fliP
( YP_007640886.1 )

flagellar biosynthesis protein FliP

NC_020802
(Psychromonas sp. CNPT3)

1e-21

558) Hipma_0871
( YP_004339900.1 )

flagellar biosynthetic protein FliP

NC_015318
(Hippea maritima DSM 10411)

1e-21

559) fliP
( YP_006822033.1 )

flagellar biosynthetic protein

NC_018691
(Alcanivorax dieselolei B5)

2e-21

560) fliP
( YP_007545115.1 )

flagellar biosynthesis protein FliP

NC_020514
(Glaciecola psychrophila 170)

2e-21

561) fliP
( YP_007372210.1 )

flagellar biosynthetic protein FliP

NC_020134
(Clostridium stercorarium DSM 8532)

2e-21

562) fliP
( YP_007678668.1 )

FliP

NC_020887
(Clostridium stercorarium DSM 8532)

2e-21

563) fliP
( YP_007893385.1 )

flagellar biosynthetic protein

NC_021149
(Azotobacter vinelandii CA)

3e-21

564) fliP
( YP_007898434.1 )

flagellar biosynthetic protein

NC_021150
(Azotobacter vinelandii CA6)

3e-21

565) fliP
( YP_002799575.1 )

flagellar biosynthetic protein

NC_012560
(Azotobacter vinelandii DJ)

3e-21

566) fliP
( NP_692492.1 )

flagellar biosynthesis protein FliP

NC_004193
(Oceanobacillus iheyensis HTE831)

4e-21

567) fliP
( YP_004918416.1 )

flagellar biosynthetic protein FliP Precursor

NC_016112
(Methylomicrobium alcaliphilum 20Z)

5e-21

568) B565_1109
( YP_004391761.1 )

flagellar biosynthetic protein FliP

NC_015424
(Aeromonas veronii B565)

5e-21

569) fliP
( NP_902797.1 )

flagellar biosynthesis protein FliP

NC_005085
(Chromobacterium violaceum ATCC 12472)

6e-21

570) Achl_2976
( YP_002489026.1 )

flagellar biosynthetic protein FliP

NC_011886
(Arthrobacter chlorophenolicus A6)

1e-20

571) fliP
( YP_124071.1 )

flagellar biosynthesis protein FliP

NC_006368
(Legionella pneumophila Paris)

1e-20

572) Sgly_0606
( YP_004264970.1 )

flagellar biosynthetic protein FliP

NC_015172
(Syntrophobotulus glycolicus DSM 8271)

9e-21

573) hscR
( YP_003811251.1 )

type III secretory pathway protein

NC_014366
(gamma proteobacterium HdN1)

1e-20

574) STHERM_c09260
( YP_003874146.1 )

hypothetical protein

NC_014484
(Spirochaeta thermophila DSM 6192)

1e-20

575) A11Q_610
( YP_007644437.1 )

flagellar biosynthesis protein FliP

NC_020813
(Bdellovibrio exovorus JSS)

1e-20

576) Acav_4282
( YP_004236733.1 )

flagellar biosynthetic protein FliP

NC_015138
(Acidovorax avenae ATCC 19860)

2e-20

577) fliP
( NP_840547.1 )

flagellar biosynthesis protein FliP

NC_004757
(Nitrosomonas europaea ATCC 19718)

2e-20

578) spaP
( YP_001007698.1 )

surface presentation of antigens protein SpaP

NC_008800
(Yersinia enterocolitica 8081)

2e-20

579) fliP
( YP_008034694.1 )

flagellar biosynthesis protein FliP

NC_021286
(Idiomarina loihiensis GSL 199)

2e-20

580) fliP
( YP_155579.1 )

flagellar biosynthesis protein FliP

NC_006512
(Idiomarina loihiensis L2TR)

2e-20

581) GYMC10_4175
( YP_003244209.1 )

flagellar biosynthetic protein FliP

NC_013406
(Paenibacillus sp. Y412MC10)

2e-20

582) fliP
( YP_562345.1 )

flagellar biosynthesis protein FliP

NC_007954
(Shewanella denitrificans OS217)

2e-20

583) fliP
( YP_741821.1 )

flagellar biosynthesis protein FliP

NC_008340
(Alkalilimnicola ehrlichii MLHE-1)

4e-20

584) fliP
( YP_855914.1 )

flagellar biosynthesis protein FliP

NC_008570
(Aeromonas hydrophila ATCC 7966)

4e-20

585) fliP
( YP_008042621.1 )

flagellar biosynthesis protein FliP

NC_021290
(Aeromonas hydrophila ML09-119)

4e-20

586) Celf_0690
( YP_004452217.1 )

flagellar biosynthetic protein FliP

NC_015514
(Cellulomonas fimi ATCC 484)

4e-20

587) fliP
( YP_006913526.1 )

Flagellar biosynthesis protein FliP

NC_018867
(Dehalobacter sp. CF)

4e-20

588) fliP
( YP_006910537.1 )

Flagellar biosynthesis protein FliP

NC_018866
(Dehalobacter sp. DCA)

4e-20

589) fliP
( YP_001141197.1 )

flagellar biosynthesis protein FliP

NC_009348
(Aeromonas salmonicida A449)

6e-20

590) Desor_4879
( YP_004972795.1 )

flagellar biosynthetic protein FliP

NC_016584
(Desulfosporosinus orientis DSM 765)

7e-20

591) Fbal_1045
( YP_003912328.1 )

flagellar biosynthetic protein FliP

NC_014541
(Ferrimonas balearica DSM 9799)

1e-19

592) fliP
( YP_003516248.1 )

flagellar biosynthesis protein

NC_013949
(Helicobacter mustelae 12198)

1e-19

593) NAL212_0476
( YP_004293583.1 )

flagellar biosynthetic protein FliP

NC_015222
(Nitrosomonas sp. AL212)

1e-19

594) Galf_1059
( YP_003846853.1 )

flagellar biosynthetic protein FliP

NC_014394
(Gallionella capsiferriformans ES-2)

1e-19

595) Desaci_3816
( YP_006468029.1 )

flagellar biosynthetic protein FliP

NC_018068
(Desulfosporosinus acidiphilus SJ4)

2e-19

596) fliP
( YP_005093167.1 )

flagellar biosynthesis protein FliP

NC_016745
(Oceanimonas sp. GK1)

5e-19

597) fliP
( YP_008546098.1 )

flagellar biosynthetic protein FliP

NC_022357
(Sulfuricella denitrificans skB26)

5e-19

598) Thimo_0280
( YP_007242780.1 )

flagellar biosynthetic protein FliP

NC_019940
(Thioflavicoccus mobilis 8321)

8e-19

599) Fbal_2331
( YP_003913608.1 )

flagellar biosynthetic protein FliP

NC_014541
(Ferrimonas balearica DSM 9799)

8e-19

600) fliP
( YP_006919819.1 )

flagellar biosynthetic protein FliP

NC_018870
(Thermacetogenium phaeum DSM 12270)

9e-19

601) swp_5086
( YP_002314288.1 )

Flagellar transport protein FliP

NC_011566
(Shewanella piezotolerans WP3)

1e-18

602) Q7A_2938
( YP_006297360.1 )

flagellar biosynthesis protein FliP

NC_017857
(Methylophaga sp. JAM1)

1e-18

603) Theco_2089
( YP_007213209.1 )

flagellar biosynthetic protein FliP

NC_019897
(Thermobacillus composti KWC4)

1e-18

604) MDS_4752
( YP_004382535.1 )

flagellar biosynthesis protein FliP

NC_015410
(Pseudomonas mendocina NK-01)

1e-18

605) fliP
( YP_001002073.1 )

flagellar biosynthesis protein FliP

NC_008789
(Halorhodospira halophila SL1)

1e-18

606) fliP
( YP_001184990.1 )

flagellar biosynthesis protein FliP

NC_009438
(Shewanella putrefaciens CN-32)

2e-18

607) fliP
( YP_961863.1 )

flagellar biosynthesis protein FliP

NC_008750
(Shewanella sp. W3-18-1)

2e-18

608) fliP
( YP_003619080.1 )

flagellar biosynthetic protein FliP

NC_014125
(Legionella pneumophila 2300/99 Alcoy)

2e-18

609) lp12_1727
( YP_005186088.1 )

flagellar biosynthetic protein FliP

NC_016811
(Legionella pneumophila ATCC 43290)

2e-18

610) fliP
( YP_001250540.1 )

flagellar biosynthesis protein FliP

NC_009494
(Legionella pneumophila Corby)

2e-18

611) LPE509_01400
( YP_007567943.1 )

Flagellar biosynthesis protein FliP

NC_020521
(Legionella pneumophila Philadelphia 1)

2e-18

612) fliP
( YP_095815.1 )

flagellar biosynthesis protein FliP

NC_002942
(Legionella pneumophila Philadelphia 1)

2e-18

613) fliP
( YP_008063475.1 )

flagellar biosynthetic protein FliP

NC_021350
(Legionella pneumophila Thunder Bay)

2e-18

614) fliP
( YP_008104555.1 )

flagellar biosynthesis protein FliP

NC_021499
(Pseudomonas resinovorans NBRC 106553)

2e-18

615) fliP
( YP_006522618.1 )

flagellar biosynthesis protein FliP

NC_018177
(Pseudomonas stutzeri DSM 10701)

2e-18

616) fliP
( YP_001676432.1 )

flagellar biosynthesis protein FliP

NC_010334
(Shewanella halifaxensis HAW-EB4)

2e-18

617) fliP
( YP_006856482.1 )

flagellar biosynthesis protein FliP

NC_018708
(Acidovorax sp. KKS102)

2e-18

618) fliP
( YP_001787969.1 )

flagellar biosynthesis protein FliP

NC_010520
(Clostridium botulinum Loch Maree)

3e-18

619) fliP
( YP_001189901.1 )

flagellar biosynthesis protein FliP

NC_009439
(Pseudomonas mendocina ymp)

3e-18

620) Desmer_3905
( YP_006623612.1 )

flagellar biosynthetic protein FliP

NC_018515
(Desulfosporosinus meridiei DSM 13257)

3e-18

621) fliP
( YP_001499953.1 )

flagellar biosynthesis protein FliP

NC_009901
(Shewanella pealeana ATCC 700345)

3e-18

622) Sbal175_0426
( YP_006019027.1 )

flagellar biosynthetic protein FliP

NC_017571
(Shewanella baltica BA175)

4e-18

623) BN865_13040
( YP_008473941.1 )

Flagellar biosynthesis protein FliP

NC_022132
(Campylobacter coli 76339)

4e-18

624) fliP
( YP_008533662.1 )

flagellar biosynthesis protein FliP

NC_022347
(Campylobacter coli CVM N29710)

4e-18

625) fliP
( YP_436281.1 )

flagellar biosynthesis protein FliP

NC_007645
(Hahella chejuensis KCTC 2396)

4e-18

626) fliP
( YP_002863640.1 )

flagellar biosynthesis protein FliP

NC_012658
(Clostridium botulinum 657)

4e-18

627) fliP
( YP_001384893.1 )

flagellar biosynthesis protein FliP

NC_009697
(Clostridium botulinum ATCC 19397)

4e-18

628) fliP
( YP_001255147.1 )

flagellar biosynthesis protein FliP

NC_009495
(Clostridium botulinum ATCC 3502)

4e-18

629) fliP
( YP_001388362.1 )

flagellar biosynthesis protein FliP

NC_009698
(Clostridium botulinum Hall)

4e-18

630) fliP
( YP_002805152.1 )

flagellar biosynthesis protein FliP

NC_012563
(Clostridium botulinum Kyoto)

4e-18

631) Sbal117_4142
( YP_006039292.1 )

flagellar biosynthetic protein FliP

NC_017579
(Shewanella baltica OS117)

4e-18

632) fliP
( YP_001052321.1 )

flagellar biosynthesis protein FliP

NC_009052
(Shewanella baltica OS155)

4e-18

633) H04402_02743
( YP_005679281.1 )

flagellar biosynthesis protein FliP

NC_017299
(Clostridium botulinum H04402 065)

5e-18

634) fliP
( YP_001782265.1 )

flagellar biosynthesis protein FliP

NC_010516
(Clostridium botulinum Okra)

6e-18

635) fliP
( YP_564662.1 )

flagellar biosynthesis protein FliP

NC_007954
(Shewanella denitrificans OS217)

6e-18

636) fliP
( YP_001471824.1 )

flagellar biosynthesis protein FliP

NC_009831
(Shewanella sediminis HAW-EB3)

7e-18

637) fliP
( YP_005675545.1 )

flagellar biosynthetic protein FliP

NC_017297
(Clostridium botulinum 230613)

1e-17

638) fliP
( YP_001391949.1 )

flagellar biosynthesis protein FliP

NC_009699
(Clostridium botulinum Langeland)

1e-17

639) BN341_p1310
( YP_007043253.1 )

Flagellar biosynthesis protein FliP

NC_019674
(Helicobacter heilmannii ASB1.4)

1e-17

640) fliP
( YP_617964.1 )

flagellar biosynthesis protein FliP

NC_008048
(Sphingopyxis alaskensis RB2256)

2e-17

641) fliP
( YP_001534601.1 )

flagellar biosynthesis protein FliP

NC_009952
(Dinoroseobacter shibae DFL 12)

2e-17

642) Metme_4070
( YP_004514922.1 )

flagellar biosynthetic protein FliP

NC_015572
(Methylomonas methanica MC09)

2e-17

643) fliP
( YP_001398263.1 )

flagellar biosynthesis protein FliP

NC_009707
(Campylobacter jejuni 269.97)

2e-17

644) ICDCCJ07001_789
( YP_004066342.1 )

flagellar biosynthesis protein

NC_014802
(Campylobacter jejuni ICDCCJ07001)

3e-17

645) fliP
( YP_008540417.1 )

flagellar biosynthesis protein FliP

NC_022352
(jejuni jejuni 00-2426)

3e-17

646) M635_08385
( YP_008294568.1 )

flagellar biosynthesis protein FliP

NC_021834
(Campylobacter jejuni 32488)

4e-17

647) fliP
( YP_001000505.1 )

flagellar biosynthesis protein FliP

NC_008787
(Campylobacter jejuni 81-176)

4e-17

648) fliP
( YP_001482343.1 )

flagellar biosynthesis protein FliP

NC_009839
(Campylobacter jejuni 81116)

4e-17

649) fliP
( YP_005656134.1 )

flagellar biosynthetic protein FliP

NC_017279
(Campylobacter jejuni IA3902)

4e-17

650) fliP
( YP_005657749.1 )

Flagellar biosynthetic protein FliP

NC_017280
(Campylobacter jejuni M1)

4e-17

651) fliP
( YP_002344227.1 )

flagellar biosynthesis protein FliP

NC_002163
(Campylobacter jejuni NCTC 11168)

4e-17

652) fliP
( YP_006632976.1 )

flagellar biosynthesis protein FliP

NC_018521
(Campylobacter jejuni NCTC 11168-BN148)

4e-17

653) fliP
( YP_006857870.1 )

flagellar biosynthesis protein FliP

NC_018709
(Campylobacter jejuni PT14)

4e-17

654) fliP
( YP_178909.1 )

flagellar biosynthesis protein FliP

NC_003912
(Campylobacter jejuni RM1221)

4e-17

655) fliP
( YP_005659435.1 )

Flagellar biosynthesis protein fliP

NC_017281
(Campylobacter jejuni S3)

4e-17

656) fliP
( YP_008562164.1 )

flagellar biosynthesis protein FliP

NC_022362
(jejuni jejuni 00-2425)

4e-17

657) fliP
( YP_008538743.1 )

flagellar biosynthesis protein FliP

NC_022351
(jejuni jejuni 00-2538)

4e-17

658) fliP
( YP_008542141.1 )

flagellar biosynthesis protein FliP

NC_022353
(jejuni jejuni 00-2544)

4e-17

659) Afer_0155
( YP_003108797.1 )

flagellar biosynthetic protein FliP

NC_013124
(Acidimicrobium ferrooxidans DSM 10331)

4e-17

660) fliP
( YP_006557355.1 )

flagellar biosynthetic protein fliP

NC_018268
(Marinobacter sp. BSs20148)

1e-16

661) fliP
( YP_921955.1 )

flagellar biosynthesis protein FliP

NC_008699
(Nocardioides sp. JS614)

2e-16

662) fliP
( YP_001680806.1 )

flagellar biosynthetic protein flip

NC_010337
(Heliobacterium modesticaldum Ice1)

2e-16

663) fliP
( YP_959252.1 )

flagellar biosynthesis protein FliP

NC_008740
(Marinobacter aquaeolei VT8)

3e-16

664) fliP
( YP_005429221.1 )

flagellar biosynthesis protein

NC_017067
(Marinobacter hydrocarbonoclasticus ATCC 49840)

3e-16

665) spaP
( YP_001569178.1 )

surface presentation of antigens protein SpaP

NC_010067
(Salmonella enterica RSK2980)

9e-16

666) fliP
( YP_001093504.1 )

flagellar biosynthesis protein FliP

NC_009092
(Shewanella loihica PV-4)

5e-15

667) Sput200_2731
( YP_006010601.1 )

flagellar biosynthetic protein FliP

NC_017566
(Shewanella putrefaciens 200)

7e-15

668) fliP
( YP_001184086.1 )

flagellar biosynthesis protein FliP

NC_009438
(Shewanella putrefaciens CN-32)

7e-15

669) fliP
( YP_962834.1 )

flagellar biosynthesis protein FliP

NC_008750
(Shewanella sp. W3-18-1)

7e-15

670) fliP
( NP_718773.2 )

flagellar export protein FliP

NC_004347
(Shewanella oneidensis MR-1)

1e-14

671) fliP
( YP_868992.1 )

flagellar biosynthesis protein FliP

NC_008577
(Shewanella sp. ANA-3)

1e-14

672) fliP
( YP_737415.1 )

flagellar biosynthesis protein FliP

NC_008322
(Shewanella sp. MR-7)

1e-14

673) fliP
( YP_733428.1 )

flagellar biosynthesis protein FliP

NC_008321
(Shewanella sp. MR-4)

1e-14

674) fliP
( YP_749883.1 )

flagellar biosynthesis protein FliP

NC_008345
(Shewanella frigidimarina NCIMB 400)

2e-14

675) fliP
( YP_003810708.1 )

flagellar transport protein FliP

NC_014366
(gamma proteobacterium HdN1)

2e-14

676) Mrad2831_5050
( YP_001757691.1 )

flagellar biosynthetic protein FliP

NC_010505
(Methylobacterium radiotolerans JCM 2831)

2e-14

677) Sbal117_3054
( YP_006038236.1 )

flagellar biosynthetic protein FliP

NC_017579
(Shewanella baltica OS117)

1e-13

678) fliP
( YP_001051267.1 )

flagellar biosynthesis protein FliP

NC_009052
(Shewanella baltica OS155)

1e-13

679) fliP
( YP_001367123.1 )

flagellar biosynthesis protein FliP

NC_009665
(Shewanella baltica OS185)

1e-13

680) fliP
( YP_001555483.1 )

flagellar biosynthesis protein FliP

NC_009997
(Shewanella baltica OS195)

1e-13

681) fliP
( YP_002357377.1 )

flagellar biosynthesis protein FliP

NC_011663
(Shewanella baltica OS223)

1e-13

682) Sbal678_3069
( YP_005274268.1 )

flagellar biosynthetic protein FliP

NC_016901
(Shewanella baltica OS678)

1e-13

683) fliP
( YP_003556191.1 )

flagellar biosynthetic protein FliP

NC_014012
(Shewanella violacea DSS12)

1e-13

684) Sbal175_1440
( YP_006020023.1 )

flagellar biosynthetic protein FliP

NC_017571
(Shewanella baltica BA175)

1e-13

685) Calni_1332
( YP_004051403.1 )

flagellar biosynthetic protein flip

NC_014758
(Calditerrivibrio nitroreducens DSM 19672)

3e-12

686) TK90_1168
( YP_003460413.1 )

flagellar biosynthetic protein FliP

NC_013889
(Thioalkalivibrio sp. K90mix)

1e-11

687) fliP
( YP_127091.1 )

flagellar biosynthesis protein FliP

NC_006369
(Legionella pneumophila Lens)

2e-11

688) fliP
( YP_006505781.1 )

flagellar biosynthesis protein

NC_018139
(Legionella pneumophila Lorraine)

2e-11

689) fliP
( YP_005847500.1 )

flagellar biosynthetic protein FliP

NC_017464
(Ignavibacterium album JCM 16511)

3e-11

690) fliP
( YP_006509053.1 )

flagellar biosynthesis protein

NC_018140
(Legionella pneumophila HL06041035)

3e-11

691) EUBELI_00826
( YP_002930281.1 )

triacylglycerol lipase

NC_012778
(Eubacterium eligens ATCC 27750)

3e-11

692) MROS_2143
( YP_006528386.1 )

flagellar biosynthetic protein FliP

NC_018178
(Melioribacter roseus P3M-2)

9e-11

693) fliP
( YP_934229.1 )

flagellar biosynthesis protein FliP

NC_008702
(Azoarcus sp. BH72)

3e-10

694) Thivi_0368
( YP_006412562.1 )

flagellar biosynthetic protein FliP

NC_018012
(Thiocystis violascens DSM 198)

7e-10

695) Q7C_1257
( YP_006293094.1 )

flagellar biosynthesis protein FliP

NC_017856
(Methylophaga sp. JAM7)

8e-09

696) Alvin_2932
( YP_003444867.1 )

flagellar biosynthetic protein FliP

NC_013851
(Allochromatium vinosum DSM 180)

1e-08

697) Dsui_1746
( YP_005027972.1 )

flagellar biosynthetic protein FliP

NC_016616
(Dechlorosoma suillum PS)

3e-08

698) Anae109_0745
( YP_001377942.1 )

type III secretion system protein

NC_009675
(Anaeromyxobacter sp. Fw109-5)

5e-08

699) R2APBS1_2987
( YP_007591297.1 )

flagellar biosynthetic protein FliP

NC_020541
(Rhodanobacter sp. 2APBS1)

2e-07

• Sequence Alignments

1) Marme_1071 in NC_015276


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  261 bits (974),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 133/193 (69%), Positives = 179/193 (93%), Gaps = 0/193 (0%)

Query  25   LIVCSAFLKISMVLMITRNAMGVQQVPPNMAIYGIALAATMFVMAPVFSDIGNKVKETPP  84
            +I+C+AFLKI+MVL+ITRNA+GVQQ PPNMA+YGIALAAT+F+MAPVFS++G++VK  P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DFSSLEGMQTSANKIVGPLQAFMSRNSNPDVTTHMMDNTARLWPKEMASKVTKDDLMIVI  144
            ++ ++ +M+++++ +V PL++FM+RN +PD+ TH+++NT R+WPKEMA K ++DDL++V+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PSFMLSELKAGLQIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPLKILLFVLVDG  204
            P+F+LSEL+AG+QIGFLIYIPFIVIDLIVSN+LLALGMQMV+PMTISLPLKILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WGRLLDGLFYTYI  217
            W RLLDGLFY+Y+
Sbjct  181  WTRLLDGLFYSYM  193

2) hrcR in NC_010694


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  256 bits (955),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 142/193 (74%), Positives = 170/193 (89%), Gaps = 0/193 (0%)

Query  25   MIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFNQMQQQFSQSPA  84
            MI+CT FLKI+MVLLITRNAIGVQQ PPNMALYGIALAATLF+MAPVF++M ++  + P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DLSSMDSLKNSVTHGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSVSKDNLLLVI  144
            +L +  ++ ++  H V PL+ FMT+N DPDI  HL EN+ RMWPKEM+D  S+D+LLLV+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFVLING  204
            PAFVLSELQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMVAPMT+SLPLK+LLFVL++G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WTRLLDGLFYSYL  217
            WTRLLDGLFYSY+
Sbjct  181  WTRLLDGLFYSYM  193

3) hrcR in NC_013971


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  255 bits (952),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 140/193 (73%), Positives = 170/193 (89%), Gaps = 0/193 (0%)

Query  25   MIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFNQMQQQFSQVPA  84
            MI+CT FLKI+MVLLITRNAIGVQQ PPNMALYGIALAATLF+MAPVF++M ++  ++P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DLSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSVNKDNLLLVI  144
            +L +   + ++  + V PL+ FMT+N DPDI  HL EN+ RMWPKEM+D  ++D+LLLV+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFVLING  204
            PAFVLSELQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMVAPMT+SLPLK+LLFVL++G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WTRLLDGLFYSYL  217
            WTRLLDGLFYSY+
Sbjct  181  WTRLLDGLFYSYM  193

4) hcrR in NC_013961


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  255 bits (952),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 140/193 (73%), Positives = 170/193 (89%), Gaps = 0/193 (0%)

Query  25   MIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFNQMQQQFSQVPA  84
            MI+CT FLKI+MVLLITRNAIGVQQ PPNMALYGIALAATLF+MAPVF++M ++  ++P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DLSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSVNKDNLLLVI  144
            +L +   + ++  + V PL+ FMT+N DPDI  HL EN+ RMWPKEM+D  ++D+LLLV+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFVLING  204
            PAFVLSELQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMVAPMT+SLPLK+LLFVL++G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WTRLLDGLFYSYL  217
            WTRLLDGLFYSY+
Sbjct  181  WTRLLDGLFYSYM  193

5) hrcR in NC_017445


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  255 bits (954),  Expect = 9e-70, Method: Compositional matrix adjust.
 Identities = 141/193 (74%), Positives = 170/193 (89%), Gaps = 0/193 (0%)

Query  25   MIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFNQMQQQFSQVPA  84
            MI+CT FLKI+MVLLITRNAIGVQQ PPNMALYGIALAATLF+MAPVF++M ++  ++P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DLSSMDNLKTSVSNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSVSKDNLLLVI  144
            +L +   + ++  + V PL+ FMT+N DPDI  HL EN+ RMWPKEM+D  S+D+LLLV+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFVLING  204
            PAFVLSELQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMVAPMT+SLPLK+LLFVL++G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WTRLLDGLFYSYL  217
            WTRLLDGLFYSY+
Sbjct  181  WTRLLDGLFYSYM  193

6) hcrR in NC_017390


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  255 bits (954),  Expect = 9e-70, Method: Compositional matrix adjust.
 Identities = 141/193 (74%), Positives = 170/193 (89%), Gaps = 0/193 (0%)

Query  25   MIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFNQMQQQFSQVPA  84
            MI+CT FLKI+MVLLITRNAIGVQQ PPNMALYGIALAATLF+MAPVF++M ++  ++P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DLSSMDNLKTSVSNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSVSKDNLLLVI  144
            +L +   + ++  + V PL+ FMT+N DPDI  HL EN+ RMWPKEM+D  S+D+LLLV+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFVLING  204
            PAFVLSELQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMVAPMT+SLPLK+LLFVL++G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WTRLLDGLFYSYL  217
            WTRLLDGLFYSY+
Sbjct  181  WTRLLDGLFYSYM  193

7) hrcR in NC_012214


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  255 bits (954),  Expect = 9e-70, Method: Compositional matrix adjust.
 Identities = 141/193 (74%), Positives = 170/193 (89%), Gaps = 0/193 (0%)

Query  25   MIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFNQMQQQFSQVPA  84
            MI+CT FLKI+MVLLITRNAIGVQQ PPNMALYGIALAATLF+MAPVF++M ++  ++P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DLSSMDNLKTSVSNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSVSKDNLLLVI  144
            +L +   + ++  + V PL+ FMT+N DPDI  HL EN+ RMWPKEM+D  S+D+LLLV+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFVLING  204
            PAFVLSELQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMVAPMT+SLPLK+LLFVL++G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WTRLLDGLFYSYL  217
            WTRLLDGLFYSY+
Sbjct  181  WTRLLDGLFYSYM  193

8) D781_3938 in NC_020064


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  245 bits (913),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 137/193 (71%), Positives = 167/193 (87%), Gaps = 0/193 (0%)

Query  25   MIVCTCFLKISMVLLLTRNAMGVQQVPPNMALYGIALAATLFVMAPVFNDMSQRLKAMPL  84
            MI+CT FLKI+MVLL+TRNA+GVQQ PPNMALYGIALAATLF+MAPVF++M++R+K +P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DFSNMERLEYTFGNGAEPLKAFMTRNTDPDILTHLQENGARMWPKEMAQSLTPQSPLLVI  144
            ++     +E +  +  EPL++FMTRN DPDI THL EN  RMWPKEMA+  + +  LLV+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFVLSELQNGFKIGFLIFIPFLVMDLIVSNVLLALGMQMVSPMTVSLPLKILLFVLVSG  204
            PAFVLSELQ GF+IGFLI+IPF+V+DLIVSN+LLALGMQMV+PMT+SLPLKILLFVLV G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WTRLLDGLFYSYL  217
            WTRLLDGLFYSY+
Sbjct  181  WTRLLDGLFYSYM  193

9) hrcR in NC_004578


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  244 bits (910),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 144/193 (75%), Positives = 174/193 (91%), Gaps = 0/193 (0%)

Query  8    LIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHEMQQRVHDHPL  67
            +I+CTAFLKIAM LLITRNAIGVQQ PPNMALYGIALAAT+F+MAPV  EM +RV   P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  68   ELGNTEKLQASARTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEMADQASKNDLLLAI  127
            +L+    ++++++ V+EPL+ FMTRN DPD+ +HLL+NTQRMWPKEMAD+AS++DLLL +
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  128  PAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTlslplklllFVMVSG  187
            PAFVLSELQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMV+PMT+SLPLK+LLFV+V G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  188  WSRLLDSLFYSYM  200
            W+RLLD+LFYSYM
Sbjct  181  WTRLLDGLFYSYM  193

10) PSEBR_a5382 in NC_015379


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  244 bits (911),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 138/193 (72%), Positives = 176/193 (92%), Gaps = 0/193 (0%)

Query  25   LIICSAFLKIAIVLTITRNAIGVQQVPPNMALYAIALAATLFIMAPVGHNIAEQVKERPL  84
            +IIC+AFLKIA+VL ITRNAIGVQQ PPNMALY+IALAATLFIMAPV  +++++VK  P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DFSNTEALQGSALNAIKPLQAFMSRNTNPDILAHLLENTQRMWPKERAEQASRDDLMLLI  144
            ++    A+++++ + + PL++FM+RN +PDI +HLLENTQRMWPKE A++ASRDDL+L++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFMLSELEAGFQMGFLIYIPFIVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQG  204
            PAF+LSEL+AGFQ+GFLIYIPFIVIDLIVSN+LLALGMQMVAPMTISLPLK+L+FVLV+G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WTQLLDSLFYSYL  217
            WT+LLD+LFYSY+
Sbjct  181  WTRLLDGLFYSYM  193

11) hrcR in NC_016830


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  243 bits (906),  Expect = 5e-66, Method: Compositional matrix adjust.
 Identities = 137/193 (71%), Positives = 176/193 (92%), Gaps = 0/193 (0%)

Query  25   LIICSAFLKIAIVLTITRNAIGVQQVPPNMALYAIALAATLFIMAPVGHNIAEQLKERPL  84
            +IIC+AFLKIA+VL ITRNAIGVQQ PPNMALY+IALAATLFIMAPV  ++++++K  P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DFSNTEALQGSALNAIKPLQAFMSRNTNPDILAHLLENTQRMWPKERAEQASRDDLMLLI  144
            ++    A+++++ + + PL++FM+RN +PDI +HLLENTQRMWPKE A++ASRDDL+L++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFMLSELEAGFQMGFLIYIPFIVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQG  204
            PAF+LSEL+AGFQ+GFLIYIPFIVIDLIVSN+LLALGMQMVAPMTISLPLK+L+FVLV+G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WTQLLDSLFYSYL  217
            WT+LLD+LFYSY+
Sbjct  181  WTRLLDGLFYSYM  193

12) rscR in NC_012660


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  238 bits (887),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 130/193 (68%), Positives = 168/193 (88%), Gaps = 0/193 (0%)

Query  25   LVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALATTLFIMAPVGYEIAESVKALPL  84
            +++CTAFLKI +VL+ITRNAIGVQQ PP+MA+ GIALA+TLFIMAPV  E+++ VK LP 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DLSNVQTLLQTANEAIKPLRAFMLRNIDPDVLTHLLENTARLWPAQMAQEVQREDLILLI  144
            +L    ++  ++++ + PLR+FM RN+DPD+ THLLENT R+WP +MA+   R+DL+L++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSG  204
            PAFVLS+LQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMV+PMTISLPLK+LLFV+V G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WSRLLDSLFLSYL  217
            W+RLLD+LF SY+
Sbjct  181  WTRLLDGLFYSYM  193

13) Pmen_0046 in NC_009439


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  235 bits (878),  Expect = 9e-64, Method: Compositional matrix adjust.
 Identities = 142/193 (74%), Positives = 173/193 (90%), Gaps = 0/193 (0%)

Query  25   LIVCTAFLKIAMTLMITRNAIGVQQVPPNMAIYGIALAATMFVMAPVAYEIQNRLSDNPL  84
            +I+CTAFLKIAM L+ITRNAIGVQQ PPNMA+YGIALAAT+F+MAPV  E+ +R+   P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DLSSTDSLQASAGNVVEPLQDFMVNNTDPDIATHLLENTQRMWPREMSEKASKSDLLLAI  144
            +L +  ++++++ +VVEPL+ FM  N DPDI THLLENTQRMWP+EM++KAS+ DLLL +
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFVLSELQAAFQIGFLIYIPFIVIDLIISNLLLALGMQMVSPMTISlplklllfvlVDG  204
            PAFVLSELQA+FQIGFLIYIPFIVIDLI+SN+LLALGMQMV+PMTISLPLK+LLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WTRLLNSLFYSYM  217
            WTRLL++LFYSYM
Sbjct  181  WTRLLDGLFYSYM  193

14) HrcR in NC_007005


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  234 bits (874),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 147/193 (77%), Positives = 172/193 (90%), Gaps = 0/193 (0%)

Query  25   LIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQRVHEHPL  84
            +I+CTAFLKIAM LLITRNAIGVQQ PPNMALYGIALAAT+F+MAPV  ++ +RV   P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   ELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKEMADQASKDDLLLAI  144
            +L     ++S+ K V+EPL+ FMTRN DPD+ +HLLENTQRMWPKEMAD+AS+DDLLL +
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTlslplklllfvlVSG  204
            PAFVLSELQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMV+PMT+SLPLK+LLFVLV G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WSRLLDSLFYSYM  217
            W+RLLD+LFYSYM
Sbjct  181  WTRLLDGLFYSYM  193

15) hrcR in NC_005773


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  234 bits (874),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 146/193 (76%), Positives = 174/193 (91%), Gaps = 0/193 (0%)

Query  23   LIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHEIQQRVHEHPL  82
            +I+CTAFLKIAM LLITRNAIGVQQ PPNMALYGIALAAT+F+MAPV  E+ +RV   P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  83   ELGSADKLQSSLKTVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKEMADQANKNDLLLAI  142
            +L++   ++S+ K V+EPL+ FMTRN DPD+ +HLLENTQRMWPKEMAD+A+++DLLL +
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  143  PAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTlslplklllfvlVSG  202
            PAFVLSELQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMV+PMT+SLPLK+LLFVLV G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  203  WSRLLDSLFYSYM  215
            W+RLLD+LFYSYM
Sbjct  181  WTRLLDGLFYSYM  193

16) H045_00190 in NC_020209


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  230 bits (858),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 127/193 (66%), Positives = 167/193 (87%), Gaps = 0/193 (0%)

Query  25   LVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFVMAPVGYQIAENLKTSPL  84
            +++CTAFLKI +VL+ITRNAIGVQQ PP+MA+ GIALAATLF+MAPV  ++++ +K  P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DMSNVQTLQATGLVAIQPLRTFMTRNTDPDVLTHLQENSARMWPPEMAQSTQREDWVLLI  144
            ++    +++++G   ++PLRTFMTRN DPD+ THL EN+ RMWP EMA+ + R+D +L++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFVVSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSG  204
            PAFV+S+LQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMV+PMTISLPLK+LLFV+V G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WSRLLDSLFLSYL  217
            W+RLLD+LF SY+
Sbjct  181  WTRLLDGLFYSYM  193

17) PC1_2212 in NC_012917


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  228 bits (848),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 138/193 (72%), Positives = 173/193 (90%), Gaps = 0/193 (0%)

Query  25   MIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFQDISKRVQEKPL  84
            MI+CT FLKIA+VLLITRNAIGVQQ PPNMALYGIALAATLF+MAPVF +++ RV+  P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLSEKVNTQNLLLVI  144
            ++  +++++++    +EPL+TFM+RN+DPDI THL EN+ +MWP  +++K + ++LLLV+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTlslplklllfvlVNG  204
            PAFVLSELQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMVAPMT+SLPLK+LLFVLV+G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WTRLLDGLFYSYL  217
            WTRLLDGLFYSY+
Sbjct  181  WTRLLDGLFYSYM  193

18) PCC21_022910 in NC_018525


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  228 bits (848),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 138/193 (72%), Positives = 173/193 (90%), Gaps = 0/193 (0%)

Query  25   MIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFQDISKRVQEKPL  84
            MI+CT FLKIA+VLLITRNAIGVQQ PPNMALYGIALAATLF+MAPVF +++ RV+  P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLSEKVNTQNLLLVI  144
            ++  +++++++    +EPL+TFM+RN+DPDI THL EN+ +MWP  +++K + ++LLLV+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTlslplklllfvlVNG  204
            PAFVLSELQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMVAPMT+SLPLK+LLFVLV+G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WTRLLDGLFYSYL  217
            WTRLLDGLFYSY+
Sbjct  181  WTRLLDGLFYSYM  193

19) hrcR in NC_004547


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  227 bits (845),  Expect = 4e-61, Method: Compositional matrix adjust.
 Identities = 137/193 (71%), Positives = 173/193 (90%), Gaps = 0/193 (0%)

Query  25   MIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVFQDISKRVQEKPL  84
            MI+CT FLKIA+VLLITRNAIGVQQ PPNMALYGIALAAT+F+MAPVF +++ RV+  P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLSEKVNTQNLLLVI  144
            ++  +++++++    +EPL+TFM+RN+DPDI THL EN+ +MWP  +++K + ++LLLV+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTlslplklllfvlVNG  204
            PAFVLSELQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMVAPMT+SLPLK+LLFVLV+G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WTRLLDGLFYSYL  217
            WTRLLDGLFYSY+
Sbjct  181  WTRLLDGLFYSYM  193

20) hrcR in NC_014500


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  225 bits (837),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 137/193 (71%), Positives = 170/193 (89%), Gaps = 0/193 (0%)

Query  25   MIVCTCFLKVSMVLMITRNAIGVQQVPPNMALYGIALAATLFVMAPVFSDIKQRFQDAPV  84
            MI+CT FLK++MVL+ITRNAIGVQQ PPNMALYGIALAATLF+MAPVFS++ +R +  P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DFSSLDALESSVTKGIEPLQKFMSRNTDPDILTHLHENSLRMWPASMSEKITTQNILLVL  144
            ++ ++ A+ES+    +EPL+ FM+RN DPDI THL EN+ RMWP  M++K + +++LLV+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTlslplklllfvlVNG  204
            PA+VLSELQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMVAP T+SLPLK+LLFVLV+G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WTRLLDGLFYSYL  217
            WTRLLDGLFYSY+
Sbjct  181  WTRLLDGLFYSYM  193

21) Dd1591_1885 in NC_012912


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  225 bits (837),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 137/193 (71%), Positives = 169/193 (88%), Gaps = 0/193 (0%)

Query  25   MIVCTCFLKISMVLMITRNAIGVQQVPPNMALYGIALAATVFVMAPVFSDIKQRFQDAPV  84
            MI+CT FLKI+MVL+ITRNAIGVQQ PPNMALYGIALAAT+F+MAPVFS++ +R +  P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DFSNLDALESSVTRGIEPLQKFMSRNTDPDILTHLHENSLRMWPAAMSEKITTQSILLIV  144
            ++  + A+ES+  + +EPL+ FM+RN DPDI THL EN+ RMWP  M++K + + +LL+V
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTlslplklllfvlVNG  204
            PA+VLSELQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMVAP T+SLPLK+LLFVLV+G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WTRLLDGLFYSYL  217
            WTRLLDGLFYSY+
Sbjct  181  WTRLLDGLFYSYM  193

22) Dd586_1882 in NC_013592


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  221 bits (824),  Expect = 2e-59, Method: Compositional matrix adjust.
 Identities = 135/193 (70%), Positives = 170/193 (89%), Gaps = 0/193 (0%)

Query  25   MIVCTCFLKISMVLMLTRNAIGVQQVPPNMALYGVALAATLFVMAPVFSDIKLRFQDAPV  84
            MI+CT FLKI+MVL++TRNAIGVQQ PPNMALYG+ALAATLF+MAPVFS++  R +  P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DFSSLDALESSVTRGIEPLQKFMSRNTDPDILTHLHENSLRMWPAAMTEKITTQNILLIL  144
            ++ ++ A+ES+  + +EPL+ FM+RN DPDI THL EN+ RMWP  M++K + +++LL++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTlslplklllfvlVNG  204
            PA+VLSELQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMVAP T+SLPLK+LLFVLV+G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WTRLLDGLFYSYL  217
            WTRLLDGLFYSY+
Sbjct  181  WTRLLDGLFYSYM  193

23) Ser39006_2919 in NC_022268


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  220 bits (820),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 133/193 (69%), Positives = 169/193 (88%), Gaps = 0/193 (0%)

Query  25   MIVCTCFLKIAMVLIITRNAIGVQQVPPNMALYGIALASTLFIMAPVFNDIRQQFQDTPL  84
            MI+CT FLKIAMVL+ITRNAIGVQQ PPNMALYGIALA+TLFIMAPVF+++ ++ +  P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DLNSIETLETTLGSGITPLQKFMSRNSDPDILVHLHENSIRMWPASMSEKVNTQNILLVI  144
            +L+++ ++E++    + PL+ FM+RN DPDI  HL EN+ RMWP  M++K + +++LLV+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFVLSELQAGFKIGFLVYIPFIVIDLIVSNVLLALGMQMVAPTTlslplklllfilVNG  204
            PAFVLSELQAGF+IGFL+YIPFIVIDLIVSN+LLALGMQMVAP T+SLPLK+LLF+LV+G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WTRLLDGLFYSYL  217
            WTRLLDGLFYSY+
Sbjct  181  WTRLLDGLFYSYM  193

24) rscR in NC_017911


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  213 bits (794),  Expect = 4e-57, Method: Compositional matrix adjust.
 Identities = 131/193 (68%), Positives = 167/193 (87%), Gaps = 0/193 (0%)

Query  25   LVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFIMAPVGYEIAENLKASPL  84
            +++CTAFLKI +VL+ITRNAIGVQQ PP+MA+ GIALAATLFIMAPV  E+++ +K  P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   DMTNVQTFLSTGNEAINPLRAFMLRNVDPDVLTHLLENTARLWPAKMAQEVQREDLILLI  144
            ++    +  S+G++ ++PLR+FM RN+DPD+ THLLENT R+WP  MA+   R+DL+L++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISlplklllfvlVSG  204
            PAFVLS+LQAGF+IGFLIYIPFIVIDLIVSN+LLALGMQMV+PMTISLPLK+LLFVLV G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WSRLLDSLFLSYL  217
            W+RLLD+LF SY+
Sbjct  181  WTRLLDGLFYSYM  193

25) H650_14845 in NC_021500


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  213 bits (791),  Expect = 6e-57, Method: Compositional matrix adjust.
 Identities = 111/194 (58%), Positives = 162/194 (84%), Gaps = 2/194 (1%)

Query  25   MIISTSFLKISVVLLIVRNALGIQQVPGNMVIYSISLAATLFIMGPVFNDMTQRVRQISP  84
            MII T+FLKI++VLLI RNA+G+QQ P NM +Y+I+LAATLFIM+PVF++M +RV+++ P
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKL-P  59

Query  85   DKIDV-AAIYAHYPTVIAPLQNFLQRNIDADTHVRLTEAAKKLWKDQANNPITRDNPALI  143
            + +D  AA+ +    V+ PL+ F+ RN+D+D + +L E ++++W  +  +  +RD+  L+
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  144  LSAFVLSELQSGFKIGFLIYIPFLVIDLVVSTVLMALGMQMVAPMFIAIPLKLLLFVLIE  203
            ++AFVLSELQ+GF+IGFLIYIPF+VIDL+VS +L+ALGMQMVAPM I++PLK+LLFVL++
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  204  GWSRLLEGLFYSYI  217
            GW+RLL+GLFYSY+
Sbjct  180  GWTRLLDGLFYSYM  193

26) hrcR in NC_014323


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  176 bits (651),  Expect = 7e-46, Method: Compositional matrix adjust.
 Identities = 100/194 (52%), Positives = 148/194 (77%), Gaps = 5/194 (2%)

Query  28   TTSFLKISLVLLVLRNAIGVQQVPPTLAIYGIALALSVFIMAPTVQEVGKRAMAVDVSHP  87
             T+FLKI++VLL+ RNAIGVQQ PP +A+YGIALA ++FIMAP   E+G R   +    P
Sbjct  4    CTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKL----P  59

Query  88   AASRTVPILERA-QDAFDPLRKFMLKMSHAEQREMFLASAKKLWPKEAAKDAQPTDALIL  146
                T + +E A ++  +PLR FM +  +++ +  +L +++++WPKE A  A   D L++
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  147  IPAFVVSELQTGYEIGFLIYIPFVVIDLLISNLLMALGMQQVSPQTITIPLKLLLFTLVG  206
            +PAFV+SELQ+G++IGFLIYIPF+VIDL++SN+L+ALGMQ V+P TI++PLK+LLF LV+
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  207  GWAKLLNALAMSYV  220
            GW++LL++L  SY+
Sbjct  180  GWTRLLDGLFYSYM  193

27) bscR in NC_018829


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  171 bits (633),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 101/198 (52%), Positives = 148/198 (75%), Gaps = 8/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            + T+FLKIA+VL + RNA+GVQQ PPNMALYG+AL  + ++MAPV   +G  V+ L  + 
Sbjct  3    ICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL  62

Query  85   GESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
            +        ++ A+ + + + V PLR+FM RN +P  +  +L  ++++W  E +   S D
Sbjct  63   D--------TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD  114

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL++ PAF++SEL A+FQ+GFL+Y+PFI+IDLIVSNILLA+GM MV+P+TIS+PLK++L
Sbjct  115  DLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILL  174

Query  205  FVMVDGWTRLIQGLVLSY  222
            FV+VDGWTRL++GL  SY
Sbjct  175  FVLVDGWTRLLDGLFYSY  192

28) bscR in NC_018518


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  171 bits (633),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 101/198 (52%), Positives = 148/198 (75%), Gaps = 8/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            + T+FLKIA+VL + RNA+GVQQ PPNMALYG+AL  + ++MAPV   +G  V+ L  + 
Sbjct  3    ICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL  62

Query  85   GESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
            +        ++ A+ + + + V PLR+FM RN +P  +  +L  ++++W  E +   S D
Sbjct  63   D--------TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD  114

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL++ PAF++SEL A+FQ+GFL+Y+PFI+IDLIVSNILLA+GM MV+P+TIS+PLK++L
Sbjct  115  DLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILL  174

Query  205  FVMVDGWTRLIQGLVLSY  222
            FV+VDGWTRL++GL  SY
Sbjct  175  FVLVDGWTRLLDGLFYSY  192

29) bscR in NC_017223


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  171 bits (633),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 101/198 (52%), Positives = 148/198 (75%), Gaps = 8/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            + T+FLKIA+VL + RNA+GVQQ PPNMALYG+AL  + ++MAPV   +G  V+ L  + 
Sbjct  3    ICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL  62

Query  85   GESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
            +        ++ A+ + + + V PLR+FM RN +P  +  +L  ++++W  E +   S D
Sbjct  63   D--------TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD  114

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL++ PAF++SEL A+FQ+GFL+Y+PFI+IDLIVSNILLA+GM MV+P+TIS+PLK++L
Sbjct  115  DLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILL  174

Query  205  FVMVDGWTRLIQGLVLSY  222
            FV+VDGWTRL++GL  SY
Sbjct  175  FVLVDGWTRLLDGLFYSY  192

30) bscR in NC_002929


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  171 bits (633),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 101/198 (52%), Positives = 148/198 (75%), Gaps = 8/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            + T+FLKIA+VL + RNA+GVQQ PPNMALYG+AL  + ++MAPV   +G  V+ L  + 
Sbjct  3    ICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL  62

Query  85   GESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
            +        ++ A+ + + + V PLR+FM RN +P  +  +L  ++++W  E +   S D
Sbjct  63   D--------TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD  114

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL++ PAF++SEL A+FQ+GFL+Y+PFI+IDLIVSNILLA+GM MV+P+TIS+PLK++L
Sbjct  115  DLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILL  174

Query  205  FVMVDGWTRLIQGLVLSY  222
            FV+VDGWTRL++GL  SY
Sbjct  175  FVLVDGWTRLLDGLFYSY  192

31) bscR in NC_019382


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  170 bits (627),  Expect = 6e-44, Method: Compositional matrix adjust.
 Identities = 101/198 (52%), Positives = 147/198 (75%), Gaps = 8/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            + T+FLKIA+VL + RNA+GVQQ PPNMALYG+AL  + ++MAPV   +G  V+ L  + 
Sbjct  3    ICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL  62

Query  85   GESGTAAPMALDAVLGVVERGVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
            +        ++ A+ +   + V PLR+FM RN +P  +  +L  ++++W  E +   S D
Sbjct  63   D--------TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD  114

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL++ PAF++SEL A+FQ+GFL+Y+PFI+IDLIVSNILLA+GM MV+P+TIS+PLK++L
Sbjct  115  DLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILL  174

Query  205  FVMVDGWTRLIQGLVLSY  222
            FV+VDGWTRL++GL  SY
Sbjct  175  FVLVDGWTRLLDGLFYSY  192

32) bscR in NC_002927


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  170 bits (627),  Expect = 6e-44, Method: Compositional matrix adjust.
 Identities = 101/198 (52%), Positives = 147/198 (75%), Gaps = 8/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            + T+FLKIA+VL + RNA+GVQQ PPNMALYG+AL  + ++MAPV   +G  V+ L  + 
Sbjct  3    ICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL  62

Query  85   GESGTAAPMALDAVLGVVERGVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
            +        ++ A+ +   + V PLR+FM RN +P  +  +L  ++++W  E +   S D
Sbjct  63   D--------TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD  114

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL++ PAF++SEL A+FQ+GFL+Y+PFI+IDLIVSNILLA+GM MV+P+TIS+PLK++L
Sbjct  115  DLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILL  174

Query  205  FVMVDGWTRLIQGLVLSY  222
            FV+VDGWTRL++GL  SY
Sbjct  175  FVLVDGWTRLLDGLFYSY  192

33) bscR in NC_002928


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  170 bits (627),  Expect = 6e-44, Method: Compositional matrix adjust.
 Identities = 101/198 (52%), Positives = 147/198 (75%), Gaps = 8/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            + T+FLKIA+VL + RNA+GVQQ PPNMALYG+AL  + ++MAPV   +G  V+ L  + 
Sbjct  3    ICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL  62

Query  85   GESGTAAPMALDAVLGVVERGVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
            +        ++ A+ +   + V PLR+FM RN +P  +  +L  ++++W  E +   S D
Sbjct  63   D--------TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD  114

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL++ PAF++SEL A+FQ+GFL+Y+PFI+IDLIVSNILLA+GM MV+P+TIS+PLK++L
Sbjct  115  DLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILL  174

Query  205  FVMVDGWTRLIQGLVLSY  222
            FV+VDGWTRL++GL  SY
Sbjct  175  FVLVDGWTRLLDGLFYSY  192

34) bscR in NC_018828


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  170 bits (627),  Expect = 6e-44, Method: Compositional matrix adjust.
 Identities = 101/198 (52%), Positives = 147/198 (75%), Gaps = 8/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            + T+FLKIA+VL + RNA+GVQQ PPNMALYG+AL  + ++MAPV   +G  V+ L  + 
Sbjct  3    ICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL  62

Query  85   GESGTAAPMALDAVLGVVERGVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
            +        ++ A+ +   + V PLR+FM RN +P  +  +L  ++++W  E +   S D
Sbjct  63   D--------TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD  114

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL++ PAF++SEL A+FQ+GFL+Y+PFI+IDLIVSNILLA+GM MV+P+TIS+PLK++L
Sbjct  115  DLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILL  174

Query  205  FVMVDGWTRLIQGLVLSY  222
            FV+VDGWTRL++GL  SY
Sbjct  175  FVLVDGWTRLLDGLFYSY  192

35) NH44784_014541 in NC_021285


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  167 bits (619),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 98/197 (50%), Positives = 148/197 (76%), Gaps = 7/197 (3%)

Query  25   MTTSFLKIAVVLTLVRNALGVQQVPPNMALYGLALILSAYVMGPVVMQIGDELRAPPAVA  84
            + T+FLKIA+VL + RNA+GVQQ PPNMALYG+AL  + ++M+PV  ++GD ++  P   
Sbjct  3    ICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE--  60

Query  85   APGTPEPDRLEGILEAVARGAEPMRAFMLKNSRAEQRDFFLRTARGLWGEQQARNLKEDD  144
                 + D + ++  A  +  EP+R+FM +N  ++ +  +L  ++ +W  + A +   DD
Sbjct  61   -----HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD  115

Query  145  LLVLIPSFLLSELTAAFQIGFLLYLPFVIIDLIVSNILLAMGMMMVSPVTISMPLKLFLF  204
            LL+++P+F+LSEL A+FQIGFL+Y+PF++IDLIVSNILLA+GM MV+P+TIS+PLK++LF
Sbjct  116  LLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLF  175

Query  205  VMVDGWTRLIQGLVLSY  221
            V+VDGWTRL++GL  SY
Sbjct  176  VLVDGWTRLLDGLFYSY  192

36) rhcR in NC_012586


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  164 bits (605),  Expect = 3e-42, Method: Compositional matrix adjust.
 Identities = 88/188 (47%), Positives = 142/188 (76%), Gaps = 0/188 (0%)

Query  29   TGFLKISIVLFLIRNALGIQQSPPNLVLYGVALILTVYVTTPLVGEMYRTLSSEQVDMQS  88
            T+FLKI++VL++ RNA+G+QQ+PPN+ LYG+AL  T+++ +P+ +EM   +     ++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  89   MDSMVRAANQLRAPLQAHLTRYTDENERQFFLQATERIWSEEARASVKTDSLLILVPAFV  148
              +M  A++++  PL++ +TR  D + +  +L+ T+R+W+ E       D LL++VPAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  149  SSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMGMMMVSPTLISIPLKIFLFVAVNGWSRL  208
             SEL  +F+IGFL+Y+PF+VIDLIVS +L+A+GM MV+P  IS+PLKI+LFV V+GW+RL
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  209  MHGLILSY  216
            ++GL+ SY
Sbjct  185  LDGLFYSY  192

37) SFHH103_04957 in NC_016815


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  163 bits (604),  Expect = 4e-42, Method: Compositional matrix adjust.
 Identities = 88/188 (47%), Positives = 142/188 (76%), Gaps = 0/188 (0%)

Query  29   TGFLKISIVLFLIRNALGIQQSPPNLVLYGVALILTVYVTTPLVGEMYRTLSSEQVDMQS  88
            T+FLKI++VL++ RNA+G+QQ+PPN+ LYG+AL  T+++ +P+ +EM   +     ++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  89   MDSMMRAANQLRAPLQAHLTRYTDENERQFFLQATERIWSEEARASVKTDSLLILVPAFV  148
              +M  A++++  PL++ +TR  D + +  +L+ T+R+W+ E       D LL++VPAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  149  SSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMGMMMVSPTLISIPLKIFLFVAVNGWSRL  208
             SEL  +F+IGFL+Y+PF+VIDLIVS +L+A+GM MV+P  IS+PLKI+LFV V+GW+RL
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  209  MHGLILSY  216
            ++GL+ SY
Sbjct  185  LDGLFYSY  192

38) USDA257_c21640 in NC_018000


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  163 bits (601),  Expect = 7e-42, Method: Compositional matrix adjust.
 Identities = 88/188 (47%), Positives = 141/188 (75%), Gaps = 0/188 (0%)

Query  29   TGFLKISIVLFLIRNALGIQQSPPNLVLYGVALILTVYVTTPLVGEMYRTLSSEQVDVQS  88
            T+FLKI++VL++ RNA+G+QQ+PPN+ LYG+AL  T+++ +P+ +EM   +     ++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  89   MDSMVRAADQLRAPLQAHLTRYTDENERQFFLQATERIWSEEARASVKTDSLLILVPAFV  148
              +M  A+ ++  PL++ +TR  D + +  +L+ T+R+W+ E       D LL++VPAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  149  SSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMGMMMVSPTLISIPLKIFLFVAVNGWSRL  208
             SEL  +F+IGFL+Y+PF+VIDLIVS +L+A+GM MV+P  IS+PLKI+LFV V+GW+RL
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  209  MHGLILSY  216
            ++GL+ SY
Sbjct  185  LDGLFYSY  192

39) C770_GR4pC1264 in NC_019848


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  161 bits (594),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 88/188 (47%), Positives = 141/188 (75%), Gaps = 0/188 (0%)

Query  28   TGFLKISIVLFLIRNALGIQQSPPNLVLYGVALILTVYVTTPLVGEMYRTLSSEPVDVQS  87
            T+FLKI++VL++ RNA+G+QQ+PPN+ LYG+AL  T+++ +P+ +EM   +   P ++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  88   IDSMMRAADSLRVPLQTHLKRYTDENERQFFMQATERIWSEEARAEVKTDSLLILVPAFV  147
            + +M  A+  +  PL+T + R  D + +  +++ T+R+W+ E       D LL++VPAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  148  SSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMGMMMVSPTLISIPLKIFLFVAVNGWSRL  207
             SEL  +F+IGFL+Y+PF+VIDLIVS +L+A+GM MV+P  IS+PLKI+LFV V+GW+RL
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  208  MHGLILSY  215
            ++GL+ SY
Sbjct  185  LDGLFYSY  192

40) yscR in NC_015717


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  160 bits (591),  Expect = 4e-41, Method: Compositional matrix adjust.
 Identities = 90/191 (48%), Positives = 141/191 (74%), Gaps = 0/191 (0%)

Query  31   IMATTYVKLVVVLGLVRNALGVQNVPPNMALNGIAIILTVYIMAPVAIASYQAVRDRPVD  90
            I+ T+++K+ +VL + RNA+GVQ+ PPNMAL GIA+  T++IMAPV     + V+  P +
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  91   TRNMESLADIARDGAKPFLHFLERNTTPADRAFFVDTTHRLWPKDQADSVTDHDILVLVP  150
                 ++   +++   P+  F+ RN  P  ++ +++ T+R+WPK+ AD  + +D+L++VP
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  151  AFTTAELTKAFKAGFLLFLPFIVIDLIVSNILLAMGMMMVSPMTISLPFKLFLFVIVNGW  210
            AF  +EL  +F+ GFL+++PFIVIDLIVSNILLA+GM MV+PMTISLP+K++LFV+V+GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  211  QKLIQGLVLSY  221
             +L++GL  SY
Sbjct  182  TRLLDGLFYSY  192

41) HCH_03263 in NC_007645


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  160 bits (590),  Expect = 5e-41, Method: Compositional matrix adjust.
 Identities = 95/195 (49%), Positives = 145/195 (75%), Gaps = 8/195 (4%)

Query  24   VMATSFVKIAVVLGLLRNALGIQQIPPNMALYGLAIILTAYIMAPVGISAYNELSTKPIS  83
            ++ T+F+KIA+VL + RNA+G+QQ PPNMALYG+A+  T +IMAPV    ++E++ +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPV----FSEMGDRVKK  57

Query  84   LENTQELKALMDTAS----QPYKEFLQRHGSEDEQTFFHETAAEIWPEDVAKGLEKDSFF  139
            L +  +  A M++A+    +P + F+ R+   D QT + E +  +WP ++A    +D ++
Sbjct  58   LPEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  140  VLIPAFTASELTSAFEIGFLIYLPFLAIDLIISNILLAMGMMMVSPMTISLPFKLLLFVL  199
            +++PAF  SEL ++F+IGFLIY+PF+ IDLI+SNILLA+GM MV+PMTISLP+K+LLFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  200  MDGWTRLIHGLVLAY  214
            +DGWTRL++GL  +Y
Sbjct  178  VDGWTRLLDGLFYSY  192

42) rhcR in NC_004463


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  158 bits (585),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 86/192 (45%), Positives = 140/192 (73%), Gaps = 0/192 (0%)

Query  25   VVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAALILTVFISAPVFEQTYNRLTDPQL  84
            ++  TAF+K+++VL++ RNA+G Q  PPN+ LYG AL  T+FI APVF +  +R+     
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   RYQSFDDWVMAAKEGQEPLRVHLKKFTNEEQRRFFLSSTEHVWSEEMRGSVTADDFSILV  144
            + ++F     A+K+  EPLR  + +  + + +  +L +T+++W+ EM +  + DD+ ++V
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDG  204
            P+F++SEL+ GF+IGFL+Y+PFI IDLIV+ IL+A+GM MV+P  IS+P+K++LFV +DG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WSRLMHGLVLSY  216
            W+RL++GL  SY
Sbjct  181  WTRLLDGLFYSY  192

43) rhcR in NC_017249


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  158 bits (585),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 86/192 (45%), Positives = 140/192 (73%), Gaps = 0/192 (0%)

Query  25   VVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAALILTVFISAPVFEQTYNRLTDPQL  84
            ++  TAF+K+++VL++ RNA+G Q  PPN+ LYG AL  T+FI APVF +  +R+     
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   RYQSFDDWVMAAKEGQEPLRVHLKKFTNEEQRRFFLSSTEHVWSEEMRGSVTADDFSILV  144
            + ++F     A+K+  EPLR  + +  + + +  +L +T+++W+ EM +  + DD+ ++V
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  145  PSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDG  204
            P+F++SEL+ GF+IGFL+Y+PFI IDLIV+ IL+A+GM MV+P  IS+P+K++LFV +DG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  205  WSRLMHGLVLSY  216
            W+RL++GL  SY
Sbjct  181  WTRLLDGLFYSY  192

44) DvMF_2439 in NC_011769


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  157 bits (581),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 93/197 (48%), Positives = 139/197 (71%), Gaps = 9/197 (4%)

Query  23   LMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILSIFIMAPMVESTLDILKTVRV  82
            +++ T+++KI +V  + RNA+GVQQ PP M + G+A+  ++FIMAP+     D     RV
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGD-----RV  55

Query  83   SEQPEPREVVELLDRAS----PPLRDFLSRNADDKVITAFMGTAKRIWPKERHDTIRREN  138
               PE  +    ++ A+     PLR F++RN D  + T ++  ++R+WPKE  D   R++
Sbjct  56   KKLPEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD  115

Query  139  LLILVPAFTISELTKAFQIGFLLYLPFVAIDLIISNILLAMGMMMVSPMTISLPFKLLLF  198
            LL++VPAF +SEL  +FQIGFL+Y+PF+ IDLI+SNILLA+GM MV+PMTISLP+K+LLF
Sbjct  116  LLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLF  175

Query  199  VTLDGWLKISQGLLLSY  215
            V +DGW ++ +GL+ SY
Sbjct  176  VLVDGWTRLLDGLFYSY  192

45) S58_72190 in NC_020453


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  157 bits (580),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 84/188 (45%), Positives = 139/188 (74%), Gaps = 0/188 (0%)

Query  27   TSFVKIAVVLFLIRNALGVQQTPPNLVLYAIALVLTAYVSAPLVQAVYERVNDRATEFQT  86
            T+F+KIA+VL++ RNA+GVQQ+PPN+ LY+IAL  T ++ AP+   + +RV+  + +++T
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  87   FADWKDAAERATQPVREHLSRFTTVAERDFFVTATGSLWPDSSRAKLSSEDLVILVPSFM  146
            FA    A+ +  +P+R  ++R      +  ++  T  +WP     K S +DL+++VP+F+
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  147  SSELKRAFEIGFLLYLPFIAIDLVVSAVLMSLGMSMVPPSTISVPFKLFLFVMVEGWSKL  206
             SEL+ +F+IGFL+Y+PFI IDL+VS +L++LGM MV+P TIS+P+K++LFV+V+GW++L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  207  MHGLVLSY  214
            ++GL  SY
Sbjct  185  LDGLFYSY  192

46) sctR in NC_020127


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  156 bits (574),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 90/197 (46%), Positives = 137/197 (70%), Gaps = 9/197 (4%)

Query  23   IMMVTSYVKIVVVTSLIRNALGVQQVPPAIVMNGLAIILSIFIMAPVYMKMEDLYLKTAL  82
            +++ T+++KI +V  + RNA+GVQQ PP + + G+A+  ++FIMAPV+  M D      +
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGD-----RV  55

Query  83   PSSPAALEVIKALYDAT----PPLREFLIRNADESTIRGLMVTAKRIWPKDQHETISRNN  138
               P  L+ + A+  A      PLR F+ RN D      L+  ++R+WPK+  +  SR++
Sbjct  56   KKLPEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD  115

Query  139  LLIIIPAFTITELTKSFQIGFLLYLPFVAIDLVVSNILLAMGMMMVSPMTISLPFKLLLF  198
            LL+++PAF ++EL  +FQIGFL+Y+PF+ IDL+VSNILLA+GM MV+PMTISLP+K+LLF
Sbjct  116  LLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLF  175

Query  199  VTLDGWLKISQGLMLSY  215
            V +DGW ++ +GL  SY
Sbjct  176  VLVDGWTRLLDGLFYSY  192

47) SctR in NC_008011


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  156 bits (574),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 90/197 (46%), Positives = 137/197 (70%), Gaps = 9/197 (4%)

Query  23   IMMVTSYVKIVVVTSLIRNALGVQQVPPAIVMNGLAIILSIFIMAPVYMKMEDLYLKTAL  82
            +++ T+++KI +V  + RNA+GVQQ PP + + G+A+  ++FIMAPV+  M D      +
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGD-----RV  55

Query  83   PSSPAALEVIKALYDAT----PPLREFLIRNADESTIRGLMVTAKRIWPKDQHETISRNN  138
               P  L+ + A+  A      PLR F+ RN D      L+  ++R+WPK+  +  SR++
Sbjct  56   KKLPEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD  115

Query  139  LLIIIPAFTITELTKSFQIGFLLYLPFVAIDLVVSNILLAMGMMMVSPMTISLPFKLLLF  198
            LL+++PAF ++EL  +FQIGFL+Y+PF+ IDL+VSNILLA+GM MV+PMTISLP+K+LLF
Sbjct  116  LLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLF  175

Query  199  VTLDGWLKISQGLMLSY  215
            V +DGW ++ +GL  SY
Sbjct  176  VLVDGWTRLLDGLFYSY  192

48) hrcR in NC_010996


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  155 bits (573),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 83/191 (44%), Positives = 141/191 (74%), Gaps = 0/191 (0%)

Query  25   VIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPVLQNSWQLLLAHSGD  84
            +I T+F KI++VLLI RNAIG+QQ+PPN+ +++IA+  + F+M PV+ +  + +   + +
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   FGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWANAPATSIASDDITVLTP  144
            ++T ++M  +   V  PL+ FM +  D++++  +++ +Q++W++  A   + DD+ ++ P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  SFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPLKLLLFVSIDGW  204
            +F++SEL  +F+IGFLIY+PF++ID+ VS IL+ALGMQM++P  +S PLK+LLFV +DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  RRLLEGLVLSY  215
             RLL+GL  SY
Sbjct  182  TRLLDGLFYSY  192

49) RHE_PD00059 in NC_004041


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  155 bits (570),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 83/191 (44%), Positives = 141/191 (74%), Gaps = 0/191 (0%)

Query  25   VIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPVLQNSWQLLLAHSGD  84
            +I T+F KI++VLLI RNAIG+QQ+PPN+ +++IA+  + F+M PV+ +  + +   + +
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   FGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWANAPATPIASDDITVLTP  144
            ++T ++M  +   V  PL+ FM +  D++++  +++ +Q++W++  A   + DD+ ++ P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  SFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPLKLLLFVSIDGW  204
            +F++SEL  +F+IGFLIY+PF++ID+ VS IL+ALGMQM++P  +S PLK+LLFV +DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  RRLLEGLVLSY  215
             RLL+GL  SY
Sbjct  182  TRLLDGLFYSY  192

50) ETAC_04225 in NC_020796


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  154 bits (568),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 89/193 (47%), Positives = 145/193 (76%), Gaps = 3/193 (1%)

Query  24   IVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLALILTLFIMTPVGTAVQARLADAPA  83
            +++ T+FLK+++V+ + RNA+G+QQ PPN+ALYG+AL  TLFIM+PV + +  R+   P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  84   EAQT-TLLARLSDNTLDPYRQFL-RQHTSATQLHFFRQVATKSWPASVREQISDDSLLLL  141
            + +T + +   + + ++P R F+ R+  +  Q H++ + + + WP  + ++ S D LLL+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLL-ENTQRMWPKEMADKASRDDLLLV  119

Query  142  MPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVG  201
            +PAF +S+L  +FQIG+L+++PFI IDLIVSNILLA+GM MV+PMTIS+P+K+L+F+LV+
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  202  GWDKLLGQLLLSY  214
            GW +LL+ L+ SY
Sbjct  180  GWTRLLDGLFYSY  192

51) esaR in NC_013508


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  154 bits (568),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 89/193 (47%), Positives = 145/193 (76%), Gaps = 3/193 (1%)

Query  24   IVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLALILTLFIMTPVGTAVQARLADAPA  83
            +++ T+FLK+++V+ + RNA+G+QQ PPN+ALYG+AL  TLFIM+PV + +  R+   P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  84   EAQT-TLLARLSDNTLDPYRQFL-RQHTSATQLHFFRQVATKSWPASVREQISDDSLLLL  141
            + +T + +   + + ++P R F+ R+  +  Q H++ + + + WP  + ++ S D LLL+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLL-ENTQRMWPKEMADKASRDDLLLV  119

Query  142  MPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVG  201
            +PAF +S+L  +FQIG+L+++PFI IDLIVSNILLA+GM MV+PMTIS+P+K+L+F+LV+
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  202  GWDKLLGQLLLSY  214
            GW +LL+ L+ SY
Sbjct  180  GWTRLLDGLFYSY  192

52) esaR in NC_017309


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  154 bits (568),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 89/193 (47%), Positives = 145/193 (76%), Gaps = 3/193 (1%)

Query  24   IVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLALILTLFIMTPVGTAVQARLADAPA  83
            +++ T+FLK+++V+ + RNA+G+QQ PPN+ALYG+AL  TLFIM+PV + +  R+   P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  84   EAQT-TLLARLSDNTLDPYRQFL-RQHTSATQLHFFRQVATKSWPASVREQISDDSLLLL  141
            + +T + +   + + ++P R F+ R+  +  Q H++ + + + WP  + ++ S D LLL+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLL-ENTQRMWPKEMADKASRDDLLLV  119

Query  142  MPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVG  201
            +PAF +S+L  +FQIG+L+++PFI IDLIVSNILLA+GM MV+PMTIS+P+K+L+F+LV+
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  202  GWDKLLGQLLLSY  214
            GW +LL+ L+ SY
Sbjct  180  GWTRLLDGLFYSY  192

53) Aave_0449 in NC_008752


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  153 bits (565),  Expect = 4e-39, Method: Compositional matrix adjust.
 Identities = 79/193 (41%), Positives = 144/193 (75%), Gaps = 2/193 (1%)

Query  27   MIVTSYTKVVVVLGLLRNALGVQQVPPNMVLNGIAIIISVYVMAPVAMEASDRMQMLPPS  86
            +I T++ K+ +VL + RNA+GVQQ PPNM L GIA+  ++++MAPV  E +DR++ LP  
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  87   AQSSNTQQMLAAASAAREPFRKFLDKHADAAEKAFFLKSAQALWPEERARSLQADDLVVL  146
             ++  + +  +A+    EP+R F+ ++ D+  ++ +L ++Q +WP E A     DDL+++
Sbjct  62   LDTFAAME--SAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  147  APAFLLTELTAAFRIGFLLYLAFIIVELVIANVLLAMGLSQVSPTNVAIPFKLLLFVVLD  206
             PAF+L+EL A+F+IGFL+Y++FI+++L+++N+LLA+G+  V+P  +++P+K+LLFV++D
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  207  GWSQVMHGLVMTY  219
            GW+++++GL  +Y
Sbjct  180  GWTRLLDGLFYSY  192

54) epaP in NC_021173


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  153 bits (565),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 86/192 (45%), Positives = 135/192 (71%), Gaps = 0/192 (0%)

Query  24   MVLGSSFLKLAVVFALLRNALGTQQIPPNIALYGLALVLTLFIMAPVGLAIQDNLAEHPV  83
            M++ ++FLK+A+V+ + RNA+G QQ PPN+ALYG+AL  TLFIMAPV   + D +   P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  84   QLDDKQFTQQVETTILAPYRDFLARNTARAQVRFFADIGHRTWPEPYRNRIPDDSLIVLI  143
            +LD     +     ++ P R F++RN        + +  +R WP    ++ + D L++++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  144  PAFAISQLIEAFKIGLLLFLPFVAIDLIVSNVLLAMGMMMVSPMTIALPLKLLVFVLING  203
            PAF +S+L  +F+IG+L+++PF+ IDLIVSN+LLA+GM MV+PMTI+LPLK+L+FVL++G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  204  WEKLLGQLVLSF  215
            W +LL+ L  S+
Sbjct  181  WTRLLDGLFYSY  192

55) Acav_0515 in NC_015138


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  153 bits (565),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 78/193 (41%), Positives = 144/193 (75%), Gaps = 2/193 (1%)

Query  27   MIVTSYTKVVVVLGLLRNALGVQQVPPNMVLNGIAIIISVYVMAPVAMEASDRMQMLPPS  86
            +I T++ K+ +VL + RNA+GVQQ PPNM L GIA+  ++++MAPV  E +DR++ LP  
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  87   AQSSNTQQMLAAASAAREPFRKFLDKHADAAEKAFFLKSAQALWPEDRARSLQADDLVVL  146
             ++  + +  +A+    EP+R F+ ++ D+  ++ +L ++Q +WP + A     DDL+++
Sbjct  62   LDTFAAME--SAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  147  APAFLLTELTAAFRIGFLLYLAFIIVELVIANVLLAMGLSQVSPTNVAIPFKLLLFVVLD  206
             PAF+L+EL A+F+IGFL+Y++FI+++L+++N+LLA+G+  V+P  +++P+K+LLFV++D
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  207  GWSQVMHGLVMTY  219
            GW+++++GL  +Y
Sbjct  180  GWTRLLDGLFYSY  192

56) Y11_35451 in NC_017564


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  152 bits (560),  Expect = 1e-38, Method: Compositional matrix adjust.
 Identities = 95/196 (49%), Positives = 146/196 (75%), Gaps = 6/196 (3%)

Query  24   MVMGTSFLKLSIVLSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL  83
            M++ T+FLK+++VL + RNA+GVQQ PPN+A+YG+AL  T+FIMAPV  ++  R++   L
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--L  58

Query  84   PNDLGAL--LYHIDEHALEPYRDFLQRNTDAA-QVHFFNDIVQTKWPVRYRDTIKPNSLL  140
            P++L+++  +   + H +EP R F+ RN D+  Q H++++  Q  WP    D    + LL
Sbjct  59   PEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLEN-TQRMWPKEMADKASRDDLL  117

Query  141  ILMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFIL  200
            +++PAF LS+L  +F+IG+L+Y+PF+ IDLIVSNILLA+GM MV+P+TISLP+K+L+F+L
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  201  IDGWGLLLGQLVGSYL  216
            +DGW  LL+ L  SY+
Sbjct  178  VDGWTRLLDGLFYSYM  193

57) escR in NC_005085


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  152 bits (560),  Expect = 1e-38, Method: Compositional matrix adjust.
 Identities = 87/193 (46%), Positives = 143/193 (75%), Gaps = 2/193 (1%)

Query  24   VVLGTSFLKLAVVFALLRNALGIQQIPPNIALYGLALILTLFIMAPIGLEIQDNLIAHPI  83
            +++ T+FLK+A+V+ + RNA+G+QQ PPN+ALYG+AL  TLFIMAP+  E+ D +   P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  84   KIESPAFIQQVESGVFTPYRVFLERNTAPE-QVHFFADIGHQIWPEKYQQRIPDNSLLVL  142
             +++ A ++     V  P R F+ RN  P+ Q H++ +  +++WP    ++ + + LL++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLEN-TQRMWPKEMADKASRDDLLLV  119

Query  143  MPAFTVSQLIEAFKIGLLLFLPFVAIDLVVSNVLLAMGMMMVSPMTISMPLKLLVFVLMN  202
            +PAF +S+L  +F+IG+L+++PF+ IDL+VSN+LLA+GM MV+PMTIS+PLK+L+FVL++
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  203  GWEKLLGQLVLSF  215
            GW +LL+ L  S+
Sbjct  180  GWTRLLDGLFYSY  192

58) Sbal175_2391 in NC_017571


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  152 bits (562),  Expect = 9e-39, Method: Compositional matrix adjust.
 Identities = 88/192 (46%), Positives = 140/192 (73%), Gaps = 2/192 (1%)

Query  25   VMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTLFTMAPVGMAINDNLKATPIV  84
            ++ T+FLK+A+V+ + RNA+G+QQ PPNMA+YG+AL  TLF MAPV   + D +K  P  
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   FDAPNVFEQINTEAIAPYRAFLDKN-TSNTQIEFFANIGHKVWPEKYQQVLTKDSLLVMV  143
            +D+    E    + + P R+F+ +N  ++ Q +++ N  +++WP    +  ++D LL++V
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLEN-TQRMWPKEMADKASRDDLLLVV  120

Query  144  PAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSPMTIALPFKLLIFILMGG  203
            PAF +S+L  +F+IG+LIY+PF+ IDLIVSNILLA+GM MV+PMTI+LP+K+L+F+L++G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  204  WEKLISQLMMSF  215
            W +L+  L  S+
Sbjct  181  WTRLLDGLFYSY  192

59) Sbal117_2090 in NC_017579


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  152 bits (562),  Expect = 9e-39, Method: Compositional matrix adjust.
 Identities = 88/192 (46%), Positives = 140/192 (73%), Gaps = 2/192 (1%)

Query  25   VMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTLFTMAPVGMAINDNLKATPIV  84
            ++ T+FLK+A+V+ + RNA+G+QQ PPNMA+YG+AL  TLF MAPV   + D +K  P  
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   FDAPNVFEQINTEAIAPYRAFLDKN-TSNTQIEFFANIGHKVWPEKYQQVLTKDSLLVMV  143
            +D+    E    + + P R+F+ +N  ++ Q +++ N  +++WP    +  ++D LL++V
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLEN-TQRMWPKEMADKASRDDLLLVV  120

Query  144  PAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSPMTIALPFKLLIFILMGG  203
            PAF +S+L  +F+IG+LIY+PF+ IDLIVSNILLA+GM MV+PMTI+LP+K+L+F+L++G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  204  WEKLISQLMMSF  215
            W +L+  L  S+
Sbjct  181  WTRLLDGLFYSY  192

60) Sbal_1974 in NC_009052


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  152 bits (562),  Expect = 9e-39, Method: Compositional matrix adjust.
 Identities = 88/192 (46%), Positives = 140/192 (73%), Gaps = 2/192 (1%)

Query  25   VMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTLFTMAPVGMAINDNLKATPIV  84
            ++ T+FLK+A+V+ + RNA+G+QQ PPNMA+YG+AL  TLF MAPV   + D +K  P  
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   FDAPNVFEQINTEAIAPYRAFLDKN-TSNTQIEFFANIGHKVWPEKYQQVLTKDSLLVMV  143
            +D+    E    + + P R+F+ +N  ++ Q +++ N  +++WP    +  ++D LL++V
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLEN-TQRMWPKEMADKASRDDLLLVV  120

Query  144  PAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSPMTIALPFKLLIFILMGG  203
            PAF +S+L  +F+IG+LIY+PF+ IDLIVSNILLA+GM MV+PMTI+LP+K+L+F+L++G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  204  WEKLISQLMMSF  215
            W +L+  L  S+
Sbjct  181  WTRLLDGLFYSY  192

61) Sbal195_2278 in NC_009997


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  152 bits (561),  Expect = 9e-39, Method: Compositional matrix adjust.
 Identities = 88/192 (46%), Positives = 140/192 (73%), Gaps = 2/192 (1%)

Query  25   VMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTLFTMAPVGMAINDNLKATPIV  84
            ++ T+FLK+A+V+ + RNA+G+QQ PPNMA+YG+AL  TLF MAPV   + D +K  P  
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   FDAPNVFEQINTEAIAPYRAFLEKN-TSNTQIEFFANIGHKVWPEKYQQVLTKDSLLVMV  143
            +D+    E    + + P R+F+ +N  ++ Q +++ N  +++WP    +  ++D LL++V
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLEN-TQRMWPKEMADKASRDDLLLVV  120

Query  144  PAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSPMTIALPFKLLIFILMGG  203
            PAF +S+L  +F+IG+LIY+PF+ IDLIVSNILLA+GM MV+PMTI+LP+K+L+F+L++G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  204  WEKLISQLMMSF  215
            W +L+  L  S+
Sbjct  181  WTRLLDGLFYSY  192

62) Sbal678_2288 in NC_016901


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  152 bits (561),  Expect = 9e-39, Method: Compositional matrix adjust.
 Identities = 88/192 (46%), Positives = 140/192 (73%), Gaps = 2/192 (1%)

Query  25   VMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTLFTMAPVGMAINDNLKATPIV  84
            ++ T+FLK+A+V+ + RNA+G+QQ PPNMA+YG+AL  TLF MAPV   + D +K  P  
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   FDAPNVFEQINTEAIAPYRAFLEKN-TSNTQIEFFANIGHKVWPEKYQQVLTKDSLLVMV  143
            +D+    E    + + P R+F+ +N  ++ Q +++ N  +++WP    +  ++D LL++V
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLEN-TQRMWPKEMADKASRDDLLLVV  120

Query  144  PAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSPMTIALPFKLLIFILMGG  203
            PAF +S+L  +F+IG+LIY+PF+ IDLIVSNILLA+GM MV+PMTI+LP+K+L+F+L++G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  204  WEKLISQLMMSF  215
            W +L+  L  S+
Sbjct  181  WTRLLDGLFYSY  192

63) hrcR in NC_011983


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  152 bits (562),  Expect = 9e-39, Method: Compositional matrix adjust.
 Identities = 84/191 (44%), Positives = 143/191 (75%), Gaps = 0/191 (0%)

Query  26   VVATSFTKIAVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPILQQCWQVLLRADVH  85
            ++ T+F KIA+VLLI RNAIG+QQ+PPN+ +++IA+  + F+M P++ +  + + +   H
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  86   FDTINGLAAGLSEVGAPLKAFMMKFSDEEVRQFFVNSSQRIWGDTATLPASPDDITVLTP  145
            +DT+ ++ ++  +V  PL++FM +  D +++  +++++QR+W    +  AS DD+ ++ P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  146  SFLVSELTRAFEIGFLLYLPFLMIDFAVSAILVALGMQMMSPTVVSTPFKLLLFVGVDGW  205
            +F++SEL  +F+IGFL+Y+PF++ID+ VS IL+ALGMQM++P  +S P+K+LLFV VDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  206  RRLLEGLVLSY  216
             RLL+GL  SY
Sbjct  182  TRLLDGLFYSY  192

64) yscR in NC_007645


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  151 bits (558),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 94/191 (50%), Positives = 147/191 (77%), Gaps = 0/191 (0%)

Query  24   IMTTSFIKLAVVFSLLRNALGIQQIPPNMALYGLAIVLSIYIMAPVGYQIADTVKEKGFD  83
            I+ T+F+K+A+V+ + RNA+G+QQ PPNMALYG+A+  +++IMAPV  +++D VK    +
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  84   LSQSESLKELANSAIDPMSEFLTKHSSEKERGFFLESAETLWPKEYAARLDTNSMLVLVP  143
            L    ++   ++  ++P+  F+T++     +  +LE+++ +WPKE A +   + +L++VP
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  SFTISELKSAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvllDGW  203
            +F +SEL+++F+IGFL+Y+PFI IDLIVSNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  TRLTHGLVLSY  214
            TRL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

65) Dvul_2984 in NC_008741


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  151 bits (558),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 89/197 (46%), Positives = 141/197 (72%), Gaps = 9/197 (4%)

Query  23   LMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFIMAPVASGTLDLMQNMKI  82
            +++ T+++KI +V  + RNA+GVQQ PP M + G+A+  ++FIMAPV S   D ++++  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKL--  58

Query  83   GPDPAPREIIALLDKAS----PPLRGFLERNADDKVVTVFMSTAKRIWPADQHASISRDN  138
               P   + +A ++ A+     PLR F+ RN D  + T ++  ++R+WP +     SRD+
Sbjct  59   ---PEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD  115

Query  139  LLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGMMMVSPMTISLPFKLLLF  198
            LL+++P+F +SEL  +FQIGFL+Y+PF+ IDL++SNILLA+GM MV+PMTISLP+K+LLF
Sbjct  116  LLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLF  175

Query  199  VTLDGWLKVSQGLLLSY  215
            V +DGW ++ +GL+ SY
Sbjct  176  VLVDGWTRLLDGLFYSY  192

66) DVUA0122 in NC_005863


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  151 bits (558),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 89/197 (46%), Positives = 141/197 (72%), Gaps = 9/197 (4%)

Query  23   LMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFIMAPVASGTLDLMQNMKI  82
            +++ T+++KI +V  + RNA+GVQQ PP M + G+A+  ++FIMAPV S   D ++++  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKL--  58

Query  83   GPDPAPREIIALLDKAS----PPLRGFLERNADDKVVTVFMSTAKRIWPADQHASISRDN  138
               P   + +A ++ A+     PLR F+ RN D  + T ++  ++R+WP +     SRD+
Sbjct  59   ---PEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD  115

Query  139  LLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGMMMVSPMTISLPFKLLLF  198
            LL+++P+F +SEL  +FQIGFL+Y+PF+ IDL++SNILLA+GM MV+PMTISLP+K+LLF
Sbjct  116  LLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLF  175

Query  199  VTLDGWLKVSQGLLLSY  215
            V +DGW ++ +GL+ SY
Sbjct  176  VLVDGWTRLLDGLFYSY  192

67) Deval_3224 in NC_017311


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  151 bits (558),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 89/197 (46%), Positives = 141/197 (72%), Gaps = 9/197 (4%)

Query  23   LMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFIMAPVASGTLDLMQNMKI  82
            +++ T+++KI +V  + RNA+GVQQ PP M + G+A+  ++FIMAPV S   D ++++  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKL--  58

Query  83   GPDPAPREIIALLDKAS----PPLRGFLERNADDKVVTVFMSTAKRIWPADQHASISRDN  138
               P   + +A ++ A+     PLR F+ RN D  + T ++  ++R+WP +     SRD+
Sbjct  59   ---PEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD  115

Query  139  LLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGMMMVSPMTISLPFKLLLF  198
            LL+++P+F +SEL  +FQIGFL+Y+PF+ IDL++SNILLA+GM MV+PMTISLP+K+LLF
Sbjct  116  LLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLF  175

Query  199  VTLDGWLKVSQGLLLSY  215
            V +DGW ++ +GL+ SY
Sbjct  176  VLVDGWTRLLDGLFYSY  192

68) YE105_C0338 in NC_015224


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  150 bits (553),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 94/196 (48%), Positives = 146/196 (75%), Gaps = 6/196 (3%)

Query  24   MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL  83
            M++ T+FLK+++V+ + RNA+GVQQ PPN+A+YG+AL  T+FIMAPV  ++  R++   L
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--L  58

Query  84   PNDLGAL--LYHIDEHALEPYRDFLQRNTDAA-QVHFFNDIVQTKWPVRYRDTIKPNSLL  140
            P++L+++  +   + H +EP R F+ RN D+  Q H++++  Q  WP    D    + LL
Sbjct  59   PEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLEN-TQRMWPKEMADKASRDDLL  117

Query  141  ILMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFIL  200
            +++PAF LS+L  +F+IG+L+Y+PF+ IDLIVSNILLA+GM MV+P+TISLP+K+L+F+L
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  201  IDGWGLLLGQLVGSYL  216
            +DGW  LL+ L  SY+
Sbjct  178  VDGWTRLLDGLFYSYM  193

69) yscR in NC_016642


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  150 bits (553),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 86/189 (46%), Positives = 142/189 (76%), Gaps = 0/189 (0%)

Query  28   TSFIKLSVVLLLVRNALGVQQIPPNMALNALAIILSGYIMLPVFLQTFEILEKGNYSIAT  87
            T+F+K+++VLL+ RNA+GVQQ PPNMAL ++A+  + +IM PVF +  + + K    + T
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  88   VEDMKTTFVAAKGPLEEFLAKHADSKEKAFFLEASRQLWPAEVADSMSADSIAILLPAYT  147
               M ++      PL  F++++ D+  ++ +LE ++++WP E+AD  S D + +++PA+ 
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  148  VSQLREAFEIGFLLYLPFLAIDLVVSNILLAMGMMMVSPLTISLPFKLFLFVAVDGWSRL  207
            +S+L+ +F+IGFL+Y+PF+ IDL+VSNILLA+GM MV+P+TISLP+K++LFV VDGW+RL
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  208  ILGLIKTYV  216
            + GL+ +Y+
Sbjct  185  LDGLFYSYM  193

70) epaP in NC_021174


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  150 bits (553),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 138/191 (73%), Gaps = 2/191 (1%)

Query  24   VLVTSFTKIAVVFALVKNAIGIQQVPSTLVTNALALIVTLYVMAPVLSDVAANASNGPAR  83
            ++ T+F KIA+V+ + +NAIG+QQ P+ +   ++AL  TL++MAPV+S+++    + P +
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  84   GQS--RIEWLSGAVSGPVGGFMKKHVDPREQERLIASAAQIWPDTMAKSVKPDDFFILAP  141
             ++   +E  +  V  P+  FM +++DP  Q +L+ ++ ++WP  MA     DD++++ P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  142  AFAISELTAAFKIGFVLYLAFVAIDLIVANILMAMGMIMFSPTIVSIPLKIVLFALADGW  201
            AF +SEL A+F+IGF++Y++F+ IDLIV+NIL+A+GM M +P  +S+PLKI+LF L DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  202  SRLIQSLILTY  212
            +RL+++L+ +Y
Sbjct  182  TRLLDGLFYSY  192

71) SVI_2230 in NC_014012


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  150 bits (552),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 87/191 (46%), Positives = 135/191 (71%), Gaps = 0/191 (0%)

Query  25   VMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLSLILTLFIMAPIGMEINDNLKVHPIV  84
            ++ T+FLK+++VL + RNA+G+QQ PPNMA+YG++L  TLFIMAP+  E+ D +K  P  
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   FDSANIIEQVNTLAIIPYRDFLEKNTSKTQLDFFANIGHKTWPDKYQDVLSKDSLFVMLP  144
            +D+   +E      + P R F+ +N        + +  ++ WP    D  S+D L++++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSPMTISLPFKLLIFILMGGW  204
            AF +S+L  +F+IG+LIY+PF+ IDLIVSNILLA+GM MV+PMTISLP+K+L+F+L++GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  EKLVSQLMVSF  215
             +L+  L  S+
Sbjct  182  TRLLDGLFYSY  192

72) mlr8766 in NC_002678


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  150 bits (551),  Expect = 6e-38, Method: Compositional matrix adjust.
 Identities = 85/179 (48%), Positives = 132/179 (74%), Gaps = 0/179 (0%)

Query  38   LFLVRNALGTQTIPPNIALYAVALILTMFLSAPVVEQTYDRMTDPKLHYQTFDDWVSAAK  97
            L++ RNA+G Q  PPN+ALY++AL  T+F+ APV  +  DR+     H +TF    SA+K
Sbjct  14   LLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDTFAAMESAGK  73

Query  98   SGSEPLRDHLKKFTNEEQRQFFLSSTEKVWPAEMRAKATVDDLSILVPSFLISELKRAFE  157
               EPLR  + +  + + +  +L +T+++WP EM  KA+ DDL ++VP+F++SEL+ +F+
Sbjct  74   HVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFVLSELQAGFQ  133

Query  158  IGFLLYLPFIVIDLIVTTILMAMGMSMVSPTLISVPFKLFVFVAIDGWSKLMHGLVLSY  216
            IGFL+Y+PFIVIDLIV+ IL+A+GM MV+P  IS+P+K+++FV +DGW++L++GL  SY
Sbjct  134  IGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRLLDGLFYSY  192

73) Varpa_4985 in NC_014931


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  149 bits (548),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 85/193 (45%), Positives = 136/193 (71%), Gaps = 2/193 (1%)

Query  26   LMVTSYTKLIIVFGLLRTALGLQQTPPNMVLNGIAIILSVYIMAPVGMEVGDALRNRTLG  85
            ++ T++ K+ +V+ + R A+G+QQ+PPNM L GIA+  +++IMAPV  E+GD  R + L 
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGD--RVKKLP  59

Query  86   QKGEGLNDIVAVIDAAKVPLKEFLQKHTRERERQFFLKSASSMWPQARAAQLQPDDFMVL  145
            +  + +  + +       PL+ F+ ++     +  +L ++  MWP+  A +   DD++++
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  146  VPSFTLSELTRAFQIGFVIYLVFVVVDLIVATVLLALGMSMIAPTTISLPFKLLLFVMLD  205
            VP+F LSEL  +FQIGF+IY+ F+V+DLIV+ +LLALGM M+AP TISLP+K+LLFV++D
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  206  GWTRLVHGLVLSY  218
            GWTRL++GL  SY
Sbjct  180  GWTRLLDGLFYSY  192

74) REMIM1_PE00285 in NC_021909


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  149 bits (548),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 80/186 (44%), Positives = 136/186 (74%), Gaps = 0/186 (0%)

Query  31   FIKVSVVLFLVRNALGTQTIPPNIVLYAAALILTLFISAPVIEQTYIRIADPKLRYQTLD  90
            F+K+++VL++ RNA+G Q  PPN+ LY+ AL  TLFI APV+ +   R+     + +T+ 
Sbjct  7    FLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDTFA  66

Query  91   DWVTAAEEGREPLRDYLKKFTSEEQRRFFLSSTKQVWPEEMRARTTPDDFAILVPSFLIS  150
               +A+ +  EPLR ++ +    + +  +L +T+++WP EM  +++ DD+ ++VP+F++S
Sbjct  67   AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFVLS  126

Query  151  ELKRAFEIGFLLYLPFICIDLIVTTILMAMGMSMVSPTVIAVPFKLFLFVTIDGWSQLMH  210
            EL+ +F+IGFL+Y+PFI IDLIV+ IL+A+GM MV+P  I++P+K++LFV +DGW++L++
Sbjct  127  ELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRLLD  186

Query  211  GLVLSY  216
            GL  SY
Sbjct  187  GLFYSY  192

75) VAPA_2c06210 in NC_022234


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  148 bits (546),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 81/193 (42%), Positives = 138/193 (72%), Gaps = 2/193 (1%)

Query  26   LMVTSYTKLVIVFGLLRTALGLQQTPPNMVLNGIAIILSVYIMAPVGMDIGDALRGRSFG  85
            ++ T++ K+ +V+ + R A+G+QQ+PPNM L GIA+  +++IMAPV  ++GD  R + + 
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGD--RVKKLP  59

Query  86   AKGEGLGDIMAVIDAAKAPVKEFLQKHTHERERQFFLKSAANIWPKARAEQLKDDDFMVL  145
               + ++ + +       P++ F+ ++ +   +  +L ++  +WPK  A++   DD++++
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  146  VPSFTLSELTRAFQIGFIIYLVFVVVDLIVATVLLALGMSMISPTTISLPFKLLLFVMLD  205
            VP+F LSEL  +FQIGF+IY+ F+V+DLIV+ +LLALGM M++P TISLP+K+LLFV++D
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  206  GWTRLVHGLVLSY  218
            GWTRL++GL  SY
Sbjct  180  GWTRLLDGLFYSY  192

76) C770_GR4pB210 in NC_019847


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  147 bits (542),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 135/191 (71%), Gaps = 0/191 (0%)

Query  25   VVATSFTRISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPVLQSSWQLLILHGAD  84
            ++ T+F +I++VLLI RNAIG+QQ+PPN+ +++IA+  + F+M PV+    + +     +
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   FSTVGGMADGMVKVGAPLKEFMTKFSDEEVRGFFVEASQKIWVDAPTIPIASDDVTILTP  144
            + T ++M  +   V  PL+ FMT+  D +++  ++E +Q++W    +   + DD+ ++ P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  SFLVSELTRAFEAGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPIKLLLFVSIDGW  204
            +F++SEL  +F+ GFLIY+PF++ID+ VS IL+ALGMQM++P  +S P+K+LLFV +DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  RRLLEGLVLSY  215
             RLL+GL  SY
Sbjct  182  TRLLDGLFYSY  192

77) epaP in NC_010159


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  146 bits (538),  Expect = 6e-37, Method: Compositional matrix adjust.
 Identities = 91/191 (48%), Positives = 144/191 (76%), Gaps = 4/191 (2%)

Query  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87
            TAFLK+++V+ + RNA+GVQQ PPN+A+YG+AL  T+FIMAPV  ++  R+++  L++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  88   GALA--HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145
            +++A  +  +++ + P R F+ RN D +  T + +  Q  WP    D    D LL+++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205
            F LS+L+ +F+IG+L+++PF+ IDLIVSNILLA+GM MV+PMT+SLP+K+L+FVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  206  LVLGQLVGSYL  216
             +L+ L  SY+
Sbjct  183  RLLDGLFYSYM  193

78) YPO0270 in NC_003143


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  146 bits (538),  Expect = 6e-37, Method: Compositional matrix adjust.
 Identities = 91/191 (48%), Positives = 144/191 (76%), Gaps = 4/191 (2%)

Query  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87
            TAFLK+++V+ + RNA+GVQQ PPN+A+YG+AL  T+FIMAPV  ++  R+++  L++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  88   GALA--HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145
            +++A  +  +++ + P R F+ RN D +  T + +  Q  WP    D    D LL+++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205
            F LS+L+ +F+IG+L+++PF+ IDLIVSNILLA+GM MV+PMT+SLP+K+L+FVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  206  LVLGQLVGSYL  216
             +L+ L  SY+
Sbjct  183  RLLDGLFYSYM  193

79) YPD4_0235 in NC_017154


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  146 bits (538),  Expect = 6e-37, Method: Compositional matrix adjust.
 Identities = 91/191 (48%), Positives = 144/191 (76%), Gaps = 4/191 (2%)

Query  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87
            TAFLK+++V+ + RNA+GVQQ PPN+A+YG+AL  T+FIMAPV  ++  R+++  L++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  88   GALA--HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145
            +++A  +  +++ + P R F+ RN D +  T + +  Q  WP    D    D LL+++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205
            F LS+L+ +F+IG+L+++PF+ IDLIVSNILLA+GM MV+PMT+SLP+K+L+FVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  206  LVLGQLVGSYL  216
             +L+ L  SY+
Sbjct  183  RLLDGLFYSYM  193

80) YPD8_0240 in NC_017160


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  146 bits (538),  Expect = 6e-37, Method: Compositional matrix adjust.
 Identities = 91/191 (48%), Positives = 144/191 (76%), Gaps = 4/191 (2%)

Query  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87
            TAFLK+++V+ + RNA+GVQQ PPN+A+YG+AL  T+FIMAPV  ++  R+++  L++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  88   GALA--HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145
            +++A  +  +++ + P R F+ RN D +  T + +  Q  WP    D    D LL+++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205
            F LS+L+ +F+IG+L+++PF+ IDLIVSNILLA+GM MV+PMT+SLP+K+L+FVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  206  LVLGQLVGSYL  216
             +L+ L  SY+
Sbjct  183  RLLDGLFYSYM  193

81) YPZ3_0233 in NC_014029


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  146 bits (538),  Expect = 6e-37, Method: Compositional matrix adjust.
 Identities = 91/191 (48%), Positives = 144/191 (76%), Gaps = 4/191 (2%)

Query  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87
            TAFLK+++V+ + RNA+GVQQ PPN+A+YG+AL  T+FIMAPV  ++  R+++  L++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  88   GALA--HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145
            +++A  +  +++ + P R F+ RN D +  T + +  Q  WP    D    D LL+++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205
            F LS+L+ +F+IG+L+++PF+ IDLIVSNILLA+GM MV+PMT+SLP+K+L+FVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  206  LVLGQLVGSYL  216
             +L+ L  SY+
Sbjct  183  RLLDGLFYSYM  193

82) epaP in NC_009708


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  146 bits (538),  Expect = 6e-37, Method: Compositional matrix adjust.
 Identities = 91/191 (48%), Positives = 144/191 (76%), Gaps = 4/191 (2%)

Query  28   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  87
            TAFLK+++V+ + RNA+GVQQ PPN+A+YG+AL  T+FIMAPV  ++  R+++  L++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  88   GALA--HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145
            +++A  +  +++ + P R F+ RN D +  T + +  Q  WP    D    D LL+++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  205
            F LS+L+ +F+IG+L+++PF+ IDLIVSNILLA+GM MV+PMT+SLP+K+L+FVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  206  LVLGQLVGSYL  216
             +L+ L  SY+
Sbjct  183  RLLDGLFYSYM  193

83) A1122_03785 in NC_017168


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  146 bits (538),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 91/191 (48%), Positives = 144/191 (76%), Gaps = 4/191 (2%)

Query  48   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  107
            TAFLK+++V+ + RNA+GVQQ PPN+A+YG+AL  T+FIMAPV  ++  R+++  L++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  108  GALA--HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
            +++A  +  +++ + P R F+ RN D +  T + +  Q  WP    D    D LL+++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  225
            F LS+L+ +F+IG+L+++PF+ IDLIVSNILLA+GM MV+PMT+SLP+K+L+FVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  226  LVLGQLVGSYL  236
             +L+ L  SY+
Sbjct  183  RLLDGLFYSYM  193

84) YPA_4012 in NC_008150


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  146 bits (538),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 91/191 (48%), Positives = 144/191 (76%), Gaps = 4/191 (2%)

Query  48   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  107
            TAFLK+++V+ + RNA+GVQQ PPN+A+YG+AL  T+FIMAPV  ++  R+++  L++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  108  GALA--HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
            +++A  +  +++ + P R F+ RN D +  T + +  Q  WP    D    D LL+++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  225
            F LS+L+ +F+IG+L+++PF+ IDLIVSNILLA+GM MV+PMT+SLP+K+L+FVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  226  LVLGQLVGSYL  236
             +L+ L  SY+
Sbjct  183  RLLDGLFYSYM  193

85) fliP1 in NC_005810


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  146 bits (538),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 91/191 (48%), Positives = 144/191 (76%), Gaps = 4/191 (2%)

Query  48   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  107
            TAFLK+++V+ + RNA+GVQQ PPN+A+YG+AL  T+FIMAPV  ++  R+++  L++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  108  GALA--HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
            +++A  +  +++ + P R F+ RN D +  T + +  Q  WP    D    D LL+++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  225
            F LS+L+ +F+IG+L+++PF+ IDLIVSNILLA+GM MV+PMT+SLP+K+L+FVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  226  LVLGQLVGSYL  236
             +L+ L  SY+
Sbjct  183  RLLDGLFYSYM  193

86) y0530 in NC_004088


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  146 bits (538),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 91/191 (48%), Positives = 144/191 (76%), Gaps = 4/191 (2%)

Query  48   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  107
            TAFLK+++V+ + RNA+GVQQ PPN+A+YG+AL  T+FIMAPV  ++  R+++  L++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  108  GALA--HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
            +++A  +  +++ + P R F+ RN D +  T + +  Q  WP    D    D LL+++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  225
            F LS+L+ +F+IG+L+++PF+ IDLIVSNILLA+GM MV+PMT+SLP+K+L+FVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  226  LVLGQLVGSYL  236
             +L+ L  SY+
Sbjct  183  RLLDGLFYSYM  193

87) YPN_3397 in NC_008149


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  146 bits (538),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 91/191 (48%), Positives = 144/191 (76%), Gaps = 4/191 (2%)

Query  48   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  107
            TAFLK+++V+ + RNA+GVQQ PPN+A+YG+AL  T+FIMAPV  ++  R+++  L++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  108  GALA--HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
            +++A  +  +++ + P R F+ RN D +  T + +  Q  WP    D    D LL+++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  225
            F LS+L+ +F+IG+L+++PF+ IDLIVSNILLA+GM MV+PMT+SLP+K+L+FVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  226  LVLGQLVGSYL  236
             +L+ L  SY+
Sbjct  183  RLLDGLFYSYM  193

88) YPDSF_3700 in NC_009381


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  146 bits (538),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 91/191 (48%), Positives = 144/191 (76%), Gaps = 4/191 (2%)

Query  48   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  107
            TAFLK+++V+ + RNA+GVQQ PPN+A+YG+AL  T+FIMAPV  ++  R+++  L++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  108  GALA--HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
            +++A  +  +++ + P R F+ RN D +  T + +  Q  WP    D    D LL+++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  225
            F LS+L+ +F+IG+L+++PF+ IDLIVSNILLA+GM MV+PMT+SLP+K+L+FVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  226  LVLGQLVGSYL  236
             +L+ L  SY+
Sbjct  183  RLLDGLFYSYM  193

89) YPTB0327 in NC_006155


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  146 bits (538),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 91/191 (48%), Positives = 144/191 (76%), Gaps = 4/191 (2%)

Query  48   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  107
            TAFLK+++V+ + RNA+GVQQ PPN+A+YG+AL  T+FIMAPV  ++  R+++  L++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  108  GALA--HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
            +++A  +  +++ + P R F+ RN D +  T + +  Q  WP    D    D LL+++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  225
            F LS+L+ +F+IG+L+++PF+ IDLIVSNILLA+GM MV+PMT+SLP+K+L+FVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  226  LVLGQLVGSYL  236
             +L+ L  SY+
Sbjct  183  RLLDGLFYSYM  193

90) YPTS_0351 in NC_010634


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  146 bits (538),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 91/191 (48%), Positives = 144/191 (76%), Gaps = 4/191 (2%)

Query  48   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  107
            TAFLK+++V+ + RNA+GVQQ PPN+A+YG+AL  T+FIMAPV  ++  R+++  L++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  108  GALA--HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
            +++A  +  +++ + P R F+ RN D +  T + +  Q  WP    D    D LL+++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  225
            F LS+L+ +F+IG+L+++PF+ IDLIVSNILLA+GM MV+PMT+SLP+K+L+FVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  226  LVLGQLVGSYL  236
             +L+ L  SY+
Sbjct  183  RLLDGLFYSYM  193

91) YPK_3902 in NC_010465


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  146 bits (538),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 91/191 (48%), Positives = 144/191 (76%), Gaps = 4/191 (2%)

Query  48   TAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDI  107
            TAFLK+++V+ + RNA+GVQQ PPN+A+YG+AL  T+FIMAPV  ++  R+++  L++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  108  GALA--HQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
            +++A  +  +++ + P R F+ RN D +  T + +  Q  WP    D    D LL+++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWS  225
            F LS+L+ +F+IG+L+++PF+ IDLIVSNILLA+GM MV+PMT+SLP+K+L+FVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  226  LVLGQLVGSYL  236
             +L+ L  SY+
Sbjct  183  RLLDGLFYSYM  193

92) ECs4583 in NC_002695


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  145 bits (532),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 82/184 (45%), Positives = 134/184 (73%), Gaps = 2/184 (1%)

Query  30   IGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINY  89
            I T+FLKI++VL I +NA+G+QQ PPNMAL +++L  T+FIM+P++ ++ D + + P + 
Sbjct  3    ICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL  62

Query  90   TDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNETILK--KDSLFILLPA  147
                  +  +  ++ P R F+ +N + D    +   +Q+   +E   K  +D L++++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  148  FTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207
            F +++L+A+F+IGFL+Y+PFI IDLI+SNILLALGM MV+P+TIS+P+KILLF+LV+GW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  208  KLFE  211
            +L++
Sbjct  183  RLLD  186

93) PADK2_17235 in NC_018080


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  144 bits (530),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 94/191 (50%), Positives = 146/191 (77%), Gaps = 0/191 (0%)

Query  25   VMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLRNHDVS  84
            ++ T+F+K+++V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D +++    
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LNDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSLLILLP  144
            L+  A++E    + + P R F+ R+++   +T ++E+T+++WP E A++   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFI IDLI+SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  ARLTHGLVISY  215
            +RL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

94) escR in NC_013364


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  144 bits (529),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 81/182 (45%), Positives = 133/182 (74%), Gaps = 2/182 (1%)

Query  32   TSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYTD  91
            T+FLKI++VL I +NA+G+QQ PPNMAL +++L  T+FIM+P++ ++ D + + P +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  92   SDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNETILK--KDSLFILLPAFT  149
                +  +  ++ P R F+ +N + D    +   +Q+   +E   K  +D L++++PAF 
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  150  MGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKL  209
            +++L+A+F+IGFL+Y+PFI IDLI+SNILLALGM MV+P+TIS+P+KILLF+LV+GW +L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  210  FE  211
            ++
Sbjct  185  LD  186

95) escR in NC_011601


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  144 bits (529),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 81/182 (45%), Positives = 133/182 (74%), Gaps = 2/182 (1%)

Query  32   TSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYTD  91
            T+FLKI++VL I +NA+G+QQ PPNMAL +++L  T+FIM+P++ ++ D + + P +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  92   SDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNETILK--KDSLFILLPAFT  149
                +  +  ++ P R F+ +N + D    +   +Q+   +E   K  +D L++++PAF 
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  150  MGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKL  209
            +++L+A+F+IGFL+Y+PFI IDLI+SNILLALGM MV+P+TIS+P+KILLF+LV+GW +L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  210  FE  211
            ++
Sbjct  185  LD  186

96) epaP in NC_011353


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  144 bits (529),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 81/182 (45%), Positives = 133/182 (74%), Gaps = 2/182 (1%)

Query  32   TSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYTD  91
            T+FLKI++VL I +NA+G+QQ PPNMAL +++L  T+FIM+P++ ++ D + + P +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  92   SDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNETILK--KDSLFILLPAFT  149
                +  +  ++ P R F+ +N + D    +   +Q+   +E   K  +D L++++PAF 
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  150  MGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKL  209
            +++L+A+F+IGFL+Y+PFI IDLI+SNILLALGM MV+P+TIS+P+KILLF+LV+GW +L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  210  FE  211
            ++
Sbjct  185  LD  186

97) escR in NC_002655


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  144 bits (529),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 81/182 (45%), Positives = 133/182 (74%), Gaps = 2/182 (1%)

Query  32   TSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYTD  91
            T+FLKI++VL I +NA+G+QQ PPNMAL +++L  T+FIM+P++ ++ D + + P +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  92   SDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNETILK--KDSLFILLPAFT  149
                +  +  ++ P R F+ +N + D    +   +Q+   +E   K  +D L++++PAF 
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  150  MGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKL  209
            +++L+A+F+IGFL+Y+PFI IDLI+SNILLALGM MV+P+TIS+P+KILLF+LV+GW +L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  210  FE  211
            ++
Sbjct  185  LD  186

98) escR in NC_013008


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  144 bits (529),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 81/182 (45%), Positives = 133/182 (74%), Gaps = 2/182 (1%)

Query  32   TSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYTD  91
            T+FLKI++VL I +NA+G+QQ PPNMAL +++L  T+FIM+P++ ++ D + + P +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  92   SDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNETILK--KDSLFILLPAFT  149
                +  +  ++ P R F+ +N + D    +   +Q+   +E   K  +D L++++PAF 
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  150  MGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKL  209
            +++L+A+F+IGFL+Y+PFI IDLI+SNILLALGM MV+P+TIS+P+KILLF+LV+GW +L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  210  FE  211
            ++
Sbjct  185  LD  186

99) escR in NC_013941


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  144 bits (529),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 81/182 (45%), Positives = 133/182 (74%), Gaps = 2/182 (1%)

Query  32   TSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYTD  91
            T+FLKI++VL I +NA+G+QQ PPNMAL +++L  T+FIM+P++ ++ D + + P +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  92   SDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNETILK--KDSLFILLPAFT  149
                +  +  ++ P R F+ +N + D    +   +Q+   +E   K  +D L++++PAF 
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  150  MGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKL  209
            +++L+A+F+IGFL+Y+PFI IDLI+SNILLALGM MV+P+TIS+P+KILLF+LV+GW +L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  210  FE  211
            ++
Sbjct  185  LD  186

100) ECO55CA74_21290 in NC_017656


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  144 bits (529),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 81/182 (45%), Positives = 133/182 (74%), Gaps = 2/182 (1%)

Query  32   TSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYTD  91
            T+FLKI++VL I +NA+G+QQ PPNMAL +++L  T+FIM+P++ ++ D + + P +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  92   SDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNETILK--KDSLFILLPAFT  149
                +  +  ++ P R F+ +N + D    +   +Q+   +E   K  +D L++++PAF 
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  150  MGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKL  209
            +++L+A+F+IGFL+Y+PFI IDLI+SNILLALGM MV+P+TIS+P+KILLF+LV+GW +L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  210  FE  211
            ++
Sbjct  185  LD  186

101) CDCO157_4318 in NC_017906


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  144 bits (529),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 81/182 (45%), Positives = 133/182 (74%), Gaps = 2/182 (1%)

Query  32   TSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYTD  91
            T+FLKI++VL I +NA+G+QQ PPNMAL +++L  T+FIM+P++ ++ D + + P +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  92   SDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNETILK--KDSLFILLPAFT  149
                +  +  ++ P R F+ +N + D    +   +Q+   +E   K  +D L++++PAF 
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  150  MGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKL  209
            +++L+A+F+IGFL+Y+PFI IDLI+SNILLALGM MV+P+TIS+P+KILLF+LV+GW +L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  210  FE  211
            ++
Sbjct  185  LD  186

102) escR in NC_013353


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  144 bits (529),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 80/182 (44%), Positives = 133/182 (74%), Gaps = 2/182 (1%)

Query  32   TSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYTD  91
            T+FLKI++VL I +NA+G+QQ PPNMAL +++L  T+FIM+P++ ++ D + + P +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  92   SDFFQKVDEKILSPYRGFLEKNTEKENVEFFERAAQKKLGNETILK--KDSLFILLPAFT  149
                +  +  ++ P R F+ +N + +    +   +Q+   +E   K  +D L++++PAF 
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  150  MGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKL  209
            +++L+A+F+IGFL+Y+PFI IDLI+SNILLALGM MV+P+TIS+P+KILLF+LV+GW +L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  210  FE  211
            ++
Sbjct  185  LD  186

103) escR in NC_013361


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  144 bits (529),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 80/182 (44%), Positives = 133/182 (74%), Gaps = 2/182 (1%)

Query  32   TSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYTD  91
            T+FLKI++VL I +NA+G+QQ PPNMAL +++L  T+FIM+P++ ++ D + + P +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  92   SDFFQKVDEKILSPYRGFLEKNTEKENVEFFERAAQKKLGNETILK--KDSLFILLPAFT  149
                +  +  ++ P R F+ +N + +    +   +Q+   +E   K  +D L++++PAF 
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  150  MGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKL  209
            +++L+A+F+IGFL+Y+PFI IDLI+SNILLALGM MV+P+TIS+P+KILLF+LV+GW +L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  210  FE  211
            ++
Sbjct  185  LD  186

104) sctR in NC_005126


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  144 bits (528),  Expect = 4e-36, Method: Compositional matrix adjust.
 Identities = 98/195 (51%), Positives = 149/195 (77%), Gaps = 8/195 (4%)

Query  25   VMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAPVGFATQD----YLRQ  80
            ++ T+FLK+A+V+ + RNA+GVQQ PPNMA+YG+A+  T+++MAPV F+  +     L +
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPV-FSEMGDRVKKLPE  60

Query  81   NEVSFSNAQSVDKFVEEGLTPYRNFLKQHIKPSERTFFIDSTRQIWPSQYADRLEPDSLL  140
            +  +F+  +S +K V E   P R F+ +++ P  +T ++++T+++WP + AD+   D LL
Sbjct  61   HLDTFAAMESAGKHVVE---PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  141  ILLPAFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvl  200
            +++PAF +SEL  +F+IGFL+Y+PFI IDLI+SNILLA+GM MV+PMTISLP+K+LLFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  201  lDGWTRLTHGLVISY  215
            +DGWTRL +GL  SY
Sbjct  178  VDGWTRLLDGLFYSY  192

105) pscR in NC_017548


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  143 bits (527),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 94/191 (50%), Positives = 145/191 (76%), Gaps = 0/191 (0%)

Query  25   VMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLRNHDVS  84
            ++ T+F+K+++V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D +++    
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSLLILLP  144
            L   A++E    + + P R F+ R+++   +T ++E+T+++WP E A++   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFI IDLI+SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  ARLTHGLVISY  215
            +RL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

106) pscR in NC_017549


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  143 bits (527),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 94/191 (50%), Positives = 145/191 (76%), Gaps = 0/191 (0%)

Query  25   VMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLRNHDVS  84
            ++ T+F+K+++V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D +++    
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSLLILLP  144
            L   A++E    + + P R F+ R+++   +T ++E+T+++WP E A++   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFI IDLI+SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  ARLTHGLVISY  215
            +RL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

107) pscR in NC_002516


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  143 bits (527),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 94/191 (50%), Positives = 145/191 (76%), Gaps = 0/191 (0%)

Query  25   VMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLRNHDVS  84
            ++ T+F+K+++V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D +++    
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSLLILLP  144
            L   A++E    + + P R F+ R+++   +T ++E+T+++WP E A++   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFI IDLI+SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  ARLTHGLVISY  215
            +RL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

108) ssaR in NC_021577


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  143 bits (527),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 94/191 (50%), Positives = 145/191 (76%), Gaps = 0/191 (0%)

Query  25   VMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLRNHDVS  84
            ++ T+F+K+++V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D +++    
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSLLILLP  144
            L   A++E    + + P R F+ R+++   +T ++E+T+++WP E A++   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFI IDLI+SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  ARLTHGLVISY  215
            +RL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

109) pscR in NC_008463


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  143 bits (527),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 94/191 (50%), Positives = 145/191 (76%), Gaps = 0/191 (0%)

Query  25   VMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLRNHDVS  84
            ++ T+F+K+++V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D +++    
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSLLILLP  144
            L   A++E    + + P R F+ R+++   +T ++E+T+++WP E A++   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFI IDLI+SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  ARLTHGLVISY  215
            +RL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

110) G655_16715 in NC_020912


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  143 bits (526),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 94/191 (50%), Positives = 145/191 (76%), Gaps = 0/191 (0%)

Query  25   VMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLRNHDVS  84
            ++ T+F+K+++V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D +++    
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSLLILLP  144
            L   A++E    + + P R F+ R+++   +T ++E+T+++WP E A++   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFI IDLI+SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  ARLTHGLVISY  215
            +RL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

111) escR in NC_013716


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  143 bits (525),  Expect = 7e-36, Method: Compositional matrix adjust.
 Identities = 80/184 (44%), Positives = 138/184 (75%), Gaps = 6/184 (3%)

Query  32   TSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTIFIMSPIILQINDNISQEPINYTD  91
            T+FLKI++VL I +NA+G+QQ PPNMAL +++L  T+FIM+P++ ++ D + + P +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  92   SDFYQKVDGKIISPYRIFLENNTNKE-NIDFFENVAK---KKLGNETSLKKDSLFILLPA  147
                +  +  ++ P R F+  N + + + +++EN  +   K +++ +S  +D L++++PA
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKAS--RDDLLLVVPA  122

Query  148  FTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILIGGWQ  207
            F +++L+A+F+IGFL+Y+PFI IDLI+SNILLALGM MV+P+TIS+P+KILLF+L++GW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  208  KLFE  211
            +L++
Sbjct  183  RLLD  186

112) pscR in NC_011770


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (523),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 94/190 (50%), Positives = 144/190 (76%), Gaps = 0/190 (0%)

Query  26   MATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLRNHDVSL  85
            + T+F+K+++V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D +++    L
Sbjct  3    ICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL  62

Query  86   SDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSLLILLPA  145
               A++E    + + P R F+ R+++   +T ++E+T+++WP E A++   D LL+++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  146  FTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvllDGWA  205
            F +SEL  +F+IGFLIY+PFI IDLI+SNILLA+GM MV+PMTISLP+K+LLFVL+DGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  206  RLTHGLVISY  215
            RL +GL  SY
Sbjct  183  RLLDGLFYSY  192

113) ssaR in NC_021844


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (522),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 126/181 (70%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      +    +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

114) SBOV14161 in NC_022241


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (522),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 126/181 (70%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      +    +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

115) ssaR in NC_011294


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (522),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 126/181 (70%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      +    +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

116) ssaR in NC_011274


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (522),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 126/181 (70%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      +    +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

117) ssaR in NC_022221


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (522),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 126/181 (70%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      +    +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

118) ssaR in NC_016831


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (522),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 126/181 (70%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      +    +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

119) epaP in NC_011080


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (522),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 126/181 (70%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      +    +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

120) SN31241_24890 in NC_021902


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (522),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 126/181 (70%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      +    +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

121) ssaR in NC_021984


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (522),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 126/181 (70%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      +    +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

122) yscR in NC_003198


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (522),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

123) STBHUCCB_13770 in NC_016832


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (522),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

124) TY21A_06540 in NC_021176


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (522),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

125) yscR in NC_004631


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (522),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

126) ascR in NC_009350


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (521),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 91/191 (48%), Positives = 143/191 (75%), Gaps = 0/191 (0%)

Query  25   VMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVMAPVGFATQDYLRQNEVS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMA+YG+A+  ++++MAPV     D +++    
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LAKSESVEKFLDEGIAPYRDFLKKQIKPREHAFFIDSTKQLWPSKYADRLEPDSLLILLP  144
            L    ++E    + + P R F+ +++ P  ++ ++++T+++WP   AD+   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFI IDLI+SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  ARLTHGLVISY  215
            +RL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

127) ssaR in NC_021820


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

128) epaP in NC_011149


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (523),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

129) ssaR in NC_006905


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

130) ssaR in NC_021818


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

131) epaP in NC_011205


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

132) SEEH1578_16330 in NC_021810


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

133) SU5_02035 in NC_017623


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

134) ssaR in NC_021812


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

135) epaP in NC_011083


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

136) CFSAN001992_04495 in NC_020307


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

137) SSPA1332 in NC_011147


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

138) yscR in NC_006511


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

139) SPAB_01906 in NC_010102


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

140) yscR in NC_012125


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

141) epaP in NC_011094


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

142) ssaR in NC_016856


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

143) yscR in NC_017046


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

144) STMMW_14241 in NC_016854


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

145) ssaR in NC_003197


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

146) yscR in NC_016810


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

147) ssaR in NC_016857


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

148) STMDT12_C14350 in NC_016860


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

149) STU288_03415 in NC_021151


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

150) ssaR in NC_016863


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

151) ssaR in NC_021814


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  142 bits (524),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   GAPFWTSEWDSK-ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F + E  +K  + P R F+ +N +      + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

152) SARI_01563 in NC_010067


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  141 bits (520),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 81/181 (45%), Positives = 127/181 (71%), Gaps = 1/181 (0%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVA  84
            ++ T+FLK+A+V+ I RNA+G+QQ PPN+ALYG+AL  +LFIM+P +  + +R   +   
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   DAPFWMSEWDSK-ALAPYRQFLQKNSEEKEASYFRNLIKRTWPEDIKRKIKPDSLLILIP  143
               F   E  +K  + P R F+ +N +    + + +  +R WP ++  K   D LL+++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203
            AF +S+L  +F+IG+LIY+PF+ IDL++SNILLA+GM MV+PMTISLP+K+L+F+L +GW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  204  D  204
             
Sbjct  182  T  182

153) STAUR_6328 in NC_014623


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  141 bits (518),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 80/188 (43%), Positives = 140/188 (75%), Gaps = 0/188 (0%)

Query  18   TSFSKIAVVLSLARSAMGTQQAPPTVVLTGLAAVLSAHIMSPVMARMYEVGREAARDAES  77
            T+F KIA+VL ++R+A+G QQAPP + L G+A   +  IM+PV + M +  +  + + ++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  78   GAQILAAVERTAEPLRAFLVKHGSAEERSRFVELARELRPPEEATQVQEGDLFVVVPAFV  137
             A + +A  +  EPLR+F+ ++  ++ +++++E ++ ++P E A +   +DL++VVPAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  138  ITELKEAFQMGFLLFLPFLVLDMVIANILLALGMQSLSPSQVSLPFKILLFVTVDGWPLL  197
            ++EL+ +FQ+GFL+++PF+V+D++++NILLALGMQ ++P  +SLP+KILLFV VDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  198  AQGLIQGY  205
             +GL+ +Y
Sbjct  185  LDGLFYSY  192

154) sctR in NC_014718


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  141 bits (519),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 78/191 (41%), Positives = 134/191 (71%), Gaps = 0/191 (0%)

Query  39   VVITSYTKIVVVLSLLRNALGAQQVPPNMVLNGIAILVSLYIMAPIGMAAAKQLENQPNA  98
            ++ T++ KI +VL + RNA+G QQ PPNM L GIA+  +L+IMAP+    + ++ + P+ 
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  99   GTPSQSVVQAFSAAQEPFRAFLKQHANKREKRFFMRTATVIWPKEVADGLREDDFIVLAP  158
                 ++  A     EP+R+F+ ++ +   +  ++  +  +WPKE+AD    DD++++ P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  159  AFTLSELTDAFKIGFLLYITFVVIDLIIANVLLAMGLNQVMPTNVAIPFKLLLFVVMDGW  218
            AF LSEL  +F+IGFL+YI F+VIDLI++N+LLA+G++ V P  +++P+K+LLFV++DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  219  STLIHGLILTY  229
            + L++GL+ +Y
Sbjct  182  TRLLDGLFYSY  192

155) yscR in NC_008791


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  141 bits (517),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 92/191 (49%), Positives = 147/191 (77%), Gaps = 0/191 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D ++     
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
            L  + ++E    + + P R F+ ++++++  + ++++T+++WPK+ AD+   D L++++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFIVIDL++SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TRLTHGLVISY  215
            TRL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

156) YE105_P0026 in NC_015475


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  141 bits (517),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 92/191 (49%), Positives = 147/191 (77%), Gaps = 0/191 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D ++     
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
            L  + ++E    + + P R F+ ++++++  + ++++T+++WPK+ AD+   D L++++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFIVIDL++SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TRLTHGLVISY  215
            TRL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

157) Y11_p0741 in NC_017565


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  141 bits (517),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 92/191 (49%), Positives = 147/191 (77%), Gaps = 0/191 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D ++     
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
            L  + ++E    + + P R F+ ++++++  + ++++T+++WPK+ AD+   D L++++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFIVIDL++SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TRLTHGLVISY  215
            TRL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

158) sctR in NC_012962


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  140 bits (516),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 94/195 (49%), Positives = 148/195 (76%), Gaps = 8/195 (4%)

Query  25   VMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAPVGFATQD----YLRQ  80
            ++ T+FLK+A+V+ + RNA+GVQQ PPNMA+YG+A+  T+++MAPV F+  +     L +
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPV-FSEMGDRVKKLPE  60

Query  81   NEVSFSNAQSVEKFLEEGMAPYRNFLKQHIKSSERTFFIDSTRQIWPSQYANRLEPDSLL  140
            +  +F+  +S  K   + + P R F+ +++ +  +T ++++T+++WP + A++   D LL
Sbjct  61   HLDTFAAMESAGK---HVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  141  ILLPAFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvl  200
            +++PAF +SEL  +F+IGFL+Y+PFI IDLI+SNILLA+GM MV+PMTISLP+K+LLFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  201  lDGWTRLTHGLVISY  215
            +DGWTRL +GL  SY
Sbjct  178  VDGWTRLLDGLFYSY  192

159) yscR in NC_010157


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  140 bits (516),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 92/191 (49%), Positives = 147/191 (77%), Gaps = 0/191 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D ++     
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
            L  + ++E    + + P R F+ ++++++  + ++++T+++WPK+ AD+   D L++++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFIVIDL++SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TRLTHGLVISY  215
            TRL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

160) YPA_CD0018 in NC_008122


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  140 bits (516),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 92/191 (49%), Positives = 147/191 (77%), Gaps = 0/191 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D ++     
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
            L  + ++E    + + P R F+ ++++++  + ++++T+++WPK+ AD+   D L++++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFIVIDL++SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TRLTHGLVISY  215
            TRL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

161) yscR in NC_005813


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  140 bits (516),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 92/191 (49%), Positives = 147/191 (77%), Gaps = 0/191 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D ++     
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
            L  + ++E    + + P R F+ ++++++  + ++++T+++WPK+ AD+   D L++++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFIVIDL++SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TRLTHGLVISY  215
            TRL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

162) yscR in NC_003131


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  140 bits (516),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 92/191 (49%), Positives = 147/191 (77%), Gaps = 0/191 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D ++     
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
            L  + ++E    + + P R F+ ++++++  + ++++T+++WPK+ AD+   D L++++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFIVIDL++SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TRLTHGLVISY  215
            TRL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

163) yscR in NC_017153


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  140 bits (516),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 92/191 (49%), Positives = 147/191 (77%), Gaps = 0/191 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D ++     
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
            L  + ++E    + + P R F+ ++++++  + ++++T+++WPK+ AD+   D L++++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFIVIDL++SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TRLTHGLVISY  215
            TRL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

164) yscR in NC_017157


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  140 bits (516),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 92/191 (49%), Positives = 147/191 (77%), Gaps = 0/191 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D ++     
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
            L  + ++E    + + P R F+ ++++++  + ++++T+++WPK+ AD+   D L++++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFIVIDL++SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TRLTHGLVISY  215
            TRL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

165) YPDSF_3973 in NC_009377


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  140 bits (516),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 92/191 (49%), Positives = 147/191 (77%), Gaps = 0/191 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D ++     
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
            L  + ++E    + + P R F+ ++++++  + ++++T+++WPK+ AD+   D L++++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFIVIDL++SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TRLTHGLVISY  215
            TRL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

166) yscR in NC_014017


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  140 bits (516),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 92/191 (49%), Positives = 147/191 (77%), Gaps = 0/191 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D ++     
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
            L  + ++E    + + P R F+ ++++++  + ++++T+++WPK+ AD+   D L++++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFIVIDL++SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TRLTHGLVISY  215
            TRL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

167) pYV0071 in NC_006153


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  140 bits (516),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 92/191 (49%), Positives = 147/191 (77%), Gaps = 0/191 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D ++     
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
            L  + ++E    + + P R F+ ++++++  + ++++T+++WPK+ AD+   D L++++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFIVIDL++SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TRLTHGLVISY  215
            TRL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

168) YPTS_4289 in NC_010635


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  140 bits (516),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 92/191 (49%), Positives = 147/191 (77%), Gaps = 0/191 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMA+YG+A+  +L++MAPV     D ++     
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
            L  + ++E    + + P R F+ ++++++  + ++++T+++WPK+ AD+   D L++++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFLIY+PFIVIDL++SNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TRLTHGLVISY  215
            TRL +GL  SY
Sbjct  182  TRLLDGLFYSY  192

169) SFHH103_04305 in NC_018294


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  140 bits (515),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 75/179 (42%), Positives = 127/179 (71%), Gaps = 0/179 (0%)

Query  38   LFLVRNALGTQTIPPNIVLYAAALILTMFVSAPIAEQTYDRITDPRLRYQSLDDWAEAAK  97
            L++ RNA+G Q  PPN+ LY+ AL  T+F+ AP+  +  DR+     + +++     A+K
Sbjct  14   LLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDTFAAMESAGK  73

Query  98   AGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRARVTADDFAILVPSFLISELKRAFE  157
               +PL   + +  + + +  +L +T+++WP EM  + + DD+ ++VP+F++SEL+ +F+
Sbjct  74   HVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFVLSELQAGFQ  133

Query  158  IGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDGWSRLMHGLVLSY  216
            IGFL+Y+PFIVIDLIV+ IL+A+GM MV+P  I++P+K++LFV +DGW+RL++GL  SY
Sbjct  134  IGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRLLDGLFYSY  192

170) USDA257_p02850 in NC_018179


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  140 bits (515),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 75/179 (42%), Positives = 127/179 (71%), Gaps = 0/179 (0%)

Query  38   LFLVRNALGTQTIPPNIVLYAAALILTMFVSAPIAEQTYDRITDPRLRYQSLDDWAEAAK  97
            L++ RNA+G Q  PPN+ LY+ AL  T+F+ AP+  +  DR+     + +++     A+K
Sbjct  14   LLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDTFAAMESAGK  73

Query  98   AGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRARVTADDFAILVPSFLISELKRAFE  157
               +PL   + +  + + +  +L +T+++WP EM  + + DD+ ++VP+F++SEL+ +F+
Sbjct  74   HVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFVLSELQAGFQ  133

Query  158  IGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDGWSRLMHGLVLSY  216
            IGFL+Y+PFIVIDLIV+ IL+A+GM MV+P  I++P+K++LFV +DGW+RL++GL  SY
Sbjct  134  IGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRLLDGLFYSY  192

171) PSPPH_2535 in NC_005773


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  140 bits (513),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 137/188 (73%), Gaps = 0/188 (0%)

Query  29   TGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTPLIGDMYREVQGRDLSLQN  88
            T+F+KI++VL++ RNA+GVQQ+PPN+ LYGIAL  ++++ +P++++M   V+     L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  89   VQQLEELGSALCPTLQAHLSKFANESERGFFVQATETIWSPEaradlrdddlvvlIPAFV  148
               +E  G  +   L++ +++  +   +  +++ T+ +W+ E       DDL++++PAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  149  SSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSMVSPTLISIPLKIFLFVALSGWSRL  208
             SEL  +F+IGFL+YIPF+V+DL+VSN+L+A+GM MV+P  IS+PLKI+LFV + GW+RL
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  209  MHGLILSY  216
            ++GL+ SY
Sbjct  185  LDGLFYSY  192

172) bgla_2g02730 in NC_015376


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  140 bits (513),  Expect = 7e-35, Method: Compositional matrix adjust.
 Identities = 80/198 (41%), Positives = 141/198 (72%), Gaps = 14/198 (7%)

Query  25   MVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSIYVMAPIGMQASKALEGQQLA  84
            ++ T++ KI +VL + RNA+GVQQ PPNM L GIA+  ++++MAP+  +      G+++ 
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-----GDRVK  56

Query  85   SQPSQALIQAFGAAK-------EPFRAFLVKHTAEREKRFFLRSAAVVWPKEQAQQLSEN  137
              P +  +++F+A         EP+R+F+ ++     +  +L ++  +WPKE A++ S +
Sbjct  57   KLPEH--LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD  114

Query  138  DLIVLAPSFTLSELTDAFKIGFLLYIAFIVVDLIIANVLLALGLNQVTPTNVAIPFKLLL  197
            DL+++ P+F LSEL  +F+IGFL+YI+FIV+DLI++N+LLALG++ V+P  +++P+K+LL
Sbjct  115  DLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILL  174

Query  198  FVVMDGWSTLIHGLVMTY  215
            FV++DGW+ L++GL  +Y
Sbjct  175  FVLVDGWTRLLDGLFYSY  192

173) fliP1 in NC_017030


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  139 bits (510),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 83/188 (45%), Positives = 145/188 (78%), Gaps = 0/188 (0%)

Query  53   TSFSKIAVVLSLARSAMGTQQAPPtvvltglavvltgHIMAPVMERMYDAGQAAYDEVHS  112
            T+F KIA+VL ++R+A+G QQAPP + L G+A+  T  IMAPV   M D  +   +++++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  113  GAQVLSAAKQVTEPLRAFLMKHGGPEERARFVDLARELRPPEESEQVQETDLFVVIPAFV  172
             A + SA+K+V EPLR+F+ ++ +P+ ++++++ ++ ++P E +++    DL++V+PAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  173  ITELKEAFQIGFIVFLPFLVLDMVIANVLLALGMQTLSPGQVSLPFKILLFVAVDGWALL  232
            ++EL+ +FQIGF++++PF+V+D++++N+LLALGMQ ++P  +SLP+KILLFV VDGW+ L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  233  ARGLILGY  240
              GL+ +Y
Sbjct  185  LDGLFYSY  192

174) rhcR in NC_000914


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  139 bits (509),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 76/179 (43%), Positives = 126/179 (71%), Gaps = 0/179 (0%)

Query  38   LFLVRNALGTQTIPPNIVLYAAALILTMFVSAPVAEQTYDRITDPRLRYQSLDDWAEAAK  97
            L++ RNA+G Q  PPN+ LY+ AL  T+F+ APV  +  DR+     + +++     A+K
Sbjct  14   LLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDTFAAMESAGK  73

Query  98   AGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRAGVTADDFAILVPSFLISELKRAFE  157
               +PL   + +  + + +  +L +T+++WP EM    + DD+ ++VP+F++SEL+ +F+
Sbjct  74   HVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFVLSELQAGFQ  133

Query  158  IGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDGWSRLMHGLVLSY  216
            IGFL+Y+PFIVIDLIV+ IL+A+GM MV+P  I++P+K++LFV +DGW+RL++GL  SY
Sbjct  134  IGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRLLDGLFYSY  192

175) bglu_2g02340 in NC_012721


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  139 bits (512),  Expect = 7e-35, Method: Compositional matrix adjust.
 Identities = 80/198 (41%), Positives = 142/198 (72%), Gaps = 14/198 (7%)

Query  25   MVVTSYAKVVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYVMAPIGMQASKSLEGQQLA  84
            ++ T++ K+ +VL + RNA+GVQQ PPNM L GIA+  +L++MAP+  +      G+++ 
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-----GDRVK  56

Query  85   SQPSQALIQAFGAAR-------EPFRAFLEKHTQEREKRFFLRSAAVVWPKEQAQQLSEH  137
              P +  +++F+A         EP+R+F+ ++ +   +  +L ++  +WPKE A++ S +
Sbjct  57   KLPEH--LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD  114

Query  138  DLIVLAPSFTLSELTDAFKIGFLLYIAFIVVDLIIANVLLALGLNQVTPTNVAIPFKLLL  197
            DL+++ P+F LSEL  +F+IGFL+YI+FIV+DLI++N+LLALG++ V+P  +++P+K+LL
Sbjct  115  DLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILL  174

Query  198  FVVMDGWSTLIHGLVMTY  215
            FV++DGW+ L++GL  +Y
Sbjct  175  FVLVDGWTRLLDGLFYSY  192

176) LILAB_35715 in NC_015711


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  139 bits (512),  Expect = 8e-35, Method: Compositional matrix adjust.
 Identities = 84/190 (45%), Positives = 139/190 (74%), Gaps = 2/190 (1%)

Query  53   TSFSKIAVVLSLARSAMGTQQAPPTIVLTGLAAVLTGHIMAPVMERMYEAGQVAYTQVAS  112
            T+F KIA+VL ++R+A+G QQAPP + L G+A   T  IMAPV   M  +++V       
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM--GDRVKKLPEHL  62

Query  113  GSGAEMLSAASRVSEPLRAFLVKHGSPEERARFVDLARELRPVEELESVRETDLFVVIPA  172
            ++ A M SA+ +V EPLR+F+ ++  P+ ++++++ ++ ++P E  +     DL++V+PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  173  FVITELKEAFQIGFLVFLPFLVLDMVIANVLLALGMQTLSPSQVSLPFKILLFVAVDGWS  232
            FV++EL+ +FQIGFL+++PF+V+D++++N+LLALGMQ ++P  +SLP+KILLFV VDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  233  LLARGLILGY  242
             L  GL+ +Y
Sbjct  183  RLLDGLFYSY  192

177) STAUR_3046 in NC_014623


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  138 bits (506),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 85/200 (43%), Positives = 144/200 (72%), Gaps = 7/200 (3%)

Query  78   LMMVTSFVKISVVLSIVRSALGTQQIPPTQVITGLAVILTVYIMAPVGQEMYKAAKVDIW  137
            +++ T+F+KI++VL I R+A+G QQ PP   + G+A+  T++IMAPV  EM  + +V   
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM--GDRVK--  56

Query  138  AKGPSLLSSETVGTLLEAADRSKEPLRDFLVKKVKNKDRALFFHLAKKMRKAEDRKDIGD  197
             K P  L  +T +++  A+ +  EPLR F+ +++    ++ +++ +++M+  E     + 
Sbjct  57   -KLPEHL--DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASR  113

Query  198  RDFMIIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTTISMPFKLL  257
             D+++++PAFV+SEL+ +FQIGFL+++PFIVID++V+NILLALGM+M++P TIS+P+K+L
Sbjct  114  DDLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKIL  173

Query  258  LFVLVDGWYLIAKGLVVGYL  277
            LFVLVDGW  +  GL  +Y+
Sbjct  174  LFVLVDGWTRLLDGLFYSYM  193

178) SG1305 in NC_007712


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  137 bits (505),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 89/188 (48%), Positives = 128/188 (69%), Gaps = 1/188 (0%)

Query  28   TSFLKLAVVLSILRNALGIQQVPPNMALYGLALILSLFIMAPTALAVKAQWHPVAAPGDT  87
            T+FLK+A+VL I RNA+G+QQ PPNMALYG+AL  +LFIMAP    +  +   ++   DT
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  88   PWASGWDGKALM-PYRQFLRRNADEKEIRYFHQLVTKTWPEEARRRVRPDSLLILLPAFT  146
              A    GK ++ P R F+ RN D      + +   + WP E   +   D LL+++PAF 
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  147  VSQLSQAFRIGLLIYLPFLAIDLLVSNVLLAMGMMMVSPMTISLPFKLLIFMLAGGWDLI  206
            +S+L  +F+IG+LIY+PF+ IDL+VSN+LLA+GM MV+PMTISLP+K+L+F+L +GW  +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  207  LSQLVQSF  214
            L  L  S+
Sbjct  185  LDGLFYSY  192

179) NT01EI_0960 in NC_012779


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  137 bits (505),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 85/192 (45%), Positives = 142/192 (74%), Gaps = 1/192 (0%)

Query  24   IVMGTSFLKLSVVFALLRNALGIQQIPPNlalyglaliltlFIMTPVGTAVQARLADAPA  83
            +++ T+FLK+++V+ + RNA+G+QQ PPN+ALYG+AL  TLFIM+PV + +  R+   P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  84   QAQT-TLLSRLSDNTLDPYRQFLRQHTSAKQLKFFRQVATKSWPASVREKISDNSLLLLM  142
            + +T + +   + + ++P R F+ ++  +     + + + + WP  + +K S + LLL++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  143  PAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVGG  202
            PAF +S+L  +FQIG+L+++PFI IDLIVSNILLA+GM MV+PMTIS+P+K+L+F+LV+G
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  203  WDKILGQLLLSY  214
            W ++L+ L+ SY
Sbjct  181  WTRLLDGLFYSY  192

180) MXAN_5647 in NC_008095


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  137 bits (505),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 84/190 (45%), Positives = 139/190 (74%), Gaps = 2/190 (1%)

Query  28   TSFSKIAVVLSLARSAMGTQQAPPTIVLTGLAAVLTGHIMAPVMERMYDAGQVAYAEVAS  87
            T+F KIA+VL ++R+A+G QQAPP + L G+A   T  IMAPV   M  +++V       
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM--GDRVKKLPEHL  62

Query  88   GSGAEMLSAASRVSEPLRAFLIKHGSAEERARFVDLARELRPVEEMDAVRETDLFIVIPA  147
            ++ A M SA+ +V EPLR+F+ ++  ++ ++++++ ++ ++P E  D     DL++V+PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  148  FVITELKEAFQIGFLVFLPFLVLDMVIANVLLALGMQTLSPSQVSLPFKILLFVAVDGWS  207
            FV++EL+ +FQIGFL+++PF+V+D++++N+LLALGMQ ++P  +SLP+KILLFV VDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  208  LLARGLILGY  217
             L  GL+ +Y
Sbjct  183  RLLDGLFYSY  192

181) ssaR in NC_012751


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  136 bits (500),  Expect = 7e-34, Method: Compositional matrix adjust.
 Identities = 89/190 (47%), Positives = 142/190 (75%), Gaps = 4/190 (2%)

Query  24   VVMGTCFLKLSVVFSLLRNALGVQQTPPNIAIYGLALVLTIFIMAPVGLEVNESLKGEKL  83
            +++ T FLK+++V+ + RNA+GVQQ+PPN+A+YG+AL  T+FIMAPV  E+ + +K  KL
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVK--KL  58

Query  84   SQDFGTF--VEQINSKALDPYRQFLLHNTSSEQINFFSDMIKNNWPKKYRDKVASDSLLI  141
            +++++TF  +E      ++P R F+ +N  ++    + +  +  WPK   DK + D LL+
Sbjct  59   PEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  142  LMPAFTVSQLIEAFKIGLLLYLPFVAIDLIVSNILLAmgmmmmspmTISLPFKILIFLLV  201
            ++PAF +S+L  +F+IG+L+Y+PF+ IDLIVSNILLA+GM M++PMTISLP+KIL+F+LV
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  202  GGWDMILGQL  211
            +GW  +L+ L
Sbjct  179  DGWTRLLDGL  188

182) fliP in NC_017030


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  136 bits (500),  Expect = 8e-34, Method: Compositional matrix adjust.
 Identities = 84/200 (42%), Positives = 140/200 (70%), Gaps = 7/200 (3%)

Query  75   LMMVTSFVKISVVLSIVRSALGTQQIPPTQVITGLAIILTVYIMAPVGQEMYRAGGIDIW  134
            +++ T+F+KI++VL I R+A+G QQ PP   + G+A+  T++IMAPV  EM  ++ +   
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM--GDRVKKL  58

Query  135  SRGTSVFSSETVGTMLGAADKSKEPLREFLMKKVTNKDRTLFYSLAKKMRKEEDRKDIGP  194
            +     F     ++M +A+    EPLR F+ +++    +T +   +++M+  E     + 
Sbjct  59   PEHLDTF-----AAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASR  113

Query  195  NDFMVIVPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTTISMPFKLL  254
            +D++++VPAFV+SEL+ +FQIGFL+++PFIVID++V+NILLALGM+M++P TIS+P+K+L
Sbjct  114  DDLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKIL  173

Query  255  LFVLVDGWYLIAKGLVIGYL  274
            LFVLVDGW  +  GL  +Y+
Sbjct  174  LFVLVDGWTRLLDGLFYSYM  193

183) hrcR in NC_006834


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  135 bits (494),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 132/194 (69%), Gaps = 13/194 (6%)

Query  39   TSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPV----GMEAFKAAQN---  91
            T++ KI +VL + RNAIGVQQ PPNM L G+AL  + F+MAPV    G    K +++   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  92   YGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKSDDLLI  151
            ++A    ++ VV      EP+R F+ ++     ++ ++ ++Q++WPK+ A     DDLL+
Sbjct  65   FAAMESAGKHVV------EPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  152  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  211
            + PAF LSEL  +F+IGFL+Y+ FIVIDL+V+N L+A+G+  V+P  +++P+K+LLFV +
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  212  DGWSMLIHGLVLSY  225
            DGW+ L++GL  SY
Sbjct  179  DGWTRLLDGLFYSY  192

184) MXAN_2447 in NC_008095


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  135 bits (494),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 83/200 (42%), Positives = 143/200 (72%), Gaps = 7/200 (3%)

Query  32   LMMATSFVKISVVLSIVRSALGTQQIPPTQVITGLAIILTVYIMAPVGQQMYRAAGLDIW  91
            +++ T+F+KI++VL I R+A+G QQ PP   + G+A+  T++IMAPV    +   G  + 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPV----FSEMGDRV-  55

Query  92   AKGPGVFSSETVGSMLGAANKSKEPLREWLIKKVTTKDRALFFNLAKKMRKGEDRDAVES  151
             K P  +  +T ++M +A++   EPLR  + +++    ++ +++ +++M+  E  D    
Sbjct  56   KKLPEHL--DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASR  113

Query  152  NDFMVIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTTISMPFKLL  211
            +D+++++PAFV+SEL+ +FQIGFL+++PFIVID++V+NILLALGM+M++P TIS+P+K+L
Sbjct  114  DDLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKIL  173

Query  212  LFVLVDGWYLIAKGLVVGYL  231
            LFVLVDGW  +  GL  +Y+
Sbjct  174  LFVLVDGWTRLLDGLFYSYM  193

185) hrcR in NC_003919


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  134 bits (491),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 132/194 (69%), Gaps = 13/194 (6%)

Query  27   TSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPV----GMEAFKAAQN---  79
            T++ KI +VL + RNAIGVQQ PPNM L G+AL  + F+MAPV    G    K +++   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  80   YGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLLV  139
            ++A    ++ VV      EP+R F+ ++     ++ ++ ++Q++WPK+ A     DDLL+
Sbjct  65   FAAMESAGKHVV------EPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  199
            + PAF LSEL  +F+IGFL+Y+ FIVIDL+V+N L+A+G+  V+P  +++P+K+LLFV +
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  200  DGWSMLIHGLVLSY  213
            DGW+ L++GL  SY
Sbjct  179  DGWTRLLDGLFYSY  192

186) hrcR in NC_016010


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  134 bits (491),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 132/194 (69%), Gaps = 13/194 (6%)

Query  27   TSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPV----GMEAFKAAQN---  79
            T++ KI +VL + RNAIGVQQ PPNM L G+AL  + F+MAPV    G    K +++   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  80   YGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLLV  139
            ++A    ++ VV      EP+R F+ ++     ++ ++ ++Q++WPK+ A     DDLL+
Sbjct  65   FAAMESAGKHVV------EPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  199
            + PAF LSEL  +F+IGFL+Y+ FIVIDL+V+N L+A+G+  V+P  +++P+K+LLFV +
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  200  DGWSMLIHGLVLSY  213
            DGW+ L++GL  SY
Sbjct  179  DGWTRLLDGLFYSY  192

187) XAC29_02060 in NC_020800


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  134 bits (491),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 132/194 (69%), Gaps = 13/194 (6%)

Query  27   TSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPV----GMEAFKAAQN---  79
            T++ KI +VL + RNAIGVQQ PPNM L G+AL  + F+MAPV    G    K +++   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  80   YGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLLV  139
            ++A    ++ VV      EP+R F+ ++     ++ ++ ++Q++WPK+ A     DDLL+
Sbjct  65   FAAMESAGKHVV------EPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  199
            + PAF LSEL  +F+IGFL+Y+ FIVIDL+V+N L+A+G+  V+P  +++P+K+LLFV +
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  200  DGWSMLIHGLVLSY  213
            DGW+ L++GL  SY
Sbjct  179  DGWTRLLDGLFYSY  192

188) XC_3016 in NC_007086


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  134 bits (492),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 133/194 (69%), Gaps = 13/194 (6%)

Query  27   TSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPV----GMEAFKAAQN---  79
            T++ KI +VL + RNAIGVQQ PPNM L G+AL  + F+MAPV    G    K +++   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  80   YSPGADNSRVVVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPDDLLV  139
            +++    ++ VV      EP+R F+ ++     ++ ++ ++Q++WPK+ AD    DDLL+
Sbjct  65   FAAMESAGKHVV------EPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAL  199
            + PAF LSEL  +F+IGFL+Y+ FIVIDL+V+N L+A+G+  V+P  +++P+K+LLFV +
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  200  DGWSMLIHGLVLSY  213
            DGW+ L++GL  SY
Sbjct  179  DGWTRLLDGLFYSY  192

189) hrcR in NC_003902


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  134 bits (492),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 133/194 (69%), Gaps = 13/194 (6%)

Query  27   TSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPV----GMEAFKAAQN---  79
            T++ KI +VL + RNAIGVQQ PPNM L G+AL  + F+MAPV    G    K +++   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  80   YSPGADNSRVVVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPDDLLV  139
            +++    ++ VV      EP+R F+ ++     ++ ++ ++Q++WPK+ AD    DDLL+
Sbjct  65   FAAMESAGKHVV------EPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAL  199
            + PAF LSEL  +F+IGFL+Y+ FIVIDL+V+N L+A+G+  V+P  +++P+K+LLFV +
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  200  DGWSMLIHGLVLSY  213
            DGW+ L++GL  SY
Sbjct  179  DGWTRLLDGLFYSY  192

190) hrcR in NC_017271


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  134 bits (492),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 133/194 (69%), Gaps = 13/194 (6%)

Query  27   TSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPV----GMEAFKAAQN---  79
            T++ KI +VL + RNAIGVQQ PPNM L G+AL  + F+MAPV    G    K +++   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  80   YSPGAENSRVVVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPDDLLV  139
            +++    ++ VV      EP+R F+ ++     ++ ++ ++Q++WPK+ AD    DDLL+
Sbjct  65   FAAMESAGKHVV------EPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAL  199
            + PAF LSEL  +F+IGFL+Y+ FIVIDL+V+N L+A+G+  V+P  +++P+K+LLFV +
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  200  DGWSMLIHGLVLSY  213
            DGW+ L++GL  SY
Sbjct  179  DGWTRLLDGLFYSY  192

191) xccb100_3079 in NC_010688


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  134 bits (492),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 133/194 (69%), Gaps = 13/194 (6%)

Query  27   TSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPV----GMEAFKAAQN---  79
            T++ KI +VL + RNAIGVQQ PPNM L G+AL  + F+MAPV    G    K +++   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  80   YSPGADNSRVVVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPDDLLV  139
            +++    ++ VV      EP+R F+ ++     ++ ++ ++Q++WPK+ AD    DDLL+
Sbjct  65   FAAMESAGKHVV------EPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAL  199
            + PAF LSEL  +F+IGFL+Y+ FIVIDL+V+N L+A+G+  V+P  +++P+K+LLFV +
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  200  DGWSMLIHGLVLSY  213
            DGW+ L++GL  SY
Sbjct  179  DGWTRLLDGLFYSY  192

192) hrcR in NC_007508


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  134 bits (491),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 132/194 (69%), Gaps = 13/194 (6%)

Query  27   TSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPV----GMEAFKAAQN---  79
            T++ KI +VL + RNAIGVQQ PPNM L G+AL  + F+MAPV    G    K +++   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  80   YGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLLV  139
            ++A    ++ VV      EP+R F+ ++     ++ ++ ++Q++WPK+ A     DDLL+
Sbjct  65   FAAMESAGKHVV------EPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  199
            + PAF LSEL  +F+IGFL+Y+ FIVIDL+V+N L+A+G+  V+P  +++P+K+LLFV +
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  200  DGWSMLIHGLVLSY  213
            DGW+ L++GL  SY
Sbjct  179  DGWTRLLDGLFYSY  192

193) hrcR in NC_020815


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  134 bits (491),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 132/194 (69%), Gaps = 13/194 (6%)

Query  27   TSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPV----GMEAFKAAQN---  79
            T++ KI +VL + RNAIGVQQ PPNM L G+AL  + F+MAPV    G    K +++   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  80   YGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLLV  139
            ++A    ++ VV      EP+R F+ ++     ++ ++ ++Q++WPK+ A     DDLL+
Sbjct  65   FAAMESAGKHVV------EPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  199
            + PAF LSEL  +F+IGFL+Y+ FIVIDL+V+N L+A+G+  V+P  +++P+K+LLFV +
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  200  DGWSMLIHGLVLSY  213
            DGW+ L++GL  SY
Sbjct  179  DGWTRLLDGLFYSY  192

194) XOO_0095 in NC_007705


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  134 bits (492),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 132/194 (69%), Gaps = 13/194 (6%)

Query  27   TSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPV----GMEAFKAAQN---  79
            T++ KI +VL + RNAIGVQQ PPNM L G+AL  + F+MAPV    G    K +++   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  80   YGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKSDDLLI  139
            ++A    ++ VV      EP+R F+ ++     ++ ++ ++Q++WPK+ A     DDLL+
Sbjct  65   FAAMESAGKHVV------EPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  199
            + PAF LSEL  +F+IGFL+Y+ FIVIDL+V+N L+A+G+  V+P  +++P+K+LLFV +
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  200  DGWSMLIHGLVLSY  213
            DGW+ L++GL  SY
Sbjct  179  DGWTRLLDGLFYSY  192

195) epaP in NC_010717


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  134 bits (492),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 132/194 (69%), Gaps = 13/194 (6%)

Query  27   TSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPV----GMEAFKAAQN---  79
            T++ KI +VL + RNAIGVQQ PPNM L G+AL  + F+MAPV    G    K +++   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  80   YGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKSDDLLI  139
            ++A    ++ VV      EP+R F+ ++     ++ ++ ++Q++WPK+ A     DDLL+
Sbjct  65   FAAMESAGKHVV------EPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  199
            + PAF LSEL  +F+IGFL+Y+ FIVIDL+V+N L+A+G+  V+P  +++P+K+LLFV +
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  200  DGWSMLIHGLVLSY  213
            DGW+ L++GL  SY
Sbjct  179  DGWTRLLDGLFYSY  192

196) hrcR in NC_017267


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  134 bits (490),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 132/194 (69%), Gaps = 13/194 (6%)

Query  27   TSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPV----GMEAFKAAQN---  79
            T++ KI +VL + RNAIGVQQ PPNM L G+AL  + F+MAPV    G    K +++   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  80   YGAGSDNSRIVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLLI  139
            ++A    ++ VV      EP+R F+ ++     ++ ++ ++Q++WPK+ A     DDLL+
Sbjct  65   FAAMESAGKHVV------EPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  199
            + PAF LSEL  +F+IGFL+Y+ FIVIDL+V+N L+A+G+  V+P  +++P+K+LLFV +
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  200  DGWSILIHGLVLSY  213
            DGW+ L++GL  SY
Sbjct  179  DGWTRLLDGLFYSY  192

197) Meso_0110 in NC_008254


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  134 bits (490),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 81/195 (42%), Positives = 143/195 (74%), Gaps = 6/195 (3%)

Query  27   VVMGTAFTKISIVLMLLRNAIGVQQAPSGLVINSIALTLTVFVMVPVGNAIITQVQQ--Q  84
            +++ TAF KI++VL++ RNAIGVQQAP+ + + +IAL+ T+F+M PV + +  +V++  +
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  85   QLG-FTGWENVSQLYSVVSEAFTGYLKQFSSPRELQFFMDAARKMWPETLHGQITTDNVF  143
            +L+ F++ E+ ++    V E++  ++ +   P     +++ +++MWP  + ++ + D+++
Sbjct  61   HLDTFAAMESAGK---HVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  144  ILLPAHVTSELTRAFQIAFLIFLPFVVVDMVVSNILLAMGAMMVPPMLVSLPIKILLFVA  203
            +++PA V SEL  +FQI+FLI++PF+V+D++VSNILLA+G  MV+PM +SLP+KILLFV 
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  204  ADGWALLLHNLVLSY  218
             DGW+ LL+ L  SY
Sbjct  178  VDGWTRLLDGLFYSY  192

198) MYSTI_02838 in NC_020126


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  133 bits (489),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 83/201 (42%), Positives = 143/201 (72%), Gaps = 9/201 (4%)

Query  75   LMMVTSFVKISVVLSIVRSALGTQQIPPTQVITGLAVILTVYIMAPVGTAMYRAAEIDVW  134
            +++ T+F+KI++VL I R+A+G QQ PP   + G+A+  T++IMAPV + M  +  +   
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM--GDRVKKL  58

Query  135  AKGPGVFSSSTVGSLLEGASKSK-EPLRAWLMKKVTVKDRSLFYNLAKKMRTGEDRDSVQ  193
            +   + F++      +E+A+K   EPLR+ + +++    ++ + + +++M+  E  D   
Sbjct  59   PEHLDTFAA------MESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKAS  112

Query  194  SQDFMVIVPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTTISMPFKL  253
             +D++++VPAFV+SEL+ +FQIGFL+++PFIVID++V+NILLALGM+M++P TIS+P+K+
Sbjct  113  RDDLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKI  172

Query  254  LLFVLVDGWYLIAKGLVVGYL  274
            LLFVLVDGW  +  GL  +Y+
Sbjct  173  LLFVLVDGWTRLLDGLFYSYM  193

199) LILAB_19925 in NC_015711


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  133 bits (489),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 143/200 (72%), Gaps = 7/200 (3%)

Query  75   LMMVTSFVKISVVLSIVRSALGTQQIPPTQVITGLAVILTVYIMAPVGTQMYRAAGLDIW  134
            +++ T+F+KI++VL I R+A+G QQ PP   + G+A+  T++IMAPV ++M  +  +   
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM--GDRVKKL  58

Query  135  AKGPGVFSSETVGSMLGAANKSKEPLREWLMKKVTTKDRALFFNLAKKLRQGEDRDAVES  194
            +   + F     ++M +A++   EPLR  + +++    ++ +++ +++++  E  D    
Sbjct  59   PEHLDTF-----AAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASR  113

Query  195  DDFMVIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTTISMPFKLL  254
            DD+++++PAFV+SEL+ +FQIGFL+++PFIVID++V+NILLALGM+M++P TIS+P+K+L
Sbjct  114  DDLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKIL  173

Query  255  LFVLVDGWYLIAKGLVVGYL  274
            LFVLVDGW  +  GL  +Y+
Sbjct  174  LFVLVDGWTRLLDGLFYSYM  193

200) N646_0740 in NC_022349


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  132 bits (484),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 96/191 (51%), Positives = 141/191 (74%), Gaps = 0/191 (0%)

Query  25   MMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQHDIS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMALYG+A+  ++FIMAPV  E  D VK+    
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSlllllP  144
            L+  A++E+     ++P R F+ +++       + + ++ +WP+   D+   D LLL++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFL+Y+PFI IDLIVSNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TKLTHGLVLSY  215
            T+L +GL  SY
Sbjct  182  TRLLDGLFYSY  192

201) VEA_003362 in NC_013456


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  132 bits (484),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 96/191 (51%), Positives = 141/191 (74%), Gaps = 0/191 (0%)

Query  25   MMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQHDIS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMALYG+A+  ++FIMAPV  E  D VK+    
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSlllllP  144
            L+  A++E+     ++P R F+ +++       + + ++ +WP+   D+   D LLL++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFL+Y+PFI IDLIVSNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TKLTHGLVLSY  215
            T+L +GL  SY
Sbjct  182  TRLLDGLFYSY  192

202) VPBB_1532 in NC_019955


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  132 bits (484),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 96/191 (51%), Positives = 141/191 (74%), Gaps = 0/191 (0%)

Query  25   MMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQHDIS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMALYG+A+  ++FIMAPV  E  D VK+    
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSlllllP  144
            L+  A++E+     ++P R F+ +++       + + ++ +WP+   D+   D LLL++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFL+Y+PFI IDLIVSNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TKLTHGLVLSY  215
            T+L +GL  SY
Sbjct  182  TRLLDGLFYSY  192

203) ssaR in NC_021848


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  132 bits (484),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 96/191 (51%), Positives = 141/191 (74%), Gaps = 0/191 (0%)

Query  25   MMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQHDIS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMALYG+A+  ++FIMAPV  E  D VK+    
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSlllllP  144
            L+  A++E+     ++P R F+ +++       + + ++ +WP+   D+   D LLL++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFL+Y+PFI IDLIVSNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TKLTHGLVLSY  215
            T+L +GL  SY
Sbjct  182  TRLLDGLFYSY  192

204) ssaR in NC_021847


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  132 bits (484),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 96/191 (51%), Positives = 141/191 (74%), Gaps = 0/191 (0%)

Query  25   MMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQHDIS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMALYG+A+  ++FIMAPV  E  D VK+    
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSlllllP  144
            L+  A++E+     ++P R F+ +++       + + ++ +WP+   D+   D LLL++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFL+Y+PFI IDLIVSNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TKLTHGLVLSY  215
            T+L +GL  SY
Sbjct  182  TRLLDGLFYSY  192

205) VP1672 in NC_004603


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  132 bits (484),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 96/191 (51%), Positives = 141/191 (74%), Gaps = 0/191 (0%)

Query  25   MMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQHDIS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMALYG+A+  ++FIMAPV  E  D VK+    
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSlllllP  144
            L+  A++E+     ++P R F+ +++       + + ++ +WP+   D+   D LLL++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFL+Y+PFI IDLIVSNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TKLTHGLVLSY  215
            T+L +GL  SY
Sbjct  182  TRLLDGLFYSY  192

206) MYSTI_06240 in NC_020126


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  132 bits (484),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 87/191 (46%), Positives = 145/191 (76%), Gaps = 4/191 (2%)

Query  48   TSFSKIAVVLSLARSAMGTQQAPPtvvltglavvltgHIMASVMERMYDAGQLAYQEMET  107
            T+F KIA+VL ++R+A+G QQAPP + L G+A+  T  IMA+V   M D  +   ++++T
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  108  GSGTKILESAAK-VAEPLRTFLVKHGSAEERARFVDLARELRPPEEADTVSETDLFVVIP  166
             ++   +ESA+K V EPLRTF+ ++  ++ ++++++ ++ ++P E AD  S  DL++V+P
Sbjct  65   FAA---MESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  167  AFVITELKEAFQIGFLVFLPFLVLDMVIANVLLALGMQTLSPSQVSLPFKILLFVAVDGW  226
            AFV++EL+ +FQIGFL+++PF+V+D++++N+LLALGMQ ++P  +SLP+KILLFV VDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  227  SLLARGLILGY  237
            + L  GL+ +Y
Sbjct  182  TRLLDGLFYSY  192

207) JCM7686_1775 in NC_022041


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  132 bits (486),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 86/195 (45%), Positives = 138/195 (71%), Gaps = 11/195 (5%)

Query  25   TAFVKIAVVLFLVRSALGVQQTPPNLVLYGVTIVLTGYVMSPVLAASFAEMTNGGQMDAL  84
            TAF+KIA+VL++ R+A+GVQQ+PPN+ LYG+++  T ++M+PV    F+EM  G+++  L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPV----FSEM--GDRVKKL  58

Query  85   PPP-SEWPGLIQRG---LGPVREFLMRFTTPVDRAFFLSAAEEM-HKTSGVVPSEQDLFI  139
            P      +++   G   + P+R F+ R   P  ++ +L  ++ M  K  +  +S +DL++
Sbjct  59   PEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  140  LAPAFVTAELTRAFEIGVMLYLPFIVVDLVITNILTAMGMMMVSPTVISLPFKLLLFVAV  199
            + PAFV +EL  +F+IG ++Y+PFIV+DL+++NIL A+GM MV+P  ISLP+K+LLFV V
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  200  DGWARLTHGLVMSYV  214
            DGW+RL +GL  SY+
Sbjct  179  DGWTRLLDGLFYSYM  193

208) spaP in NC_017731


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  132 bits (486),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 81/193 (42%), Positives = 140/193 (73%), Gaps = 8/193 (4%)

Query  19   TCYLKISIVLIMVRNAMGVQQVPSTMALNGIAMLLSLFVMMPVVQDISHYMRE--EKVD-  75
            T +LKI++VL++ RNA+GVQQ P+ MAL GIA+  +LF+M PV  ++++ ++   E +D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  76   FGNVESVDNFVDGGLGRYKAYLQKYSDPEL-VQFFESVQQQRNEEPMDAEAHSATLFSLL  134
            F+ +ES ++ V   L   ++++ +  DP++  +++E+ Q+ +  E M   A    L+ ++
Sbjct  65   FAAMESAGKHVVEPL---RTFMTRNLDPDIQTHLLENTQRMWPKE-MADKASRDDLLLVV  120

Query  135  PAYALSEVKSAFEIGFYIYLPFVVIDLVISSILLALGMMMMSPVTISVPVKLILFVAIDG  194
            PA+ LSE++++F+IGF IY+PF+VIDL++S+ILLALGM M++P+TIS+P+K++LFV +DG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  195  WSLISKGLVMQYL  207
            W+ +  GL   Y+
Sbjct  181  WTRLLDGLFYSYM  193

209) hrcR in NC_015856


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 77/190 (41%), Positives = 131/190 (69%), Gaps = 5/190 (2%)

Query  28   TSYTKIVVVLGLLRNALGLQQVPPTSVLNGVAIIISCFVMAPVGMEAVKHAQLSSEQTAG  87
            T++ KI +VL + RNA+G+QQ PP   L G+A+  + F+MAPV  E   + +  +E+   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  88   SQIMPLFDAAR---EPFRTFLRKHTSEREKAFFMRSARQIWPPERAAELKPDDLIVLAPA  144
               M    A++   EP+RTF+ ++     ++ ++ +++++WP E A     DDL+++ PA
Sbjct  65   FAAME--SAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  145  FVLSELTAAFKIGFLLYLCFIVIDLVIANVLMALGLSQVNPSNVAIPFKLLLFISLDGWS  204
            FVLSEL A+F+IGFL+Y+ FIVIDL+++N+L+ALG+  V P  +++P+K+LLF+ +DGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  205  TLVHGLISTY  214
             L++GL+ +Y
Sbjct  183  RLLDGLFYSY  192

210) M892_04535 in NC_022269


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  130 bits (477),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 94/191 (50%), Positives = 139/191 (73%), Gaps = 0/191 (0%)

Query  25   MMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVTQHEIS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMALYG+A+  ++FIMAPV  E  D V +    
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWPQKYVDRLESDSlllllP  144
            L+   ++E+     ++P R F+ +++       + + ++ +WP+   D+   D LLL++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFL+Y+PFI IDLIVSNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TKLTHGLVLSY  215
            T+L +GL  SY
Sbjct  182  TRLLDGLFYSY  192

211) VIBHAR_01726 in NC_009783


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  130 bits (477),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 94/191 (50%), Positives = 139/191 (73%), Gaps = 0/191 (0%)

Query  25   MMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVTQHEIS  84
            ++ T+F+K+A+V+ + RNA+GVQQ PPNMALYG+A+  ++FIMAPV  E  D V +    
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  85   LEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWPQKYVDRLESDSlllllP  144
            L+   ++E+     ++P R F+ +++       + + ++ +WP+   D+   D LLL++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  145  AFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AF +SEL  +F+IGFL+Y+PFI IDLIVSNILLA+GM MV+PMTISLP+K+LLFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  205  TKLTHGLVLSY  215
            T+L +GL  SY
Sbjct  182  TRLLDGLFYSY  192

212) fliP in NC_006370


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  126 bits (463),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 138/188 (74%), Gaps = 6/188 (3%)

Query  56   LLMTTSFTRIIIVLGILRQAMGLQQSPPNRVLVGIALTLSLFIMRPVIYDIHDNAV-VPY  114
            +++ T+F +I +VL I R+A+G+QQ+PPN  L GIAL+ +LFIM PV+ ++ D    +P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  115  QKGEMTMFE-AAKVAEQPLRQFM---LQQTRETDL-EQILRIADEPTPDNVDDLDFLLVM  169
            + +  +  E A+K   +PLR FM   L+   +T+L E+  R+     +D+    D+LLV+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  170  PAFILSELKTAFQIGFMLFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKLMVFVMVDG  229
            PAF+LSEL+++FQIGF+++IPF++ID++V+++L+A+GM M++P+ ISLP+K+++FV+VDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  230  WSMTVGTL  237
            W+  ++ L
Sbjct  181  WTRLLDGL  188

213) fliP in NC_007498


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  126 bits (463),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 145/199 (73%), Gaps = 20/199 (10%)

Query  60   LLMTTAFIRLAVVLSFLRQAMGTQQMPPNQVIIGLSLFLTFFVMSPVFNQIND------Q  113
            +++ TAF+++A+VL + R+A+G QQ PPN  + G++L  T+F+M+PVF+++ D      +
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  114  AVQPYLTQKIDQKQALTLAVEPMRQFMFSQTTESEL-SLLMEISGH------PDPAGKED  166
             ++ + +     K+     VEP+R FM ++  ++++ + L+E + +      +D A+++D
Sbjct  61   HLDTFAAMESAGKHV----VEPLRTFM-TRNLDPDIQTHLLENTQRMWPKEMADKASRDD  115

Query  167  VPTLTLIPAFMLSELKRAFQIGFMIYIPFLVIDMIVASVLMSMGMMMLPPIIISLPFKLL  226
            +  L ++PAF+LSEL+ +FQIGF+IYIPF+VID+IV+++L+++GM M++P+ ISLP+K+L
Sbjct  116  L--LLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKIL  173

Query  227  LFVLVDGWTLIVGSLVQSF  245
            LFVLVDGWT ++++L  S+
Sbjct  174  LFVLVDGWTRLLDGLFYSY  192

214) fliP in NC_008027


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  125 bits (457),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 78/188 (42%), Positives = 135/188 (72%), Gaps = 14/188 (7%)

Query  67   TSFTRIIIVFSILRQALGLQQTPSNQVLTGMALFLTMFIMAPVF----ERVNK--DAIQP  120
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF    +RV+K  + ++ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  121  YLAEQMTAQQAIDKAQGPLKDFM---LAQTRQSDL-DLFMRLSKRTDIAGPDQVPLTILV  176
            + A + ++++ ++    PL+ FM   L    Q++L +   R+  +     + +  L ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  177  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  236
            PAFV SEL+++FQIGF+I+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  237  WALIMGTL  244
            W+ +++ L
Sbjct  181  WTRLLDGL  188

215) fliP in NC_019670


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  124 bits (454),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 81/189 (43%), Positives = 133/189 (71%), Gaps = 8/189 (4%)

Query  66   TSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFIMAPVFDRVNQ--DALQPYLAE  123
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  TLFIMAPVF  + +    L   L +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL-D  63

Query  124  KLTAQDAVAKAQV-PIKNFML----AQTRTSDLELFMRLSKRTDIATPDQAPLTILVPAF  178
             ++A ++ +K  V P++ FM     ++ +T  LE   R+  +     + +  L ++VPAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  179  VTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWAL  238
            V SEL+++FQIGF+I+IPF++IDL+V+++L+A+GM M++P+ ISLP+KI+LFVLVDGW+ 
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  239  IIGTLASSF  247
            +++ L  S+
Sbjct  184  LLDGLFYSY  192

216) fliP in NC_015425


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  124 bits (453),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 81/192 (43%), Positives = 135/192 (71%), Gaps = 13/192 (6%)

Query  73   TSFTRIIIVLGFMRNALGTQQAPPNQILIGIALFLTIFIMAPTYKTINKEAIKPFLENKI  132
            T+F +I +VL + RNA+G QQAPPN  L GIAL  T+FIMAP +  +     K  L + +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  133  TGQQAMDNASK----PMREFMLKQ-TRDKDLELFLDV----SKTDKTKITKDNVPMYVVI  183
                AM++A+K    P+R FM ++   D + +L+ +     +K    K ++D+  + +V+
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVV  120

Query  184  PSFIISELKTAFKIGFLLYIPFLIIDIVVASVLMSMGMFMLPPVMISLPFKILLFVMVDG  243
            P+F++SEL+++F+IGFL+YIPF++ID++V+++L+++GM M++P+ ISLP+KILLFV+VDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  244  WYLLVKSLIMGY  255
            W  L+ +L+ +Y
Sbjct  181  WTRLLDGLFYSY  192

217) fliP in NC_007492


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  124 bits (454),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 82/192 (43%), Positives = 135/192 (71%), Gaps = 14/192 (7%)

Query  66   TSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFIMAPVF----DRVNN--DALQP  119
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  TLFIMAPVF    DRV++  + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  120  YLAEKLTAQQAVEKAQVPIKDFML----AQTRSSDLELFVRLSKRTDIATPDAAPLTILV  175
            + A   ++++ VE    P++ FM     ++ ++  LE   R+  +     +    L ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  176  PAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  235
            PAFV SEL+++FQIGF+I+IPF++IDL+V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WALIIGTLASSF  247
            W+ +++ L  S+
Sbjct  181  WTRLLDGLFYSY  192

218) fliP in NC_017911


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  124 bits (452),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 79/186 (43%), Positives = 131/186 (71%), Gaps = 10/186 (5%)

Query  63   TSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFIMAPVFDKVNQQALQPYLAEKL  122
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  TLFIMAPVF  + ++  +  L+E L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  123  TAQDAIDKAQ----GPIKDFML----SQTRSSDLELFMRLSKRTDIATPDQAPLTILVPA  174
             +  A++ A      P++ FM     ++ ++  LE   R+  +     + +  L ++VPA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  175  FVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWA  234
            FV SEL+++FQIGF+I+IPF++IDL+V+++L+A+GM M++P+ ISLP+KI+LFVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  235  LIIGTL  240
             +++ L
Sbjct  183  RLLDGL  188

219) fliP in NC_017530


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 79/192 (42%), Positives = 136/192 (71%), Gaps = 14/192 (7%)

Query  67   TSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPVF----DRVNQ--DALQP  120
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF    DRV++  + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  121  YLKEQMTAQQAIDKAQGPLKDFM---LAQTRQSDL-DLFMRLSKRTDIAGPDQVPLTILV  176
            +   + ++++ ++    PL+ FM   L    Q++L +   R+  +     + +  L ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  177  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  236
            PAFV SEL+++FQIGF+I+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  237  WALIMGTLASSF  248
            W+ +++ L  S+
Sbjct  181  WTRLLDGLFYSY  192

220) fliP in NC_018220


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 79/192 (42%), Positives = 136/192 (71%), Gaps = 14/192 (7%)

Query  67   TSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPVF----DRVNQ--DALQP  120
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF    DRV++  + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  121  YLKEQMTAQQAIDKAQGPLKDFM---LAQTRQSDL-DLFMRLSKRTDIAGPDQVPLTILV  176
            +   + ++++ ++    PL+ FM   L    Q++L +   R+  +     + +  L ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  177  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  236
            PAFV SEL+++FQIGF+I+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  237  WALIMGTLASSF  248
            W+ +++ L  S+
Sbjct  181  WTRLLDGLFYSY  192

221) fliP in NC_002947


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 79/192 (42%), Positives = 136/192 (71%), Gaps = 14/192 (7%)

Query  67   TSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPVF----DRVNQ--DALQP  120
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF    DRV++  + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  121  YLKEQMTAQQAIDKAQGPLKDFM---LAQTRQSDL-DLFMRLSKRTDIAGPDQVPLTILV  176
            +   + ++++ ++    PL+ FM   L    Q++L +   R+  +     + +  L ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  177  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  236
            PAFV SEL+++FQIGF+I+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  237  WALIMGTLASSF  248
            W+ +++ L  S+
Sbjct  181  WTRLLDGLFYSY  192

222) PPS_3758 in NC_015733


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 79/192 (42%), Positives = 136/192 (71%), Gaps = 14/192 (7%)

Query  68   TSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPVF----DRVNQ--DALQP  121
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF    DRV++  + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  122  YLKEQMTAQQAIDKAQGPLKDFM---LAQTRQSDL-DLFMRLSKRTDIAGPDQVPLTILV  177
            +   + ++++ ++    PL+ FM   L    Q++L +   R+  +     + +  L ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  178  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  237
            PAFV SEL+++FQIGF+I+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  238  WALIMGTLASSF  249
            W+ +++ L  S+
Sbjct  181  WTRLLDGLFYSY  192

223) Psefu_1935 in NC_015556


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 135/192 (71%), Gaps = 14/192 (7%)

Query  77   TSFTRIIIVFSILRQALGLQQTPSNQILIGLALFLTMFIMAPVF----DQINR--EALQP  130
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF    D++++  E L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  131  YLNQQLPAQQAIERAEVPIKNFM---LAQTRESDL-ELFVRLSKRTDIATPEAAPLTILV  186
            +   + ++++ +E    P++ FM   L    +++L E   R+  +     +    L ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  187  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSPLIISLPFKIMLFVLIDG  246
            PAFV SEL+++FQIGF+I+IPF++ID++V++IL+A+GM M++P+ ISLP+KI+LFVL+DG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  247  WALIMGTLASSF  258
            W+ +++ L  S+
Sbjct  181  WTRLLDGLFYSY  192

224) Atc_1493 in NC_015850


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (450),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 132/191 (70%), Gaps = 10/191 (5%)

Query  40   TAFTRIIIVLSLLKQALGSTQMPPSQVMVGLALFLTFFVMAPVFQQINTEALQPLNDNKI  99
            TAF +I +VL + ++A+G  Q PP+  + G+AL  T+F+MAPVF ++  + ++ L ++ +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMG-DRVKKLPEH-L  62

Query  100  DLVQAMAKAE----GPLRNFMLSQTRPDDLALFV----KLSGHKALEKPSDTPLSLLVPA  151
            D   AM  A      PLR FM  +  PD  + ++    ++      +K+S   L L+VPA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  152  FITSELKTGFQIGFLIFIPFVIIDLVVAAVLMSLGMMMLSPVTVSFPLKLMLFVLVDGWD  211
            F+ SEL++GFQIGFLI+IPF++IDL+V+ +L++LGM M++P+T+S+PLK++LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  212  LVIGSLVQSFV  222
             ++++L  S++
Sbjct  183  RLLDGLFYSYM  193

225) L483_24060 in NC_021491


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (451),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 78/188 (42%), Positives = 134/188 (72%), Gaps = 14/188 (7%)

Query  67   TSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVF----DRVNQ--DALQP  120
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF    DRV++  + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  121  YLKEQMTAQQAIDKAQVPLKDFM---LAQTRQSDL-DLFMRLSKRTDIAGPDQVPLTILV  176
            +   + ++++ ++    PL+ FM   L    Q++L +   R+  +     + +  L ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  177  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  236
            PAFV SEL+++FQIGF+I+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  237  WALIMGTL  244
            W+ +++ L
Sbjct  181  WTRLLDGL  188

226) fliP in NC_012660


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (450),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 77/184 (42%), Positives = 126/184 (69%), Gaps = 6/184 (3%)

Query  63   TSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFIMAPVFDKVNQQA--LQPYLAE  120
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  TLFIMAPVF  + ++   L   L  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  121  KMTAQDAIDKAQGPIKDFML----SQTRSSDLELFMRLSKRTDIATPDQAPLTILVPAFV  176
              + + A      P++ FM     ++ ++  LE   R+  +     + +  L ++VPAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  177  TSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI  236
             SEL+++FQIGF+I+IPF++IDL+V+++L+A+GM M++P+ ISLP+KI+LFVLVDGW+ +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  237  IGTL  240
            ++ L
Sbjct  185  LDGL  188

227) fliP in NC_021505


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (451),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 78/188 (42%), Positives = 134/188 (72%), Gaps = 14/188 (7%)

Query  71   TSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVF----DRVN--SDALQP  124
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF    DRV+  ++ L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  125  YLKEQMTAQQAIDKAQVPLKDFM---LAQTRQSDL-DLFMRLSKRTDIAGPDQVPLTILV  180
            +   + ++++ ++    PL+ FM   L    Q++L +   R+  +     + +  L ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  181  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  240
            PAFV SEL+++FQIGF+I+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  241  WALIMGTL  248
            W+ +++ L
Sbjct  181  WTRLLDGL  188

228) fliP in NC_010501


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (451),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 78/188 (42%), Positives = 134/188 (72%), Gaps = 14/188 (7%)

Query  71   TSFTRIIIVFSILRQALGLQQTPSNQVLTGMALFLTMFIMAPVF----DRVNQ--DALQP  124
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF    DRV++  + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  125  YLKEQMTAQQAIDKAQGPLKDFM---LAQTRQSDL-DLFMRLSKRTDIAGPDQVPLTILV  180
            +   + ++++ ++    PL+ FM   L    Q++L +   R+  +     + +  L ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  181  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  240
            PAFV SEL+++FQIGF+I+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  241  WALIMGTL  248
            W+ +++ L
Sbjct  181  WTRLLDGL  188

229) fliP in NC_012988


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (451),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 136/189 (72%), Gaps = 6/189 (3%)

Query  72   LVMVTSFTRFAVALSFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQ  131
            +++ T+F ++A+ L + R+++G+Q +P+N+ L ++AL  T+++MAP F     + VK L 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLP  59

Query  132  E--NRISEEEAFGK-IVDPFREFMTQHVRPKDLQTFTDLASRTFPK--AEAGEKIDLRIL  186
            E  + ++  E+ GK +V+P+R FMT+++ P     + + + R  PK  A+ + + DL ++
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  187  IPAFMISELRRGFEIGFLIVLPFLVIDIIVSTIVMSMGMMMLPPTVISLPFKVLFFILID  246
            +PAF++SEL+ GF+IGFLI +PF+VID+IVS I++++GM M++P  ISLP+K+L+F+L+D
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  247  GWNLLVSGL  255
            GW  L+ GL
Sbjct  180  GWTRLLDGL  188

230) fliP in NC_009708


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (450),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 78/184 (43%), Positives = 132/184 (72%), Gaps = 8/184 (4%)

Query  74   TCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKI-HQDAVIPFQQDE  132
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + + ++   +P + D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  133  ITLSQALGRAEV-PLKNYMLAQTSTKSLDQMMAIAQ------VSGEPQQQDLSVVTPAYV  185
            ++  ++ G+  V PL+ +M  +       +++  +Q      +++ + ++DL +V PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  186  LSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLM  245
            LSEL+++FQIGF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DGWT +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  246  VGTL  249
            ++ L
Sbjct  185  LDGL  188

231) PSEBR_a1491 in NC_015379


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (448),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 133/188 (71%), Gaps = 14/188 (7%)

Query  65   TSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVF----DRVNQ--DALQP  118
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF    DRV++  + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  119  YLAEKITAQDAVAKAEVPIKDFML----AQTRSSDLELFMRLSKRTDIPSADQAPLTILV  174
            + A   ++++ V     P++ FM     ++ ++  LE   R+  +     A +  L ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  175  PAFVTSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSPLIISLPFKIMLFVLVDG  234
            PAFV SEL+++FQIGF+I+IPF++IDL+V++IL+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  235  WALIIGTL  242
            W+ +++ L
Sbjct  181  WTRLLDGL  188

232) fliP in NC_016830


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (448),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 133/188 (71%), Gaps = 14/188 (7%)

Query  65   TSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVF----DRVNQ--DALQP  118
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF    DRV++  + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  119  YLAEKITAQDAVAKAEVPIKDFML----AQTRSSDLELFMRLSKRTDIPSADQAPLTILV  174
            + A   ++++ V     P++ FM     ++ ++  LE   R+  +     A +  L ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  175  PAFVTSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSPLIISLPFKIMLFVLVDG  234
            PAFV SEL+++FQIGF+I+IPF++IDL+V++IL+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  235  WALIIGTL  242
            W+ +++ L
Sbjct  181  WTRLLDGL  188

233) fliP in NC_016002


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (448),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 81/191 (43%), Positives = 131/191 (69%), Gaps = 11/191 (5%)

Query  64   TSFTRIIIVLSLLRQAMGTMQAPPNQVLVGLALFLTLFVMGPTFDQVYSKAWVPFSEDKI  123
            T+F +I +VL + R+A+G  QAPPN  L G+AL  TLF+M+P F ++  +    ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV-KKLPEHLD  63

Query  124  GFAQMLEEGSK---PMREFMLKQTREKDLAFFIEVSQSPAPPTPAEVSMKT----LIPAF  176
             FA M   G     P+R FM ++      + ++E +Q   P   A+ + +     ++PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  177  VISELKTAFQIGFMVFIPFLIIDLVVASILMAMGMMMVSPVIISLPFKLMLFVLVDGWTL  236
            V+SEL+++FQIGF+++IPF++IDL+V++IL+A+GM MV+P+ ISLP+K++LFVLVDGWT 
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  237  LMGSLVRSFYT  247
            L+++L   FY+
Sbjct  184  LLDGL---FYS  191

234) CK3_11030 in NC_021035


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (448),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 76/185 (42%), Positives = 131/185 (71%), Gaps = 8/185 (4%)

Query  36   SSFMRIIIILSFTRNAMGVQQTPPNMVLTGMALFLSLYIMSPVIGQI-NTVAYEPYKNGE  94
            ++F++I ++L +TRNA+GVQQ+PPNM L G+AL  +L+IM+PV++++ + V   P   + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  95   ITQQEAVSR-MADPLKQFMLRNTEKDTLDHFVQMS-----KQEVKKDVKEYPLTVVVPAF  148
            ++  E+ ++ + +PL+ FM RN + D   H+++ +     K+   K  ++  L +VVPAF
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD-DLLLVVPAF  123

Query  149  MTSELKKGFLAGFLIYLPFLLIDIVVSTTLMSMGMVMLPPTMVSLPFKLLLFITVNGWEL  208
            + SEL+ GF  GFLIY+PF++ID++VS  L+++GM M++P  +SLP+K+LLF+ V+GW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  209  LFSSL  213
            L+ +L
Sbjct  184  LLDGL  188

235) fliP in NC_020209


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (448),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 127/184 (70%), Gaps = 6/184 (3%)

Query  63   TSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDKVNQQA--LQPYLAE  120
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF  + ++   L   L  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  121  TITPQVAIDRAQGPIKDFML----SQTRSSDLELFVRLSKRTDIATPDQAPLTILVPAFV  176
              + + A  +   P++ FM     ++ ++  LE   R+  +     + +  L ++VPAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  177  TSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI  236
             SEL+++FQIGF+I+IPF++IDL+V+++L+A+GM M++P+ ISLP+KI+LFVLVDGW+ +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  237  IGTL  240
            ++ L
Sbjct  185  LDGL  188

236) fliP in NC_010322


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (448),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 78/188 (42%), Positives = 134/188 (72%), Gaps = 14/188 (7%)

Query  67   TSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPVF----DRVNQ--DALQP  120
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF    DRV++  + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  121  YLKEQMTAQQAIDKAQGPLKDFM---LAQTRQSDL-DLFMRLSKRTDIAGPDQVPLTILV  176
            +   + ++++ ++    PL+ FM   L    Q++L +   R+  +     + +  L ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  177  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  236
            PAFV SEL+++FQIGF+I+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  237  WALIMGTL  244
            W+ +++ L
Sbjct  181  WTRLLDGL  188

237) fliP in NC_019905


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (448),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 78/188 (42%), Positives = 134/188 (72%), Gaps = 14/188 (7%)

Query  67   TSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPVF----DRVNQ--DALQP  120
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF    DRV++  + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  121  YLKEQMTAQQAIDKAQGPLKDFM---LAQTRQSDL-DLFMRLSKRTDIAGPDQVPLTILV  176
            +   + ++++ ++    PL+ FM   L    Q++L +   R+  +     + +  L ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  177  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  236
            PAFV SEL+++FQIGF+I+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  237  WALIMGTL  244
            W+ +++ L
Sbjct  181  WTRLLDGL  188

238) YSA_08109 in NC_017986


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (448),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 136/192 (71%), Gaps = 14/192 (7%)

Query  67   TSFTRIIIVFSILRQALGLQQTPSNQLLNGMALFLTMFIMAPVF----ERVNQ--DALQP  120
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF    +RV++  + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  121  YLKEQMTAQQAIDKAQGPLKDFM---LAQTRQSDL-DLFMRLSKRTDIAGPDQVPLTILV  176
            +   + ++++ ++    PL+ FM   L    Q++L +   R+  +     + +  L ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  177  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  236
            PAFV SEL+++FQIGF+I+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  237  WALIMGTLASSF  248
            W+ +++ L  S+
Sbjct  181  WTRLLDGLFYSY  192

239) fliP in NC_009512


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  123 bits (448),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 136/192 (71%), Gaps = 14/192 (7%)

Query  67   TSFTRIIIVFSILRQALGLQQTPSNQLLNGMALFLTMFIMAPVF----ERVNQ--DALQP  120
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF    +RV++  + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  121  YLKEQMTAQQAIDKAQGPLKDFM---LAQTRQSDL-DLFMRLSKRTDIAGPDQVPLTILV  176
            +   + ++++ ++    PL+ FM   L    Q++L +   R+  +     + +  L ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  177  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  236
            PAFV SEL+++FQIGF+I+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  237  WALIMGTLASSF  248
            W+ +++ L  S+
Sbjct  181  WTRLLDGLFYSY  192

240) fliP in NC_007005


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/185 (44%), Positives = 131/185 (71%), Gaps = 8/185 (4%)

Query  66   TSFTRIIIVFSILRQALGLQQAPSNQILTGMALFLTMFIMAPVFDRVNQ--DALQPYLAE  123
            T+F +I +V+ I R+A+G+QQAP+N  L G+AL  T+FIMAPVF  + +    L   L +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL-D  63

Query  124  KLSAQDAVAKAQV-PIKDFML----AQTRTSDLELFMRLSKRTDIPTPDAAPLTILVPAF  178
             ++A ++ +K  V P++ FM     ++ +T  LE   R+  +     +    L ++VPAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  179  VISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWAL  238
            V+SEL+++FQIGF+I+IPF++IDL+V+++L+A+GM M++P+ ISLP+KI+LFVLVDGW+ 
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  239  IVGTL  243
            +++ L
Sbjct  184  LLDGL  188

241) fliP in NC_021237


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 78/185 (43%), Positives = 131/185 (71%), Gaps = 8/185 (4%)

Query  65   TSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQ--DALQPYLAE  122
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF  + +    L   L +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL-D  63

Query  123  KLTAQDAVAKAQV-PIKDFML----AQTRSSDLELFMRLSKRTDIASPDQAPLTILVPAF  177
             ++A ++ +K  V P++ FM     ++ ++  LE   R+  +     + +  L ++VPAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  178  VTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWAL  237
            V SEL+++FQIGF+I+IPF++IDL+V+++L+A+GM M++P+ ISLP+KI+LFVLVDGW+ 
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  238  IIGTL  242
            +++ L
Sbjct  184  LLDGL  188

242) fliP in NC_004129


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 78/185 (43%), Positives = 131/185 (71%), Gaps = 8/185 (4%)

Query  65   TSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQ--DALQPYLAE  122
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF  + +    L   L +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL-D  63

Query  123  KLTAQDAVAKAQV-PIKDFML----AQTRSSDLELFMRLSKRTDIASPDQAPLTILVPAF  177
             ++A ++ +K  V P++ FM     ++ ++  LE   R+  +     + +  L ++VPAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  178  VTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWAL  237
            V SEL+++FQIGF+I+IPF++IDL+V+++L+A+GM M++P+ ISLP+KI+LFVLVDGW+ 
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  238  IIGTL  242
            +++ L
Sbjct  184  LLDGL  188

243) fliP in NC_005773


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 79/185 (43%), Positives = 131/185 (71%), Gaps = 8/185 (4%)

Query  66   TSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQ--DALQPYLAE  123
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF  + +    L   L +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL-D  63

Query  124  KLSAQDAVAKAQV-PIKDFML----AQTRTSDLELFMRLSKRTDIPTPDAAPLTILVPAF  178
             ++A ++ +K  V P++ FM     ++ +T  LE   R+  +     +    L ++VPAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  179  VISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWAL  238
            V+SEL+++FQIGF+I+IPF++IDL+V+++L+A+GM M++P+ ISLP+KI+LFVLVDGW+ 
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  239  IVGTL  243
            +++ L
Sbjct  184  LLDGL  188

244) fliP in NC_004578


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 79/185 (43%), Positives = 131/185 (71%), Gaps = 8/185 (4%)

Query  66   TSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQ--DALQPYLAE  123
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF  + +    L   L +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL-D  63

Query  124  KLTAQDAVAKAQV-PIKDFML----AQTRTSDLELFMRLSKRTDIPTPDAAPLTILVPAF  178
             ++A ++ +K  V P++ FM     ++ +T  LE   R+  +     +    L ++VPAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  179  VISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWAL  238
            V+SEL+++FQIGF+I+IPF++IDL+V+++L+A+GM M++P+ ISLP+KI+LFVLVDGW+ 
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  239  IVGTL  243
            +++ L
Sbjct  184  LLDGL  188

245) fliP in NC_011757


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 76/189 (41%), Positives = 136/189 (72%), Gaps = 6/189 (3%)

Query  72   LVMVTSFTRFAVAFSFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQ  131
            +++ T+F ++A+ + + R+++G+Q +P+N+ L ++AL  T+++MAP F     + VK L 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLP  59

Query  132  E--NRISEEEAFGK-IVDPFREFMTQHVRPKDLQTFTDLASRTFPK--AEAGEKIDLRIL  186
            E  + ++  E+ GK +V+P+R FMT+++ P     + + + R  PK  A+ + + DL ++
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  187  IPAFMISELRRGFEIGFLIVLPFLVIDIIVSTIVMSMGMMMLPPTVISLPFKVLFFILID  246
            +PAF++SEL+ GF+IGFLI +PF+VID+IVS I++++GM M++P  ISLP+K+L+F+L+D
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  247  GWNLLVSGL  255
            GW  L+ GL
Sbjct  180  GWTRLLDGL  188

246) fliP in NC_012808


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 76/189 (41%), Positives = 136/189 (72%), Gaps = 6/189 (3%)

Query  72   LVMVTSFTRFAVAFSFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQ  131
            +++ T+F ++A+ + + R+++G+Q +P+N+ L ++AL  T+++MAP F     + VK L 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLP  59

Query  132  E--NRISEEEAFGK-IVDPFREFMTQHVRPKDLQTFTDLASRTFPK--AEAGEKIDLRIL  186
            E  + ++  E+ GK +V+P+R FMT+++ P     + + + R  PK  A+ + + DL ++
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  187  IPAFMISELRRGFEIGFLIVLPFLVIDIIVSTIVMSMGMMMLPPTVISLPFKVLFFILID  246
            +PAF++SEL+ GF+IGFLI +PF+VID+IVS I++++GM M++P  ISLP+K+L+F+L+D
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  247  GWNLLVSGL  255
            GW  L+ GL
Sbjct  180  GWTRLLDGL  188

247) fliP in NC_010172


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 76/189 (41%), Positives = 136/189 (72%), Gaps = 6/189 (3%)

Query  72   LVMVTSFTRFAVAFSFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQ  131
            +++ T+F ++A+ + + R+++G+Q +P+N+ L ++AL  T+++MAP F     + VK L 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLP  59

Query  132  E--NRISEEEAFGK-IVDPFREFMTQHVRPKDLQTFTDLASRTFPK--AEAGEKIDLRIL  186
            E  + ++  E+ GK +V+P+R FMT+++ P     + + + R  PK  A+ + + DL ++
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  187  IPAFMISELRRGFEIGFLIVLPFLVIDIIVSTIVMSMGMMMLPPTVISLPFKVLFFILID  246
            +PAF++SEL+ GF+IGFLI +PF+VID+IVS I++++GM M++P  ISLP+K+L+F+L+D
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  247  GWNLLVSGL  255
            GW  L+ GL
Sbjct  180  GWTRLLDGL  188

248) fliP in NC_014121


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 89/193 (47%), Positives = 136/193 (71%), Gaps = 15/193 (7%)

Query  60   TGFTRIIIVLGLMRNALGTPTAPPNQVLVGLSLFLTFFVMSPVFSQIYEKAWQPLQENK-  118
            T+F +I +VL + RNA+G   APPN  L G++L  T+F+M+PVFS++ ++  + L E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV-KKLPEHLD  63

Query  119  --ITMEVALTEGVKPLRAFM---LDQTRESDL-AMFARI--AKTPDIASPEEVPLSILVP  170
               +ME A  + V PLR+FM   LD   +++L     R+     +D AS ++  L ++VP
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVVP  121

Query  171  AFITSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPTTIALPFKLMLFVLVDGW  230
            AF+ SEL+++FQIGF I+IPF++IDL+V++IL+ALGM MV+P TI+LP+K++LFVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  231  QLLVGSLAQSFYS  243
              L+++L   FYS
Sbjct  182  TRLLDGL---FYS  191

249) A3UG_14735 in NC_018079


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 89/193 (47%), Positives = 136/193 (71%), Gaps = 15/193 (7%)

Query  60   TGFTRIIIVLGLMRNALGTPTAPPNQVLVGLSLFLTFFVMSPVFSQIYEKAWQPLQENK-  118
            T+F +I +VL + RNA+G   APPN  L G++L  T+F+M+PVFS++ ++  + L E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV-KKLPEHLD  63

Query  119  --ITMEVALTEGVKPLRAFM---LDQTRESDL-AMFARI--AKTPDIASPEEVPLSILVP  170
               +ME A  + V PLR+FM   LD   +++L     R+     +D AS ++  L ++VP
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVVP  121

Query  171  AFITSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPTTIALPFKLMLFVLVDGW  230
            AF+ SEL+++FQIGF I+IPF++IDL+V++IL+ALGM MV+P TI+LP+K++LFVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  231  QLLVGSLAQSFYS  243
              L+++L   FYS
Sbjct  182  TRLLDGL---FYS  191

250) fliP in NC_017168


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 131/184 (72%), Gaps = 8/184 (4%)

Query  74   TCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKI-HQDAVIPFQQDE  132
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + + ++   +P + D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  133  ITLSQALGR-AEAPLKNYMLAQTSTKSLDQMMAIAQ------VSGEPQQQDLSVVTPAYV  185
            ++  ++ G+    PL+ +M  +       +++  +Q      +++ + ++DL +V PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  186  LSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLM  245
            LSEL+++FQ+GF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DGWT +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  246  VGTL  249
            ++ L
Sbjct  185  LDGL  188

251) fliP in NC_010159


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 131/184 (72%), Gaps = 8/184 (4%)

Query  74   TCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKI-HQDAVIPFQQDE  132
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + + ++   +P + D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  133  ITLSQALGR-AEAPLKNYMLAQTSTKSLDQMMAIAQ------VSGEPQQQDLSVVTPAYV  185
            ++  ++ G+    PL+ +M  +       +++  +Q      +++ + ++DL +V PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  186  LSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLM  245
            LSEL+++FQ+GF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DGWT +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  246  VGTL  249
            ++ L
Sbjct  185  LDGL  188

252) fliP in NC_008150


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 131/184 (72%), Gaps = 8/184 (4%)

Query  74   TCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKI-HQDAVIPFQQDE  132
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + + ++   +P + D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  133  ITLSQALGR-AEAPLKNYMLAQTSTKSLDQMMAIAQ------VSGEPQQQDLSVVTPAYV  185
            ++  ++ G+    PL+ +M  +       +++  +Q      +++ + ++DL +V PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  186  LSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLM  245
            LSEL+++FQ+GF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DGWT +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  246  VGTL  249
            ++ L
Sbjct  185  LDGL  188

253) YPC_3863 in NC_017265


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 131/184 (72%), Gaps = 8/184 (4%)

Query  74   TCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKI-HQDAVIPFQQDE  132
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + + ++   +P + D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  133  ITLSQALGR-AEAPLKNYMLAQTSTKSLDQMMAIAQ------VSGEPQQQDLSVVTPAYV  185
            ++  ++ G+    PL+ +M  +       +++  +Q      +++ + ++DL +V PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  186  LSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLM  245
            LSEL+++FQ+GF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DGWT +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  246  VGTL  249
            ++ L
Sbjct  185  LDGL  188

254) fliP in NC_005810


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 131/184 (72%), Gaps = 8/184 (4%)

Query  74   TCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKI-HQDAVIPFQQDE  132
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + + ++   +P + D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  133  ITLSQALGR-AEAPLKNYMLAQTSTKSLDQMMAIAQ------VSGEPQQQDLSVVTPAYV  185
            ++  ++ G+    PL+ +M  +       +++  +Q      +++ + ++DL +V PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  186  LSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLM  245
            LSEL+++FQ+GF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DGWT +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  246  VGTL  249
            ++ L
Sbjct  185  LDGL  188

255) fliP in NC_003143


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 131/184 (72%), Gaps = 8/184 (4%)

Query  74   TCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKI-HQDAVIPFQQDE  132
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + + ++   +P + D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  133  ITLSQALGR-AEAPLKNYMLAQTSTKSLDQMMAIAQ------VSGEPQQQDLSVVTPAYV  185
            ++  ++ G+    PL+ +M  +       +++  +Q      +++ + ++DL +V PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  186  LSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLM  245
            LSEL+++FQ+GF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DGWT +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  246  VGTL  249
            ++ L
Sbjct  185  LDGL  188

256) fliP in NC_017154


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 131/184 (72%), Gaps = 8/184 (4%)

Query  74   TCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKI-HQDAVIPFQQDE  132
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + + ++   +P + D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  133  ITLSQALGR-AEAPLKNYMLAQTSTKSLDQMMAIAQ------VSGEPQQQDLSVVTPAYV  185
            ++  ++ G+    PL+ +M  +       +++  +Q      +++ + ++DL +V PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  186  LSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLM  245
            LSEL+++FQ+GF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DGWT +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  246  VGTL  249
            ++ L
Sbjct  185  LDGL  188

257) fliP in NC_017160


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 131/184 (72%), Gaps = 8/184 (4%)

Query  74   TCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKI-HQDAVIPFQQDE  132
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + + ++   +P + D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  133  ITLSQALGR-AEAPLKNYMLAQTSTKSLDQMMAIAQ------VSGEPQQQDLSVVTPAYV  185
            ++  ++ G+    PL+ +M  +       +++  +Q      +++ + ++DL +V PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  186  LSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLM  245
            LSEL+++FQ+GF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DGWT +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  246  VGTL  249
            ++ L
Sbjct  185  LDGL  188

258) fliP in NC_004088


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 131/184 (72%), Gaps = 8/184 (4%)

Query  74   TCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKI-HQDAVIPFQQDE  132
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + + ++   +P + D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  133  ITLSQALGR-AEAPLKNYMLAQTSTKSLDQMMAIAQ------VSGEPQQQDLSVVTPAYV  185
            ++  ++ G+    PL+ +M  +       +++  +Q      +++ + ++DL +V PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  186  LSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLM  245
            LSEL+++FQ+GF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DGWT +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  246  VGTL  249
            ++ L
Sbjct  185  LDGL  188

259) fliP in NC_008149


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 131/184 (72%), Gaps = 8/184 (4%)

Query  74   TCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKI-HQDAVIPFQQDE  132
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + + ++   +P + D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  133  ITLSQALGR-AEAPLKNYMLAQTSTKSLDQMMAIAQ------VSGEPQQQDLSVVTPAYV  185
            ++  ++ G+    PL+ +M  +       +++  +Q      +++ + ++DL +V PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  186  LSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLM  245
            LSEL+++FQ+GF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DGWT +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  246  VGTL  249
            ++ L
Sbjct  185  LDGL  188

260) fliP in NC_009381


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 131/184 (72%), Gaps = 8/184 (4%)

Query  74   TCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKI-HQDAVIPFQQDE  132
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + + ++   +P + D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  133  ITLSQALGR-AEAPLKNYMLAQTSTKSLDQMMAIAQ------VSGEPQQQDLSVVTPAYV  185
            ++  ++ G+    PL+ +M  +       +++  +Q      +++ + ++DL +V PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  186  LSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLM  245
            LSEL+++FQ+GF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DGWT +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  246  VGTL  249
            ++ L
Sbjct  185  LDGL  188

261) fliP in NC_014029


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 131/184 (72%), Gaps = 8/184 (4%)

Query  74   TCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKI-HQDAVIPFQQDE  132
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + + ++   +P + D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  133  ITLSQALGR-AEAPLKNYMLAQTSTKSLDQMMAIAQ------VSGEPQQQDLSVVTPAYV  185
            ++  ++ G+    PL+ +M  +       +++  +Q      +++ + ++DL +V PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  186  LSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLM  245
            LSEL+++FQ+GF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DGWT +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  246  VGTL  249
            ++ L
Sbjct  185  LDGL  188

262) fliP in NC_006155


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 131/184 (72%), Gaps = 8/184 (4%)

Query  74   TCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKI-HQDAVIPFQQDE  132
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + + ++   +P + D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  133  ITLSQALGR-AEAPLKNYMLAQTSTKSLDQMMAIAQ------VSGEPQQQDLSVVTPAYV  185
            ++  ++ G+    PL+ +M  +       +++  +Q      +++ + ++DL +V PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  186  LSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLM  245
            LSEL+++FQ+GF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DGWT +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  246  VGTL  249
            ++ L
Sbjct  185  LDGL  188

263) fliP in NC_010634


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 131/184 (72%), Gaps = 8/184 (4%)

Query  74   TCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKI-HQDAVIPFQQDE  132
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + + ++   +P + D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  133  ITLSQALGR-AEAPLKNYMLAQTSTKSLDQMMAIAQ------VSGEPQQQDLSVVTPAYV  185
            ++  ++ G+    PL+ +M  +       +++  +Q      +++ + ++DL +V PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  186  LSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLM  245
            LSEL+++FQ+GF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DGWT +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  246  VGTL  249
            ++ L
Sbjct  185  LDGL  188

264) fliP in NC_010465


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 131/184 (72%), Gaps = 8/184 (4%)

Query  74   TCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKI-HQDAVIPFQQDE  132
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + + ++   +P + D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  133  ITLSQALGR-AEAPLKNYMLAQTSTKSLDQMMAIAQ------VSGEPQQQDLSVVTPAYV  185
            ++  ++ G+    PL+ +M  +       +++  +Q      +++ + ++DL +V PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  186  LSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLM  245
            LSEL+++FQ+GF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DGWT +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  246  VGTL  249
            ++ L
Sbjct  185  LDGL  188

265) fliP in NC_012559


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (442),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 80/189 (43%), Positives = 132/189 (70%), Gaps = 9/189 (4%)

Query  67   TAFTRIVIVLSLLRQAIGLMQSPPNQVIVGLSLFLTLFVMAPVFDQ-AYREAWLPYSDSQ  125
            TAF +I +VL + R+AIG+ Q+PPN  + G++L  TLF+MAPVF + + R   LP     
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  126  MNFMQAAEKGV-QPFKGFMLKQ-TREKDLAFFVEIAR---EAPPATPADVSLKTLIPAFV  180
               M++A K V +P++ FM ++   + +  ++ +  R      +  ++   L  ++PAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  181  VSELKTAFQIGFMVFIPFLIIDLVVASVLMAMGMMMVSPVIISLPFKLMLFVLVDGWTLL  240
            +SEL+++FQIGF+++IPF++IDL+V+++L+A+GM MV+P+ ISLP+K++LFVLVDGWT L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  241  IGSLVQSFY  249
            +++L   FY
Sbjct  185  LDGL---FY  190

266) fliP in NC_020912


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (442),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 77/184 (42%), Positives = 127/184 (70%), Gaps = 6/184 (3%)

Query  71   TSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQA--LQPYLNE  128
            T+F +I +V+ I R+A+G+Q +P+N  L G+AL  T+F+MAPVF  +  +   L   L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  129  QIPAQEALQKAEVPLKAFML----AQTRTSDLELFVRLSKRTDIGSPEATPLTILVPAFV  184
              + + A +    PL++FM     ++ +T  LE   R+  +   + +    L ++VPAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  185  TSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI  244
             SEL+++FQIGF+I+IPF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFVLVDGW+ +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  245  IGTL  248
            ++ L
Sbjct  185  LDGL  188

267) fliP in NC_018080


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (442),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 77/184 (42%), Positives = 127/184 (70%), Gaps = 6/184 (3%)

Query  71   TSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQA--LQPYLNE  128
            T+F +I +V+ I R+A+G+Q +P+N  L G+AL  T+F+MAPVF  +  +   L   L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  129  QIPAQEALQKAEVPLKAFML----AQTRTSDLELFVRLSKRTDIGSPEATPLTILVPAFV  184
              + + A +    PL++FM     ++ +T  LE   R+  +   + +    L ++VPAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  185  TSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI  244
             SEL+++FQIGF+I+IPF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFVLVDGW+ +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  245  IGTL  248
            ++ L
Sbjct  185  LDGL  188

268) fliP in NC_011770


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (442),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 77/184 (42%), Positives = 127/184 (70%), Gaps = 6/184 (3%)

Query  71   TSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQA--LQPYLNE  128
            T+F +I +V+ I R+A+G+Q +P+N  L G+AL  T+F+MAPVF  +  +   L   L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  129  QIPAQEALQKAEVPLKAFML----AQTRTSDLELFVRLSKRTDIGSPEATPLTILVPAFV  184
              + + A +    PL++FM     ++ +T  LE   R+  +   + +    L ++VPAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  185  TSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI  244
             SEL+++FQIGF+I+IPF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFVLVDGW+ +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  245  IGTL  248
            ++ L
Sbjct  185  LDGL  188

269) fliP in NC_017548


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (442),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 77/184 (42%), Positives = 127/184 (70%), Gaps = 6/184 (3%)

Query  71   TSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQA--LQPYLNE  128
            T+F +I +V+ I R+A+G+Q +P+N  L G+AL  T+F+MAPVF  +  +   L   L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  129  QIPAQEALQKAEVPLKAFML----AQTRTSDLELFVRLSKRTDIGSPEATPLTILVPAFV  184
              + + A +    PL++FM     ++ +T  LE   R+  +   + +    L ++VPAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  185  TSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI  244
             SEL+++FQIGF+I+IPF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFVLVDGW+ +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  245  IGTL  248
            ++ L
Sbjct  185  LDGL  188

270) fliP in NC_017549


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (442),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 77/184 (42%), Positives = 127/184 (70%), Gaps = 6/184 (3%)

Query  71   TSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQA--LQPYLNE  128
            T+F +I +V+ I R+A+G+Q +P+N  L G+AL  T+F+MAPVF  +  +   L   L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  129  QIPAQEALQKAEVPLKAFML----AQTRTSDLELFVRLSKRTDIGSPEATPLTILVPAFV  184
              + + A +    PL++FM     ++ +T  LE   R+  +   + +    L ++VPAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  185  TSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI  244
             SEL+++FQIGF+I+IPF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFVLVDGW+ +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  245  IGTL  248
            ++ L
Sbjct  185  LDGL  188

271) fliP in NC_002516


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (442),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 77/184 (42%), Positives = 127/184 (70%), Gaps = 6/184 (3%)

Query  71   TSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQA--LQPYLNE  128
            T+F +I +V+ I R+A+G+Q +P+N  L G+AL  T+F+MAPVF  +  +   L   L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  129  QIPAQEALQKAEVPLKAFML----AQTRTSDLELFVRLSKRTDIGSPEATPLTILVPAFV  184
              + + A +    PL++FM     ++ +T  LE   R+  +   + +    L ++VPAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  185  TSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI  244
             SEL+++FQIGF+I+IPF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFVLVDGW+ +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  245  IGTL  248
            ++ L
Sbjct  185  LDGL  188

272) M062_07750 in NC_021577


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (442),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 77/184 (42%), Positives = 127/184 (70%), Gaps = 6/184 (3%)

Query  71   TSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQA--LQPYLNE  128
            T+F +I +V+ I R+A+G+Q +P+N  L G+AL  T+F+MAPVF  +  +   L   L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  129  QIPAQEALQKAEVPLKAFML----AQTRTSDLELFVRLSKRTDIGSPEATPLTILVPAFV  184
              + + A +    PL++FM     ++ +T  LE   R+  +   + +    L ++VPAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  185  TSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI  244
             SEL+++FQIGF+I+IPF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFVLVDGW+ +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  245  IGTL  248
            ++ L
Sbjct  185  LDGL  188

273) fliP in NC_008463


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (442),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 77/184 (42%), Positives = 127/184 (70%), Gaps = 6/184 (3%)

Query  71   TSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQA--LQPYLNE  128
            T+F +I +V+ I R+A+G+Q +P+N  L G+AL  T+F+MAPVF  +  +   L   L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  129  QIPAQEALQKAEVPLKAFML----AQTRTSDLELFVRLSKRTDIGSPEATPLTILVPAFV  184
              + + A +    PL++FM     ++ +T  LE   R+  +   + +    L ++VPAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  185  TSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI  244
             SEL+++FQIGF+I+IPF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFVLVDGW+ +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  245  IGTL  248
            ++ L
Sbjct  185  LDGL  188

274) fliP in NC_018868


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  121 bits (441),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 79/186 (43%), Positives = 136/186 (74%), Gaps = 10/186 (5%)

Query  72   TSFTRIIIVFAILRQALGLQQSPSNQIMVGLALFLTLFIMSPVFNQVYTDAVEPYMNEQM  131
            T+F +I +V+ I R+A+G+QQ+P+N  + G+AL  TLFIM+PVF+++  D V   + E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  132  DSKTALDSA----LVPMRSFMISQ-TRESDLKLFLDIGR-YPS--LDSVDDVPLAVLMPA  183
            D+ +A++SA    + P+R+FM  +   + +  L+ +  R  P    D      L +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  184  FITSELKTAFQIGFMIFIPFLVIDLVVASVLMAMGMMMLSPLIISLPFKLMLFVLVDGWA  243
            F+ SEL+++FQIGF+I+IPF+VIDL+V+++L+A+GM M++P+ ISLP+K++LFVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  244  MIIGSL  249
             ++++L
Sbjct  183  RLLDGL  188

275) fliP in NC_006177


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  120 bits (440),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 131/194 (68%), Gaps = 10/194 (5%)

Query  66   IILCTSFTRIIVVFGFIRTALGLQQTPPNQVLIGLALFLTAAVMMPTFSEINQTAVQPYL  125
            +I+CT+F +I +V+ + R A+G+QQ+PPN  L G+AL  T  +M P FSE+ +   +  L
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--L  58

Query  126  AGEIDQVEAIERGAL----PLKAFMLRQTREADLGLMLEVSGQ----PAPEGPEDVSFLT  177
            + ++D   A+E ++     PL++FM R+        +LE + +      ++ +    +L 
Sbjct  59   PEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  178  VVPAFALSELKTAFTMGFLIYLPFIIIDLITASLMMSLGMMMVPPTLISLPFKVLLFVLV  237
            VVPAF LSEL+++F +GFLIY+PFI+IDLI ++++++LGM MV+P  ISLP+K+LLFVLV
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  238  DGWHLVVESLVRSF  251
            DGW  ++++L  S+
Sbjct  179  DGWTRLLDGLFYSY  192

276) fliP in NC_010725


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  120 bits (440),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 136/189 (72%), Gaps = 6/189 (3%)

Query  65   LVMMTSFTRFAVAFSFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQ  124
            +++ T+F ++A+ + + R+++G+Q +P+N+ L ++AL  T+++MAP F     + VK L 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLP  59

Query  125  E--NRIGEEEAFGK-IVEPFREFMTQHVRPKDLQTFTDLASRNFPK--AEAGEKIDLRIL  179
            E  + ++  E+ GK +VEP+R FMT+++ P     + + + R  PK  A+ + + DL ++
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  180  IPAFMISELRRGFEIGFLIVLPFLVIDIIVSTIVMSMGMMMLPPTVISLPFKVLFFILID  239
            +PAF++SEL+ GF+IGFLI +PF+VID+IVS I++++GM M++P  ISLP+K+L+F+L+D
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  240  GWNLLVSGL  248
            GW  L+ GL
Sbjct  180  GWTRLLDGL  188

277) YE105_C3298 in NC_015224


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  120 bits (440),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 133/184 (73%), Gaps = 8/184 (4%)

Query  74   TCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKV-HQDAVIPFQNDE  132
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + + ++   +P + D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  133  ITLPQALARAEV-PLKNYMLAQTSTKSLDQMMDIAQ------VSGEPQQQDLTVVTPAYL  185
            ++  ++ ++  V PL+ +M  +       ++++ +Q      +++ + ++DL +V PA++
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  186  LSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLI  245
            LSEL+++FQIGF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DGWT +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  246  VGTL  249
            ++ L
Sbjct  185  LDGL  188

278) fliP in NC_009656


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  120 bits (439),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 77/188 (41%), Positives = 133/188 (71%), Gaps = 14/188 (7%)

Query  71   TSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVF----DRIN--SQALQP  124
            T+F +I +V+ I R+A+G+Q +P+N  L G+AL  T+F+MAPVF    DR++  ++ L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  125  YLNEQIPAQEALQRAEVPLKAFML----AQTRTSDLELFVRLSKRTDISGPEATPLTILV  180
            +   + ++++ ++    PL++FM     ++ +T  LE   R+  +     +    L ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  181  PAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDG  240
            PAFV SEL+++FQIGF+I+IPF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  241  WALIIGTL  248
            W+ +++ L
Sbjct  181  WTRLLDGL  188

279) fliP in NC_007974


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  120 bits (438),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 81/196 (42%), Positives = 138/196 (71%), Gaps = 12/196 (6%)

Query  77   MLMMTGFTRIIIVLGLLRNALGTASSPPNQVLVGLSLFLTFFVMSPVFDKVYTDAYQPLS  136
            M++ T+F +I +VL + RNA+G   +PPN  L G++L  T+F+M+PVF  +  D  + L+
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLP  59

Query  137  ENK---ISLETAAQRAAVPLRAFMLRQ-TREKDLAMFAQMAKT-----PELQGPEDVPFT  187
            E+     ++E+A+++   PLR+FM R+   + +  ++ +  +      ++  + +D+   
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDL--L  117

Query  188  VLVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAMGMMMVPPATISLPFKLMLFVL  247
            ++VPAFV SEL+++FQIGF I+IPF++IDL+V+++L+A+GM MV+P TISLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  248  VDGWQLLLGSLAQSFM  263
            VDGW  LL++L  S+M
Sbjct  178  VDGWTRLLDGLFYSYM  193

280) fliP in NC_015714


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  120 bits (439),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 130/190 (69%), Gaps = 6/190 (3%)

Query  87   TAFLRLSIVLDFIKRALSLQQVPPTQVLHGIALFLALFIMWPVFTEIYAKSFKPLADGQ-  145
            TAFL++++VL + + A+++QQ PP   L GIAL  +LFIM PVF+E+ +   K L++   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  146  --VDIQTAYTEAERPLRVFMYRQMAHDPSSVRLCMSMAKLPK--PDTLADVPTYVLIPAF  201
                +++A  +   PLR FM R++  D  +  L  +    PK  +D  +     +++PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  202  ILHELTVAFQIGIFLYLPFIIVDMVVASILMSMGMIMLPPVQISLPFKLVLFVLVDGWNL  261
            +L EL  +FQIG+++Y+PFI++D++V++IL+++GM M++P+ ISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  262  LIDRLFHSFL  271
            L+D LF S++
Sbjct  184  LLDGLFYSYM  193

281) fliP in NC_014640


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  120 bits (437),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 129/190 (68%), Gaps = 11/190 (5%)

Query  80   TGFTRIIIVLGLLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYKPLSEGSI  139
            T+F +I +VL + R+A+G   +PPN  L G+AL  T++ M+PVF  +  D  K L+E   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  140  QF---EAAVERAAGPLRTFMLHQ-TRENDLSLFANLAK---QPALEDPSQVPLRILVPAF  192
             F   E+A  +   PLRTFM ++   + +  L+ N  +   +   + +S+  L ++VPAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  193  ITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNL  252
            + SEL+++FQIGF I+IPF++IDL+V+++L+ALGM MV+P+T++LP+K++LFVL DGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  253  LMGSLAQSFY  262
            L+++L   FY
Sbjct  184  LLDGL---FY  190

282) fliP in NC_005363


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  120 bits (437),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 135/194 (70%), Gaps = 10/194 (5%)

Query  66   LIMMTGFTRIIIVLSFLRQAMGVQQMPPNQLLVGLALFLTFFVMQPAFNEMNT--NGIQP  123
            +I+ T+F +I +VL + R+A+GVQQ PPN  L G+AL  T+F+M P F+EM    + +  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  124  YMAGTISQDQAIERTFAPLRKFMFNQTRDSDLALFIKLSKVEK--PKTRADVPT----MV  177
             +    + + A  +   PLR FM  +  D+D+   + L + ++  PK  AD ++    ++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFM-TRNLDPDIQTHL-LENTQRMWPKEMADKASRDDLLL  118

Query  178  LVPAFVVSELKTAFQIGFIIFLPFLVIDIVAASVLMAMGMMMLPPVVISLPFKIMLFVLV  237
            +VPAFV+SEL+++FQIGF+I++PF+VID++ +++L+A+GM M++P+ ISLP+KI+LFVLV
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  238  DGWGLLIGSMVKSF  251
            DGW  L++++  S+
Sbjct  179  DGWTRLLDGLFYSY  192

283) fliP in NC_019567


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  120 bits (437),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 135/194 (70%), Gaps = 10/194 (5%)

Query  66   LIMMTGFTRIIIVLSFLRQAMGVQQMPPNQLLVGLALFLTFFVMQPAFNEMNT--NGIQP  123
            +I+ T+F +I +VL + R+A+GVQQ PPN  L G+AL  T+F+M P F+EM    + +  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  124  YMAGTISQDQAIERTFAPLRKFMFNQTRDSDLALFIKLSKVEK--PKTRADVPT----MV  177
             +    + + A  +   PLR FM  +  D+D+   + L + ++  PK  AD ++    ++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFM-TRNLDPDIQTHL-LENTQRMWPKEMADKASRDDLLL  118

Query  178  LVPAFVVSELKTAFQIGFIIFLPFLVIDIVAASVLMAMGMMMLPPVVISLPFKIMLFVLV  237
            +VPAFV+SEL+++FQIGF+I++PF+VID++ +++L+A+GM M++P+ ISLP+KI+LFVLV
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  238  DGWGLLIGSMVKSF  251
            DGW  L++++  S+
Sbjct  179  DGWTRLLDGLFYSY  192

284) fliP in NC_013971


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (435),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 87/192 (46%), Positives = 135/192 (71%), Gaps = 13/192 (6%)

Query  64   TGFTRIIIVLGLMRNALGTPTSPPNQVLVGLALFLTFYVMSPVFNQIYEQAWQPLQEDK-  122
            T+F +I +VL + RNA+G   +PPN  L G+AL  T+++M+PVF+++ ++  + L E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV-KKLPEHLD  63

Query  123  --ITMEVALEQGVKPLRAFM---LDQTRENDLAMFAQM--AKAGEFKGPEEVPLGILVPA  175
               +ME A  + V PLR+FM   LD   + +L   +Q   +K    K++ +  L ++VPA
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD-DLLLVVPA  122

Query  176  FVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQ  235
            FV SEL+++FQIGF I+IPF++IDL+V++IL+ALGM MV+P TI+LP+K++LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  236  LLMGSLAQSFYS  247
             L+++L   FYS
Sbjct  183  RLLDGL---FYS  191

285) fliP3 in NC_013961


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (435),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 87/192 (46%), Positives = 135/192 (71%), Gaps = 13/192 (6%)

Query  64   TGFTRIIIVLGLMRNALGTPTSPPNQVLVGLALFLTFYVMSPVFNQIYEQAWQPLQEDK-  122
            T+F +I +VL + RNA+G   +PPN  L G+AL  T+++M+PVF+++ ++  + L E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV-KKLPEHLD  63

Query  123  --ITMEVALEQGVKPLRAFM---LDQTRENDLAMFAQM--AKAGEFKGPEEVPLGILVPA  175
               +ME A  + V PLR+FM   LD   + +L   +Q   +K    K++ +  L ++VPA
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD-DLLLVVPA  122

Query  176  FVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQ  235
            FV SEL+++FQIGF I+IPF++IDL+V++IL+ALGM MV+P TI+LP+K++LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  236  LLMGSLAQSFYS  247
             L+++L   FYS
Sbjct  183  RLLDGL---FYS  191

286) fliP in NC_011144


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (435),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 136/189 (72%), Gaps = 11/189 (5%)

Query  53   VIMTTSFVRIVVVLSLLRTALGVQQSPPNAVIISLALFLTAIVMGPTFERSYQEGVKPLL  112
            +I+ T+F++I +VL + R A+GVQQ+PPN  + ++AL  T ++M+P F     + VK L 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKL-  58

Query  113  DQQIELPQAFDAAG----APVKTFMLSQVDPEDLALFVRLSRIPRPATMEDTPLR----V  164
             ++++   A ++AG     P++TFM  ++DP+  + ++  ++  +P  M D + R    +
Sbjct  59   PEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  165  VTPAFMISELKRAFEIGFLLFIPFLVIDLVVASVLMSMGMMMLPPVTVSLPFKLIFFVLV  224
            V PAF++SEL+ +F+IGFL++IPF+VIDL+V+++L+++GM M++P+T+SLP+K+++FVLV
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  225  DGW-RLVAG  232
            DGW RL+ G
Sbjct  179  DGWTRLLDG  187

287) fliP in NC_017390


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (433),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 88/192 (46%), Positives = 135/192 (71%), Gaps = 13/192 (6%)

Query  64   TGFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVMSPVFNQIYQQAWQPLQEDK-  122
            T+F +I +VL + RNA+G   APPN  L G+AL  T+++M+PVF+++ ++  + L E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV-KKLPEHLD  63

Query  123  --ITMEVALEQGVKPLRAFM---LDQTRENDLAMFAQI--AKAGEFKGPEEVPLGILVPA  175
               +ME A  + V PLR+FM   LD   + +L   +Q   +K    K++ +  L ++VPA
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD-DLLLVVPA  122

Query  176  FVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQ  235
            FV SEL+++FQIGF I+IPF++IDL+V++IL+ALGM MV+P TI+LP+K++LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  236  LLMGSLAQSFYS  247
             L+++L   FYS
Sbjct  183  RLLDGL---FYS  191

288) fliP in NC_012214


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (433),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 88/192 (46%), Positives = 135/192 (71%), Gaps = 13/192 (6%)

Query  64   TGFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVMSPVFNQIYQQAWQPLQEDK-  122
            T+F +I +VL + RNA+G   APPN  L G+AL  T+++M+PVF+++ ++  + L E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV-KKLPEHLD  63

Query  123  --ITMEVALEQGVKPLRAFM---LDQTRENDLAMFAQI--AKAGEFKGPEEVPLGILVPA  175
               +ME A  + V PLR+FM   LD   + +L   +Q   +K    K++ +  L ++VPA
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD-DLLLVVPA  122

Query  176  FVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQ  235
            FV SEL+++FQIGF I+IPF++IDL+V++IL+ALGM MV+P TI+LP+K++LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  236  LLMGSLAQSFYS  247
             L+++L   FYS
Sbjct  183  RLLDGL---FYS  191

289) M301_1012 in NC_014207


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (433),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 131/190 (69%), Gaps = 11/190 (5%)

Query  76   TGFTRIIIVLSLLRQALGTQSAPPNQVMVGLALFLTFFVMSPVIDKIYVDAYQPLSENK-  134
            T+F +I +VL + R+A+G Q APPN  + G+AL  T+F+M+PV+  +  D  + L+E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  135  --ITMQEAMDKGAAPLKAFMMKQ-TREGDLALFVNMAKI---EKIETPDQVPLLVLVPAF  188
               +M+ A      PL++FM ++   + +  L+ N  ++   E  + + +  LL++VPAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  189  MTSELKTAFQIGFAIFIPFLIIDMVVASVLMAMGMMMVSPSIVSLPFKLMLFVLVDGWQL  248
            + SEL+++FQIGF I+IPF++ID++V+++L+A+GM MV+P  +SLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  249  LLGSLVQSFY  258
            LL++L   FY
Sbjct  184  LLDGL---FY  190

290) fliP in NC_021499


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (436),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 82/191 (43%), Positives = 135/191 (71%), Gaps = 12/191 (6%)

Query  67   TSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTMFIMAPVF----DRVNRDALQPYL  122
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF    DRV++  L   L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  123  NEQLSAPDALAKAEV-PIKDFML----AQTRASDLELFMRLSKRTDIASPDAAPLTILVP  177
             + ++A ++ +K  V P++ FM     ++ ++  LE   R+  +     +    L ++VP
Sbjct  63   -DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  178  AFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGW  237
            AFV SEL+++FQIGF+I+IPF++IDL+V+++L+A+GM M++P+ ISLP+KI+LFVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  238  ALVIGTLASSF  248
            + +++ L  S+
Sbjct  182  TRLLDGLFYSY  192

291) NH44784_042871 in NC_021285


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (436),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 129/190 (68%), Gaps = 11/190 (5%)

Query  77   TGFTRIIIVLGLLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYKPLSEGSI  136
            T+F +I +VL + R+A+G   +PPN  L G+AL  T++ M+PVF  +  D  K L+E   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  137  QF---EAAVERAAGPLRTFMLHQ-TRENDLALFANLAK---QPALEDPSQVPLRILVPAF  189
             F   E+A  +   PLRTFM ++   + +  L+ N  +   +   + +S+  L ++VPAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  190  ITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNL  249
            + SEL+++FQIGF I+IPF++IDL+V+++L+ALGM MV+P+T++LP+K++LFVL DGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  250  LMGSLAQSFY  259
            L+++L   FY
Sbjct  184  LLDGL---FY  190

292) fliP in NC_017268


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (436),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 129/190 (68%), Gaps = 6/190 (3%)

Query  87   TAFLRLSIVLDFIKRALSLQQVPPTQVLHGIALFLALFIMWPVFTEIYAKSFKPLTDGQ-  145
            TAFL++++VL + + A+++QQ PP   L GIAL  +LFIM PVF+E+ +   K L +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  146  --VDIQTAYTEAERPLRVFMYRQMAHDPSSVRLCMSMAKLPK--PDTLADVPTYVLIPAF  201
                +++A  +   PLR FM R++  D  +  L  +    PK  +D  +     +++PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  202  ILHELTVAFQIGIFLYLPFIIVDMVVASILMSMGMIMLPPVQISLPFKLVLFVLVDGWNL  261
            +L EL  +FQIG+++Y+PFI++D++V++IL+++GM M++P+ ISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  262  LIDRLFHSFL  271
            L+D LF S++
Sbjct  184  LLDGLFYSYM  193

293) fliP in NC_016844


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (436),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 129/190 (68%), Gaps = 6/190 (3%)

Query  87   TAFLRLSIVLDFIKRALSLQQVPPTQVLHGIALFLALFIMWPVFTEIYAKSFKPLTDGQ-  145
            TAFL++++VL + + A+++QQ PP   L GIAL  +LFIM PVF+E+ +   K L +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  146  --VDIQTAYTEAERPLRVFMYRQMAHDPSSVRLCMSMAKLPK--PDTLADVPTYVLIPAF  201
                +++A  +   PLR FM R++  D  +  L  +    PK  +D  +     +++PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  202  ILHELTVAFQIGIFLYLPFIIVDMVVASILMSMGMIMLPPVQISLPFKLVLFVLVDGWNL  261
            +L EL  +FQIG+++Y+PFI++D++V++IL+++GM M++P+ ISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  262  LIDRLFHSFL  271
            L+D LF S++
Sbjct  184  LLDGLFYSYM  193

294) fliP in NC_021179


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (436),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 129/190 (68%), Gaps = 6/190 (3%)

Query  87   TAFLRLSIVLDFIKRALSLQQVPPTQVLHGIALFLALFIMWPVFTEIYAKSFKPLTDGQ-  145
            TAFL++++VL + + A+++QQ PP   L GIAL  +LFIM PVF+E+ +   K L +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  146  --VDIQTAYTEAERPLRVFMYRQMAHDPSSVRLCMSMAKLPK--PDTLADVPTYVLIPAF  201
                +++A  +   PLR FM R++  D  +  L  +    PK  +D  +     +++PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  202  ILHELTVAFQIGIFLYLPFIIVDMVVASILMSMGMIMLPPVQISLPFKLVLFVLVDGWNL  261
            +L EL  +FQIG+++Y+PFI++D++V++IL+++GM M++P+ ISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  262  LIDRLFHSFL  271
            L+D LF S++
Sbjct  184  LLDGLFYSYM  193

295) fliP in NC_018722


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (436),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 129/190 (68%), Gaps = 6/190 (3%)

Query  87   TAFLRLSIVLDFIKRALSLQQVPPTQVLHGIALFLALFIMWPVFTEIYAKSFKPLTDGQ-  145
            TAFL++++VL + + A+++QQ PP   L GIAL  +LFIM PVF+E+ +   K L +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  146  --VDIQTAYTEAERPLRVFMYRQMAHDPSSVRLCMSMAKLPK--PDTLADVPTYVLIPAF  201
                +++A  +   PLR FM R++  D  +  L  +    PK  +D  +     +++PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  202  ILHELTVAFQIGIFLYLPFIIVDMVVASILMSMGMIMLPPVQISLPFKLVLFVLVDGWNL  261
            +L EL  +FQIG+++Y+PFI++D++V++IL+++GM M++P+ ISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  262  LIDRLFHSFL  271
            L+D LF S++
Sbjct  184  LLDGLFYSYM  193

296) fliP in NC_021490


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (436),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 129/190 (68%), Gaps = 6/190 (3%)

Query  87   TAFLRLSIVLDFIKRALSLQQVPPTQVLHGIALFLALFIMWPVFTEIYAKSFKPLTDGQ-  145
            TAFL++++VL + + A+++QQ PP   L GIAL  +LFIM PVF+E+ +   K L +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  146  --VDIQTAYTEAERPLRVFMYRQMAHDPSSVRLCMSMAKLPK--PDTLADVPTYVLIPAF  201
                +++A  +   PLR FM R++  D  +  L  +    PK  +D  +     +++PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  202  ILHELTVAFQIGIFLYLPFIIVDMVVASILMSMGMIMLPPVQISLPFKLVLFVLVDGWNL  261
            +L EL  +FQIG+++Y+PFI++D++V++IL+++GM M++P+ ISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  262  LIDRLFHSFL  271
            L+D LF S++
Sbjct  184  LLDGLFYSYM  193

297) fliP in NC_000919


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (436),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 129/190 (68%), Gaps = 6/190 (3%)

Query  87   TAFLRLSIVLDFIKRALSLQQVPPTQVLHGIALFLALFIMWPVFTEIYAKSFKPLTDGQ-  145
            TAFL++++VL + + A+++QQ PP   L GIAL  +LFIM PVF+E+ +   K L +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  146  --VDIQTAYTEAERPLRVFMYRQMAHDPSSVRLCMSMAKLPK--PDTLADVPTYVLIPAF  201
                +++A  +   PLR FM R++  D  +  L  +    PK  +D  +     +++PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  202  ILHELTVAFQIGIFLYLPFIIVDMVVASILMSMGMIMLPPVQISLPFKLVLFVLVDGWNL  261
            +L EL  +FQIG+++Y+PFI++D++V++IL+++GM M++P+ ISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  262  LIDRLFHSFL  271
            L+D LF S++
Sbjct  184  LLDGLFYSYM  193

298) fliP in NC_016848


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (436),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 129/190 (68%), Gaps = 6/190 (3%)

Query  87   TAFLRLSIVLDFIKRALSLQQVPPTQVLHGIALFLALFIMWPVFTEIYAKSFKPLTDGQ-  145
            TAFL++++VL + + A+++QQ PP   L GIAL  +LFIM PVF+E+ +   K L +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  146  --VDIQTAYTEAERPLRVFMYRQMAHDPSSVRLCMSMAKLPK--PDTLADVPTYVLIPAF  201
                +++A  +   PLR FM R++  D  +  L  +    PK  +D  +     +++PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  202  ILHELTVAFQIGIFLYLPFIIVDMVVASILMSMGMIMLPPVQISLPFKLVLFVLVDGWNL  261
            +L EL  +FQIG+++Y+PFI++D++V++IL+++GM M++P+ ISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  262  LIDRLFHSFL  271
            L+D LF S++
Sbjct  184  LLDGLFYSYM  193

299) fliP in NC_016843


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (436),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 129/190 (68%), Gaps = 6/190 (3%)

Query  87   TAFLRLSIVLDFIKRALSLQQVPPTQVLHGIALFLALFIMWPVFTEIYAKSFKPLTDGQ-  145
            TAFL++++VL + + A+++QQ PP   L GIAL  +LFIM PVF+E+ +   K L +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  146  --VDIQTAYTEAERPLRVFMYRQMAHDPSSVRLCMSMAKLPK--PDTLADVPTYVLIPAF  201
                +++A  +   PLR FM R++  D  +  L  +    PK  +D  +     +++PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  202  ILHELTVAFQIGIFLYLPFIIVDMVVASILMSMGMIMLPPVQISLPFKLVLFVLVDGWNL  261
            +L EL  +FQIG+++Y+PFI++D++V++IL+++GM M++P+ ISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  262  LIDRLFHSFL  271
            L+D LF S++
Sbjct  184  LLDGLFYSYM  193

300) fliP in NC_016842


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (436),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 129/190 (68%), Gaps = 6/190 (3%)

Query  87   TAFLRLSIVLDFIKRALSLQQVPPTQVLHGIALFLALFIMWPVFTEIYAKSFKPLTDGQ-  145
            TAFL++++VL + + A+++QQ PP   L GIAL  +LFIM PVF+E+ +   K L +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  146  --VDIQTAYTEAERPLRVFMYRQMAHDPSSVRLCMSMAKLPK--PDTLADVPTYVLIPAF  201
                +++A  +   PLR FM R++  D  +  L  +    PK  +D  +     +++PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  202  ILHELTVAFQIGIFLYLPFIIVDMVVASILMSMGMIMLPPVQISLPFKLVLFVLVDGWNL  261
            +L EL  +FQIG+++Y+PFI++D++V++IL+++GM M++P+ ISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  262  LIDRLFHSFL  271
            L+D LF S++
Sbjct  184  LLDGLFYSYM  193

301) fliP in NC_010741


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (436),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 129/190 (68%), Gaps = 6/190 (3%)

Query  87   TAFLRLSIVLDFIKRALSLQQVPPTQVLHGIALFLALFIMWPVFTEIYAKSFKPLTDGQ-  145
            TAFL++++VL + + A+++QQ PP   L GIAL  +LFIM PVF+E+ +   K L +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  146  --VDIQTAYTEAERPLRVFMYRQMAHDPSSVRLCMSMAKLPK--PDTLADVPTYVLIPAF  201
                +++A  +   PLR FM R++  D  +  L  +    PK  +D  +     +++PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  202  ILHELTVAFQIGIFLYLPFIIVDMVVASILMSMGMIMLPPVQISLPFKLVLFVLVDGWNL  261
            +L EL  +FQIG+++Y+PFI++D++V++IL+++GM M++P+ ISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  262  LIDRLFHSFL  271
            L+D LF S++
Sbjct  184  LLDGLFYSYM  193

302) fliP in NC_021508


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  119 bits (436),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 129/190 (68%), Gaps = 6/190 (3%)

Query  87   TAFLRLSIVLDFIKRALSLQQVPPTQVLHGIALFLALFIMWPVFTEIYAKSFKPLTDGQ-  145
            TAFL++++VL + + A+++QQ PP   L GIAL  +LFIM PVF+E+ +   K L +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  146  --VDIQTAYTEAERPLRVFMYRQMAHDPSSVRLCMSMAKLPK--PDTLADVPTYVLIPAF  201
                +++A  +   PLR FM R++  D  +  L  +    PK  +D  +     +++PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  202  ILHELTVAFQIGIFLYLPFIIVDMVVASILMSMGMIMLPPVQISLPFKLVLFVLVDGWNL  261
            +L EL  +FQIG+++Y+PFI++D++V++IL+++GM M++P+ ISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  262  LIDRLFHSFL  271
            L+D LF S++
Sbjct  184  LLDGLFYSYM  193

303) ENC_28610 in NC_021046


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  118 bits (430),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 86/191 (46%), Positives = 139/191 (73%), Gaps = 11/191 (5%)

Query  64   TGFTRIVIVLGLMRNALGTPTAPPNQVLVGLALFLTFFVMSPVLNQIYEQAWQ-PLQANK  122
            T+F +I +VL + RNA+G   APPN  L G+AL  T+F+M+PV++++ ++  + P + + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  123  IT-METALKEGVKPLRAFM---LEQTREADL-AMFARI-AKTPTLTGPEDVPLSILVPSF  176
            ++ ME+A K+ V PLR+FM   L+   +++L     R+ +K  +  ++ D  L ++VP+F
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD-DLLLVVPAF  123

Query  177  VTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQL  236
            V SEL+++FQIGF I+IPF++IDL+V++IL+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  237  LVGSLAQSFYS  247
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

304) fliP in NC_017445


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  118 bits (432),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 87/192 (46%), Positives = 135/192 (71%), Gaps = 13/192 (6%)

Query  64   TGFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVMSPVFNQIYEQAWQPLQEDK-  122
            T+F +I +VL + RNA+G   APPN  L G+AL  T+++M+PVF+++ ++  + L E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV-KKLPEHLD  63

Query  123  --ITMEVALEQGVKPLRAFM---LDQTRENDLAMFAQI--AKAGEFKGPEEVPLGILVPA  175
               +ME A  + V PLR+FM   LD   + +L   +Q   +K    K++ +  L ++VPA
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD-DLLLVVPA  122

Query  176  FVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQ  235
            FV SEL+++FQIGF I+IPF++IDL+V++IL+ALGM MV+P TI+LP+K++LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  236  LLMGSLAQSFYN  247
             L+++L   FY+
Sbjct  183  RLLDGL---FYS  191

305) fliP in NC_007404


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  118 bits (430),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 77/190 (41%), Positives = 127/190 (67%), Gaps = 11/190 (5%)

Query  71   TSFTRIIIVLSLLRHALGTQSSPPNQVLIGLALFLTLFVMGPTFDKIYVEAYQPLAENR-  129
            T+F +I +VL + R+A+G Q +PPN  L G+AL  TLF+M+P F  +  +  + L+E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  130  --IQMQEALDKGAVPLRAFMLKQTRESDLALFVKMSRSPAPKTAADIPMR----VLIPAY  183
                M+ A      PLR+FM ++      + ++  ++   PK  AD + R    +++PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  184  ITSELKTAFQIGFAVFIPFLIIDMVVASILMAMGMMMVSPAIVALPFKIILFVLVDGWNL  243
            + SEL+++FQIGF ++IPF++ID++V++IL+A+GM MV+P  ++LP+KI+LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  244  LLGSLAQSFY  253
            LL++L   FY
Sbjct  184  LLDGL---FY  190

306) lfiP in NC_013716


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  118 bits (430),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 75/184 (41%), Positives = 130/184 (71%), Gaps = 14/184 (7%)

Query  65   MMTC--FTRFIIVLSLLRQALGLQQTPPNRILIGIALCLTMLVMRPIWLNIYDRAVVPFE  122
            M+ C  F ++ +VL + R+A+G+QQ+PPN  L GIAL  T+++M P+  ++ DR  V   
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDR--VKKL  58

Query  123  NDQMTLSDALSTAAT----PLKRFMLAQTNKKAMAQIMTIA------DVKGDAADQDLTI  172
             +++    A+ +A+     PL+ FM  + +    ++++  +      ++ + A+ +DL +
Sbjct  59   PEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  173  VVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLI  232
            VVPA+VLSEL+++FQIGF+IYIPF+VIDLIV+++L+A+GM M++P+ +SLP+K++LFVL+
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  233  DGWS  236
            DGW+
Sbjct  179  DGWT  182

307) Calkro_0478 in NC_014720


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  117 bits (428),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 80/193 (42%), Positives = 132/193 (69%), Gaps = 16/193 (8%)

Query  66   LIMMTSFTRILIVLGFIRNALGTQQMPPNQILIGLALFLTFFVMAPV----TDKIYTQAY  121
            +I+ T+F +I +VL + RNA+G QQ PPN  L G+AL  T+F+MAPV     D++  +  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV--KKL  58

Query  122  QPYINGRITSQEALKRAEEPLKEFMLKNTRKKDLDLFVKLSNVNPNTNVKDLP-------  174
               ++   + + A K+  EPL+ FM   TR+ D D+   L +       K+++       
Sbjct  59   PEHLDTFAAMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDD  115

Query  175  LRVVVPAFIISELKSAFEMGFLIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLF  234
            L +VVPAF++SEL+++F++GFLIY+PF++ID++V++IL+++GM M++P+ ISLP+KILLF
Sbjct  116  LLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLF  175

Query  235  ILVDGWNLVVESL  247
            +LVDGW  ++++L
Sbjct  176  VLVDGWTRLLDGL  188

308) Cwoe_0066 in NC_013739


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  117 bits (427),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 85/195 (44%), Positives = 132/195 (68%), Gaps = 16/195 (8%)

Query  28   CLTGFTRILIVLGFIRTAIGTPTAPPNQVLVGIALFLTLFVMAPTFTQIKETAWDPLEAG  87
            C T+F +I +VL + R AIG   APPN  L GIAL  TLF+MAP F+++ +     L + 
Sbjct  4    C-TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV-KKL-PE  60

Query  88   RINT----AQAVRRAEEPLRQFMFEQTRTKDLALFVRLSRTREQ--PRTRADIPTT----  137
            +++T      A ++  EPLR FM   TR  D  +  +L    ++  P+  AD ++     
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  138  VLIPAFIVSELKTAFQIGFMIFLPFLVIDLIVASTLMSMGMIMLPPVFISLPFKILLFVL  197
            +++PAF++SEL+++FQIGF+I++PF+VIDLIV++ L+++GM M++P+ ISLP+KILLFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  198  VDGWALITDSLVRSF  212
            VDGW+ + D+L  S+
Sbjct  178  VDGWTRLLDGLFYSY  192

309) Athe_2157 in NC_012034


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  117 bits (428),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 79/189 (42%), Positives = 129/189 (69%), Gaps = 16/189 (8%)

Query  70   TSFTRILIVLGFIRNALGTQQMPPNQILIGLALFLTFFVMAPV----TDKIYIQAYQPYI  125
            T+F +I +VL + RNA+G QQ PPN  L G+AL  T+F+MAPV     D++  +     +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV--KKLPEHL  62

Query  126  NGRITSQEALKRAEEPLKEFMLKNTRKKDLDLFVKLSNVNPNTNVKDLP-------LRVV  178
            +   + + A K+  EPL+ FM   TR+ D D+   L +       K+++       L +V
Sbjct  63   DTFAAMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  179  VPAFIISELKSAFEMGFLIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVD  238
            VPAF++SEL+++F++GFLIY+PF++ID++V++IL+++GM M++P+ ISLP+KILLF+LVD
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  239  GWNLVIESL  247
            GW  ++++L
Sbjct  180  GWTRLLDGL  188

310) Calla_1939 in NC_015949


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  117 bits (428),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 79/189 (42%), Positives = 129/189 (69%), Gaps = 16/189 (8%)

Query  71   TSFTRILIVLGFVRNALGTQQMPPNQILIGLALFLTFFVMAPV----TDKIYTQAYQPYI  126
            T+F +I +VL + RNA+G QQ PPN  L G+AL  T+F+MAPV     D++  +     +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV--KKLPEHL  62

Query  127  NGRITSQEALKRAEEPLKEFMLKNTRKKDLDLFVKLSNVNPNTNVKDLP-------LRVV  179
            +   + + A K+  EPL+ FM   TR+ D D+   L +       K+++       L +V
Sbjct  63   DTFAAMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  180  VPAFIISELKSAFEMGFLIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVD  239
            VPAF++SEL+++F++GFLIY+PF++ID++V++IL+++GM M++P+ ISLP+KILLF+LVD
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  240  GWNLVVESL  248
            GW  ++++L
Sbjct  180  GWTRLLDGL  188

311) fliP in NC_007348


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  117 bits (427),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 83/190 (44%), Positives = 130/190 (69%), Gaps = 8/190 (4%)

Query  82   TGFTRIVIVLGLLRNALGTASSPPNQVLVGLSLFLTFFVMSPVLDRVYNDAYKPLSENR-  140
            T+F +I +VL + RNA+G   +PPN  L G++L  T+F+M+PV+  +  D  K L+E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  141  --ISLETAMAKAAEPLKGFM---LKQTREKDLAMFAQMAKAPEMQG-PEEVPMSILVPAF  194
               ++E+A     EPL+ FM   L    + +L   +Q   + EM + +    + ++VPAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  195  VTSELKTAFQIGFTIFIPFLIIDLVVASVLMAMGMMMVPPATISLPFKLMLFVLVDGWQL  254
            V SEL+++FQIGF I+IPF++IDL+V+++L+A+GM MV+P TISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  255  LLGSLAQSFM  264
            LL++L  S+M
Sbjct  184  LLDGLFYSYM  193

312) Calhy_0599 in NC_014652


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  117 bits (427),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 79/189 (42%), Positives = 129/189 (69%), Gaps = 16/189 (8%)

Query  71   TSFTRILIVLGFVRNALGTQQMPPNQILIGLALFLTFFVMAPV----TDKIYTQAYQPYI  126
            T+F +I +VL + RNA+G QQ PPN  L G+AL  T+F+MAPV     D++  +     +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV--KKLPEHL  62

Query  127  NGRITSQEALKRAEEPLKEFMLKNTRKKDLDLFVKLSNVNPNTNVKDLP-------LRVV  179
            +   + + A K+  EPL+ FM   TR+ D D+   L +       K+++       L +V
Sbjct  63   DTFAAMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  180  VPAFIISELKSAFEMGFLIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVD  239
            VPAF++SEL+++F++GFLIY+PF++ID++V++IL+++GM M++P+ ISLP+KILLF+LVD
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  240  GWNLVVESL  248
            GW  ++++L
Sbjct  180  GWTRLLDGL  188

313) Calkr_0422 in NC_014721


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  117 bits (427),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 79/189 (42%), Positives = 129/189 (69%), Gaps = 16/189 (8%)

Query  71   TSFTRILIVLGFVRNALGTQQMPPNQILIGLALFLTFFVMAPV----TDKIYTQAYQPYI  126
            T+F +I +VL + RNA+G QQ PPN  L G+AL  T+F+MAPV     D++  +     +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV--KKLPEHL  62

Query  127  NGRITSQEALKRAEEPLKEFMLKNTRKKDLDLFVKLSNVNPNTNVKDLP-------LRVV  179
            +   + + A K+  EPL+ FM   TR+ D D+   L +       K+++       L +V
Sbjct  63   DTFAAMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  180  VPAFIISELKSAFEMGFLIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVD  239
            VPAF++SEL+++F++GFLIY+PF++ID++V++IL+++GM M++P+ ISLP+KILLF+LVD
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  240  GWNLVVESL  248
            GW  ++++L
Sbjct  180  GWTRLLDGL  188

314) fliP in NC_010338


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  117 bits (426),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 79/188 (43%), Positives = 128/188 (69%), Gaps = 9/188 (4%)

Query  74   VIMTTSFVRIVVVLGLLRTAIGVQQSPPNPVIISLALFLTAIVMGPTFEKSYDDGIKPL-  132
            +I+ T+F++I +VL + R AIGVQQ+PPN  + ++AL  T ++M+P F    +D +K L 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLP  59

Query  133  --LDKQIEMPEAFDAAAAPVKVFMLRQVDQDDLALFI----RLSKIEKPKTAVDTPLKVV  186
              LD    M  A      P++ FM R++D D  + ++    R+   E +  A    L +V
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  187  TPAFMISELKRAFEIGFLLFIPFLVIDLVVASVLMSMGMMMLPPATVSLPFKLIFFVLVD  246
             PAF++SEL+ +F+IGFL++IPF+VIDL+V+++L+++GM M++P T+SLP+K+++FVLVD
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  247  GW-RLVAG  253
            GW RL+ G
Sbjct  180  GWTRLLDG  187

315) fliP in NC_010170


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  117 bits (426),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 129/190 (68%), Gaps = 11/190 (5%)

Query  79   TGFTRIIIVLGLLRSALGTAMSPPNHVLIGLALFLTFYTMSPVFDRIYSEAYKPLSEGSI  138
            T+F +I +VL + R+A+G   +PPN  L G+AL  T++ M+PVF  + ++  K L+E   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  139  PF---ETAVERAAAPLHTFMLHQ-TRENDLTLFANLAN---QPALEDPSQVPMKILVPAF  191
             F   E+A  +   PL+TFM ++   + +  L+ N      +   + +S+  + ++VPAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  192  ITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNL  251
            + SEL+++FQIGF I+IPF++IDL+V+++L+ALGM MV+P+T++LP+K++LFVL DGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  252  LLGSLASSFY  261
            LL++L   FY
Sbjct  184  LLDGL---FY  190

316) lfiP in NC_017626


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 76/185 (42%), Positives = 130/185 (71%), Gaps = 16/185 (8%)

Query  63   MMTC--FTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPVWLNIYDHAV-VPF  119
            M+ C  F ++ +VL + R+A+G+QQ+PPN  L GIAL+ T+++M PV  ++ D+   +P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLP-  59

Query  120  ENDQITLTDALSTAAT----PLKRFMLAQTDKKAMAQIMTIG------GAKGNAADQDLS  169
              +++    A+ +A+     PL+ FM  + D    ++++            ++A+ +DL 
Sbjct  60   --EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  170  IVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVL  229
            +VVPA+VLSEL+++FQIGF+IYIPF+VIDLIV+++L+A+GM M++P+ +SLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  230  IDGWS  234
            +DGW+
Sbjct  178  VDGWT  182

317) fliP in NC_010498


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  116 bits (423),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 76/185 (42%), Positives = 130/185 (71%), Gaps = 16/185 (8%)

Query  63   MMTC--FTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPVWLNIYDHAV-VPF  119
            M+ C  F ++ +VL + R+A+G+QQ+PPN  L GIAL+ T+++M PV  ++ D+   +P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLP-  59

Query  120  ENDQITLTDALSTAAT----PLKRFMLAQTDKKAMAQIMTIG------GAKGNAADQDLT  169
              +++    A+ +A+     PL+ FM  + D    ++++            ++A+ +DL 
Sbjct  60   --EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  170  IVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVL  229
            +VVPA+VLSEL+++FQIGF+IYIPF+VIDLIV+++L+A+GM M++P+ +SLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  230  IDGWS  234
            +DGW+
Sbjct  178  VDGWT  182

318) fliP in NC_011751


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 76/185 (42%), Positives = 130/185 (71%), Gaps = 16/185 (8%)

Query  63   MMTC--FTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPVWLNIYDHAV-VPF  119
            M+ C  F ++ +VL + R+A+G+QQ+PPN  L GIAL+ T+++M PV  ++ D+   +P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLP-  59

Query  120  ENDQITLTDALSTAAT----PLKRFMLAQTDKKAMAQIMTIG------GAKGNAADQDLS  169
              +++    A+ +A+     PL+ FM  + D    ++++            ++A+ +DL 
Sbjct  60   --EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  170  IVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVL  229
            +VVPA+VLSEL+++FQIGF+IYIPF+VIDLIV+++L+A+GM M++P+ +SLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  230  IDGWS  234
            +DGW+
Sbjct  178  VDGWT  182

319) fliP in NC_016745


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 132/184 (72%), Gaps = 8/184 (4%)

Query  62   SFTRIIVVLAVLRQALGLQQSPPNRVLIGIALSLTLLIMRPVLQDIYHHA--FVPYDNGT  119
            +F +I +VL + R+A+G+QQ+PPN  L GIAL+ TL+IM PV+ ++ ++   +    +  
Sbjct  6    AFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDTF  65

Query  120  IGFEQALMTAKAPLQTFMLAQTRETDLE-QILNIAQE--PTDLSPEEVPFEVL--IPAFV  174
             + E A      PL+TFM ++  + D++ ++L+ +Q   P +++      ++L  +PAFV
Sbjct  66   AAMESAGKHVVEPLRTFM-TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  175  LSELKTAFQIGFMLFIPFLVIDLVVASVLMAMGMMMLSPLVISLPFKLMLFVLVDGWSMT  234
            LSEL+++FQIGF+++IPF+VIDL+V+++L+A+GM M++P+ ISLP+K++LFVLVDGW+  
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  235  VGTL  238
            ++ L
Sbjct  185  LDGL  188

320) Daud_1753 in NC_010424


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 75/184 (41%), Positives = 127/184 (70%), Gaps = 13/184 (7%)

Query  75   LVMVTSFTRIVVVLAFLRAGLGIYQAPPGSVLIGLALFLTVFIMAPVYAQVNEQAIEPFL  134
            +++ T+F +I +VL + R ++G+ QAPP   L G+AL  T+FIMAPV++++ ++     L
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--L  58

Query  135  RGEIDQVEAQERAA----GPLREFMLRH----TREKDLDLFVRM--AEIENPVPNELPLT  184
              ++D   A E A+     PLR FM R+     +   L+   RM   E+ +  + +  L 
Sbjct  59   PEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD-DLL  117

Query  185  VVIPAFIISELKTAFTMGFMLYLPFLIIDMVVASILLSMGMFMLPPVMISLPFKLLLFVL  244
            +V+PAF++SEL+++F +GF++Y+PF++ID++V++ILL++GM M++P+ ISLP+K+LLFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  245  VDGW  248
            VDGW
Sbjct  178  VDGW  181

321) fliP in NC_015856


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  116 bits (425),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 80/197 (41%), Positives = 131/197 (67%), Gaps = 23/197 (11%)

Query  70   TSFTRIIIVLGLLRTAIGAQSSPPNQILVGLALFLTFFVMSPVFD------KAYSDAYKP  123
            T+F +I +VL + R AIG Q +PPN  L G+AL  T+F+M+PVF       K  ++    
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  124  FSDNKISAEQALERGIQPFKQFMLKQTREGDLALFARLAQAPQMQGPEEVP-------LR  176
            F+    ++ +     ++P++ FM   TR+ D  + ++L +  Q   P E++       L 
Sbjct  65   FAAMESAGKHV----VEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  177  ILVPAFVISELKTAFQIGFTIFIPFLIVDLVVASVLMSMGMMMVPPATISLPFKLMLFVL  236
            ++VPAFV+SEL+++FQIGF I+IPF+++DL+V+++L+++GM MV+P TISLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  237  VDGWQLLIGALAQSFYT  253
            VDGW  L+++L   FY+
Sbjct  178  VDGWTRLLDGL---FYS  191

322) fliP in NC_009439


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  116 bits (424),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 78/188 (42%), Positives = 128/188 (69%), Gaps = 14/188 (7%)

Query  77   TSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTLFIMAPIF----DRINT--DALQP  130
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  TLFIMAP+F    DR++   + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  131  YLNEEIVAQEALTRAEGPIRDFM---LAQTRESDL-ALFVRLSKRTDLAGVEDVPLTILV  186
            +   E  +++ +     P+R FM   L    +++L     R+  +          L ++V
Sbjct  65   FAAMESAGKHVV----EPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  187  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSPLIISLPFKIMLFVLVDG  246
            PAFV SEL+++FQIGF+I+IPF++ID++V++IL+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  247  WALIMGTL  254
            W+ +++ L
Sbjct  181  WTRLLDGL  188

323) fliP in NC_007712


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  116 bits (423),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 83/191 (44%), Positives = 129/191 (68%), Gaps = 11/191 (5%)

Query  70   TSFTRIIIVLGLLRSAIGTPSAPPNQVLLGLALFLTFFVMSPVLDSIYTEAYLPLSENK-  128
            T+F +I +VL + R+AIG   APPN  L G+AL  T+F+M+PV+  +  +    L+E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  129  --ISMQTALERGSQPLRAFMLRQ-TREADLGLFARLANVPPLEGPEAVPMRILL---PAY  182
               +M++A  +  +PLR+FM R+   + +  L+     + P E ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  183  VTSELKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQL  242
            V SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  243  LLSSLAQSFYS  253
            LL +L   FYS
Sbjct  184  LLDGL---FYS  191

324) NT01EI_2431 in NC_012779


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  116 bits (423),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 83/194 (43%), Positives = 127/194 (66%), Gaps = 17/194 (8%)

Query  63   TSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVLD------KIYQEAYQP  116
            T+F +I +VL + RNA+G   APPN  L G+AL  T+FIM+PV+       K   E  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  117  FSEQKISMETALDRGAKPLRAFMLRQ-TRETDLALFSRLAKQPEMQGPEDVPMRILL---  172
            F+    +ME+A  +   PLR+FM R+   + +  L+    +    + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  173  PAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDG  232
            PA+V SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  233  WQLLLGSLAQSFYT  246
            W  LL++L   FY+
Sbjct  181  WTRLLDGL---FYS  191

325) ETAC_10205 in NC_020796


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  116 bits (423),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 82/191 (43%), Positives = 129/191 (68%), Gaps = 11/191 (5%)

Query  63   TSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVLDKIYQDAYQPFSEQK-  121
            T+F +I +VL + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  122  --ISMETALDRGAKPLRAFMLRQ-TRETDLALFSRLAKQPEMQGPEDVPMRILL---PAY  175
               +ME+A  +   PLR+FM R+   + +  L+    +    + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  176  VTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQL  235
            V SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  236  LLGSLAQSFYT  246
            LL++L   FY+
Sbjct  184  LLDGL---FYS  191

326) fliP in NC_013508


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  116 bits (423),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 82/191 (43%), Positives = 129/191 (68%), Gaps = 11/191 (5%)

Query  63   TSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVLDKIYQDAYQPFSEQK-  121
            T+F +I +VL + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  122  --ISMETALDRGAKPLRAFMLRQ-TRETDLALFSRLAKQPEMQGPEDVPMRILL---PAY  175
               +ME+A  +   PLR+FM R+   + +  L+    +    + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  176  VTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQL  235
            V SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  236  LLGSLAQSFYT  246
            LL++L   FY+
Sbjct  184  LLDGL---FYS  191

327) fliP in NC_017309


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  116 bits (423),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 82/191 (43%), Positives = 129/191 (68%), Gaps = 11/191 (5%)

Query  63   TSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVLDKIYQDAYQPFSEQK-  121
            T+F +I +VL + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  122  --ISMETALDRGAKPLRAFMLRQ-TRETDLALFSRLAKQPEMQGPEDVPMRILL---PAY  175
               +ME+A  +   PLR+FM R+   + +  L+    +    + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  176  VTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQL  235
            V SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  236  LLGSLAQSFYT  246
            LL++L   FY+
Sbjct  184  LLDGL---FYS  191

328) fliP in NC_017445


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  116 bits (423),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 81/191 (43%), Positives = 125/191 (66%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKMYTDAYQPFSEDK-  120
            T+F +I +V+ + RNA+G   APPN  L G++L  T+FIM+PVF  M  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEAIDKGAQPLREFMLRQ-TREADLALFARLANTPPIAGPEAVPMRILL---PAY  174
               +M+ A     +PLR FM R+   + +  L+       P   ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVSSLAQSFYS  245
            L+ +L   FYS
Sbjct  184  LLDGL---FYS  191

329) fliP in NC_017390


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  116 bits (423),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 81/191 (43%), Positives = 125/191 (66%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKMYTDAYQPFSEDK-  120
            T+F +I +V+ + RNA+G   APPN  L G++L  T+FIM+PVF  M  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEAIDKGAQPLREFMLRQ-TREADLALFARLANTPPIAGPEAVPMRILL---PAY  174
               +M+ A     +PLR FM R+   + +  L+       P   ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVSSLAQSFYS  245
            L+ +L   FYS
Sbjct  184  LLDGL---FYS  191

330) fliP in NC_012214


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  116 bits (423),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 81/191 (43%), Positives = 125/191 (66%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKMYTDAYQPFSEDK-  120
            T+F +I +V+ + RNA+G   APPN  L G++L  T+FIM+PVF  M  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEAIDKGAQPLREFMLRQ-TREADLALFARLANTPPIAGPEAVPMRILL---PAY  174
               +M+ A     +PLR FM R+   + +  L+       P   ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVSSLAQSFYS  245
            L+ +L   FYS
Sbjct  184  LLDGL---FYS  191

331) fliP1 in NC_017644


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  116 bits (423),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 76/185 (42%), Positives = 130/185 (71%), Gaps = 16/185 (8%)

Query  63   MMTC--FTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTLLVMRPIWLNIYDHAV-VPF  119
            M+ C  F ++ +VL + R+A+G+QQ+PPN  L GIAL+ TL++M P+  ++ D+   +P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLP-  59

Query  120  ENDQITLTDALSTAAT----PLKRFMLAQTDKKAMAQIMTIG------GAKGNAADQDLS  169
              +++    A+ +A+     PL+ FM  + D    ++++            ++A+ +DL 
Sbjct  60   --EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  170  IVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVL  229
            +VVPA+VLSEL+++FQIGF+IYIPF+VIDLIV+++L+A+GM M++P+ +SLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  230  IDGWS  234
            +DGW+
Sbjct  178  VDGWT  182

332) MDS_1862 in NC_015410


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (421),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 78/188 (42%), Positives = 128/188 (69%), Gaps = 14/188 (7%)

Query  77   TSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTMFIMAPVF----DRINT--DALQP  130
            T+F +I +V+ I R+A+G+QQ+P+N  L G+AL  T+FIMAPVF    DR++   + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  131  YLNEEIIAQEALTRAEGPIRDFM---LAQTRESDL-ALFVRLSKRTDLAGVEDVPLTILV  186
            +   E  +++ +     P+R FM   L    +++L     R+  +          L ++V
Sbjct  65   FAAMESAGKHVV----EPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  187  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSPLIISLPFKIMLFVLVDG  246
            PAFV SEL+++FQIGF+I+IPF++ID++V++IL+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  247  WALIMGTL  254
            W+ +++ L
Sbjct  181  WTRLLDGL  188

333) COB47_1938 in NC_014392


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (421),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 128/189 (68%), Gaps = 16/189 (8%)

Query  71   TSFTRILIVLGFVRNALGTQQMPPNQILIGLALFLTFFVMAPV----TDKIYTQAYQPYI  126
            T+F +I +VL + RNA+G QQ PPN  L G+AL  T+F+MAPV     D++  +     +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV--KKLPEHL  62

Query  127  KGQITSQEALKRAEQPLKEFMLKNTRKKDLDLFVKLGNINPNTNVKDLPIR-------VV  179
                + + A K+  +PL+ FM   TR+ D D+   L +       K+++ +       +V
Sbjct  63   DTFAAMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  180  VPAFIISELKSAFEMGFLIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVD  239
            VPAF++SEL+++F++GFLIY+PF++ID++V++IL+++GM M++P+ ISLP+KILLF+LVD
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  240  GWNLVVESL  248
            GW  ++++L
Sbjct  180  GWTRLLDGL  188

334) Bmul_3754 in NC_010086


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (418),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 89/196 (46%), Positives = 137/196 (70%), Gaps = 7/196 (3%)

Query  25   LMVTSYTKLVVVLGLLRSALGVQQVPPNLVLNGIALILSLFIMAPV--GMSIRDALQARH  82
            ++ T++ K+ +VL + R+A+GVQQ PPN+ L GIAL  +LFIMAPV   M+ R    + H
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  83   FDASGQLSTADVGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDL  142
            +D+ + + +A     +   + P++ F+  +     +  ++  +  +WPK+ AD    DDL
Sbjct  62   LDTFAAMESA-----GKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDL  116

Query  143  LVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFV  202
            L++VP+F L+EL  +FQIGF+IYI FIV+DL+V+NILLALGMQM++P TIS+P+K+LLFV
Sbjct  117  LLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFV  176

Query  203  ALDGWSLLVHGLVLSY  218
             +DGW+ L++GL  SY
Sbjct  177  LVDGWTRLLDGLFYSY  192

335) yscR in NC_010805


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (418),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 89/196 (46%), Positives = 137/196 (70%), Gaps = 7/196 (3%)

Query  25   LMVTSYTKLVVVLGLLRSALGVQQVPPNLVLNGIALILSLFIMAPV--GMSIRDALQARH  82
            ++ T++ K+ +VL + R+A+GVQQ PPN+ L GIAL  +LFIMAPV   M+ R    + H
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  83   FDASGQLSTADVGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDL  142
            +D+ + + +A     +   + P++ F+  +     +  ++  +  +WPK+ AD    DDL
Sbjct  62   LDTFAAMESA-----GKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDL  116

Query  143  LVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFV  202
            L++VP+F L+EL  +FQIGF+IYI FIV+DL+V+NILLALGMQM++P TIS+P+K+LLFV
Sbjct  117  LLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFV  176

Query  203  ALDGWSLLVHGLVLSY  218
             +DGW+ L++GL  SY
Sbjct  177  LVDGWTRLLDGLFYSY  192

336) fliP in NC_008150


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (418),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 84/190 (45%), Positives = 125/190 (66%), Gaps = 9/190 (4%)

Query  63   TSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAY-LPFSQDK  121
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  122  -ISMDVALDKGSQPLREFMLRQ-TRESDLALYARLANLPPLEGPEMVPMRILL---PAYV  176
              +M+ A     +PLR FM R+   + +  L      + P E ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  177  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLL  236
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P +ISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  237  LGSLAQSFYS  246
            L++L   FYS
Sbjct  185  LDGL---FYS  191

337) fliP in NC_005810


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (418),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 84/190 (45%), Positives = 125/190 (66%), Gaps = 9/190 (4%)

Query  63   TSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAY-LPFSQDK  121
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  122  -ISMDVALDKGSQPLREFMLRQ-TRESDLALYARLANLPPLEGPEMVPMRILL---PAYV  176
              +M+ A     +PLR FM R+   + +  L      + P E ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  177  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLL  236
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P +ISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  237  LGSLAQSFYS  246
            L++L   FYS
Sbjct  185  LDGL---FYS  191

338) fliP in NC_004088


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (418),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 84/190 (45%), Positives = 125/190 (66%), Gaps = 9/190 (4%)

Query  63   TSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAY-LPFSQDK  121
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  122  -ISMDVALDKGSQPLREFMLRQ-TRESDLALYARLANLPPLEGPEMVPMRILL---PAYV  176
              +M+ A     +PLR FM R+   + +  L      + P E ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  177  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLL  236
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P +ISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  237  LGSLAQSFYS  246
            L++L   FYS
Sbjct  185  LDGL---FYS  191

339) fliP in NC_008149


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (418),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 84/190 (45%), Positives = 125/190 (66%), Gaps = 9/190 (4%)

Query  63   TSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAY-LPFSQDK  121
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  122  -ISMDVALDKGSQPLREFMLRQ-TRESDLALYARLANLPPLEGPEMVPMRILL---PAYV  176
              +M+ A     +PLR FM R+   + +  L      + P E ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  177  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLL  236
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P +ISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  237  LGSLAQSFYS  246
            L++L   FYS
Sbjct  185  LDGL---FYS  191

340) fliP in NC_006155


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (418),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 84/190 (45%), Positives = 125/190 (66%), Gaps = 9/190 (4%)

Query  63   TSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAY-LPFSQDK  121
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  122  -ISMDVALDKGSQPLREFMLRQ-TRESDLALYARLANLPPLEGPEMVPMRILL---PAYV  176
              +M+ A     +PLR FM R+   + +  L      + P E ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  177  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLL  236
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P +ISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  237  LGSLAQSFYS  246
            L++L   FYS
Sbjct  185  LDGL---FYS  191

341) fliP in NC_010645


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (420),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 81/191 (43%), Positives = 131/191 (69%), Gaps = 13/191 (6%)

Query  72   TGFTRIIIVLGLLRSAMGTAMSPPNHVLVGIALFLTFYTMSPVFDKIYTEAYQPLSTGSI  131
            T+F +I +VL + R+A+G   +PPN  L GIAL  T++ M+PVF  +  +  + L+    
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  132  PFETALERAG----APLHTFMLHQ-TRENDLALFANLANI-PK--IEDPSKVPMRILIPA  183
             F +A+E AG     PL+TFM ++   + +  L+ N   + PK   + +S+  + +++PA
Sbjct  64   TF-AAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  184  FITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVSLPFKLMLFVLADGWN  243
            F+ SEL+++FQIGF I+IPF++IDL+V+++L+ALGM MV+P+T+SLP+K++LFVL DGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  244  LLLGSLAKSFY  254
             LL++L   FY
Sbjct  183  RLLDGL---FY  190

342) Dd703_1550 in NC_012880


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 82/196 (42%), Positives = 129/196 (66%), Gaps = 21/196 (10%)

Query  71   TSFTRIIIVLGLLRSALGTPTAPPNQILIGLSLFLTFFIMSPVLT------KVYQDAYQP  124
            T+F +I +VL + R+A+G   APPN  L G++L  T+FIM+PV++      K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  125  FSENKINMETAIERGSQPLRQFMLRQ-TRETDLALFARLA-----EISALSGPEAVPMRV  178
            F+     ME+A  +  +PLR FM R+   + +  L+         E++  ++ + + +  
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL--  118

Query  179  LVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLV  238
            +VPAFV SEL+++FQIGF I+IPF++IDL+V+++L+ALGM MV+P T+SLP+K++LFVLV
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  239  DGWQLLLSSLVQSFYS  254
            DGW  LL +L   FYS
Sbjct  179  DGWTRLLDGL---FYS  191

343) fliP in NC_013971


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (418),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 123/194 (64%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFD------KIYTDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G++L  T+FIM+PVF       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEDKISMQEAIDKGAQPLREFMLRQ-TREADLALFARLANTPPIAGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P   ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVSSLAQSFYS  245
            W  L+ +L   FYS
Sbjct  181  WTRLLDGL---FYS  191

344) fliP1 in NC_013961


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (418),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 123/194 (64%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFD------KIYTDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G++L  T+FIM+PVF       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEDKISMQEAIDKGAQPLREFMLRQ-TREADLALFARLANTPPIAGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P   ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVSSLAQSFYS  245
            W  L+ +L   FYS
Sbjct  181  WTRLLDGL---FYS  191

345) fliP in NC_010694


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 124/194 (64%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFD------KIYTDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G++L  T+FIM+PVF       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEDKISMQEAIDKGAQPLREFMLRQ-TREADLALFARLANTAPIAGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P   ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

346) fliP in NC_010468


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (420),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 74/182 (41%), Positives = 129/182 (71%), Gaps = 10/182 (5%)

Query  63   MMTC--FTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAV-VPF  119
            M+ C  F ++ +VL + R+A+G+QQ+PPN  L GIAL+ T+++M P+  ++ D+   +P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  120  ENDRITLTDALST-AATPLKRFMLAQTDKKAMAQIMTIG------GAKGNAADQDLSIVV  172
            + D ++  ++ +     PL+ FM  + D    ++++            ++A+ +DL +VV
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  173  PAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDG  232
            PA+VLSEL+++FQIGF+IYIPF+VIDLIV+++L+A+GM M++P+ +SLP+K++LFVL+DG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  233  WS  234
            W+
Sbjct  181  WT  182

347) fliP2 in NC_017660


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 75/185 (41%), Positives = 129/185 (70%), Gaps = 16/185 (8%)

Query  63   MMTC--FTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAV-VPF  119
            M+ C  F ++ +VL + R+A+G+QQ+PPN  L GIAL+ T+++M P+  ++ D+   +P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLP-  59

Query  120  ENDQITLTDALSTAAT----PLKRFMLAQTDKKAMAQIMTIG------GAKGHAADQDLS  169
              +++    A+ +A+     PL+ FM  + D    ++++            + A+ +DL 
Sbjct  60   --EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  170  IVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVL  229
            +VVPA+VLSEL+++FQIGF+IYIPF+VIDLIV+++L+A+GM M++P+ +SLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  230  IDGWS  234
            +DGW+
Sbjct  178  VDGWT  182

348) EKO11_3667 in NC_016902


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 75/185 (41%), Positives = 129/185 (70%), Gaps = 16/185 (8%)

Query  63   MMTC--FTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAV-VPF  119
            M+ C  F ++ +VL + R+A+G+QQ+PPN  L GIAL+ T+++M P+  ++ D+   +P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLP-  59

Query  120  ENDQITLTDALSTAAT----PLKRFMLAQTDKKAMAQIMTIG------GAKGHAADQDLS  169
              +++    A+ +A+     PL+ FM  + D    ++++            + A+ +DL 
Sbjct  60   --EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  170  IVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVL  229
            +VVPA+VLSEL+++FQIGF+IYIPF+VIDLIV+++L+A+GM M++P+ +SLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  230  IDGWS  234
            +DGW+
Sbjct  178  VDGWT  182

349) fliP in NC_022364


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 75/185 (41%), Positives = 129/185 (70%), Gaps = 16/185 (8%)

Query  63   MMTC--FTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAV-VPF  119
            M+ C  F ++ +VL + R+A+G+QQ+PPN  L GIAL+ T+++M P+  ++ D+   +P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLP-  59

Query  120  ENDQITLTDALSTAAT----PLKRFMLAQTDKKAMAQIMTIG------GAKGHAADQDLS  169
              +++    A+ +A+     PL+ FM  + D    ++++            + A+ +DL 
Sbjct  60   --EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  170  IVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVL  229
            +VVPA+VLSEL+++FQIGF+IYIPF+VIDLIV+++L+A+GM M++P+ +SLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  230  IDGWS  234
            +DGW+
Sbjct  178  VDGWT  182

350) lfiP in NC_013364


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 75/185 (41%), Positives = 129/185 (70%), Gaps = 16/185 (8%)

Query  63   MMTC--FTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAV-VPF  119
            M+ C  F ++ +VL + R+A+G+QQ+PPN  L GIAL+ T+++M P+  ++ D+   +P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLP-  59

Query  120  ENDQITLTDALSTAAT----PLKRFMLAQTDKKAMAQIMTIG------GAKGHAADQDLS  169
              +++    A+ +A+     PL+ FM  + D    ++++            + A+ +DL 
Sbjct  60   --EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  170  IVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVL  229
            +VVPA+VLSEL+++FQIGF+IYIPF+VIDLIV+++L+A+GM M++P+ +SLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  230  IDGWS  234
            +DGW+
Sbjct  178  VDGWT  182

351) fliP in NC_013361


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 75/185 (41%), Positives = 129/185 (70%), Gaps = 16/185 (8%)

Query  63   MMTC--FTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAV-VPF  119
            M+ C  F ++ +VL + R+A+G+QQ+PPN  L GIAL+ T+++M P+  ++ D+   +P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLP-  59

Query  120  ENDQITLTDALSTAAT----PLKRFMLAQTDKKAMAQIMTIG------GAKGHAADQDLS  169
              +++    A+ +A+     PL+ FM  + D    ++++            + A+ +DL 
Sbjct  60   --EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  170  IVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVL  229
            +VVPA+VLSEL+++FQIGF+IYIPF+VIDLIV+++L+A+GM M++P+ +SLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  230  IDGWS  234
            +DGW+
Sbjct  178  VDGWT  182

352) lfiP in NC_017663


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (420),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 75/185 (41%), Positives = 130/185 (71%), Gaps = 16/185 (8%)

Query  63   MMTC--FARFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAV-VPF  119
            M+ C  F ++ +VL + R+A+G+QQ+PPN  L GIAL+ T+++M P+  ++ D+   +P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLP-  59

Query  120  ENDQITLTDALSTAAT----PLKRFMLAQTDKKAMAQIMTIG------GAKGNAADQDLS  169
              +++    A+ +A+     PL+ FM  + D    ++++            ++A+ +DL 
Sbjct  60   --EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  170  IVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVL  229
            +VVPA+VLSEL+++FQIGF+IYIPF+VIDLIV+++L+A+GM M++P+ +SLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  230  IDGWS  234
            +DGW+
Sbjct  178  VDGWT  182

353) lfiP in NC_017635


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 75/185 (41%), Positives = 129/185 (70%), Gaps = 16/185 (8%)

Query  63   MMTC--FTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAV-VPF  119
            M+ C  F ++ +VL + R+A+G+QQ+PPN  L GIAL+ T+++M P+  ++ D+   +P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLP-  59

Query  120  ENDQITLTDALSTAAT----PLKRFMLAQTDKKAMAQIMTIG------GAKGHAADQDLS  169
              +++    A+ +A+     PL+ FM  + D    ++++            + A+ +DL 
Sbjct  60   --EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  170  IVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVL  229
            +VVPA+VLSEL+++FQIGF+IYIPF+VIDLIV+++L+A+GM M++P+ +SLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  230  IDGWS  234
            +DGW+
Sbjct  178  VDGWT  182

354) fliP2 in NC_017664


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 75/185 (41%), Positives = 129/185 (70%), Gaps = 16/185 (8%)

Query  63   MMTC--FTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAV-VPF  119
            M+ C  F ++ +VL + R+A+G+QQ+PPN  L GIAL+ T+++M P+  ++ D+   +P 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLP-  59

Query  120  ENDQITLTDALSTAAT----PLKRFMLAQTDKKAMAQIMTIG------GAKGHAADQDLS  169
              +++    A+ +A+     PL+ FM  + D    ++++            + A+ +DL 
Sbjct  60   --EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  170  IVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVL  229
            +VVPA+VLSEL+++FQIGF+IYIPF+VIDLIV+++L+A+GM M++P+ +SLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  230  IDGWS  234
            +DGW+
Sbjct  178  VDGWT  182

355) MYA_4948 in NC_017921


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  114 bits (416),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 89/196 (46%), Positives = 138/196 (71%), Gaps = 7/196 (3%)

Query  25   LMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPV--GMSIRDALQARH  82
            ++ T++ K+ +VL + R+A+G+QQ PPN+ L GIAL  +LFIMAPV   M+ R    + H
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  83   FDAAGQLSTADIGVLADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDL  142
            +D+ + + +A+  V+      P++ F+  +     +  ++  +  +WPK+ AD    DDL
Sbjct  62   LDTFAAMESAGKHVVE-----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDL  116

Query  143  LVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFV  202
            L++VP+F L+EL  +FQIGF+IYI FIV+DL+V+NILLALGMQM++P TIS+P+K+LLFV
Sbjct  117  LLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFV  176

Query  203  ALDGWSLLVHGLVLSY  218
             +DGW+ L++GL  SY
Sbjct  177  LVDGWTRLLDGLFYSY  192

356) Bcep1808_5328 in NC_009255


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  114 bits (416),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 89/196 (46%), Positives = 138/196 (71%), Gaps = 7/196 (3%)

Query  25   LMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPV--GMSIRDALQARH  82
            ++ T++ K+ +VL + R+A+G+QQ PPN+ L GIAL  +LFIMAPV   M+ R    + H
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  83   FDAAGQLSTADIGVLADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDL  142
            +D+ + + +A+  V+      P++ F+  +     +  ++  +  +WPK+ AD    DDL
Sbjct  62   LDTFAAMESAGKHVVE-----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDL  116

Query  143  LVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFV  202
            L++VP+F L+EL  +FQIGF+IYI FIV+DL+V+NILLALGMQM++P TIS+P+K+LLFV
Sbjct  117  LLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFV  176

Query  203  ALDGWSLLVHGLVLSY  218
             +DGW+ L++GL  SY
Sbjct  177  LVDGWTRLLDGLFYSY  192

357) Bamb_4215 in NC_008391


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  114 bits (416),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 88/196 (45%), Positives = 138/196 (71%), Gaps = 7/196 (3%)

Query  25   LMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPV--GMSIRDALQSRH  82
            ++ T++ K+ +VL + R+A+G+QQ PPN+ L GIAL  +LFIMAPV   M+ R    + H
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  83   FDASGQLSTSDIGVLADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDL  142
            +D+ + + +++  V+      P++ F+  +     +  ++  +  +WPK+ AD    DDL
Sbjct  62   LDTFAAMESAGKHVVE-----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDL  116

Query  143  LVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFV  202
            L++VP+F L+EL  +FQIGF+IYI FIV+DL+V+NILLALGMQM++P TIS+P+K+LLFV
Sbjct  117  LLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFV  176

Query  203  ALDGWSLLVHGLVLSY  218
             +DGW+ L++GL  SY
Sbjct  177  LVDGWTRLLDGLFYSY  192

358) BamMC406_4737 in NC_010552


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  114 bits (416),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 88/196 (45%), Positives = 138/196 (71%), Gaps = 7/196 (3%)

Query  25   LMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPV--GMSIRDALQSRH  82
            ++ T++ K+ +VL + R+A+G+QQ PPN+ L GIAL  +LFIMAPV   M+ R    + H
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  83   FDASGQLSTSDIGVLADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDL  142
            +D+ + + +++  V+      P++ F+  +     +  ++  +  +WPK+ AD    DDL
Sbjct  62   LDTFAAMESAGKHVVE-----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDL  116

Query  143  LVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFV  202
            L++VP+F L+EL  +FQIGF+IYI FIV+DL+V+NILLALGMQM++P TIS+P+K+LLFV
Sbjct  117  LLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFV  176

Query  203  ALDGWSLLVHGLVLSY  218
             +DGW+ L++GL  SY
Sbjct  177  LVDGWTRLLDGLFYSY  192

359) Bcen_3526 in NC_008061


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  114 bits (416),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 87/196 (45%), Positives = 137/196 (70%), Gaps = 7/196 (3%)

Query  25   LMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPV--GMSIRDALQARH  82
            ++ T++ K+ +VL + R+A+G+QQ PPN+ L GIAL  +LFIMAPV   M+ R    + H
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  83   FDASGQLSTSDIGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDL  142
            +D+ + + ++     +   + P++ F+  +     +  ++  +  +WPK+ AD    DDL
Sbjct  62   LDTFAAMESA-----GKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDL  116

Query  143  LVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFV  202
            L++VP+F L+EL  +FQIGF+IYI FIV+DL+V+NILLALGMQM++P TIS+P+K+LLFV
Sbjct  117  LLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFV  176

Query  203  ALDGWSLLVHGLVLSY  218
             +DGW+ L++GL  SY
Sbjct  177  LVDGWTRLLDGLFYSY  192

360) Bcen2424_4840 in NC_008543


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  114 bits (416),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 87/196 (45%), Positives = 137/196 (70%), Gaps = 7/196 (3%)

Query  25   LMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPV--GMSIRDALQARH  82
            ++ T++ K+ +VL + R+A+G+QQ PPN+ L GIAL  +LFIMAPV   M+ R    + H
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  83   FDASGQLSTSDIGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDL  142
            +D+ + + ++     +   + P++ F+  +     +  ++  +  +WPK+ AD    DDL
Sbjct  62   LDTFAAMESA-----GKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDL  116

Query  143  LVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFV  202
            L++VP+F L+EL  +FQIGF+IYI FIV+DL+V+NILLALGMQM++P TIS+P+K+LLFV
Sbjct  117  LLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFV  176

Query  203  ALDGWSLLVHGLVLSY  218
             +DGW+ L++GL  SY
Sbjct  177  LVDGWTRLLDGLFYSY  192

361) bcscR in NC_011001


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  114 bits (416),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 87/196 (45%), Positives = 137/196 (70%), Gaps = 7/196 (3%)

Query  25   LMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPV--GMSIRDALQARH  82
            ++ T++ K+ +VL + R+A+G+QQ PPN+ L GIAL  +LFIMAPV   M+ R    + H
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  83   FDASGQLSTSDIGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDL  142
            +D+ + + ++     +   + P++ F+  +     +  ++  +  +WPK+ AD    DDL
Sbjct  62   LDTFAAMESA-----GKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDL  116

Query  143  LVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFV  202
            L++VP+F L+EL  +FQIGF+IYI FIV+DL+V+NILLALGMQM++P TIS+P+K+LLFV
Sbjct  117  LLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFV  176

Query  203  ALDGWSLLVHGLVLSY  218
             +DGW+ L++GL  SY
Sbjct  177  LVDGWTRLLDGLFYSY  192

362) Bcenmc03_5444 in NC_010515


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  114 bits (416),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 87/196 (45%), Positives = 137/196 (70%), Gaps = 7/196 (3%)

Query  25   LMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPV--GMSIRDALQARH  82
            ++ T++ K+ +VL + R+A+G+QQ PPN+ L GIAL  +LFIMAPV   M+ R    + H
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  83   FDASGQLSTSDIGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDL  142
            +D+ + + ++     +   + P++ F+  +     +  ++  +  +WPK+ AD    DDL
Sbjct  62   LDTFAAMESA-----GKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDL  116

Query  143  LVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFV  202
            L++VP+F L+EL  +FQIGF+IYI FIV+DL+V+NILLALGMQM++P TIS+P+K+LLFV
Sbjct  117  LLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFV  176

Query  203  ALDGWSLLVHGLVLSY  218
             +DGW+ L++GL  SY
Sbjct  177  LVDGWTRLLDGLFYSY  192

363) fliP in NC_014306


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  114 bits (416),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 83/190 (44%), Positives = 125/190 (66%), Gaps = 9/190 (4%)

Query  61   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMGPVFDKIYQDAY-LPFSQDK  119
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  120  -ISMQDAIDKGAQPLREFMLRQ-TREADLALFARLSNSPPLQGPEAVPMRILL---PAYV  174
              +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  175  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWSLL  234
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW+ L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  235  VSSLAQSFYS  244
            + +L   FYS
Sbjct  185  LDGL---FYS  191

364) fliP in NC_013892


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  114 bits (417),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 83/189 (44%), Positives = 128/189 (68%), Gaps = 9/189 (4%)

Query  86   TSFTRIIIVLGLLRNALGTPSAPPNQIMIGLALFMTFFIMSPVFDKVYQDAY-LPFSEDK  144
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  145  -ISLEAALDKGAQPLRQFMLRQ-TRQTDLALFA---RLADQDAFETADSVPIRVLVPAFI  199
              ++E+A     +PLR FM R+   + +  L+    R+  ++  + A    + ++VPAF+
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  200  TSELKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  259
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  260  LGSLAQSFY  268
            L++L   FY
Sbjct  185  LDGL---FY  190

365) Hprae_0560 in NC_017455


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  114 bits (417),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 81/195 (42%), Positives = 131/195 (68%), Gaps = 13/195 (6%)

Query  68   IILFTSFTRIIIVFSILKRALALNNMPPNQVLIGIAIFLTIFIMAPVWQGVNQ--DALQP  125
            +I+ T+F +I +V+ I + A+++++ PPN  L GIA+  T+FIMAPV   + +    L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  126  YLAQDISLEQAYENTITPVREFMFNQVD-ERSLALFTNIA-----EIERPESRDDLPTYI  179
             L    ++E A  + + P+R FM  ++D +    L+ N       E+    SRDDL   +
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDL--LL  118

Query  180  LIPAFLINEIKIAFQIGFLIYIPFLMIDMIVASILMSMGMMMLPPVIISLPFKILLFVLA  239
            ++PAF+++E++ +FQIGFLIYIPF++ID+IV++IL+++GM M++P+ ISLP+KILLFVL 
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  240  DGWHILIGSLVKTFY  254
            DGW  L+++L   FY
Sbjct  179  DGWTRLLDGL---FY  190

366) PT7_0779 in NC_015458


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  114 bits (417),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 80/192 (42%), Positives = 134/192 (70%), Gaps = 15/192 (7%)

Query  74   TGFTRIIIVLGLLRNAMGTGASPPNSILIGLALFLTFFAMSPVFDQIYADAYQPLSNGVI  133
            T+F +I +VL + RNA+G   +PPN  L G+AL  T+F M+PVF ++ +D  + L++ + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  134  AF---EEALERGIKPLHSFMLHQ-TREADLTMFANMA-----NVAELQTAEEVPLRVLVP  184
            +F   E A  + + PL++FM ++   + +  ++ N       ++A+  + +++ L  +VP
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL--VVP  121

Query  185  AFMASELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTISLPFKLMLFVLADGW  244
            AF+ SEL+++FQIGF I+IPF++IDL+V+++L+ALGM MV+P+TISLP+K++LFVL DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  245  HLLLGSLARSFY  256
              LL++L   FY
Sbjct  182  TRLLDGL---FY  190

367) fliP in NC_012962


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  114 bits (415),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 86/190 (46%), Positives = 126/190 (67%), Gaps = 9/190 (4%)

Query  68   TSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFMTFFIMSPVFDKVYQDAY-LPFSEDK  126
            T+F +I +VL + RNA+G   APPN  L G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  127  -ISLETALENGAKPLRQFMLRQ-TRENDLALFARLADQPPFETADSVPMRVLM---PAFI  181
              ++E+A  +   PLR FM R+   + +  L+       P E AD  +   L+   PAF+
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  182  TSELKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  241
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  242  LGSLAQSFYG  251
            L++L   FY+
Sbjct  185  LDGL---FYS  191

368) fliP in NC_005126


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  114 bits (415),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 85/191 (45%), Positives = 127/191 (67%), Gaps = 11/191 (5%)

Query  61   TSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFMTFFIMSPVFDKVYQDAYLPFSEDK-  119
            T+F +I +VL + RNA+G   APPN  L G+AL  T+FIM+PVF  +  D    ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  120  --ISLETALENGAKPLRQFMLRQ-TRENDLALFARLADQPPFETADSVPMRVLM---PAF  173
               ++E+A  +   PLR FM R+   + +  L+       P E AD  +   L+   PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  174  ITSELKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQL  233
            + SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  234  LLGSLAQSFYG  244
            LL++L   FY+
Sbjct  184  LLDGL---FYS  191

369) fliP in NC_011961


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  114 bits (414),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 84/190 (45%), Positives = 126/190 (67%), Gaps = 10/190 (5%)

Query  87   TSFTRIVIVLSFVRSAIGVPQLPPNQVLIGLALFLTVFVMAPTWQAVNR--DALQPYLRG  144
            T+F +I +VL + R+AIGV Q PPN  L G+AL  T+F+MAP    +      L   L  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  145  EINQRTALERGLQPLRTFMFRQTRERDIALFMSLGNLPR--PRTPEDVPTW----VLVPA  198
                 +A  + ++PLRTFM R+  + DI   + L N  R  P+   D +++    ++VPA
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNL-DPDIQTHL-LENTQRMWPKEMADKASRDDLLLVVPA  122

Query  199  FILSELKTAFTMGFVLFIPFLVIDLIVSSTLMAMGMIMVPPVVISLPFKLLLFVMVDGWD  258
            F+LSEL+++F +GF+++IPF+VIDLIVS+ L+A+GM MV+P+ ISLP+K+LLFV+VDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  259  LLVRSLVVSF  268
             L+ +L  S+
Sbjct  183  RLLDGLFYSY  192

370) fliP in NC_014532


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 82/193 (43%), Positives = 130/193 (68%), Gaps = 17/193 (8%)

Query  90   TSFTRIIIVLSLLRTAMGTQATPPNQVLLGLALFLTFFIMAPVFGEVHAQAWVPLSNGDI  149
            T+F +I +VL + R A+G Q +PPN  L G+AL  T+FIMAPVF+E+  +    L++   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV-KKLPEHLD  63

Query  150  NFPEFL---RQAQGPLREFMMAQTREPD-----LALFARL--ADIGELQGPADVPMRILV  199
             F+      ++   PLR FM ++  +PD     L    R+   ++++  +  D  + ++V
Sbjct  64   TFAAMESAGKHVVEPLRTFM-TRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVV  120

Query  200  PSFVTSELKTAFQIGFTIFIPFLIIDLVVASTLMSLGMMMVPPITISLPFKLMLFVLVDG  259
            P+FV SEL+++FQIGF I+IPF++IDL+V++ L++LGM MV+P+TISLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  260  WQLLIGSLAESFY  272
            W  L+++L   FY
Sbjct  181  WTRLLDGL---FY  190

371) D781_2730 in NC_020064


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  113 bits (410),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 83/190 (44%), Positives = 125/190 (66%), Gaps = 9/190 (4%)

Query  79   TSFTRIIIVLGLLRNALGTPSAPPNQVMLGLTLFLTFFIMSPVFDKVYQDAY-LPFSQDK  137
            T+F +I +VL + RNA+G   APPN  + G++L  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  138  IA-LDVAMEKGAQPLREFMLRQ-TRETDLALYARLAHQPPLAGPEAVPMRILL---PAYV  192
            +A ++ A     +PLR FM R+   + +  L     +  P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  193  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  252
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  253  LGSLAQSFYS  262
            L++L   FYS
Sbjct  185  LDGL---FYS  191

372) fliP in NC_013282


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  113 bits (412),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 129/191 (68%), Gaps = 11/191 (5%)

Query  40   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYSDAYQPFTENK-  98
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  + +D  + + E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  99   --ISMEVALDRGAQPLREFMLRQ-TREADLALFAKLANTQPIQGPEAVPMRILL---PAY  152
               +ME A  +  +PLR FM R+   + +  L+ +     P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  153  VTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASIALPFKLMLFVLVDGWQL  212
            V SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P +I+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  213  LVGSLAQSFYS  223
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

373) fliP in NC_014500


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  113 bits (413),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 81/195 (42%), Positives = 132/195 (68%), Gaps = 13/195 (6%)

Query  73   MMTC--FTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFS  130
            M+ C  F +I +VL + RNA+G   APPN  L G++L  T+F+M+PV++ + ++  + ++
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLP  59

Query  131  EDK---ISMEVAIEKGSQPLREFMLRQ-TREADLALFTRLAQIPSLQGPEAVPMRVL---  183
            E+     +ME A     +PLR FM R+   + +  L+    ++ + + ++  +   L   
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  184  VPAYVTSELKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVD  243
            VPA+V SEL+++FQIGF I+IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVD
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  244  GWQLLLGSLAQSFYT  258
            GW  LL++L   FY+
Sbjct  180  GWTRLLDGL---FYS  191

374) Mesop_2004 in NC_015675


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  113 bits (412),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 78/191 (41%), Positives = 135/191 (71%), Gaps = 11/191 (5%)

Query  56   LIMVTSFTRFVIAFSILRAGIGLQSTPANLILISLSLFMTFYVMAPTFDQAWNTGVKPLM  115
            +I+ T+F ++ + + I R +IG+Q +P+N+ L +++L  T+++MAP F +     VK L 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLP  59

Query  116  D--NQISQTEAFDK-ISDPFRTFMLHNV-RDKDFDLFADLAR----ERGQTVSRDTVDLR  167
            +  + ++  E+ +K + +P+RTFM +N+  D + +L+ +  R    E ++  SRD  DL 
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD--DLL  117

Query  168  ILVPAFMISEIRRGFEIGFLIVLPFLVIDLIVATITMAMGMMMLPPTVVSLPFKILFFVL  227
            ++VPAF++SE++ GF+IGFLI +PF+VIDLIV+ I +A+GM M++P  +SLP+KIL+FVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  228  IDGWNLLVGSL  238
            +DGW  L+++L
Sbjct  178  VDGWTRLLDGL  188

375) Dd1591_1566 in NC_012912


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  113 bits (413),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 132/195 (68%), Gaps = 13/195 (6%)

Query  73   MMTC--FTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFS  130
            M+ C  F +I +VL + RNA+G   APPN  L G++L  T+F+M+PV++ + ++  + ++
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLP  59

Query  131  EDK---ISMEVAIDKGSQPLREFMLRQ-TREADLALFTRLAQIPSLQGPEAVPMRVL---  183
            E+     +ME A     +PLR FM R+   + +  L+    ++ + + ++  +   L   
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  184  VPAYVTSELKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVD  243
            VPA+V SEL+++FQIGF I+IPF++IDL+V+++L+ALGM MV+P TI+LP+K++LFVLVD
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  244  GWQLLLGSLAQSFYT  258
            GW  LL++L   FY+
Sbjct  180  GWTRLLDGL---FYS  191

376) Desgi_2217 in NC_021184


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  113 bits (412),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 71/177 (41%), Positives = 121/177 (69%), Gaps = 6/177 (3%)

Query  71   TSFTRIIVVLSLLRSALGTQQTPPNQVIIGLALFLTVFIMTPVAGQINE--EAIQPYLDN  128
            T+F +I +VL + R+A+G QQ+PPN  + G+AL  T+FIM+PV +++ +    +   LD 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  129  QISQQQAWDKAYSPLRSFMLK----QTREKDLALFIKLSGTEKPENRQDVSAVVLIPAYV  184
              + + A      PLR+FM +    + +   L    ++   E +++      ++++PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  185  ISELKTAFQIGFMIYIPFLVIDMVVASTLMSMGMFMLPPVMISLPFKILLFVMVDGW  241
            +SEL+++FQIGF+IYIPF+VID++V++ L+++GM M++P+ ISLP+KILLFV+VDGW
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

377) Mesci_1948 in NC_014923


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  113 bits (412),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 78/191 (41%), Positives = 135/191 (71%), Gaps = 11/191 (5%)

Query  56   LIMVTSFTRFVIAFSILRAGIGLQSTPANLILISLSLFMTFYVMAPTFDQAWNTGVKPLM  115
            +I+ T+F ++ + + I R +IG+Q +P+N+ L +++L  T+++MAP F +     VK L 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLP  59

Query  116  D--NQITQTEAFDK-ISDPFRTFMLHNV-RDKDFDLFADLAR----ERGQTVSRDTVDLR  167
            +  + ++  E+ +K + +P+RTFM +N+  D + +L+ +  R    E ++  SRD  DL 
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD--DLL  117

Query  168  ILVPAFMISEIRRGFEIGFLIVLPFLVIDLIVATITMAMGMMMLPPTVVSLPFKILFFVL  227
            ++VPAF++SE++ GF+IGFLI +PF+VIDLIV+ I +A+GM M++P  +SLP+KIL+FVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  228  IDGWNLLVGSL  238
            +DGW  L+++L
Sbjct  178  VDGWTRLLDGL  188

378) Pat9b_2399 in NC_014837


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  113 bits (410),  Expect = 9e-27, Method: Compositional matrix adjust.
 Identities = 82/191 (43%), Positives = 126/191 (66%), Gaps = 11/191 (5%)

Query  61   TSFTRIIIVFGLLRNALGTPSAPPNQVLVGLALFLTFFIMAPTFDKIYSDAYLPFSQDK-  119
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIMAP F  + +D    ++++  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  120  --ISMDVAIDKGAQPLREFMLRQ-TREADLALFARLANTPPIEGPEAVPMRILL---PAY  173
               +M+ A     +PLR FM R+   + +  L+       P E ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  174  VTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQL  233
            V SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  234  LVGSLAQSFYS  244
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

379) ST548_p6298 in NC_020181


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  112 bits (408),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 82/190 (44%), Positives = 124/190 (66%), Gaps = 9/190 (4%)

Query  70   TSFTRIIIVLGLLRNALGTPSAPPNQVMLGLTLFLTFFIMSPVFDKVYQEAY-LPFSQDK  128
            T+F +I +VL + RNA+G   APPN  + G++L  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  129  -IGLDTALDKGAQPLREFMLRQ-TRESDLALYARLANQPPLAGPEAVPMRILL---PAYV  183
              ++++A     +PLR FM R+   + +  L        P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  184  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  243
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  244  LGSLAQSFYS  253
            L++L   FYS
Sbjct  185  LDGL---FYS  191

380) fliP in NC_015663


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  112 bits (408),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 83/190 (44%), Positives = 124/190 (66%), Gaps = 9/190 (4%)

Query  70   TSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAY-LPFSQDK  128
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  129  -IGLDTALDKGAQPLREFMLRQ-TRESDLALYARLANQPPLAGPEAVPMRILL---PAYV  183
              ++++A     +PLR FM R+   + +  L        P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  184  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  243
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  244  LGSLAQSFYS  253
            L++L   FYS
Sbjct  185  LDGL---FYS  191

381) fliP in NC_017933


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  112 bits (408),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 128/194 (66%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYSDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K  ++  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FTENKISMEVALDRGAQPLREFMLRQ-TREADLALFAKLANTQPIQGPEAVPMRILL---  171
            F+    +ME A  +  +PLR FM R+   + +  L+ +     P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P +I+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

382) CSSP291_05910 in NC_020260


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  112 bits (408),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 128/194 (66%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYSDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K  ++  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FTENKISMEVALDRGAQPLREFMLRQ-TREADLALFAKLANTQPIQGPEAVPMRILL---  171
            F+    +ME A  +  +PLR FM R+   + +  L+ +     P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P +I+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

383) Dd586_1528 in NC_013592


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  112 bits (409),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 81/195 (42%), Positives = 131/195 (68%), Gaps = 13/195 (6%)

Query  73   MMTC--FTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFS  130
            M+ C  F +I +VL + RNA+G   APPN  L G++L  T+F+M+PV++ + ++  + ++
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLP  59

Query  131  EDK---ISMEVAIDKGSKPLREFMLRQ-TREADLALFTRLAQIPSLQGPEAVPMRVL---  183
            E+     +ME A      PLR FM R+   + +  L+    ++ + + ++  +   L   
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  184  VPAYVTSELKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVD  243
            VPA+V SEL+++FQIGF I+IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVD
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  244  GWQLLLGSLAQSFYT  258
            GW  LL++L   FY+
Sbjct  180  GWTRLLDGL---FYS  191

384) fliP in NC_009436


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  112 bits (408),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 81/194 (42%), Positives = 126/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYADAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K  ++  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEDKISMQVALEKGAQPLREFMLRQ-TREADLALFARLANEGPIQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

385) H650_09085 in NC_021500


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  112 bits (408),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 79/192 (42%), Positives = 129/192 (68%), Gaps = 13/192 (6%)

Query  70   TGFTRIVIVLGLLRNALGTASTPPNQVLLGLALFLTFFVMSPVLNRVYDEAWVPLSQDKI  129
            T+F +I +VL + RNA+G   +PPN  L G+AL  T+F+M+PV++ +    +V    + +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM--GDRVKKLPEHL  62

Query  130  ----SMEVALQKGSQPLRAFMLKQ-TREGDLALFSRIAK---AEQFNTADDVPMSILVPA  181
                +ME A +   +PLR+FM ++   + +  L+    +    E  + A    + ++VPA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  182  FVTSELKTGFQIGFTMFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQ  241
            FV SEL++GFQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  242  LVIGSLAQSFFS  253
             ++++L   F+S
Sbjct  183  RLLDGL---FYS  191

386) fliP in NC_021741


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  112 bits (407),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 83/190 (44%), Positives = 124/190 (66%), Gaps = 9/190 (4%)

Query  75   TSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAY-LPFSQDK  133
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  134  -ISLDIALDKGSQPLREFMLRQ-TRETDLALYAKLANQPPLAGPEAVPMRILL---PAYV  188
              +++ A     +PLR FM R+   + +  L  +     P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  189  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  248
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  249  LGSLAQSFYS  258
            L++L   FYS
Sbjct  185  LDGL---FYS  191

387) fliP in NC_022000


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  112 bits (407),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 80/187 (43%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  73   TSFTRIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAPVFDKIYQDAYLPFSEDKI  132
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIMAPVF  +  D    ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  133  TFEQALDNGSQ---PLRQFMMQQ-TRETDLALFA---RL--ADAPAFETRDSVPMRILVP  183
            TF      G +   PLR FM ++   + +  L+    R+   + +   +RD   + ++VP
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVVP  121

Query  184  AYITSELKTAFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGW  243
            A++ SEL+++FQIGF+I+IPF++IDL+V+++L+ALGM MV+P T+SLP+K++LFVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  244  QLILGSL  250
              +L++L
Sbjct  182  TRLLDGL  188

388) fliP in NC_010554


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  112 bits (407),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 80/187 (43%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  73   TSFTRIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAPVFDKIYQDAYLPFSEDKI  132
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIMAPVF  +  D    ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  133  TFEQALDNGSQ---PLRQFMMQQ-TRETDLALFA---RL--ADAPAFETRDSVPMRILVP  183
            TF      G +   PLR FM ++   + +  L+    R+   + +   +RD   + ++VP
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVVP  121

Query  184  AYITSELKTAFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGW  243
            A++ SEL+++FQIGF+I+IPF++IDL+V+++L+ALGM MV+P T+SLP+K++LFVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  244  QLILGSL  250
              +L++L
Sbjct  182  TRLLDGL  188

389) Calow_1847 in NC_014657


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  112 bits (408),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 77/187 (42%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  71   TSFTRILIVLGFVRNALGTQQMPPNQILIGLALFLTFFVMAPV----TDKIYTQAYQPYI  126
            T+F +I +VL + RNA+G QQ PPN  L G+AL  T+F+MAPV     D++  +     +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV--KKLPEHL  62

Query  127  NGEITSQEALKRAEVPLKEFMLKN-TRKKDLDLFVKLGNVNP----NTNIRDLPLRVVVP  181
            +   + + A K+   PL+ FM +N     + +L+ +   + P    +   RD  L +VVP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD-DLLLVVP  121

Query  182  AFIISELKSAFEMGFLIYVPFLIIDMTVASILMSMGMLMIPPVMISLPFKILLFILVDGW  241
            AF++SEL+++F++GFLIY+PF++ID+ V++IL+++GM M++P+ ISLP+KILLF+LVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  242  NLVVESL  248
              ++++L
Sbjct  182  TRLLDGL  188

390) fliP in NC_002696


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  112 bits (407),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 78/189 (42%), Positives = 132/189 (70%), Gaps = 11/189 (5%)

Query  75   VIMTTSFVRIVVVLGLLRTAIGVQQSPPNPVLISLALFLTAIVMAPTFERSYDAGIKPLL  134
            +I+ T+F++I +VL + R AIGVQQ+PPN  L ++AL  T ++MAP F    D   K  L
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--L  58

Query  135  DQQMELPEAFEAAS----GPVKQFMLSQVDRDDLALFVRLSKIPQPRTAAETPLR----V  186
             ++++   A E+A+     P++ FM  ++D D  + ++  ++   P+  A+ + R    +
Sbjct  59   PEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  187  VTPAFMISELKRAFEIGFLLFIPFLVIDLVVASVLMSMGMMMLPPASISLPFKLIFFVLV  246
            V PAF++SEL+ +F+IGFL++IPF+VIDL+V+++L+++GM M++P +ISLP+K+++FVLV
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  247  DGW-RLVAG  254
            DGW RL+ G
Sbjct  179  DGWTRLLDG  187

391) fliP in NC_011916


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  112 bits (407),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 78/189 (42%), Positives = 132/189 (70%), Gaps = 11/189 (5%)

Query  75   VIMTTSFVRIVVVLGLLRTAIGVQQSPPNPVLISLALFLTAIVMAPTFERSYDAGIKPLL  134
            +I+ T+F++I +VL + R AIGVQQ+PPN  L ++AL  T ++MAP F    D   K  L
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--L  58

Query  135  DQQMELPEAFEAAS----GPVKQFMLSQVDRDDLALFVRLSKIPQPRTAAETPLR----V  186
             ++++   A E+A+     P++ FM  ++D D  + ++  ++   P+  A+ + R    +
Sbjct  59   PEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  187  VTPAFMISELKRAFEIGFLLFIPFLVIDLVVASVLMSMGMMMLPPASISLPFKLIFFVLV  246
            V PAF++SEL+ +F+IGFL++IPF+VIDL+V+++L+++GM M++P +ISLP+K+++FVLV
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  247  DGW-RLVAG  254
            DGW RL+ G
Sbjct  179  DGWTRLLDG  187

392) fliP in NC_009778


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (406),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 129/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYSDAYQPFNENK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  + +D  + + E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMEVALDRGAQPLREFMLRQ-TREADLALFAKLANTQPIQGPEAVPMRILL---PAY  174
               +ME A  +  +PLR FM R+   + +  L+ +     P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P +I+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

393) fliP in NC_021820


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (406),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LMGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

394) fliP in NC_016856


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (406),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LMGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

395) fliP in NC_017046


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (406),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LMGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

396) STMMW_19591 in NC_016854


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (406),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LMGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

397) fliP in NC_003197


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (406),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LMGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

398) fliP in NC_016810


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (406),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LMGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

399) fliP in NC_016857


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (406),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LMGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

400) fliP in NC_016860


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (406),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LMGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

401) fliP in NC_021151


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (406),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LMGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

402) fliP in NC_016863


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (406),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LMGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

403) fliP in NC_021814


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (406),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LMGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

404) fliP in NC_014121


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (406),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYTDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEDKISMQEALEKGAQPLREFMLRQ-TREADLALFA---RLSNTGELQGPEAVPMRILL  171
            F+    +M+ A     +PLR FM R+   + +  L+    R+      + +    + +++
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVSSLAQSFYS  245
            W  L+ +L   FYS
Sbjct  181  WTRLLDGL---FYS  191

405) fliP in NC_018079


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (406),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYTDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEDKISMQEALEKGAQPLREFMLRQ-TREADLALFA---RLSNTGELQGPEAVPMRILL  171
            F+    +M+ A     +PLR FM R+   + +  L+    R+      + +    + +++
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVSSLAQSFYS  245
            W  L+ +L   FYS
Sbjct  181  WTRLLDGL---FYS  191

406) fliP in NC_016514


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (406),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYTDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEDKISMQEALDKGAQPLREFMLRQ-TREADLALFA---RLSNTGELQGPEAVPMRILL  171
            F+    +M+ A     +PLR FM R+   + +  L+    R+      + +    + +++
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVSSLAQSFYS  245
            W  L+ +L   FYS
Sbjct  181  WTRLLDGL---FYS  191

407) Cabther_B0538 in NC_016025


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 90/199 (46%), Positives = 128/199 (65%), Gaps = 7/199 (3%)

Query  55   LIMMTSFVKISVVLSILRNALGTQQVPPNQVITGISLILTIFIMAPVAEKMLEEAGLSDA  114
            +I+ T+F+KI++VL I RNA+G QQ PPN  + GI+L  T+FIMAPV   M +       
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  115  TAPVFTEMRADTLFKALDKGKEPLRAFLERNAHEADRRLFLGLAQRLAQKNGKDPNAITV  174
                F+ M +           EPLR+F+ RN +   +  +L  +QR+  K+  D  +   
Sbjct  61   HLDTFAAMESAG-----KHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD-  114

Query  175  RDFRVVVPAFVTSQLTEAFQIGFLLFIPFLVIDMLVSNILQAMGMFMLSPTMISLPfkll  234
             D+ +VVPAFV S+L  +FQIGFL++IPF+VID++VSNIL A+GM M++P  ISLP+K+L
Sbjct  115  -DLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKIL  173

Query  235  lfvlvkGWVTLIQNLVLSY  253
            LFVLV GW  L++ L  SY
Sbjct  174  LFVLVDGWTRLLDGLFYSY  192

408) SerAS12_3042 in NC_015566


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 83/190 (44%), Positives = 125/190 (66%), Gaps = 9/190 (4%)

Query  58   TSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAY-LPFSQDK  116
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  117  IS-LDAALDKGSQPLREFMLRQ-TRETDLALYARLANQPPLAGPEAVPMRILL---PAYV  171
            ++ +++A     +PLR FM R+   + +  L        P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  172  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  231
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  232  LGSLAQSFYS  241
            L++L   FYS
Sbjct  185  LDGL---FYS  191

409) SerAS13_3044 in NC_017573


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 83/190 (44%), Positives = 125/190 (66%), Gaps = 9/190 (4%)

Query  58   TSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAY-LPFSQDK  116
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  117  IS-LDAALDKGSQPLREFMLRQ-TRETDLALYARLANQPPLAGPEAVPMRILL---PAYV  171
            ++ +++A     +PLR FM R+   + +  L        P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  172  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  231
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  232  LGSLAQSFYS  241
            L++L   FYS
Sbjct  185  LDGL---FYS  191

410) Ser39006_3174 in NC_022268


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 84/191 (44%), Positives = 126/191 (66%), Gaps = 11/191 (5%)

Query  77   TSFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFIMSPVLNRIYQDAYLPFSENK-  135
            T+F +I +VL + RNA+G   APPN  L G++L  T+FIM+PV++ +  D    ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  136  --INMEVAIDKGAKPLREFMLRQ-TRETDLALFTRLAEIPSLEGPESVPMRVL---VPAY  189
                ME A      PLR FM R+   + +  L+     + + E ++  +   L   VPA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  190  VTSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQL  249
            V SEL+++FQIGF I+IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  250  LLGSLAQSFYS  260
            LL++L   FYS
Sbjct  184  LLDGL---FYS  191

411) fliP in NC_021591


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 83/190 (44%), Positives = 125/190 (66%), Gaps = 9/190 (4%)

Query  58   TSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAY-LPFSQDK  116
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  117  IS-LDAALDKGSQPLREFMLRQ-TRETDLALYARLANQPPLAGPEAVPMRILL---PAYV  171
            ++ +++A     +PLR FM R+   + +  L        P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  172  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  231
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  232  LGSLAQSFYS  241
            L++L   FYS
Sbjct  185  LDGL---FYS  191

412) SerAS9_3041 in NC_015567


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 83/190 (44%), Positives = 125/190 (66%), Gaps = 9/190 (4%)

Query  58   TSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAY-LPFSQDK  116
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  117  IS-LDAALDKGSQPLREFMLRQ-TRETDLALYARLANQPPLAGPEAVPMRILL---PAYV  171
            ++ +++A     +PLR FM R+   + +  L        P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  172  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  231
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  232  LGSLAQSFYS  241
            L++L   FYS
Sbjct  185  LDGL---FYS  191

413) fliP in NC_021659


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 83/190 (44%), Positives = 125/190 (66%), Gaps = 9/190 (4%)

Query  58   TSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAY-LPFSQDK  116
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  117  IS-LDAALDKGSQPLREFMLRQ-TRETDLALYARLANQPPLAGPEAVPMRILL---PAYV  171
            ++ +++A     +PLR FM R+   + +  L        P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  172  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  231
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  232  LGSLAQSFYS  241
            L++L   FYS
Sbjct  185  LDGL---FYS  191

414) fliP in NC_014562


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 123/190 (65%), Gaps = 9/190 (4%)

Query  61   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMAPTFDKIYQDAY-LPFSQDK  119
            T+F +I +V+ + RNA+G   APPN  L G++L  T+FIMAP F  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  120  -ISMDVAIDKGAQPLREFMLRQ-TREADLALFARLANTAPIAGPEAVPMRILL---PAYV  174
              +M+ A     +PLR FM R+   + +  L+       P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  175  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASIALPFKLMLFVLVDGWQLL  234
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P +I+LP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  235  VGSLAQSFYS  244
            +++L   FYS
Sbjct  185  LDGL---FYS  191

415) MU9_1792 in NC_020418


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 74/180 (42%), Positives = 122/180 (68%), Gaps = 8/180 (4%)

Query  62   MTTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVFDKVYEDAYRPFSED  121
            + T+F +I +VL + RNA+G   APPN  L G+AL  T+F+M+PVF  +  D  + ++E+
Sbjct  3    ICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEH  61

Query  122  K---ISLETALDRGTAPLRTFMLGQ-TRENDLALFARIAKV---GEIQEAKDVPMRILIP  174
                 ++E+A  +   PLRTFM  +   + +  L+    ++      + A    + +++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  175  AFITSELKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGW  234
            AF+ SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P T+SLP+K++LFVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

416) fliP in NC_010067


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

417) fliP in NC_011149


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

418) fliP in NC_021844


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

419) SBOV20391 in NC_022241


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

420) fliP in NC_006905


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

421) fliP in NC_021818


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

422) fliP in NC_011205


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

423) fliP in NC_011294


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

424) fliP in NC_011274


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

425) fliP in NC_022221


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

426) fliP in NC_016831


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

427) fliP in NC_020307


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

428) fliP in NC_011080


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

429) SN31241_30780 in NC_021902


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

430) fliP in NC_010102


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

431) fliP in NC_012125


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

432) fliP in NC_021984


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

433) fliP in NC_011094


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

434) STY2187 in NC_003198


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

435) STBHUCCB_9660 in NC_016832


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

436) fliP in NC_021176


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

437) fliP in NC_004631


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

438) fliP in NC_004337


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (403),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  21   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  74
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  75   FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  130
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  131  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  190
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  191  WQLLVGSLAQSFYS  204
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

439) Entcl_1801 in NC_014618


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (405),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 78/194 (41%), Positives = 126/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRSALGTASAPPNQVLLGLALFLTFFIMSPVID------KIYTDAYQP  115
            T+F +I +V+ + R+A+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FNDNKITLEQAIDKGAQPLREFMLRQ-TREADLALFA---RLSHSEPIQGPEAVPMRILL  171
            F     ++E A     +PLR FM R+   + +  L+    R+   E  + +    + +++
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

440) fliP in NC_012857


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 76/186 (41%), Positives = 125/186 (68%), Gaps = 10/186 (5%)

Query  66   SSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDNK-  124
            ++F +I +VL + R+A+G Q +PPN  L G+AL  T+F+M+PV+  +  D    L ++  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  125  --ITVEQAMDTAATPLRQFMLKQTREPDLA--LFVKMGNMPAIASPEQTPMRAL---IPA  177
               ++E A      PLR FM ++  +PD+   L+ +   M +   +++++   L   +PA
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNL-DPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  178  FVTSELKSAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWH  237
            FV SEL+++FQIGF I+IPF+VID++V+ +L+++GM MV+P  +SLP+KI+LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  238  LLLGSL  243
             LL++L
Sbjct  183  RLLDGL  188

441) fliP in NC_010678


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 76/186 (41%), Positives = 125/186 (68%), Gaps = 10/186 (5%)

Query  66   SSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDNK-  124
            ++F +I +VL + R+A+G Q +PPN  L G+AL  T+F+M+PV+  +  D    L ++  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  125  --ITVEQAMDTAATPLRQFMLKQTREPDLA--LFVKMGNMPAIASPEQTPMRAL---IPA  177
               ++E A      PLR FM ++  +PD+   L+ +   M +   +++++   L   +PA
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNL-DPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  178  FVTSELKSAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWH  237
            FV SEL+++FQIGF I+IPF+VID++V+ +L+++GM MV+P  +SLP+KI+LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  238  LLLGSL  243
             LL++L
Sbjct  183  RLLDGL  188

442) fliP in NC_007963


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (402),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 83/196 (43%), Positives = 130/196 (67%), Gaps = 23/196 (11%)

Query  66   TCFTRIIIVLSLLRTAIGTQSTPPNQVLLGLALFMTFFIMSPVL----DRVHE--QAWVP  119
            T F +I +VL + R AIG Q +PPN  L G+AL  T+FIM+PV+    DRV    +    
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  120  FSEERISLEQALEQGSQPFREFMFGQTRETDLALFARMADADEMQGPEDVPMR-------  172
            F+    ++E A  +  +P+R FM   TR+ D  + +++ +  +   P +++ +       
Sbjct  65   FA----AMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  173  LLIPAFLTSELKTAFQIGFSIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVL  232
            L++PAF+ SEL+++FQIGF I+IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  233  VDGWQLLIGSLAESFY  248
            VDGW  L+++L   FY
Sbjct  178  VDGWTRLLDGL---FY  190

443) Rta_29680 in NC_015677


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (401),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 81/193 (42%), Positives = 136/193 (71%), Gaps = 3/193 (1%)

Query  27   MMVTSYTKIVVVLGLVRNALGVQQVPPNMMLNGIAIIISVYIVAPLFMDSFEALNK-PAV  85
            ++ T++ KI +VL + RNA+GVQQ PPNM L GIA+  +++I+AP+F +  + ++K P  
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  86   AEGGGARQVASVVEAAREPVRRFLDKHAHAREKAFFLKSVSAIWTPERAKTVRPDDLIIL  145
             +  +A + A+      EP+R F+ ++ ++  ++ +L +   +W  E A     DDL+++
Sbjct  62   LDTFAAMESAG--KHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  146  APAFTLSELTEAFKIGFLIYlafvvvdlvvanvllalglSQVTPTQIAIPFKLLLFVVMD  205
             PAF LSEL  +F+IGFLIY++F+V+DL+V+N+LLALG+  V+P  I++P+K+LLFV++D
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  206  GWSVLLHGLVMTY  218
            GW+ LL+GL  +Y
Sbjct  180  GWTRLLDGLFYSY  192

444) D782_1687 in NC_020063


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (402),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 127/194 (66%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYTDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEDKISLQEAMDKGSQPLREFMLRQ-TREADLALFARLANSAPIEGPEAVP---LRILL  171
            F+    +++ A     +PLR FM R+   + +  L+       P E ++  +   L +++
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

445) fliP in NC_017575


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (402),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 75/185 (41%), Positives = 121/185 (66%), Gaps = 8/185 (4%)

Query  66   SSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDSK-  124
            ++F +I +VL + R+A+G Q +PPN  L G+AL  T+F+M+PV+  +  D    L +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  125  --ISVEQALDTAATPLRQFMLKQ-TREPDLALFAKMGNLPPIASPDQVPMRAL---IPAF  178
               ++E A      PLR FM ++   + +  L+ +   + P   +D+ +   L   +PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  179  VTSELKTSFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHL  238
            V SEL+++FQIGF I+IPF+VID++V+ +L+++GM MV+P  +SLP+KI+LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  239  LLGSL  243
            LL++L
Sbjct  184  LLDGL  188

446) Tmar_0992 in NC_014831


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (402),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 130/192 (68%), Gaps = 14/192 (7%)

Query  42   TGFTRIVVALSFLRSALGTQQAPPNQVLVGLALFLTVFVMAPVWQQVYQDAWVPYRDGQI  101
            T+F +I + L + R+A+G QQAPPN  L G+AL  T+F+MAPV  ++  + +V     ++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM--GDRVKKLPEHL  62

Query  102  GQVEALQRAQ----QPVREFMFRYTRERDLALFLELSGR------GPVESRDQVPTYVLI  151
            +   A++ A     +P+R FM R       + +LE + R      +   SRD++   +++
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDL--LLVV  120

Query  152  PAFAISELKTAFQIGFILYVPFLVIDMVVASTLMSMGMLMVPPMLVSLPFKILLFVLVDG  211
            PAF +SEL+++FQIGF++Y+PF+VID++V++ L+++GM MV+PM +SLP+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  212  WNLVVRSLLASF  223
            W  ++ +L+ S+
Sbjct  181  WTRLLDGLFYSY  192

447) fliP in NC_020211


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (402),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 84/190 (45%), Positives = 124/190 (66%), Gaps = 9/190 (4%)

Query  70   TSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAY-LPFSQDK  128
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  129  IG-LEVALDKGAQPLREFMLRQ-TRETDLALYARLANQPPLAGPEAVPMRILL---PAYV  183
            ++ +E A     +PLR FM R+   + +  L        P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  184  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  243
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  244  LGSLAQSFYS  253
            L++L   FYS
Sbjct  185  LDGL---FYS  191

448) Entas_2744 in NC_015968


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (401),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 81/197 (42%), Positives = 128/197 (65%), Gaps = 23/197 (11%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYTDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEDKISMQDALEKGAQPLREFMLRQTREADLALFARLANTGELQGPEAVPMR-------  168
            F+    +M+ A     +PLR FM   TR+ D  + ++L +  +   P  ++ +       
Sbjct  65   FA----AMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  169  ILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVL  228
            +++PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+KI+LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  229  VDGWQLLVSSLAQSFYS  245
            VDGW  L+ +L   FYS
Sbjct  178  VDGWTRLLDGL---FYS  191

449) fliP in NC_015761


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (401),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALEKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

450) A464_2127 in NC_021870


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (401),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALEKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

451) fliP in NC_021810


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (401),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

452) SU5_02582 in NC_017623


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (401),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

453) fliP in NC_021812


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (401),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

454) fliP in NC_011083


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (401),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLRAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PLR+FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

455) fliP in NC_018405


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (401),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYTDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEDKISMQEALDKGAQPLREFMLRQ-TREADLALFV---RLSNTGELQGPEAVPMRVLL  171
            F+    +M+ A     +PLR FM R+   + +  L+    R+      + +    + +++
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVSSLAQSFYS  245
            W  L+ +L   FYS
Sbjct  181  WTRLLDGL---FYS  191

456) fliP in NC_021745


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (400),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 75/185 (41%), Positives = 121/185 (66%), Gaps = 8/185 (4%)

Query  66   SSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYLPLRDSK-  124
            ++F +I +VL + R+A+G Q +PPN  L G+AL  T+F+M+PV+  +  D    L +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  125  --ISVEQALDTAATPLRQFMLKQ-TREPDLALFAKMGNLPPIASPDQVPMRAL---IPAF  178
               ++E A      PLR FM ++   + +  L+ +   + P   +D+ +   L   +PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  179  VTSELKTAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHL  238
            V SEL+++FQIGF I+IPF+VID++V+ +L+++GM MV+P  +SLP+KI+LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  239  LLGSL  243
            LL++L
Sbjct  184  LLDGL  188

457) fliP in NC_003296


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (400),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 75/185 (41%), Positives = 121/185 (66%), Gaps = 8/185 (4%)

Query  66   SSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYLPLRDSK-  124
            ++F +I +VL + R+A+G Q +PPN  L G+AL  T+F+M+PV+  +  D    L +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  125  --ISVEQALDTAATPLRQFMLKQ-TREPDLALFAKMGNLPPIASPDQVPMRAL---IPAF  178
               ++E A      PLR FM ++   + +  L+ +   + P   +D+ +   L   +PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  179  VTSELKTAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHL  238
            V SEL+++FQIGF I+IPF+VID++V+ +L+++GM MV+P  +SLP+KI+LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  239  LLGSL  243
            LL++L
Sbjct  184  LLDGL  188

458) fliP in NC_021500


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (400),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 127/191 (67%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSENK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISVDVALERGAQPLREFMLRQ-TREADLALFARLSNSPPIQGPEAVSMRILL---PAY  174
               +++ A  +  +PLR FM R+   + +  L+       P + ++  S   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVSSLAQSFYS  245
            L+ +L   FYS
Sbjct  184  LLDGL---FYS  191

459) fliP in NC_009800


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (400),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 126/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVISELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V+SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

460) fliP in NC_013716


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (399),  Expect = 7e-26, Method: Compositional matrix adjust.
 Identities = 81/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVEAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   E  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALDKGAQPLREFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

461) ENC_42160 in NC_021046


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (399),  Expect = 7e-26, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYTEAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   E  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEDKISMQVALEKGAQPLREFMLRQ-TREADLALFA---RLANTGELQGPEAVPMRILL  171
            F+    +M+ A     +PLR FM R+   + +  L+    R+      + +    + +++
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVSSLAQSFYS  245
            W  L+ +L   FYS
Sbjct  181  WTRLLDGL---FYS  191

462) fliP in NC_014310


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (399),  Expect = 7e-26, Method: Compositional matrix adjust.
 Identities = 76/186 (41%), Positives = 123/186 (67%), Gaps = 10/186 (5%)

Query  66   SSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDSK-  124
            ++F +I +VL + R+A+G Q +PPN  L G+AL  T+F+M+PV+  +  D    L +   
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  125  --ISVEQALDTAATPMRQFMLKQTREPDLA--LFAKMGNLPPIASPDQVPMRAL---IPA  177
               ++E A      P+R FM ++  +PD+   L+ +   + P   +D+ +   L   +PA
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNL-DPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  178  FVTSELKTAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWH  237
            FV SEL+++FQIGF I+IPF+VID++V+ +L+++GM MV+P  +SLP+KI+LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  238  LLLGSL  243
             LL++L
Sbjct  183  RLLDGL  188

463) fliP in NC_011740


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  110 bits (399),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLALFARLANTGPIQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

464) fliP in NC_008253


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

465) fliP in NC_017631


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

466) fliP in NC_010468


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

467) fliP in NC_004431


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

468) fliP in NC_017652


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

469) fliP in NC_017651


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

470) ETEC_2051 in NC_017633


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

471) fliP in NC_011750


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

472) fliP in NC_017660


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

473) EKO11_1826 in NC_016902


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

474) fliP in NC_011993


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

475) fliP in NC_022364


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

476) fliP in NC_017644


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

477) fliP in NC_013364


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

478) fliP in NC_013361


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

479) fliP in NC_017646


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

480) fliP in NC_017634


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

481) fliP in NC_017663


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

482) fliP in NC_011415


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

483) ECSF_1800 in NC_013654


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

484) fliP in NC_011751


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

485) fliP in NC_017641


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 126/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQIR-EADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R++  + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

486) fliP in NC_017635


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

487) fliP in NC_017664


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

488) fliP in NC_010658


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

489) fliP in NC_008258


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

490) fliP in NC_017626


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

491) fliP in NC_011748


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

492) fliP in NC_020163


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

493) fliP in NC_012947


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

494) fliP in NC_012759


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

495) EcDH1_1700 in NC_017625


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

496) fliP in NC_017638


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

497) fliP in NC_009801


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

498) fliP in NC_011745


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

499) fliP in NC_011741


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

500) fliP in NC_010473


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

501) fliP in NC_000913


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

502) fliP in NC_007779


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

503) fliP in NC_013353


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

504) fliP in NC_018650


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

505) fliP in NC_018661


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

506) fliP in NC_018658


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

507) fliP in NC_011601


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 82/197 (42%), Positives = 129/197 (66%), Gaps = 23/197 (11%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQTREADLGVFARLANTG----PLQGPEAVPMRILL  171
            F+    +M+ A     +PLR FM   TR+ D ++ ++L +      P + ++  +   LL
Sbjct  65   FA----AMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  172  ---PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVL  228
               PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  229  VDGWQLLVGSLAQSFYS  245
            VDGW  L+++L   FYS
Sbjct  178  VDGWTRLLDGL---FYS  191

508) fliP in NC_011353


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

509) fliP in NC_002655


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

510) fliP in NC_002695


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

511) fliP in NC_013008


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

512) fliP in NC_013941


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

513) fliP in NC_017656


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

514) fliP in NC_010498


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

515) fliP in NC_017906


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

516) fliP in NC_007712


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  109 bits (398),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 81/194 (42%), Positives = 131/194 (68%), Gaps = 17/194 (8%)

Query  73   SGFTRIIIVLSILRNALGTPSAPPNQILLGLALCLTFFVMSPVLDSI-YRDAYLPFSQDQ  131
            ++F +I +VL I RNA+G   APPN  L G+AL  T+F+M+PV+  +  R   LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  132  ID-MDTAIERAAQPLRQFMLTQTRETDLSLYARL--------GKQAAFAGPEQVPMQILL  182
            +  M++A  +  +PLR FM   TR+ D  + ++L         K+ A   + +  + +++
Sbjct  65   FAAMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMA-DKASRDDLLLVV  120

Query  183  PAFVTSELKTAFQIGFTLFIPFLIIDLVIASVLMALGMMMLPPTTVSLPFKLMLFVMVDG  242
            PAFV SEL+++FQIGF ++IPF++IDL+++++L+ALGM M++P T+SLP+K++LFV+VDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  243  WQLLLGSLAQSFFS  256
            W  LL++L   F+S
Sbjct  181  WTRLLDGL---FYS  191

517) fliP in NC_008800


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 83/190 (44%), Positives = 124/190 (66%), Gaps = 9/190 (4%)

Query  45   TSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAY-LPFSQDK  103
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  104  -ISMEVAMDKGSQPLREFMLR----QTRESDLALYARLANlpplegpevvplRILLPAYV  158
              +ME A     +PLR FM R    + +   L    R+      + +    L +++PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  159  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLL  218
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P +ISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  219  LGSLAQSFYS  228
            L++L   FYS
Sbjct  185  LDGL---FYS  191

518) YE105_C1710 in NC_015224


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 83/190 (44%), Positives = 124/190 (66%), Gaps = 9/190 (4%)

Query  67   TSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAY-LPFSQDK  125
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  126  -ISMEVAMDKGSQPLREFMLR----QTRESDLALYARLANlpplegpevvplRILLPAYV  180
              +ME A     +PLR FM R    + +   L    R+      + +    L +++PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  181  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLL  240
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P +ISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  241  LGSLAQSFYS  250
            L++L   FYS
Sbjct  185  LDGL---FYS  191

519) Y11_14301 in NC_017564


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 83/190 (44%), Positives = 124/190 (66%), Gaps = 9/190 (4%)

Query  67   TSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAY-LPFSQDK  125
            T+F +I +VL + RNA+G   APPN  + G+AL  T+FIM+PVF  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  126  -ISMEVAMDKGSQPLREFMLR----QTRESDLALYARLANlpplegpevvplRILLPAYV  180
              +ME A     +PLR FM R    + +   L    R+      + +    L +++PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  181  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLL  240
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P +ISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  241  LGSLAQSFYS  250
            L++L   FYS
Sbjct  185  LDGL---FYS  191

520) fliP in NC_009792


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  108 bits (392),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 82/197 (42%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAWQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANSG----PLQGPEAVPMRILL  171
            F+    +M+ A     +PLR FM   TR+ D ++ ++L ++     P + ++  +   LL
Sbjct  65   FA----AMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  172  ---PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVL  228
               PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  229  VDGWQLLVGSLAQSFYS  245
            VDGW  L+++L   FYS
Sbjct  178  VDGWTRLLDGL---FYS  191

521) fliP in NC_011147


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  108 bits (392),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 127/191 (67%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLCAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PL +FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

522) fliP in NC_006511


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  108 bits (392),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 127/191 (67%), Gaps = 11/191 (5%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK-  120
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+  +  D  + ++E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  121  --ISMQEALDKGAQPLCAFMLRQ-TREADLALFARLANSGPLQGPEAVPMRILL---PAY  174
               +M+ A     +PL +FM R+   + +  L+       P + ++  +   LL   PA+
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  175  VTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQL  234
            V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  235  LVGSLAQSFYS  245
            L+++L   FYS
Sbjct  184  LLDGL---FYS  191

523) fliP in NC_009654


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  108 bits (391),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 131/187 (71%), Gaps = 19/187 (10%)

Query  65   RIIVVLAILRQAIGLQQTPSNQIMIGMALFLTLFIMTPTL----DRVNEVA--LQPYLKE  118
            +I +VL I R+AIG+QQ+P+N  + G+AL  TLFIM+P +    DRV+ ++  L+ +   
Sbjct  9    KIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDTFAAM  68

Query  119  EMTSIQAVEAASVPVRDFMLAQTREDDIALFV-----KLAGKE-GTIQSMETLPFTILMP  172
            E ++ + VE    P+R FM ++  + DI   +     ++  KE +   S + L   +++P
Sbjct  69   ESAGKHVVE----PLRTFM-TRNLDPDIQTHLLENTQRMWPKEMADKASRDDL--LLVVP  121

Query  173  AFVTSELKTAFQIGFMIFIPFLIVDMVVASVLMAMGMMMLSPIIISLPFKIMLFVMVDGW  232
            AFV SEL+++FQIGF+I+IPF+++D++V+++L+A+GM M++P+ ISLP+KI+LFV+VDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  233  SMIMGTL  239
            + +++ L
Sbjct  182  TRLLDGL  188

524) fliP in NC_009434


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  108 bits (391),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 132/188 (71%), Gaps = 14/188 (7%)

Query  15   TSFTRIIIVFSILRQALGLQQTPSNQiligltlfltlfiMAPVF----DRINQ--DALQP  68
            T+F +I +V+ I R+A+G+QQ+P+N  L G++L  TLFIMAPVF    DR+++  + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  69   YLSEQIPAQEAIARAEVPLKNFM---LAQTRESDL-ELFVRLSQRTDIASPEAAPMTILV  124
            + + + ++++ +     PL+ FM   L    +++L E   R+  +     +    + ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  125  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  184
            PAFV SEL+++FQIGF+I+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  185  WGLIIGTL  192
            W  +++ L
Sbjct  181  WTRLLDGL  188

525) fliP in NC_015740


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  108 bits (392),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 132/188 (71%), Gaps = 14/188 (7%)

Query  74   TSFTRIIIVFSILRQALGLQQTPSNQiligltlfltlfiMAPVF----DRINQ--DALQP  127
            T+F +I +V+ I R+A+G+QQ+P+N  L G++L  TLFIMAPVF    DR+++  + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  128  YLSEQIPAQEAIARAEVPLKNFM---LAQTRESDL-ELFVRLSQRTDIASPEAAPMTILV  183
            + + + ++++ +     PL+ FM   L    +++L E   R+  +     +    + ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  184  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  243
            PAFV SEL+++FQIGF+I+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  244  WGLIIGTL  251
            W  +++ L
Sbjct  181  WTRLLDGL  188

526) fliP-2 in NC_017532


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  108 bits (392),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 132/188 (71%), Gaps = 14/188 (7%)

Query  74   TSFTRIIIVFSILRQALGLQQTPSNQiligltlfltlfiMAPVF----DRINQ--DALQP  127
            T+F +I +V+ I R+A+G+QQ+P+N  L G++L  TLFIMAPVF    DR+++  + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  128  YLSEQIPAQEAIARAEVPLKNFM---LAQTRESDL-ELFVRLSQRTDIASPEAAPMTILV  183
            + + + ++++ +     PL+ FM   L    +++L E   R+  +     +    + ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  184  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  243
            PAFV SEL+++FQIGF+I+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  244  WGLIIGTL  251
            W  +++ L
Sbjct  181  WTRLLDGL  188

527) fliP in NC_008563


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  107 bits (390),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 124/194 (64%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FNEEKISMQEALEKGEQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F     +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

528) fliP in NC_017628


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  107 bits (390),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 124/194 (64%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FNEEKISMQEALEKGEQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F     +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

529) fliP in NC_022370


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  107 bits (390),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 124/194 (64%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FNEEKISMQEALEKGEQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F     +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

530) fliP in NC_011742


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  107 bits (390),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 124/194 (64%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FNEEKISMQEALEKGEQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F     +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

531) fliP in NC_017632


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  107 bits (390),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 124/194 (64%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FNEEKISMQEALEKGEQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F     +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

532) fliP in NC_007946


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  107 bits (390),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 124/194 (64%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM+PV+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FNEEKISMQEALEKGEQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F     +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

533) fliP in NC_018028


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  107 bits (390),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 132/188 (71%), Gaps = 14/188 (7%)

Query  74   TSFTRIIIVFSILRQALGLQQTPSNQiligltlfltlfiMAPVF----ERINQ--EALQP  127
            T+F +I +V+ I R+A+G+QQ+P+N  L G++L  TLFIMAPVF    +R+++  E L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  128  YLSEQIPAQEAIARAEVPLKGFM---LAQTRESDL-ELFVRLSRRTDIASPEAAPMTILV  183
            + + + ++++ +     PL+ FM   L    +++L E   R+  +     +    + ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  184  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  243
            PAFV SEL+++FQIGF+I+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  244  WGLIIGTL  251
            W  +++ L
Sbjct  181  WTRLLDGL  188

534) Psest_1732 in NC_019936


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  107 bits (390),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 132/188 (71%), Gaps = 14/188 (7%)

Query  74   TSFTRIIIVFSILRQALGLQQTPSNQiligltlfltlfiMAPVF----DRINQ--DALQP  127
            T+F +I +V+ I R+A+G+QQ+P+N  L G++L  TLFIMAPVF    DR+++  + L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  128  YLSEQIPAQEAISRAEVPLKNFM---LAQTRESDL-ELFVRLSRRTDIASPEAAPMTILV  183
            + + + ++++ +     PL+ FM   L    +++L E   R+  +     +    + ++V
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  184  PAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDG  243
            PAFV SEL+++FQIGF+I+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  244  WGLIIGTL  251
            W  +++ L
Sbjct  181  WTRLLDGL  188

535) fliP in NC_009792


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  107 bits (388),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 77/188 (41%), Positives = 127/188 (68%), Gaps = 16/188 (8%)

Query  68   TCFTRFIIVLAILRQALGLQQSPPNKiltgialaltllVMRPVWTTI------YTDAIDP  121
            T F ++ +VL I R+A+G+QQ+PPN  L GIALA TL++M PV + +        + +D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  122  FQKDEITLKQALAKAEVPLKNYMLAQTNNKAMAQMMSIA------GIEGDAREQDLTIVT  175
            F   E + K+ +     PL+ +M  + +    ++++  +       + + A  +DL +V 
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  176  PAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDG  235
            PA++LSEL+++FQIGF+IYIPF+VIDLIV++IL+A+GM M++P+ +SLP+K++LFVL DG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WTLIVGTL  243
            WT +++ L
Sbjct  181  WTRLLDGL  188

536) fliP in NC_016822


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  107 bits (389),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSSVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM++V+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

537) fliP in NC_007384


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  107 bits (389),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 125/194 (65%), Gaps = 17/194 (8%)

Query  62   TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSSVID------KIYVDAYQP  115
            T+F +I +V+ + RNA+G   APPN  L G+AL  T+FIM++V+       K   +  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  116  FSEEKISMQEALEKGAQPLREFMLRQ-TREADLGLFARLANTGPLQGPEAVPMRILL---  171
            F+    +M+ A     +PLR FM R+   + +  L+       P + ++  +   LL   
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDG  231
            PA+V SEL+++FQIGF I+IPF++IDL+++++L+ALGM MV+P TI+LP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WQLLVGSLAQSFYS  245
            W  L+++L   FYS
Sbjct  181  WTRLLDGL---FYS  191

538) fliP in NC_019393


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  106 bits (384),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 135/188 (72%), Gaps = 13/188 (6%)

Query  65   TSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQL  124
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  ++FIMAPVF E+ +R  +  L E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  125  TSLDALE----QAKGPMRAFML----SQTRVKDLETFVRI-AGDEGKYADTDEVPLTILI  175
             ++ A+E    +   P+R+FM     ++ +   LE   R+ + + +  A  D+  L +++
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVV  120

Query  176  PAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLMLFVLVDG  235
            PAFV SEL+++FQIGF+++IPF++IDL+V++IL+A+GM M++PM +SLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WNLIFGTL  243
            W  +++ L
Sbjct  181  WTRLLDGL  188

539) fliP in NC_018679


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  106 bits (384),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 135/188 (72%), Gaps = 13/188 (6%)

Query  65   TSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQL  124
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  ++FIMAPVF E+ +R  +  L E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  125  TSLDALE----QAKGPMRAFML----SQTRVKDLETFVRI-AGDEGKYADTDEVPLTILI  175
             ++ A+E    +   P+R+FM     ++ +   LE   R+ + + +  A  D+  L +++
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVV  120

Query  176  PAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLMLFVLVDG  235
            PAFV SEL+++FQIGF+++IPF++IDL+V++IL+A+GM M++PM +SLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WNLIFGTL  243
            W  +++ L
Sbjct  181  WTRLLDGL  188

540) MADE_1005950 in NC_011138


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  106 bits (384),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 135/188 (72%), Gaps = 13/188 (6%)

Query  65   TSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQL  124
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  ++FIMAPVF E+ +R  +  L E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  125  TSLDALE----QAKGPMRAFML----SQTRVKDLETFVRI-AGDEGKYADTDEVPLTILI  175
             ++ A+E    +   P+R+FM     ++ +   LE   R+ + + +  A  D+  L +++
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVV  120

Query  176  PAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLMLFVLVDG  235
            PAFV SEL+++FQIGF+++IPF++IDL+V++IL+A+GM M++PM +SLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WNLIFGTL  243
            W  +++ L
Sbjct  181  WTRLLDGL  188

541) fliP in NC_021716


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  106 bits (384),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 135/188 (72%), Gaps = 13/188 (6%)

Query  65   TSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQL  124
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  ++FIMAPVF E+ +R  +  L E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  125  TSLDALE----QAKGPMRAFML----SQTRVKDLETFVRI-AGDEGKYADTDEVPLTILI  175
             ++ A+E    +   P+R+FM     ++ +   LE   R+ + + +  A  D+  L +++
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVV  120

Query  176  PAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLMLFVLVDG  235
            PAFV SEL+++FQIGF+++IPF++IDL+V++IL+A+GM M++PM +SLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WNLIFGTL  243
            W  +++ L
Sbjct  181  WTRLLDGL  188

542) fliP in NC_021710


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  106 bits (384),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 135/188 (72%), Gaps = 13/188 (6%)

Query  65   TSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQL  124
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  ++FIMAPVF E+ +R  +  L E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  125  TSLDALE----QAKGPMRAFML----SQTRVKDLETFVRI-AGDEGKYADTDEVPLTILI  175
             ++ A+E    +   P+R+FM     ++ +   LE   R+ + + +  A  D+  L +++
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVV  120

Query  176  PAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLMLFVLVDG  235
            PAFV SEL+++FQIGF+++IPF++IDL+V++IL+A+GM M++PM +SLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WNLIFGTL  243
            W  +++ L
Sbjct  181  WTRLLDGL  188

543) fliP in NC_021717


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  106 bits (384),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 135/188 (72%), Gaps = 13/188 (6%)

Query  65   TSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQL  124
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  ++FIMAPVF E+ +R  +  L E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  125  TSLDALE----QAKGPMRAFML----SQTRVKDLETFVRI-AGDEGKYADTDEVPLTILI  175
             ++ A+E    +   P+R+FM     ++ +   LE   R+ + + +  A  D+  L +++
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVV  120

Query  176  PAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLMLFVLVDG  235
            PAFV SEL+++FQIGF+++IPF++IDL+V++IL+A+GM M++PM +SLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WNLIFGTL  243
            W  +++ L
Sbjct  181  WTRLLDGL  188

544) fliP in NC_021712


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  106 bits (384),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 135/188 (72%), Gaps = 13/188 (6%)

Query  65   TSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQL  124
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  ++FIMAPVF E+ +R  +  L E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  125  TSLDALE----QAKGPMRAFML----SQTRVKDLETFVRI-AGDEGKYADTDEVPLTILI  175
             ++ A+E    +   P+R+FM     ++ +   LE   R+ + + +  A  D+  L +++
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVV  120

Query  176  PAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLMLFVLVDG  235
            PAFV SEL+++FQIGF+++IPF++IDL+V++IL+A+GM M++PM +SLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WNLIFGTL  243
            W  +++ L
Sbjct  181  WTRLLDGL  188

545) fliP in NC_021714


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  106 bits (384),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 135/188 (72%), Gaps = 13/188 (6%)

Query  65   TSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQL  124
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  ++FIMAPVF E+ +R  +  L E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  125  TSLDALE----QAKGPMRAFML----SQTRVKDLETFVRI-AGDEGKYADTDEVPLTILI  175
             ++ A+E    +   P+R+FM     ++ +   LE   R+ + + +  A  D+  L +++
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVV  120

Query  176  PAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLMLFVLVDG  235
            PAFV SEL+++FQIGF+++IPF++IDL+V++IL+A+GM M++PM +SLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WNLIFGTL  243
            W  +++ L
Sbjct  181  WTRLLDGL  188

546) fliP in NC_021713


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  106 bits (384),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 135/188 (72%), Gaps = 13/188 (6%)

Query  65   TSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQL  124
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  ++FIMAPVF E+ +R  +  L E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  125  TSLDALE----QAKGPMRAFML----SQTRVKDLETFVRI-AGDEGKYADTDEVPLTILI  175
             ++ A+E    +   P+R+FM     ++ +   LE   R+ + + +  A  D+  L +++
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVV  120

Query  176  PAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLMLFVLVDG  235
            PAFV SEL+++FQIGF+++IPF++IDL+V++IL+A+GM M++PM +SLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WNLIFGTL  243
            W  +++ L
Sbjct  181  WTRLLDGL  188

547) fliP in NC_015723


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  106 bits (385),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 83/194 (43%), Positives = 137/194 (71%), Gaps = 8/194 (4%)

Query  74   MLMMTGFTRVIIVLGLLRSALGTASSPPNQVLVGLSLFLTFFVMAPVFDRVYNDAYKPLS  133
            M++ T+F ++ +VL + R+A+G   +PPN  L G++L  T+F+MAPVF  +  D  K L+
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLP  59

Query  134  ENK---ISleaaaakaaeplkaFMLRQ-TREKDLAMFAQMAK--APEM-QGPEEVPLSIL  186
            E+     ++E+A+    EPL++FM R+   + +  ++ +  +  + EM + +    L ++
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  187  VPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAMGMMMVPPATISLPFKLMLFVLVD  246
            VPAFV SEL+++FQIGF I+IPF++IDL+V+++L+A+GM MV+P TISLP+K++LFVLVD
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  247  GWQLLLGSLAQSFM  260
            GW  LL++L  S+M
Sbjct  180  GWTRLLDGLFYSYM  193

548) sctR in NC_010530


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  106 bits (386),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 83/193 (44%), Positives = 138/193 (72%), Gaps = 2/193 (1%)

Query  26   LMVTSYTKLVIVFGLLRAALGLQQVPPNMVLNGIAIILTAYIMAPIGSDAFDAIKRRada  85
            ++ T++ K+ +V+ + R A+G+QQ PPNM L GIA+  T +IMAP+ S+  D +K+ ++ 
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  86   naafnvndvvtvYDAVSGPLKEFLVKHTEERNRTFFVQSAKRIWPEGRADDLKSDDMMVL  145
              +F   +       V  PL+ F+ ++ +   +T ++++++R+WP   AD    DD++++
Sbjct  62   LDTFAAMESAG--KHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  146  IPSFTLSELTRAFQIGfvvylvfvvvdlivaaillalGMSMVAPTTISVPFKLLLFVMLE  205
            +P+F LSEL  +FQIGF++Y+ F+V+DLIV+ ILLALGM MVAP TIS+P+K+LLFV+++
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  206  GWTQLIQGLVLSY  218
            GWT+L++GL  SY
Sbjct  180  GWTRLLDGLFYSY  192

549) fliP in NC_008314


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  106 bits (386),  Expect = 8e-25, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 137/194 (71%), Gaps = 8/194 (4%)

Query  74   MLLMTGFTRIIIVLGLLRSALGTATSPPNQVLVGLSLFLTFFVMAPVFDRVYNDAYKPLS  133
            M++ T+F +I +VL + R+A+G   +PPN  L G++L  T+F+MAPVF  +  D  K L+
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLP  59

Query  134  ENK---ISleaaaakaaeplkaFMLRQ-TREKDLAMFAQMAK--APEM-QGPEEVPLSIL  186
            E+     ++E+A+    EPL++FM R+   + +  ++ +  +  + EM + +    L ++
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  187  VPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAMGMMMVPPATISLPFKLMLFVLVD  246
            VPAFV SEL+++FQIGF I+IPF++IDL+V+++L+A+GM MV+P TISLP+K++LFVLVD
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  247  GWQLLLGSLAQSFM  260
            GW  LL++L  S+M
Sbjct  180  GWTRLLDGLFYSYM  193

550) S70_18345 in NC_017731


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  106 bits (386),  Expect = 8e-25, Method: Compositional matrix adjust.
 Identities = 75/181 (42%), Positives = 121/181 (67%), Gaps = 14/181 (7%)

Query  64   TSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPV-ADQAYR-----EAYQP  117
            T+F +I +VL + RNA+G   APPN  L G+AL  T+F+M+PV ++ + R     E  + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  118  FSEDKISLETALERGTAPFRTFMLGQ-TRESDLALFARIAKV---GEIQEAKDVPMRILV  173
            F+    ++E+A  +   P+RTFM  +   + +  L+    ++      + A    + ++V
Sbjct  65   FA----AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  174  PAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDG  233
            PAF+ SEL+++FQIGF I+IPF++IDL+V+++L+ALGM MV+P T+SLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  234  W  234
            W
Sbjct  181  W  181

551) fliP in NC_018645


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  106 bits (385),  Expect = 9e-25, Method: Compositional matrix adjust.
 Identities = 74/179 (42%), Positives = 121/179 (68%), Gaps = 10/179 (5%)

Query  67   TPFTRLIVVFHFLRQAIGTQSSPPNQVIVGLALFMTFFIIKPVAQEIYQQ--SLNPYLER  124
            T+F ++ +V+ + R+AIG Q +PPN  + G+AL  T+FI+ PV  E+ ++   L   L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  125  EITYEKAFESAQVPIRKFLLLN-TRESDIALFVKGA-----DMKKPETRDDVSLLVLIPA  178
              + E A      P+R F+  N   + +  L+ +       +M    +RDD  LL+++PA
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVVPA  122

Query  179  YVISELKTAFIIGFVLYIPFIVIDMVVASVLLAMGMMMLPPVMISLPFKLMLFVLVDGW  237
            +V+SEL+++F IGF++YIPFIVID++V+++LLA+GM M++P+ ISLP+K++LFVLVDGW
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

552) fliP in NC_018632


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  105 bits (382),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 80/188 (43%), Positives = 135/188 (72%), Gaps = 13/188 (6%)

Query  65   TSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQL  124
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  ++FIMAPVF E+ +R  +  L E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  125  TSLDALE----QAKGPMRAFML----SQTRVKDLETFVRI-AGDEGKYADTNEVPLTILI  175
             ++ A+E    +   P+R+FM     ++ +   LE   R+ + + +  A  ++  L +++
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVV  120

Query  176  PAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLMLFVLVDG  235
            PAFV SEL+++FQIGF+++IPF++IDL+V++IL+A+GM M++PM +SLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WNLIFGTL  243
            W  +++ L
Sbjct  181  WTRLLDGL  188

553) fliP in NC_018692


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  105 bits (382),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 80/188 (43%), Positives = 135/188 (72%), Gaps = 13/188 (6%)

Query  65   TSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQL  124
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  ++FIMAPVF E+ +R  +  L E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  125  TSLDALE----QAKGPMRAFML----SQTRVKDLETFVRI-AGDEGKYADTNEVPLTILI  175
             ++ A+E    +   P+R+FM     ++ +   LE   R+ + + +  A  ++  L +++
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVV  120

Query  176  PAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLMLFVLVDG  235
            PAFV SEL+++FQIGF+++IPF++IDL+V++IL+A+GM M++PM +SLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WNLIFGTL  243
            W  +++ L
Sbjct  181  WTRLLDGL  188

554) fliP in NC_018678


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  105 bits (382),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 80/188 (43%), Positives = 135/188 (72%), Gaps = 13/188 (6%)

Query  65   TSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQL  124
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  ++FIMAPVF E+ +R  +  L E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  125  TSLDALE----QAKGPMRAFML----SQTRVKDLETFVRI-AGDEGKYADTNEVPLTILI  175
             ++ A+E    +   P+R+FM     ++ +   LE   R+ + + +  A  ++  L +++
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVV  120

Query  176  PAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLMLFVLVDG  235
            PAFV SEL+++FQIGF+++IPF++IDL+V++IL+A+GM M++PM +SLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WNLIFGTL  243
            W  +++ L
Sbjct  181  WTRLLDGL  188

555) fliP in NC_015554


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  105 bits (381),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 80/188 (43%), Positives = 136/188 (73%), Gaps = 13/188 (6%)

Query  66   TSFTRIIVVLSILRQAIGLQQSPSNQILVGVSLFLSMFIMAPVFEEINERALQPYLSEQM  125
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  ++FIMAPVF E+ +R  +  L+E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  TSLDAIE----QAKGPMRAFML----SQTRVKDLETFVRI-AGDEGKYADTDEVPLTILI  176
             ++ A+E    +   P+R+FM     ++ +   LE   R+ + + +  A  D+  L +++
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVV  120

Query  177  PAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLMLFVLVDG  236
            PAFV SEL+++FQIGF+++IPF++IDL+V++IL+A+GM M++PM +SLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  237  WNLIFGTL  244
            W  +++ L
Sbjct  181  WTRLLDGL  188

556) Rahaq2_2559 in NC_016818


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  104 bits (379),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 82/190 (44%), Positives = 126/190 (67%), Gaps = 11/190 (5%)

Query  78   SFTRIIIVLGLLRNALGTPSAPPNQVllglglfltffVMAPVFDKIYSDAYQPFSENK--  135
            +F +I +VL + RNA+G   APPN  L G++L  T+F+MAPVF  + +D  + ++E+   
Sbjct  6    AFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLDT  64

Query  136  -ITMQEAMDKGAQPLRQFMLRQ-TRESDLALYARLANIPPLAGPEAVPMRILL---PAYV  190
              +M+ A     +PLR FM R+   + +  L      + P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  191  TSELKTAFQIGFTVFIPFMIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  250
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  251  LGSLAQSFYS  260
            L++L   FYS
Sbjct  185  LDGL---FYS  191

557) fliP in NC_017047


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  104 bits (379),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 82/190 (44%), Positives = 126/190 (67%), Gaps = 11/190 (5%)

Query  78   SFTRIIIVLGLLRNALGTPSAPPNQVllglglfltffVMAPVFDKIYSDAYQPFSENK--  135
            +F +I +VL + RNA+G   APPN  L G++L  T+F+MAPVF  + +D  + ++E+   
Sbjct  6    AFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLDT  64

Query  136  -ITMQEAMDKGAQPLRQFMLRQ-TRESDLALYARLANIPPLAGPEAVPMRILL---PAYV  190
              +M+ A     +PLR FM R+   + +  L      + P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  191  TSELKTAFQIGFTVFIPFMIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  250
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  251  LGSLAQSFYS  260
            L++L   FYS
Sbjct  185  LDGL---FYS  191

558) Rahaq_2499 in NC_015061


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  104 bits (379),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 82/190 (44%), Positives = 126/190 (67%), Gaps = 11/190 (5%)

Query  78   SFTRIIIVLGLLRNALGTPSAPPNQVllglglfltffVMAPVFDKIYSDAYQPFSENK--  135
            +F +I +VL + RNA+G   APPN  L G++L  T+F+MAPVF  + +D  + ++E+   
Sbjct  6    AFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLDT  64

Query  136  -ITMQEAMDKGAQPLRQFMLRQ-TRESDLALYARLANIPPLAGPEAVPMRILL---PAYV  190
              +M+ A     +PLR FM R+   + +  L      + P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  191  TSELKTAFQIGFTVFIPFMIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  250
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  251  LGSLAQSFYS  260
            L++L   FYS
Sbjct  185  LDGL---FYS  191

559) fliP in NC_010530


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  103 bits (375),  Expect = 7e-24, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 137/194 (71%), Gaps = 8/194 (4%)

Query  87   MLMMTGFTRVIIVLGLLRNALGTATSPPNQVLVGLSLFLTFFVMAPVFDRVYNDAYKPLS  146
            M++ T+F ++ +VL + RNA+G   +PPN  L G++L  T+F+MAPVF  +  D  K L+
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLP  59

Query  147  enk---lsleaaaakaaeplkaFMLRQ-TREKDLAMFAQMAK--APEM-QGPEEVPLSIL  199
            E+     ++E+A+    EPL++FM R+   + +  ++ +  +  + EM + +    L ++
Sbjct  60   EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  200  VPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAMGMMMVPPATISLPFKLMLFVLVD  259
            VPAFV SEL+++FQIGF I+IPF++IDL+V+++L+A+GM MV+P TISLP+K++LFVLVD
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  260  GWQLLLGSLAQSFM  273
            GW  LL++L  S+M
Sbjct  180  GWTRLLDGLFYSYM  193

560) fliP in NC_004547


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 87/190 (46%), Positives = 128/190 (68%), Gaps = 9/190 (4%)

Query  75   TSFTRIIIVLSLLRNALGTPTAPPNQVllgltlfltffVMSPVLNRVYDEAY-LPFSQDQ  133
            T+F +I +VL + RNA+G   APPN  L G++L  T+F+M+PV++ + D    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  134  IS-MEVAIERGAEPLREFMLRQ-TRETDLALFTRLAEI-PEIQGPEAVPMRVLL--PAFV  188
            ++ ME A  +  EPLR FM R+   + +  L+     + P   +  A    +LL  PAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  189  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  248
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  249  LGSLAQSFYS  258
            L++L   FYS
Sbjct  185  LDGL---FYS  191

561) fliP in NC_011567


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 75/181 (42%), Positives = 120/181 (67%), Gaps = 6/181 (3%)

Query  36   LIMVTSFTRIVIVLSFVRTALGTQQMPPNQVMIGLSLFLTFFIMAPTFQQINR--DALQP  93
            +I+ T+F +I +VL + R A+G QQ PPN  + G++L  T+FIMAP F ++      L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  94   LFDEKINLEQAYERAEAPLKEFMSKHTRQKDLALFLSYAGAEQPKTVQDIPMSA----LV  149
             +D    +E A  +   PL+ FM+++      + +L  +    PK + D +       +V
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  150  PAFAISELKTAFQIGFMLFIPFLVIDMIVAsvlmsmgmmmlppvmISLPFKILLFVLVDG  209
            PAF +SEL+++FQIGF+++IPF+VID+IV+++L+++GM M++P+ ISLP+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  210  W  210
            W
Sbjct  181  W  181

562) fliP in NC_016041


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 78/191 (41%), Positives = 135/191 (71%), Gaps = 19/191 (9%)

Query  73   TSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEINEKALQPYLSEEM  132
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  ++FIMAPVF E+ ++  +  L+E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  133  TSIEAFNIAK----EPMRAFMLSQTRVKDLETFVQIGGYE--------DLYDDPADVPLT  180
             ++ A + A     EP+R+FM      ++L+  +Q    E        ++ D ++   L 
Sbjct  63   DTFAAMESAGKHVVEPLRTFM-----TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  181  VLIPAFVTSELKTAFQIGFMLFIPFLILDLVVasilmamgmmmlspmiVSLPFKLMLFVL  240
            +++PAFV SEL+++FQIGF+++IPF+++DL+V++IL+A+GM M++PM +SLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  241  VDGWNLIFGTL  251
            VDGW  +++ L
Sbjct  178  VDGWTRLLDGL  188

563) fliP in NC_012793


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  101 bits (366),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 77/188 (41%), Positives = 125/188 (67%), Gaps = 8/188 (4%)

Query  38   MMTC--FTRIVIVLSFVRTSLGTQQMPPNQVLVGLALFLTFFIMAPTFKEINDQA--LQP  93
            M+ C  F +I +VL + R ++G QQ PPN  L G+AL  T+FIMAP F E+ D+   L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  94   LFSEKISLEQAYERASVPIKEFMSKHTRQKDLALFLSYSGAEKPKSVQDIP----LTTLV  149
             +    ++E A  +   P++ FM+++      + +L  +    PK + D +    L  +V
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  150  PAFAISEIKTAFQMGFMIFIPFLVIDMIVAsvlmsmgmmmlppvmISLPFKILLFVLVDG  209
            PAF +SE++++FQ+GF+I+IPF+VID+IV+++L+++GM M++P+ ISLP+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  210  WYLVVKSL  217
            W  ++ +L
Sbjct  181  WTRLLDGL  188

564) W5S_1792 in NC_017845


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  101 bits (366),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 84/192 (44%), Positives = 132/192 (69%), Gaps = 13/192 (6%)

Query  43   TSFTRIIIVLSLLRNALGTPTAPPNQVllgltlfltffVMSPVLNRVYEEAY-LPFSQDQ  101
            T+F +I +VL + RNA+G   APPN  L G++L  T+F+M+PV++ + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  102  IS-MEVAIERGAEPVREFMLRQ-TRETDLALFT---RL--AEIPEIQGPEAVPMRVLLPA  154
            ++ ME A  +  EP+R FM R+   + +  L+    R+   E+++  + + + + V  PA
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV--PA  122

Query  155  FVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQ  214
            FV SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  215  LLLGSLAQSFYS  226
             LL++L   FYS
Sbjct  183  RLLDGL---FYS  191

565) fliP in NC_007481


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  101 bits (366),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 75/186 (41%), Positives = 134/186 (73%), Gaps = 10/186 (5%)

Query  61   TSFTRIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIMAPIYQQVNERAIEPYLSEQV  120
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  ++FIMAP++ ++ +R     L+E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  121  TSMEALELAK----EPMKAFML----SQVRIKDLETFAKIAGYDQLDSPEATPLIVLIPA  172
             +  A+E A     EP+++FM     ++++   LE   ++   +  D +    L++++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  173  FVTSELQTAFIIGFMFFIPFLIVDlvvasvlmamgmmmlspmIVSLPFKIMLFVLVDGWS  232
            FV SELQ++F IGF+++IPF+++DL+V+++L+A+GM M++PM +SLP+KI+LFVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  233  LVMGTL  238
             +++ L
Sbjct  183  RLLDGL  188

566) PC1_2585 in NC_012917


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  101 bits (365),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 86/190 (46%), Positives = 128/190 (68%), Gaps = 9/190 (4%)

Query  75   TSFTRIIIVLSLLRNALGTPTAPPNQVllgltlfltffVMSPVLNRVYEEAY-LPFSQDQ  133
            T+F +I +VL + RNA+G   APPN  L G++L  T+F+M+PV++ + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  134  IS-MEVAIERGAEPVREFMLRQ-TRETDLALFTRLAEI-PEIQGPEAVPMRVLL--PAFV  188
            ++ ME A  +  EP+R FM R+   + +  L+     + P   +  A    +LL  PAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  189  TSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  248
             SEL+++FQIGF I+IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  249  LGSLAQSFYS  258
            L++L   FYS
Sbjct  185  LDGL---FYS  191

567) PCC21_026900 in NC_018525


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  100 bits (364),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 85/192 (45%), Positives = 132/192 (69%), Gaps = 13/192 (6%)

Query  75   TSFTRIIIVLSLLRNALGTPTAPPNQVllgltlfltffVMSPVLNRVYDEAY-LPFSQDQ  133
            T+F +I +VL + RNA+G   APPN  L G++L  T+F+M+PV++ + D    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  134  IS-MEVAIERGAEPVREFMLRQ-TRETDLALFT---RL--AEIPEIQGPEAVPMRVLLPA  186
            ++ ME A  +  EP+R FM R+   + +  L+    R+   E+++  + + + + V  PA
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV--PA  122

Query  187  FVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQ  246
            FV SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  247  LLLGSLAQSFYS  258
             LL++L   FYS
Sbjct  183  RLLDGL---FYS  191

568) fliP in NC_013421


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  100 bits (364),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 85/190 (45%), Positives = 128/190 (68%), Gaps = 9/190 (4%)

Query  75   TSFTRIIIVLSLLRNALGTPTAPPNQVllgltlfltffVMSPVLNRVYEEAY-LPFSQDQ  133
            T+F +I +VL + RNA+G   APPN  L G++L  T+F+M+PV++ + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  134  IS-MEVAIERGAEPVREFMLRQ-TRETDLALFTRLAEI-PEIQGPEAVPMRVLL--PAFV  188
            ++ ME A  +  EP+R FM R+   + +  L+     + P   +  A    +LL  PAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  189  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL  248
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  249  LGSLAQSFYS  258
            L++L   FYS
Sbjct  185  LDGL---FYS  191

569) fliP in NC_002570


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  100 bits (364),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 77/192 (41%), Positives = 130/192 (68%), Gaps = 8/192 (4%)

Query  49   LMTC--FTRVVIVLSFVRTGLATQTMPPNQVIIGIALFITFFIMAPVFAEVNDQA--LTP  104
            ++ C  F ++ +VL + R +++ Q  PPN  + GIAL  T+FIMAPVF+E+ D+   L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  105  FLDGEIDQQEAMDRAAIPMKEFMAKHTREKDLALFMGYAGHDRPESIEDIP----LTALV  160
             LD     + A  +   P++ FM+++      + ++  + + +P  + D +    L  +V
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  161  PAFAISELKTAFQIGFLIFIPFLVIDMIVASVlmsmgmmmlppimislpFKILLFVLVDG  220
            PAF +SEL+++FQIGFLI+IPF+VID+IV+++L+++GM M++P+ ISLP+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  221  WYLVVQSLLLSF  232
            W  ++++L+ S+
Sbjct  181  WTRLLDGLFYSY  192

570) fliP in NC_017531


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  100 bits (362),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 124/190 (66%), Gaps = 9/190 (4%)

Query  61   TSFTRIIIVFGLLRNALGTPSAPPNQVllgltlfltffIMAPTFDKIYQDAY-LPFSQDK  119
            T+F +I +V+ + RNA+G   APPN  L G++L  T+FIMAP F  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  120  IS-MDVAIDKGAQPLREFMLRQ-TREADLALFARLANTAPIAGPEAVPMRILL---PAYV  174
            ++ M+ A     +PLR FM R+   + +  L+       P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  175  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLL  234
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TI+LP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  235  VGSLAQSFYS  244
            +++L   FYS
Sbjct  185  LDGL---FYS  191

571) fliP in NC_013956


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  100 bits (362),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 124/190 (66%), Gaps = 9/190 (4%)

Query  61   TSFTRIIIVFGLLRNALGTPSAPPNQVllgltlfltffIMAPTFDKIYQDAY-LPFSQDK  119
            T+F +I +V+ + RNA+G   APPN  L G++L  T+FIMAP F  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  120  IS-MDVAIDKGAQPLREFMLRQ-TREADLALFARLANTAPIAGPEAVPMRILL---PAYV  174
            ++ M+ A     +PLR FM R+   + +  L+       P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  175  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLL  234
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TI+LP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  235  VGSLAQSFYS  244
            +++L   FYS
Sbjct  185  LDGL---FYS  191

572) PAGR_g1736 in NC_017554


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  100 bits (362),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 124/190 (66%), Gaps = 9/190 (4%)

Query  61   TSFTRIIIVFGLLRNALGTPSAPPNQVllgltlfltffIMAPTFDKIYQDAY-LPFSQDK  119
            T+F +I +V+ + RNA+G   APPN  L G++L  T+FIMAP F  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  120  IS-MDVAIDKGAQPLREFMLRQ-TREADLALFARLANTAPIAGPEAVPMRILL---PAYV  174
            ++ M+ A     +PLR FM R+   + +  L+       P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  175  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLL  234
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TI+LP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  235  VGSLAQSFYS  244
            +++L   FYS
Sbjct  185  LDGL---FYS  191

573) fliP in NC_016816


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  100 bits (362),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 124/190 (66%), Gaps = 9/190 (4%)

Query  61   TSFTRIIIVFGLLRNALGTPSAPPNQVllgltlfltffIMAPTFDKIYQDAY-LPFSQDK  119
            T+F +I +V+ + RNA+G   APPN  L G++L  T+FIMAP F  + +    LP   D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  120  IS-MDVAIDKGAQPLREFMLRQ-TREADLALFARLANTAPIAGPEAVPMRILL---PAYV  174
            ++ M+ A     +PLR FM R+   + +  L+       P   ++  +   LL   PA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  175  TSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLL  234
             SEL+++FQIGF ++IPF++IDL+V+++L+ALGM MV+P TI+LP+K++LFVLVDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  235  VGSLAQSFYS  244
            +++L   FYS
Sbjct  185  LDGL---FYS  191

574) SAR116_0822 in NC_014010


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =  100 bits (361),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 132/188 (71%), Gaps = 6/188 (3%)

Query  77   TSFTRIIIVLSILRQAMGTQQTPPNQVLVAIALFLTFFIMAPTFTQLND--MALSPYMEG  134
            T+F +I +VL I R+A+G QQ+PPN  L +IAL  T+FIMAP F+++ D    L+  ++ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  135  TMPMETALSDGTNIMKDFLVQN---TRVTDLVMFTE-MAGDTTYEDPKDVPLTVLLPAFI  190
              +ME+A  +  + ++ F+ +N      T+L+  T+ M      + +    L +++PAF+
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  191  TSELKTAFQIGFLLFLPFLVIDMVIAsilmslgmmmlspmlVALPFKLLLFVLVDGWAMT  250
             SEL+++FQIGFL+++PF+VID+++++IL++LGM M++PM ++LP+K+LLFVLVDGW+  
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  251  VGSLVATY  258
            +++L  +Y
Sbjct  185  LDGLFYSY  192

575) fliP in NC_010382


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 99.6 bits (359),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 123/188 (66%), Gaps = 6/188 (3%)

Query  36   LILMTSFARIVIVLSFVRTALATQQMPPNQVIVGLALFLTFFIMAPTFQEVNK--EALQP  93
            +I+ T+F +I +VL + R A++ QQ PPN  + G+AL  T+FIMAP F E+      L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  94   LFSEEIGLEEAYDRASLPFKEFMSKHTRQKDLDLFLSYNQAEKPASVEEIP----LTMLV  149
             +    ++E A  +   P++ FM+++        +L   Q   P  + + +    L ++V
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  150  PAFALSEIKTAFQIGFMIFIPFLVIDMIVASTlmsmgmmmlppvmISLPFKILLFVLVDG  209
            PAF LSE++++FQIGF+I+IPF+VID+IV++ L+++GM M++P+ ISLP+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  210  WYLVMKSL  217
            W  ++ +L
Sbjct  181  WTRLLDGL  188

576) fliP in NC_014483


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 99.4 bits (358),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 80/188 (43%), Positives = 122/188 (65%), Gaps = 6/188 (3%)

Query  68   TSFTRIVIVLGFVRTSLGTQQMPPNQVLVGLALFLTLFIMAPTFSAMNETA--LQPYLKG  125
            T+F +I +VL + R ++G QQ PPN  L G+AL  TLFIMAP FS M +    L   L  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  126  DITQSQALDKASVPIKTFMFSHTREKDLLLFMKYTKMEKPKNYQDIP----LTVMVPAYA  181
              +   A      P++TFM  +        ++  T+   PK+  D +    L ++VPA+ 
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  182  ISELKTAFQMGFMIFIPFLVIDIVVSSTlmamgmmmlppvmISLPFKILLFVLVDGWYLV  241
            +SEL+++FQ+GF+I+IPF+VID++VS+ L+A+GM M++P+ ISLP+KILLFVLVDGW  +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  242  VKSLLLSF  249
            + +L+ S+
Sbjct  185  LDGLFYSY  192

577) fliP in NC_017542


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 99.4 bits (358),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 80/188 (43%), Positives = 122/188 (65%), Gaps = 6/188 (3%)

Query  68   TSFTRIVIVLGFVRTSLGTQQMPPNQVLVGLALFLTLFIMAPTFSAMNETA--LQPYLKG  125
            T+F +I +VL + R ++G QQ PPN  L G+AL  TLFIMAP FS M +    L   L  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  126  DITQSQALDKASVPIKTFMFSHTREKDLLLFMKYTKMEKPKNYQDIP----LTVMVPAYA  181
              +   A      P++TFM  +        ++  T+   PK+  D +    L ++VPA+ 
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  182  ISELKTAFQMGFMIFIPFLVIDIVVSSTlmamgmmmlppvmISLPFKILLFVLVDGWYLV  241
            +SEL+++FQ+GF+I+IPF+VID++VS+ L+A+GM M++P+ ISLP+KILLFVLVDGW  +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  242  VKSLLLSF  249
            + +L+ S+
Sbjct  185  LDGLFYSY  192

578) PPSC2_c2104 in NC_014622


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 99.4 bits (358),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 80/188 (43%), Positives = 122/188 (65%), Gaps = 6/188 (3%)

Query  68   TSFTRIVIVLGFVRTSLGTQQMPPNQVLVGLALFLTLFIMAPTFSAMNETA--LQPYLKG  125
            T+F +I +VL + R ++G QQ PPN  L G+AL  TLFIMAP FS M +    L   L  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  126  DITQSQALDKASVPIKTFMFSHTREKDLLLFMKYTKMEKPKNYQDIP----LTVMVPAYA  181
              +   A      P++TFM  +        ++  T+   PK+  D +    L ++VPA+ 
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  182  ISELKTAFQMGFMIFIPFLVIDIVVSSTlmamgmmmlppvmISLPFKILLFVLVDGWYLV  241
            +SEL+++FQ+GF+I+IPF+VID++VS+ L+A+GM M++P+ ISLP+KILLFVLVDGW  +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  242  VKSLLLSF  249
            + +L+ S+
Sbjct  185  LDGLFYSY  192

579) Halha_0669 in NC_019978


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 99.4 bits (358),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 74/179 (42%), Positives = 120/179 (68%), Gaps = 12/179 (6%)

Query  73   SFTRIIVVLSFLRRALATQRMPPNQVLIGLAIFLTIYIMAPVGQDINQNA--LQPYLAEK  130
            +F +I +VL + R A++ Q+ PPN  L G+A+  T++IMAPV  ++ +    L   L   
Sbjct  6    AFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDTF  65

Query  131  IDRGTAFDRTIKPLRRFMFKQTREKDIALFVNLSNSKRPKGPKELST-------YVLIPA  183
                +A  + + PLR FM   TR+ D  +  +L ++ +   PKE++         +++PA
Sbjct  66   AAMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  184  FIISELKTAFQIGFMIYLPFVVIDMIVASTlmsmgmmmlppvmISLPFKILLFVLVDGW  242
            F++SEL+++FQIGF+IY+PF+VID+IV++ L+++GM M++P+ ISLP+KILLFVLVDGW
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

580) fliP in NC_020210


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 99.1 bits (357),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/192 (42%), Positives = 125/192 (66%), Gaps = 8/192 (4%)

Query  38   MMTC--FTRIVIVLSFVRTALGTQQMPPNQVLVGLALFLTFFIMAPTWKEINDQA--LQP  93
            M+ C  F +I +VL + R A+G QQ PPN  L G+AL  T+FIMAP   E+ D+   L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  94   LFADKIDLEEAYERAAVPLKQFMSQYTRQEDLALFLSYSGAKQPKTVNDIPMTA----LV  149
             +     +E A  +   PL+ FM++    +  + +L  +    PK + D +       +V
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  150  PAFAISELKTAFQMGFMIFIPFLVIDMIVAsvlmsmgmmmlppvmISLPFKILLFVLVDG  209
            PAF +SEL+++FQ+GF+I+IPF+VID+IV+++L+++GM M++P+ ISLP+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  210  WHLVVKSLLQSF  221
            W  ++ +L+ S+
Sbjct  181  WTRLLDGLFYSY  192

581) fliP in NC_006510


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 99.1 bits (357),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/192 (42%), Positives = 125/192 (66%), Gaps = 8/192 (4%)

Query  38   MMTC--FTRIVIVLSFVRTALGTQQMPPNQVLVGLALFLTFFIMAPTWKEINDQA--LQP  93
            M+ C  F +I +VL + R A+G QQ PPN  L G+AL  T+FIMAP   E+ D+   L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  94   LFADKIDLEEAYERAAVPLKQFMSQYTRQEDLALFLSYSGAKQPKTINDIPMTA----LV  149
             +     +E A  +   PL+ FM++    +  + +L  +    PK + D +       +V
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  150  PAFAISELKTAFQMGFMIFIPFLVIDMIVAsvlmsmgmmmlppvmISLPFKILLFVLVDG  209
            PAF +SEL+++FQ+GF+I+IPF+VID+IV+++L+++GM M++P+ ISLP+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  210  WHLVVKSLLQSF  221
            W  ++ +L+ S+
Sbjct  181  WTRLLDGLFYSY  192

582) HPL003_18215 in NC_016641


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score =   99 bits (360),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 127/190 (67%), Gaps = 10/190 (5%)

Query  68   TSFTRIVIVLGFVRTSLGTQQMPPNQVLVGLALFLTLFIMAPTFSAMNETALQPYLKGDL  127
            T+F +I +VL + R ++G QQ PPN  L G+AL  TLFIMAP FS M +   +  L  +L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  128  TQSQALDKAA----VPIKTFMFSHTREKDLLLFMKYTKMEKPKDYQDIP----LTVMVPA  179
                A++ A+     P++TFM  +        ++  T+   PK+  D +    L ++VPA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  180  YAISELKTAFQMGFMIFIPFLVIDIVVASTlmamgmmmlppvmISLPFKILLFVLVDGWY  239
            + +SEL+++FQ+GF+I+IPF+VID++V++ L+A+GM M++P+ ISLP+KILLFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  240  LVVKSLLLSF  249
             ++ +L+ S+
Sbjct  183  RLLDGLFYSY  192

583) GC56T3_2319 in NC_014206


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 98.9 bits (356),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 125/192 (66%), Gaps = 8/192 (4%)

Query  38   MMTC--FTRIVIVLSFVRTALGTQQMPPNQVLVGLALFLTFFIMAPTWKDINDQA--LQP  93
            M+ C  F +I +VL + R A+G QQ PPN  L G+AL  T+FIMAP   ++ D+   L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  94   LFADKIDLEEAYERAAVPLKQFMSQYTRQEDLALFLSYSGAKQPKTINDIPMTA----LV  149
             +     +E A  +   PL+ FM++    +  + +L  +    PK + D +       +V
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  150  PAFAISELKTAFQMGFMIFIPFLVIDMIVAsvlmsmgmmmlppvmISLPFKILLFVLVDG  209
            PAF +SEL+++FQ+GF+I+IPF+VID+IV+++L+++GM M++P+ ISLP+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  210  WHLVVKSLLQSF  221
            W  ++ +L+ S+
Sbjct  181  WTRLLDGLFYSY  192

584) GTCCBUS3UF5_14250 in NC_016593


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 98.9 bits (356),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 125/192 (66%), Gaps = 8/192 (4%)

Query  38   MMTC--FTRIVIVLSFVRTALGTQQMPPNQVLVGLALFLTFFIMAPTWKDINDQA--LQP  93
            M+ C  F +I +VL + R A+G QQ PPN  L G+AL  T+FIMAP   ++ D+   L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  94   LFADKIDLEEAYERAAVPLKQFMSQYTRQEDLALFLSYSGAKQPKTINDIPMTA----LV  149
             +     +E A  +   PL+ FM++    +  + +L  +    PK + D +       +V
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  150  PAFAISELKTAFQMGFMIFIPFLVIDMIVAsvlmsmgmmmlppvmISLPFKILLFVLVDG  209
            PAF +SEL+++FQ+GF+I+IPF+VID+IV+++L+++GM M++P+ ISLP+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  210  WHLVVKSLLQSF  221
            W  ++ +L+ S+
Sbjct  181  WTRLLDGLFYSY  192

585) GYMC52_1141 in NC_014915


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 98.9 bits (356),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 125/192 (66%), Gaps = 8/192 (4%)

Query  38   MMTC--FTRIVIVLSFVRTALGTQQMPPNQVLVGLALFLTFFIMAPTWKDINDQA--LQP  93
            M+ C  F +I +VL + R A+G QQ PPN  L G+AL  T+FIMAP   ++ D+   L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  94   LFADKIDLEEAYERAAVPLKQFMSQYTRQEDLALFLSYSGAKQPKTINDIPMTA----LV  149
             +     +E A  +   PL+ FM++    +  + +L  +    PK + D +       +V
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  150  PAFAISELKTAFQMGFMIFIPFLVIDMIVAsvlmsmgmmmlppvmISLPFKILLFVLVDG  209
            PAF +SEL+++FQ+GF+I+IPF+VID+IV+++L+++GM M++P+ ISLP+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  210  WHLVVKSLLQSF  221
            W  ++ +L+ S+
Sbjct  181  WTRLLDGLFYSY  192

586) fliP in NC_013411


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 98.9 bits (356),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 125/192 (66%), Gaps = 8/192 (4%)

Query  38   MMTC--FTRIVIVLSFVRTALGTQQMPPNQVLVGLALFLTFFIMAPTWKDINDQA--LQP  93
            M+ C  F +I +VL + R A+G QQ PPN  L G+AL  T+FIMAP   ++ D+   L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  94   LFADKIDLEEAYERAAVPLKQFMSQYTRQEDLALFLSYSGAKQPKTINDIPMTA----LV  149
             +     +E A  +   PL+ FM++    +  + +L  +    PK + D +       +V
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  150  PAFAISELKTAFQMGFMIFIPFLVIDMIVAsvlmsmgmmmlppvmISLPFKILLFVLVDG  209
            PAF +SEL+++FQ+GF+I+IPF+VID+IV+++L+++GM M++P+ ISLP+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  210  WHLVVKSLLQSF  221
            W  ++ +L+ S+
Sbjct  181  WTRLLDGLFYSY  192

587) fliP in NC_009328


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 98.9 bits (356),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 77/192 (41%), Positives = 127/192 (67%), Gaps = 8/192 (4%)

Query  38   MMTC--FTRIVIVLSFVRTSLGTQQMPPNQVLIGLALFLTFFIMAPTWKDINDQA--LQP  93
            M+ C  F +I +VL + R ++G QQ PPN  L G+AL  T+FIMAP   ++ D+   L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  94   LFAEKIDLDEAYERAAIPLKQFMSKHTRQQDLALFLSYSGAEQPKTVNDIP----LTALV  149
             +     ++ A  +   PL+ FM+++   +  + +L  +    PK + D +    L  +V
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  150  PAFAISELKTAFQMGFMIFIPFLVIDMIVAsvlmsmgmmmlppvmISLPFKILLFVLVDG  209
            PAF +SEL+++FQ+GF+I+IPF+VID+IV+++L+++GM M++P+ ISLP+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  210  WYLVVKSLLQSF  221
            W  ++ +L+ S+
Sbjct  181  WTRLLDGLFYSY  192

588) Amet_2707 in NC_009633


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 77/192 (41%), Positives = 132/192 (69%), Gaps = 6/192 (3%)

Query  81   LIMMTSFTRIVIVLSFLRNAIATQQTPPTQIIIGLALFLTFFTMAPIATDINT--NALQP  138
            +I+ T+F +I +VL + RNAI+ QQ+PP   + G+AL  T+F MAP+ +++    + L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  139  YlaeelgqeealeraMEPIREFMFRQTREKDLALFIEVSNSEMPTEVADIATST----LI  194
             L    + E A  + +EP+R FM R+      + ++E ++   P E+AD A+      ++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  195  PAFIISELKTAFQMGFILFIPFIVIDMVVASTlmamgmmmlppamISLPFKLLLFIMVDG  254
            PAF++SEL+++FQ+GF+++IPFIVID++V++ L+A+GM M++P  ISLP+K+LLF++VDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  255  WNILVRALIMSF  266
            W  L+ +L+ S+
Sbjct  181  WTRLLDGLFYSY  192

589) fliP in NC_011365


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 131/194 (68%), Gaps = 10/194 (5%)

Query  79   LVMVTAFTRIIVVLSLLRGAIGAQGAPPNTVLIGLALFLTFFVMQPVFQQSWDHGIVPMM  138
            +++ TAF +I +VL + R AIG Q APPN  L G+AL  T+F+M PVF +  D+  V  +
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDR--VKKL  58

Query  139  DGRVSEMEGLTAAA----EPFRTFMLANARPADITTFLHLANVPPPATPAETPWR----V  190
              ++    ++ +A+    EP+RTFM  N  P   T +L+ ++   P   A+ + R    +
Sbjct  59   PEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  191  IMPAFMIGELSRGFEMGFLLYLPFLVIDIVTssvlmslgmmmlPPATISLPFKLIFFVMV  250
            ++PAF+++EL  GF++GFL+Y+PF+VID++ S++L++LGM M++P TISLP+K+++FV+V
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  251  DGWQMVAGGLVRSF  264
            DGW  + +GL  S+
Sbjct  179  DGWTRLLDGLFYSY  192

590) fliP in NC_010125


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 131/194 (68%), Gaps = 10/194 (5%)

Query  72   LVMVTAFTRIIVVLSLLRGAIGAQGAPPNTVLIGLALFLTFFVMQPVFQQSWDHGIVPMM  131
            +++ TAF +I +VL + R AIG Q APPN  L G+AL  T+F+M PVF +  D+  V  +
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDR--VKKL  58

Query  132  DGRVSEMEGLTAAA----EPFRTFMLANARPADITTFLHLANVPPPATPAETPWR----V  183
              ++    ++ +A+    EP+RTFM  N  P   T +L+ ++   P   A+ + R    +
Sbjct  59   PEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  184  IMPAFMIGELSRGFEMGFLLYLPFLVIDIVTssvlmslgmmmlPPATISLPFKLIFFVMV  243
            ++PAF+++EL  GF++GFL+Y+PF+VID++ S++L++LGM M++P TISLP+K+++FV+V
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  244  DGWQMVAGGLVRSF  257
            DGW  + +GL  S+
Sbjct  179  DGWTRLLDGLFYSY  192

591) bglu_1g00190 in NC_012724


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 97.5 bits (351),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 128/188 (69%), Gaps = 14/188 (7%)

Query  84   TSFTRIIIVLSLMRQALGTATTPPNQVLVGLALFLTLFVMSPVID------RAYNDGYKP  137
            T+F +I +VL + R+A+G   +PPN  L G+AL  TLF+M+PV+       +   +    
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  138  FSAGTLPMDQAVQRGLAPFKTFMLKQ-TREGDLALFAKIAKAPAMQGPEDVP---LPLLV  193
            F+A    M+ A ++ + P++TFM ++   + +  L+ +  +  + + ++  +   L L+V
Sbjct  65   FAA----MESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  194  PAFVTSELKTGFQIGFTIFIPFLIIDLvvasvlmsmgmmmvsPTTISLPFKLMLFVLVDG  253
            PAFV SEL++GFQIGF I+IPF++IDL+V+++L+++GM MV+P TISLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  254  WQLLIGSL  261
            W  L+++L
Sbjct  181  WTRLLDGL  188

592) fliP in NC_009483


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 97.0 bits (349),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 132/188 (71%), Gaps = 6/188 (3%)

Query  65   LMMTTSFTRIVVVLSFLRNAIGTQQAPSNQIIIGLSLFLTFFIMAPVWQQINTQA--LQP  122
            +++ T+F +I +VL + RNAIG QQAP+N  + G++L  T+FIMAPV  ++  +   L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  123  YKAQTISQEEAFKRAVAPVRKFMLSQVREKDLALFLSLSKLPRPKNADDIPT----LTLI  178
                  + E A K+ V P+R FM  ++     + +L  ++  +PK+  D ++    L ++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  179  PAYMVSELKTAFQIGFLVFIPFLVLDmvvasvlmsmgmmmlppvmISLPFKILLFVLVDG  238
            PA+++SEL+++FQIGFL++IPF+V+D++V+++L+++GM M++P+ ISLP+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  239  WGLVIGSL  246
            W  ++++L
Sbjct  181  WTRLLDGL  188

593) fliP in NC_010814


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 97.0 bits (349),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 77/187 (42%), Positives = 132/187 (71%), Gaps = 6/187 (3%)

Query  71   IMTTSFTRIVVVLSFLRTALGTQQAPSNQIILALSLFLTFFIMTPVWQQV-NRDAYQPYK  129
            I+ T+F +I +VL + R A+G QQAP+N  + +++L  T+FIM+PV  ++ +R    P  
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEH  61

Query  130  AGTLSQEQAFEK-AVQPVRKFMLSQTREKDLGLFVSLSKQARPKNADDIPT----LTIVP  184
             +T++  ++  K  V+P+R FM  +        ++  +++ +PK+  D ++    L +VP
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  185  AFMISELRTAFQIGFLIYIPFIVVDmvvasvlmsmgmmmlppvmISLPFKILLFVLVDGW  244
            AF++SEL+++FQIGFLIYIPFIV+D++V+++L+++GM M++P+ ISLP+KILLFVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  245  GLVISSL  251
              ++ +L
Sbjct  182  TRLLDGL  188

594) fliP in NC_020802


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 96.5 bits (347),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 80/192 (42%), Positives = 137/192 (72%), Gaps = 15/192 (7%)

Query  62   LVLMTSFTRIVVVMSILRQALGLQQTPSNQVINGIALFLTFFIMTPVFDKINEEALQPYL  121
            +++ T+F +I +V+ I R+A+G+QQ+P+N  + GIAL  T+FIM+PVF  + +   +  L
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--L  58

Query  122  NEDMNIVQAIEQGKK----PLMAFMLAQTRLKDLETFLEIANVQVDTPEEVP-------F  170
             E+++   A+E + K    PL +FM ++    D++T L + N Q   P E++       +
Sbjct  59   PEHLDTFAAMESAGKHVVEPLRTFM-TRNLDPDIQTHL-LENTQRMWPKEMADKASRDDL  116

Query  171  TVLIPAFVTSELKTAFQIGFMIFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLMLFV  230
             +++PAFV SEL+++FQIGF+I+IPF++IDL+V++IL+A+GM M++PM +SLP+K++LFV
Sbjct  117  LLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFV  176

Query  231  LVDGWNLIMGSL  242
            LVDGW  ++++L
Sbjct  177  LVDGWTRLLDGL  188

595) Hipma_0871 in NC_015318


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 96.2 bits (346),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 82/193 (43%), Positives = 139/193 (73%), Gaps = 6/193 (3%)

Query  62   LIMMTSFTRIIIVLAILRQALGTQQMPPNQILIGIALFLTLFIMSPQINTI-YKTAYLPL  120
            +I+ T+F +I +VL I R+A+G QQ PPN  L GIAL  TLFIM+P ++ +  +   LP 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  121  QKNE-ITLEGAYKNATKPLKTFMLKQTRQKDLALFLRIAKKPNPKN-PQELSMD---IVI  175
            + +   ++E+A K+   PL+TFM ++      + +L  +++  PK+ ++  S D   +V+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  176  PAFIISELKTAFEMGFIIYIPFLIIDMVVssilmsmgmmmlppimislpFKLLIFVLADG  235
            PAF++SEL+++F++GF+IYIPF++ID++VS+IL+++GM M++P+ ISLP+K+L+FVL DG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WNLVVMSLFKSFM  248
            W  ++ +LF S+M
Sbjct  181  WTRLLDGLFYSYM  193

596) fliP in NC_018691


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 95.7 bits (344),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 80/188 (43%), Positives = 126/188 (68%), Gaps = 14/188 (7%)

Query  70   C--FTRIIIVFSLLRTAMGTQSAPPNQVllgltlfltffIMSPVLNRVYQEAWVP-LSND  126
            C  F +I +V+ + R A+G Q APPN  L G++L  T+FIM+PV++ +    +V  L+++
Sbjct  4    CTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM--GDRVKKLPEH  61

Query  127  EMGFEQALSVGS---EPFREFMMAQTREPDLA--LFARLAK---TENLNGPEDVPLRVLL  178
               F    S G    EP+R FM ++  +PD+   L+    +    E  + +    L +++
Sbjct  62   LDTFAAMESAGKHVVEPLRTFM-TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  179  PAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDG  238
            PAFV SEL+++FQIGF I+IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  239  WQLLIGSL  246
            W  L+++L
Sbjct  181  WTRLLDGL  188

597) fliP in NC_020514


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 95.7 bits (344),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 78/191 (41%), Positives = 131/191 (69%), Gaps = 19/191 (9%)

Query  66   TSFTRIIIVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEKINETALQPYLNEEL  125
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  ++FIMAPVF  + +   +  L E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  TSIQAYE-IGK---EPLRAFMLAQTRVKDLETFVQIGGMDGQ--------FQDPVDVPMN  173
             ++ A E  GK   EPLR+FM      ++L+  +Q   ++           + +    + 
Sbjct  63   DTFAAMESAGKHVVEPLRTFM-----TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  174  VLIPAFVTSELKTAFQIGFMLFIPFLILDLVVasilmamgmmmlspmiVSLPFKLMLFVL  233
            +++PAFV SEL+++FQIGF+++IPF+++DL+V++IL+A+GM M++PM +SLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  234  VDGWNLIFGTL  244
            VDGW  +++ L
Sbjct  178  VDGWTRLLDGL  188

598) fliP in NC_020134


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 95.2 bits (342),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 73/181 (41%), Positives = 126/181 (70%), Gaps = 10/181 (5%)

Query  74   TSFTRIIVVLSFLRNAMGTQQMPPNQVLIGLALFLTFFIMSPVLSDLNEQALKPLSENEI  133
            T+F +I +VL + RNA+G QQ PPN  L G+AL  T+FIM+PV+S++ ++ +K L+E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDR-VKKLPEHLD  63

Query  134  TLEEAIDKASYI---MKDFMLNKAKVREKDLALFANIARIEEPENLMDLPMK----VVIP  186
            T+      +  +   ++ FM  +    + +  L+ N  R+  P ++ D + +    +V+P
Sbjct  64   TFAAMESAGKHVVEPLRTFM-TRNLDPDIQTHLLENTQRMW-PKEMADKASRDDLLLVVP  121

Query  187  AFMISELTTAFKMGFMLYIPFLVIDMVVASTlmsmgmmmlppvmISLPFKILLFLLVDGW  246
            AF++SEL ++F++GF++YIPF+VID++V++ L+++GM M++P+ ISLP+KILLF+LVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  247  N  247
             
Sbjct  182  T  182

599) fliP in NC_020887


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 95.2 bits (342),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 73/181 (41%), Positives = 126/181 (70%), Gaps = 10/181 (5%)

Query  74   TSFTRIIVVLSFLRNAMGTQQMPPNQVLIGLALFLTFFIMSPVLSDLNEQALKPLSENEI  133
            T+F +I +VL + RNA+G QQ PPN  L G+AL  T+FIM+PV+S++ ++ +K L+E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDR-VKKLPEHLD  63

Query  134  TLEEAIDKASYI---MKDFMLNKAKVREKDLALFANIARIEEPENLMDLPMK----VVIP  186
            T+      +  +   ++ FM  +    + +  L+ N  R+  P ++ D + +    +V+P
Sbjct  64   TFAAMESAGKHVVEPLRTFM-TRNLDPDIQTHLLENTQRMW-PKEMADKASRDDLLLVVP  121

Query  187  AFMISELTTAFKMGFMLYIPFLVIDMVVASTlmsmgmmmlppvmISLPFKILLFLLVDGW  246
            AF++SEL ++F++GF++YIPF+VID++V++ L+++GM M++P+ ISLP+KILLF+LVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  247  N  247
             
Sbjct  182  T  182

600) fliP in NC_021150


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 94.9 bits (341),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 78/187 (42%), Positives = 124/187 (67%), Gaps = 13/187 (6%)

Query  73   RIIIVLGLLRTAIGTPAAPPNQVllglalfltlFIMSPVLDRTYQSAWLPFSRDEIG-FE  131
            +I +VL + R AIG   APPN  L G+AL  TLFIM+PV+     + ++    ++++ F 
Sbjct  9    KIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM--GDRVKKLPEHLDTFA  66

Query  132  QFLETGSQ---PFREFMLAQ-TRESDLALFARLARL--GEL-EGPEQVPLRVLMPAFVTS  184
                +G +   P+R FM  +   + +  L+    R+   E+ + + +  L +++PAFV S
Sbjct  67   AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFVLS  126

Query  185  ELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLIG  244
            EL+++FQIGF I+IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L++
Sbjct  127  ELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRLLD  186

Query  245  SLAQSFY  251
            +L   FY
Sbjct  187  GL---FY  190

601) fliP in NC_021149


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 94.9 bits (341),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 78/187 (42%), Positives = 124/187 (67%), Gaps = 13/187 (6%)

Query  73   RIIIVLGLLRTAIGTPAAPPNQVllglalfltlFIMSPVLDRTYQSAWLPFSRDEIG-FE  131
            +I +VL + R AIG   APPN  L G+AL  TLFIM+PV+     + ++    ++++ F 
Sbjct  9    KIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM--GDRVKKLPEHLDTFA  66

Query  132  QFLETGSQ---PFREFMLAQ-TRESDLALFARLARL--GEL-EGPEQVPLRVLMPAFVTS  184
                +G +   P+R FM  +   + +  L+    R+   E+ + + +  L +++PAFV S
Sbjct  67   AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFVLS  126

Query  185  ELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLIG  244
            EL+++FQIGF I+IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L++
Sbjct  127  ELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRLLD  186

Query  245  SLAQSFY  251
            +L   FY
Sbjct  187  GL---FY  190

602) fliP in NC_012560


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 94.9 bits (341),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 78/187 (42%), Positives = 124/187 (67%), Gaps = 13/187 (6%)

Query  73   RIIIVLGLLRTAIGTPAAPPNQVllglalfltlFIMSPVLDRTYQSAWLPFSRDEIG-FE  131
            +I +VL + R AIG   APPN  L G+AL  TLFIM+PV+     + ++    ++++ F 
Sbjct  9    KIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM--GDRVKKLPEHLDTFA  66

Query  132  QFLETGSQ---PFREFMLAQ-TRESDLALFARLARL--GEL-EGPEQVPLRVLMPAFVTS  184
                +G +   P+R FM  +   + +  L+    R+   E+ + + +  L +++PAFV S
Sbjct  67   AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFVLS  126

Query  185  ELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLIG  244
            EL+++FQIGF I+IPF++IDL+V+++L+ALGM MV+P TISLP+K++LFVLVDGW  L++
Sbjct  127  ELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRLLD  186

Query  245  SLAQSFY  251
            +L   FY
Sbjct  187  GL---FY  190

603) fliP in NC_004193


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 94.1 bits (338),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 76/181 (42%), Positives = 123/181 (68%), Gaps = 6/181 (3%)

Query  36   LILMTSFTRIIIVLSFVRTSLATQQMPPNQVLIGIALFMSFFIMAPTFTEVYE--EGLGP  93
            +I+ T+F +I +VL + R +++ QQ PPN  L GIAL  ++FIMAP F+E+ +    L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  94   LFNEEITLDEAYENASIPLKEFMAQHTRQKDLELFLNYTQADPPETIEDIP----LTTLV  149
             ++   +++ A  +   PL+ FM+++        +L+ TQ   P  + D +    L  +V
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  150  PAFAISELKTAFQMGFLIFIPFLIIDMAvasilmsmgmmmlppvmiSLPFKILLFVLVDG  209
            PAF +SEL+++FQ+GFLI+IPF++ID+ V++IL+++GM M++P+ ISLP+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  210  W  210
            W
Sbjct  181  W  181

604) fliP in NC_016112


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 94.1 bits (338),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 79/192 (42%), Positives = 131/192 (69%), Gaps = 15/192 (7%)

Query  64   TSFTRIMIVLGLLRQALGTAQAPSNQILLGLSLFLTFFIMAPVFDKVNRDAIQPYLEEKI  123
            T+F +I +VL + R+A+G  QAP+N  L G++L  T+FIMAPVF  +     +  L E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  124  DVLTAVENAS----VPFRQFMIRQTRESDLEMFL-----RISGHEEVESVDDVPFSVLLP  174
            D ++A+E+A+     P+R FM R+  ++D++  L     R+   E  +      + +++P
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNL-DPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  175  AYVTSELKTAFQIGFLIFLPFLVIDlvvasvlmsmgmmmlspmIISLPFKIMLFVMADGW  234
            A+V SEL+++FQIGFLI++PF+VIDL+V+++L+++GM M++PM ISLP+KI+LFV+ DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  235  SLIMEMLAASFY  246
            +    +L + FY
Sbjct  182  T---RLLDGLFY  190

605) B565_1109 in NC_015424


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 94.1 bits (338),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 133/192 (70%), Gaps = 15/192 (7%)

Query  72   TSFTRIIVVLGILRQAIGLQQSPSNQVLIGIALFMSFFIMSPVL----DRIND--EALQP  125
            T+F +I +VL I R+AIG+QQ+P+N  L GIAL  ++FIM+PV+    DR++   E L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  126  YLAETIQAKEALERAELPIHQFMLAQTRIKDLNTFMEIA-----NVQVEKPADVPLRVLI  180
            + A    +K+ +E    P++ FM  +        ++E +     +   +K++   L +++
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  181  PAFVTSELKTAFQIGFMLFLPFLVIDLVVasilmamgmmmlspmiVSLPFKLMLFVMVDG  240
            PAFV SEL+++FQIGF++++PF+VIDL+V++IL+A+GM M++PM +SLP+K++LFV+VDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  241  WNLILGSLANSF  252
            W  +L++L  S+
Sbjct  181  WTRLLDGLFYSY  192

606) fliP in NC_005085


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 93.9 bits (337),  Expect = 6e-21, Method: Compositional matrix adjust.
 Identities = 79/196 (41%), Positives = 139/196 (71%), Gaps = 13/196 (6%)

Query  62   MLMMTAFTRIVIVLSLLRQALGTTQSPPNQVIVGLALFLTLFVMGPTFDQVYAKAWVPFS  121
            M++ TAF +I +VL + R+A+G  Q+PPN  + G+AL  TLF+M+P F ++  +    ++
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV-KKLP  59

Query  122  DDKISFNQALDEGSK----PMKAFMLRQTREKDLAFFIEISQSPKPQSKEEVSMKT----  173
            ++  +F  A++ ++K    P+++FM R+      + ++E +Q   P+   + + +     
Sbjct  60   EHLDTFA-AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  174  LIPAFAVSELKTAfqigfmifipfmiiDLVVASILMAMGMMMVSPVTISLPFKMMLFVLV  233
            ++PAF +SEL+++FQIGF+I+IPF++IDL+V++IL+A+GM MV+P+TISLP+K++LFVLV
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  234  DGWTLLMGSLVQSFYT  249
            DGWT L+++L   FY+
Sbjct  179  DGWTRLLDGL---FYS  191

607) Achl_2976 in NC_011886


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 93.1 bits (334),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 82/190 (44%), Positives = 131/190 (69%), Gaps = 10/190 (5%)

Query  80   TSFTKIFVVLAMTRNALSLPSIPPNQVLAGLALFLSLFVMWPVLTEINTDAVQPYLNGNL  139
            T+F KI +VL +TRNA+++   PPN  L G+AL  +LF+M PV++E+     +  L  +L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  140  D-FNGAFSAG---AGPLQQFMLGH-TREEDIALMTRAARM-PN--PENPGAVPLQTLIPA  191
            D F +  SAG     PL+ FM  +   + +  L+  + RM P+  +++++   L  ++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  192  FMISELRAAFIIGFVIFIPFLVIDLVvsaalmsmgmmmlppvmISLPFKILLFILVDGWG  251
            F++SEL+A+F IGF+I+IPF+VIDL+VS  L+++GM M++P+ ISLP+KILLF+LVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  252  LVITSLIQSY  261
             ++ +L+ SY
Sbjct  183  RLLDGLFYSY  192

608) fliP in NC_006368


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 93.1 bits (334),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 78/186 (42%), Positives = 131/186 (71%), Gaps = 11/186 (5%)

Query  66   TSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERI  125
            T+F +I +VL I R+AIG+ Q+P N  L GIAL  T F+M+PVF+ + +   +  + E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  DFSLALSNAQK----PLRQFMLNQ-TRKNDLSLFEKFAHNVPKTLDEIP----MSVLIPA  176
            D   A+ +A K    PLR FM  +     +  L+E+  +  PK + + +    + +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  177  FITSELKTAFQIGFVLFLPFLIIDlvvssllmamgmmmlsplIISLPFKIMLFVMVDGWT  236
            F+ SEL+++FQIGF++++PF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFV+VDGWT
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  237  LVLGSL  242
             +L++L
Sbjct  183  RLLDGL  188

609) Sgly_0606 in NC_015172


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 93.1 bits (334),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 77/184 (42%), Positives = 124/184 (68%), Gaps = 6/184 (3%)

Query  68   TSFTRIIVVLSFVRNAMGTQQLPPNQVIIGLALILTFFVMAPTFSQVNTNAIK--PYIEN  125
            T+F +I +VL + RNA+G QQ PPN  + G+AL  T+F+MAP FS++     K    ++ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  126  QISREEALTRAEAPLREFMIKQTREKDLALFVGLSQIPQPKTYRDIPT----YVLVPSFV  181
              + E A  +   PLR FM ++      + ++  +Q   PK   D ++     ++VP+FV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  182  ISELKTAFQIGFAIFIPFMIIDMIVAstlmsmgmmmlppmmislpFKILLFVIVDGWYLI  241
            +SEL+++FQIGF I+IPF++ID+IV++ L+++GM M++PM ISLP+KILLFV+VDGW  +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  242  VQSL  245
            +++L
Sbjct  185  LDGL  188

610) hscR in NC_014366


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 92.8 bits (333),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 81/198 (41%), Positives = 141/198 (72%), Gaps = 10/198 (5%)

Query  26   VMVTAFTKlvvvlsllrnslglQQTPPNVVLNGLAIILSLYVMYPVLLQTQSLITSHLKE  85
            ++ TAF K+ +VL + RN++G+QQ+PPN+ L G+A+  +L++M PV+ +    +  ++K 
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSE----MGDRVKK  57

Query  86   TPEAKLTVDRLIEIFDVGK---KPLKDFLIRHSKESERHFFLESARQLLPEEDRNNIHED  142
             PE    +D +  +   GK    PL+ F+ R+     +  +LE+++++ P E  ++   D
Sbjct  58   LPE---HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD  114

Query  143  DFLVIVPAFTVSELSAAFQigfllflpfliidllVSNLLMALGIAMLSPTQVSLPFKLLL  202
            D+L++VPAF +SEL A+FQIGFL+++PF++IDL+VSN+L+ALG+ M++P  +SLP+K+LL
Sbjct  115  DLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILL  174

Query  203  FVFISGWTQLIHGLVLTY  220
            FV++ GWT+L++GL  +Y
Sbjct  175  FVLVDGWTRLLDGLFYSY  192

611) STHERM_c09260 in NC_014484


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 92.8 bits (333),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 79/195 (41%), Positives = 138/195 (71%), Gaps = 10/195 (5%)

Query  71   VLTTSFLRIALVLDFIRRALGLQQVPPTQVLMGISLFLTLFVMWPTFQEVYDDSFVPLSR  130
            ++ T+FL+IA+VL + R A+G+QQ PP   L GI+L  TLF+M P F E+ +D    L+ 
Sbjct  2    IICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPE  60

Query  131  --GEIGVEEAYGR-AVGPLRIFMYRQMQNDVEPIRLFMRMSGLPRPDTLADVPTH----I  183
              + ++  E+ G+  V PLR FM R+++ D++  +L+     + +P  +AD +++    +
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQT-HLLENTQRM-WPKEMADKASRDDLLL  118

Query  184  LIPAFILHELTVAFKigiilyipfiiiDMVVASTLMSMGMIMLPPVMISFPFKLLLFVLV  243
            ++PAF+L EL  +F+IG+++YIPFI+ID++V++ L+++GM M++P+ IS+P+K+LLFVLV
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  244  DGWTLITQQLLGSFV  258
            DGWT + + L+ S++
Sbjct  179  DGWTRLLDGLFYSYM  193

612) A11Q_610 in NC_020813


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 92.6 bits (332),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 83/195 (43%), Positives = 136/195 (70%), Gaps = 12/195 (6%)

Query  61   MIMMTGFTRILIVLSFLRQAMGVQQLPPNQLLVGLSLFLTFFVMAPAFNEINQ--KAVQP  118
            MI+ T+F +I +VL + R+A+GVQQ PPN  L G++L  T+F+MAP F+E+ +  K +  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  119  YLTNSISQDQAMENALVPLRRFMFSQTRDQDLALFVKLGQIEQ---PKTRADVPT----V  171
             L    + + A  + + PLR FM   TR+ D  +   L +  Q   PK  AD ++    +
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  172  VLVPAFIVSELKTAFMigfiiflpfliidilAASVLMAMGMMMVPPIVISLPFKIMLFVL  231
            ++VPAF++SEL+++F IGF+I++PF++ID++ +++L+A+GM MV+P+ ISLP+KI+LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  232  VDGWTLLIGSMMKSF  246
            VDGWT L++++  S+
Sbjct  178  VDGWTRLLDGLFYSY  192

613) Acav_4282 in NC_015138


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 92.6 bits (332),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 76/185 (42%), Positives = 126/185 (69%), Gaps = 8/185 (4%)

Query  76   TGFTRIVIVLSLIRQAIGTQSAPPNQVIIGLSLFLTFFVMGPTFDRVYADAYLPYSNNTI  135
            T+F +I +VL + R+AIG Q APPN  + G++L  T+F+M+P F  + +D     +++  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  136  TF---EQAVERAEAPMRSFMLKQ-TRQSDFALFARLAKLPSGATAETAPMRVL---VPAF  188
            TF   E A  +   P+R+FM ++   + +  L+    ++ +   A+ A+   L   VPAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  189  VTSELKSAFQIGFMIFIPFLVIDmvvssilmslgmmmlspvlvALPFKLMLFVLADGWNL  248
            V SEL+++FQIGF+I+IPF+VID++VS+IL++LGM M++P+ ++LP+K++LFVL DGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  249  LLGSL  253
            LL++L
Sbjct  184  LLDGL  188

614) fliP in NC_004757


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 92.6 bits (332),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 78/194 (41%), Positives = 135/194 (70%), Gaps = 19/194 (9%)

Query  85   SSFTRIIIVLSLLRQAMGTQSSPPNQVLLGLALFLSFFIMSPVIDKVYTEAYLPFSEDKI  144
            ++F +I +VL + R+A+G Q +PPN  L G+AL  ++FIM+PV+  +  +    ++E+ +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEH-L  62

Query  145  SIVEAMEKAG----DPLKSFMLRQTREADIALFARIAENGEIESPDQVPMK-------IL  193
                AME AG    +PL++FM   TR+ D  + +++ EN +   P +++ K       ++
Sbjct  63   DTFAAMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  194  VPAYITSELKTAFQIGFVVFIPFLIIDMVVASTLmamgmmmlspmiislpFKLMLFVLVD  253
            VPA++ SEL+++FQIGF+++IPF++ID++V++ L+A+GM M++PM ISLP+K++LFVLVD
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  254  GWNLLIGSLTQSFY  267
            GW  L+++L   FY
Sbjct  180  GWTRLLDGL---FY  190

615) spaP in NC_008800


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 92.0 bits (330),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 83/195 (43%), Positives = 145/195 (75%), Gaps = 10/195 (5%)

Query  29   TCYLKISIVLIMVRNAMGVQQVPsglalngialllslFVMMPVIQDVNHYMRT--EKVD-  85
            T +LKI++VL++ RNA+GVQQ P+ +AL GIAL  +LF+M PV+ ++ + ++   E +D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  86   FSNVDSVDKFIDGGLGSYTAYLKKYSDPEL-LNFFESLQQGRSEEESMAEADTREPALFS  144
            F+ ++S +K +   L    +++ +  DP++  +++E+ Q+ ++ E  MA+  +R+  L+ 
Sbjct  65   FAAMESAGKHVVEPL---RTFMTRNLDPDIQTHLLENTQRMWPKE--MADKASRD-DLLL  118

Query  145  LLPAYALSEIKSAFEIGFYIYLPFVVidliissillalgmmmmsPVTISVPVKLILFVAI  204
            ++PA+ LSE++++F+IGF IY+PF+VIDLI+S+ILLALGM M++P+TIS+P+K++LFV +
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  205  DGWALISKGLIMQYM  219
            DGW+ +  GL+  YM
Sbjct  179  DGWTRLLDGLFYSYM  193

616) fliP in NC_021286


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 91.8 bits (329),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 77/187 (42%), Positives = 131/187 (71%), Gaps = 12/187 (6%)

Query  65   TSFTRIIIVLAILRQAIGLQQSPSNQVLLGIALFLSFFIMTPVLNEIND--KALQPYLNE  122
            T+F +I +VL I R+AIG+QQ+P+N  L GIAL  ++FIM+PV++E+ D  K L   L +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL-D  63

Query  123  EIQSMEAVDR-AKAPIKAFML------AQTRLTDLETFVEISGTEGVQEPEDVPMSVLIP  175
             + +ME+ ++    P+++FM        QT+L  LE    +   E  + +    + +++P
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHL--LENTQRMWPKEMADKASRDDLLLVVP  121

Query  176  SFITSELKTAFQIGFMLFIPFLIIDlvvasvlmamgmmmlspmIVSLPFKLMLFVLVDGW  235
            +F+ SEL+++FQIGF+++IPF++IDL+V+++L+A+GM M++PM +SLP+K++LFVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  236  SLTMSTL  242
            +  +  L
Sbjct  182  TRLLDGL  188

617) fliP in NC_006512


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 91.8 bits (329),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 77/187 (42%), Positives = 131/187 (71%), Gaps = 12/187 (6%)

Query  65   TSFTRIIIVLAILRQAIGLQQSPSNQVLLGIALFLSFFIMTPVLNEIND--KALQPYLNE  122
            T+F +I +VL I R+AIG+QQ+P+N  L GIAL  ++FIM+PV++E+ D  K L   L +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHL-D  63

Query  123  EIQSMEAVDR-AKAPIKAFML------AQTRLTDLETFVEISGTEGVQEPEDVPMSVLIP  175
             + +ME+ ++    P+++FM        QT+L  LE    +   E  + +    + +++P
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHL--LENTQRMWPKEMADKASRDDLLLVVP  121

Query  176  SFITSELKTAFQIGFMLFIPFLIIDlvvasvlmamgmmmlspmIVSLPFKLMLFVLVDGW  235
            +F+ SEL+++FQIGF+++IPF++IDL+V+++L+A+GM M++PM +SLP+K++LFVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  236  SLTMSTL  242
            +  +  L
Sbjct  182  TRLLDGL  188

618) GYMC10_4175 in NC_013406


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 91.8 bits (329),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 74/181 (41%), Positives = 118/181 (66%), Gaps = 6/181 (3%)

Query  63   LVLMTSFTRIVIVLGFVRTSLGTQQTPPNQVLIGLALFLTLFVMAPTLSSMNEVA--LQP  120
            +++ T+F +I +VL + R ++G QQ+PPN  L G+AL  TLF+MAP +S M +    L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  121  YLKGEITQAEALDKAQDPMKKFMFAHTREKDLLLFMNYT----GAEKPESYEDIPLTVLV  176
             L    +   A     +P++ FM  +        +++ T      E ++      L ++V
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  177  PAFAISELKTGFQMGFMIFIPFLVIDIvvasvlmamgmmmlppvmISLPFKILLFVLVDG  236
            PAF +SEL++GFQ+GF+I+IPF+VID++V+++L+A+GM M++P+ ISLP+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  237  W  237
            W
Sbjct  181  W  181

619) fliP in NC_007954


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 91.8 bits (329),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 75/186 (41%), Positives = 127/186 (69%), Gaps = 10/186 (5%)

Query  64   TSFTRIIVVLSILRQALGLQQTPSNQVLIGISLFMTFFIMSPVFDKIYTEAVEPYINETM  123
            T+F +I +VL I R+A+G+QQ+P+N  L GI+L  T+FIM+PVF  +  + V    ++  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  124  TLQQSYEVGKL---PIKSFMLSQLRLTDLQTFVEISGYKG-----ITSPEEAPMSVIIPA  175
            T+      GK    P+++FM  +L   D+QT +  +  +         +    + +++PA
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLD-PDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  176  FITSELKTAFQIGFMLFIPFLVLDLVVasilmamgmmmlspmiVSLPFKIMLFVLVDGWS  235
            F+ SEL+++FQIGF+++IPF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  236  LVMGTL  241
             +++ L
Sbjct  183  RLLDGL  188

620) fliP in NC_008340


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 91.2 bits (327),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 81/186 (44%), Positives = 128/186 (69%), Gaps = 12/186 (6%)

Query  68   SFTRIIIVLAILRQAMGTASTPSNQVLIGLALFLTLFVMAPVFQEVHDTALAPYLAEEMA  127
            +F +I +VL I R+A+G   +P+N  L G+AL  TLF+MAPVF E+ D      L+E++ 
Sbjct  6    AFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHLD  63

Query  128  PDEALEAAS----EPMRGFMIAQTRESDLGLFL-----RIAGYDQVDSPDDVPFTVLVPA  178
               A+E+A+    EP+R FM ++  ++D+   L     R+   +  D +    + ++VPA
Sbjct  64   TFAAMESAGKHVVEPLRTFM-TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  179  FMTSELKTAFTIGFIIYLPFLVIDLVVAstlmsmgmlmlspmiislpFKILLFVLVDGWS  238
            F+ SEL+++F IGF+IY+PF+VIDL+V++ L+++GM M++PM ISLP+KILLFVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  239  LLMGTL  244
             L++ L
Sbjct  183  RLLDGL  188

621) fliP in NC_008570


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 91.2 bits (327),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 82/194 (43%), Positives = 138/194 (72%), Gaps = 19/194 (9%)

Query  73   TSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIMSPVL----DRINN--EALQP  126
            T+F +I +VL I R+AIG+QQ+P+N  L GIAL  ++FIM+PV+    DR+++  E L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  127  YLAETIQAKEALEKAELPIHQFMLAQTRIKDLNTFMEIANVQ-------VDKPADVPLRV  179
            + A    +K+ +E    P++ FM ++    D++T + + N Q        DK++   L +
Sbjct  65   FAAMESAGKHVVE----PLRTFM-TRNLDPDIQTHL-LENTQRMWPKEMADKASRDDLLL  118

Query  180  LIPAFVTSELKTAFQIGFMLFLPFLVIDLVVAsilmamgmmmlspmlvslPFKLMLFVMV  239
            ++PAFV SEL+++FQIGF++++PF+VIDL+V++IL+A+GM M++PM +SLP+K++LFV+V
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  240  DGWNLILGSLANSF  253
            DGW  +L++L  S+
Sbjct  179  DGWTRLLDGLFYSY  192

622) fliP in NC_021290


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 91.2 bits (327),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 82/194 (43%), Positives = 138/194 (72%), Gaps = 19/194 (9%)

Query  73   TSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIMSPVL----DRINN--EALQP  126
            T+F +I +VL I R+AIG+QQ+P+N  L GIAL  ++FIM+PV+    DR+++  E L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  127  YLAETIQAKEALEKAELPIHQFMLAQTRIKDLNTFMEIANVQ-------VDKPADVPLRV  179
            + A    +K+ +E    P++ FM ++    D++T + + N Q        DK++   L +
Sbjct  65   FAAMESAGKHVVE----PLRTFM-TRNLDPDIQTHL-LENTQRMWPKEMADKASRDDLLL  118

Query  180  LIPAFVTSELKTAFQIGFMLFLPFLVIDLVVAsilmamgmmmlspmlvslPFKLMLFVMV  239
            ++PAFV SEL+++FQIGF++++PF+VIDL+V++IL+A+GM M++PM +SLP+K++LFV+V
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  240  DGWNLILGSLANSF  253
            DGW  +L++L  S+
Sbjct  179  DGWTRLLDGLFYSY  192

623) Celf_0690 in NC_015514


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 91.0 bits (326),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 82/195 (43%), Positives = 128/195 (66%), Gaps = 12/195 (6%)

Query  51   ILMTTSFTKIFVVLSFTRNALGLQGVPPNQVLAGLALFLSLFVMAPVVSDINS--VGVQP  108
            +++ T+F KI +VL +TRNA+G+Q  PPN  L G+AL  +LF+MAPV S++      +  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  109  YLDGSLTFSQAVDVGSGPLREFMLGQTREQDLALLTRAADQENPASPEDVPFAT------  162
             LD   +   A      PLR FM   TR+ D  + T+  ++ +   P +++  +      
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  163  -LVPAFLLSELRSAFIMGFVIFVPFLVIDlvvsaslmsmgmmmlppvmISLPFKILLFVL  221
             +VPAF+LSEL+++F +GF+I++PF+VIDL+VS  L+++GM M++P+ ISLP+KILLFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  222  VDGWGLVVTSLVGSY  236
            VDGW  ++ +L  SY
Sbjct  178  VDGWTRLLDGLFYSY  192

624) fliP in NC_018866


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 90.7 bits (325),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 74/181 (41%), Positives = 124/181 (69%), Gaps = 6/181 (3%)

Query  30   LVLMTSFTRIVVVLSFVRNALGTQTLPPTQVIIGLSLFLTFFVMMPTFNEINT--NALQP  87
            +++ T+F +I +VL + RNA+G Q  PP   + G++L  T+F+M P F+E+    + L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  88   YLQSQITKEEALDKAQQPLRTFMFKQTREKDLALFVNMAKIEQPKTYGDIPT----YVLI  143
             L++  + E A     +PLRTFM ++      + +++ ++   PK  +D ++     +++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  144  PAFVISELKTAFQMGFAIFIPFIIIDMVVsstlmsmgmmmlppmmislpFKILLFVLVDG  203
            PAFV+SEL+++FQ+GF I+IPFI+ID++VS+ L+++GM M++PM ISLP+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  204  W  204
            W
Sbjct  181  W  181

625) fliP in NC_018867


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 90.7 bits (325),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 74/181 (41%), Positives = 124/181 (69%), Gaps = 6/181 (3%)

Query  30   LVLMTSFTRIVVVLSFVRNALGTQTLPPTQVIIGLSLFLTFFVMMPTFNEINT--NALQP  87
            +++ T+F +I +VL + RNA+G Q  PP   + G++L  T+F+M P F+E+    + L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  88   YLQSQITKEEALDKAQQPLRTFMFKQTREKDLALFVNMAKIEQPKTYGDIPT----YVLI  143
             L++  + E A     +PLRTFM ++      + +++ ++   PK  +D ++     +++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  144  PAFVISELKTAFQMGFAIFIPFIIIDMVVsstlmsmgmmmlppmmislpFKILLFVLVDG  203
            PAFV+SEL+++FQ+GF I+IPFI+ID++VS+ L+++GM M++PM ISLP+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  204  W  204
            W
Sbjct  181  W  181

626) fliP in NC_009348


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 90.5 bits (324),  Expect = 6e-20, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 133/192 (70%), Gaps = 15/192 (7%)

Query  63   TSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIMSPVL----DRIND--EALQP  116
            T+F +I +VL I R+AIG+QQ+P+N  L GIAL  ++FIM+PV+    DR++   E L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  117  YLAETIQAREALEKAELPIHQFMLSQTRIKDLNTFMEIAD-----VQVDKPAEVPLRVLI  171
            + A    +++ +E    P++ FM  +        ++E ++        DK++   L +++
Sbjct  65   FAAMESAGKHVVE----PLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAFVTSELKTAFQIGFMLFLPFLVIDLVVAsilmamgmmmlspmlvslPFKLMLFVMVDG  231
            PAFV SEL+++FQIGF++++PF+VIDL+V++IL+A+GM M++PM +SLP+K++LFV+VDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WNLILGSLANSF  243
            W  +L++L  S+
Sbjct  181  WTRLLDGLFYSY  192

627) Desor_4879 in NC_016584


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 90.5 bits (324),  Expect = 7e-20, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 129/191 (68%), Gaps = 12/191 (6%)

Query  74   TSFTRIVIVLSFVRNALGTQQLPPNQVLVGLALFLSFFVMAPTWNEINTNAVQPYIKHQI  133
            T+F +I +VL + RNA+G QQ PPN  L G+AL  ++F+MAP  +E+     +  + +++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  134  TQSEALDRAE----EPLRMFMFKQ-TREKDLQLFVGLSKM----EQPKTYRDVPTYVLIP  184
                A++ A     EPLR FM ++   + + +L+    +M       K+ RD    +++P
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD-DLLLVVP  121

Query  185  AFVISELKTAFQMGFAIFVPFIVIDMIVSSTlmsigmmmlppmmislpFKLLLFVLVDGW  244
            AFV+SEL+++FQ+GF I++PFIVID+IVS+ L+++GM M++PM ISLP+K+LLFVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  245  HLVVESLVTSF  255
              ++++L  S+
Sbjct  182  TRLLDGLFYSY  192

628) Fbal_1045 in NC_014541


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 89.7 bits (321),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 82/193 (43%), Positives = 139/193 (73%), Gaps = 16/193 (8%)

Query  65   TSFTRIIVVLAILRQALGLQQTPSNQVLLGMALFLSLFIMTPVLDRVYEDALVPYMGEQI  124
            T+F +I +VL I R+A+G+QQ+P+N  L G+AL  +LFIM+PV+  +  +  V  + E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM--GDRVKKLPEHL  62

Query  125  GALEAMERAK----APVKDFMLSQTRITDINT-FVEISGR------TDIASVDEVPMTVL  173
            +++ AME A      P++ FM ++    DI+T ++E + R      +D AS D+  + ++
Sbjct  63   DTFAAMESAGKHVVEPLRTFM-TRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLV  119

Query  174  IPAFVTSELKTAFQIGFMLFVPFLVIDlvvasvlmamgmmmlspmIVSLPFKIMLFVLVD  233
            +PAFV SEL+++FQIGF++++PF+VIDL+V+++L+A+GM M++PM +SLP+KI+LFVLVD
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  234  GWNLVMGTLATSF  246
            GW  +++ L  S+
Sbjct  180  GWTRLLDGLFYSY  192

629) fliP in NC_013949


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 89.7 bits (321),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 74/184 (41%), Positives = 127/184 (70%), Gaps = 6/184 (3%)

Query  65   TSFTRLVIVFSFLRTALGTQQSPPTQILVSLAMVLTFFIMEPVVRESYQ--KAIVPYLDA  122
            T+F ++ +V+ + R A+G QQ+PP   L ++A+  T+FIM PV  E  +  K +   LD+
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  123  KISYETAFDRGVQPFKDFMLKN-TREKDLALFYRIRKL---ENPKTSADVSLTTLIPAFM  178
              + E+A  + V+P++ FM +N   + +  L+   +++   E +  ++   L  ++PAF+
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  179  ISELKTAFQIGFLLYLPFLVIDMVvssilmamgmmmlppvmiSLPFKILIFVLVDGFNLL  238
            +SEL+++FQIGFL+Y+PF+VID++VS+IL+A+GM M++P+ ISLP+KIL+FVLVDG   L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  239  IGNL  242
            ++ L
Sbjct  185  LDGL  188

630) NAL212_0476 in NC_015222


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 89.4 bits (320),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 85/195 (44%), Positives = 135/195 (70%), Gaps = 19/195 (9%)

Query  65   SSFTRIIIVLSLLRMALGTQSSPPNQVLLGLALFLTFFIMSPVI----DRVYSEAYLPFS  120
            ++F +I +VL + R A+G Q +PPN  L G+AL  T+FIM+PV+    DRV     LP  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK---LPEH  61

Query  121  EDKISIMEAAEKASV-PLKSFMLHQ-TRETDLALFVQI-----SESEELESRDQVPLKIL  173
             D ++ ME+A K  V PL++FM ++   + +  L+ +       E  +  SRD+  L ++
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLV  119

Query  174  VPAYITSELKTAFQIGFVIFIPFLIIDlvvssvlmamgmmmlspmIISLPFKLMLFVLVD  233
            VPA++ SEL+++FQIGF+I+IPF++IDL+VS++L+A+GM M++PM ISLP+K++LFVLVD
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  234  GWHLIIGSLTQSFYT  248
            GW  ++++L   FY+
Sbjct  180  GWTRLLDGL---FYS  191

631) Galf_1059 in NC_014394


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 89.4 bits (320),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 77/190 (41%), Positives = 127/190 (67%), Gaps = 9/190 (4%)

Query  66   TSFTRIIIVLSMLRSALGTQASPPNQVLIGLSLFLTFFIMSPVFDKIYTDAY-LPYSENR  124
            T+F +I +VL + R+A+G Q +PPN  L G++L  T+FIM+PVF  +      LP   + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  125  IELQEAVEKGVI-PLKTFMLRQ-TRQADLALFVKISN---SDELQSAEEVPMRLLVPAYV  179
            +   E+  K V+ PL+TFM R+   + +  L+ +       +  + A    + L+VPA+V
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  180  TSELKTAFQIGFVVFIPFLIIDMVVAsilmsmgmmmlspsiislpFKIMLFVLADGWNLL  239
             SEL+++FQIGF+++IPF++ID++V++IL+++GM M++P  ISLP+KI+LFVL DGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  240  IGSLAQSFYT  249
            +++L   FY+
Sbjct  185  LDGL---FYS  191

632) Desaci_3816 in NC_018068


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 88.9 bits (318),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 130/191 (69%), Gaps = 12/191 (6%)

Query  73   TSFTRIVIVLSFVRNALGTQQLPPNQVLVGLALFLSFFVMAPTWNQINTNAIQPYMKNQI  132
            T+F +I +VL + RNA+G QQ PPN  L G+AL  ++F+MAP  +++     +  + +++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  133  TQTEALTKAE----EPLRDFMFKQ-TREKDLELFVGLAKMERPKTYRDIPT----YVLIP  183
                A+  A     EPLR FM ++   + + +L+    +M +PK   D ++     +++P
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  184  AFVISELKTAFQMGFAIFIPFMVIDMIVSSTlmsigmmmlppmmislpFKILLFVLVDGW  243
            AFV+SEL+++FQ+GF I+IPF+VID+IVS+ L+++GM M++PM ISLP+KILLFVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  244  HLVVQSLVTSF  254
              ++++L  S+
Sbjct  182  TRLLDGLFYSY  192

633) fliP in NC_016745


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 87.6 bits (313),  Expect = 5e-19, Method: Compositional matrix adjust.
 Identities = 83/194 (43%), Positives = 136/194 (71%), Gaps = 19/194 (9%)

Query  64   TSFTRIIVVLSILRQALGLQQSPSNQVLIGISLFLSFFIMAPVL----DRVN--AEALQP  117
            T+F +I +VL I R+A+G+QQ+P+N  L GI+L  ++FIMAPV+    DRV+  +E L+ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  118  YLAEEIGSREALARAELPIRDFMLAQTRVKDLDTFLNIANVQ-------VDSEAEVPLRV  170
            + A E ++++ +     P+R FM ++    D++T L + N Q        D  +   L +
Sbjct  65   FAAMESAGKHVVE----PLRTFM-TRNLDPDIQTHL-LENTQRMWPKEMADKASRDDLLL  118

Query  171  LIPAFVTSELKTAFQIGFMLFLPFLVIDLVVasilmamgmmmlspmlislpFKLMLFVLV  230
            ++PAFV SEL+++FQIGF++++PF+VIDL+V++IL+A+GM M++PM ISLP+K++LFVLV
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  231  DGWNLIMGTLATSF  244
            DGW  +++ L  S+
Sbjct  179  DGWTRLLDGLFYSY  192

634) fliP in NC_022357


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 87.3 bits (312),  Expect = 5e-19, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 131/192 (69%), Gaps = 13/192 (6%)

Query  63   TAFTRIIIVLSLLRMAIGTMQAPPNQILIGLSLFLTFFVMAPVFDKIYAEAYQPYAEQKI  122
            TAF +I +VL + R AIG  QAPPN  L G++L  T+F+MAPVF  + ++  +  +E+  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  123  DFNQALEKGA----APLKAFMLRQTRQD-DLALFVKLSNSAPLPGPEAVPMKIL---VPA  174
             F  A+E ++     PL++FM R+   D +  L+ +     P   ++  +   L   VPA
Sbjct  64   TFA-AMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  175  YVISELKTAFQIGFVVFLPFLIIDmvvasvlmsmgmmmlspmvisLPFKLMLFVLVDGWN  234
            +V+SEL+++FQIGF++++PF++ID++V+++L+++GM M++PM ISLP+K++LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  235  LLIGSLVQSFYT  246
             L+++L   FY+
Sbjct  183  RLLDGL---FYS  191

635) Thimo_0280 in NC_019940


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 86.8 bits (310),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 77/187 (42%), Positives = 127/187 (68%), Gaps = 14/187 (7%)

Query  67   SFTRIIIVLAILRQALGTMQTPPNQVLIGLALFLTLFVMSPVLQRVNEDAVQPYLKEELP  126
            +F +I +VL I R+A+G  Q+PPN  L G+AL  TLF+M+PV+  + +   +  L E+L 
Sbjct  6    AFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHLD  63

Query  127  A----ERAIEQASVSLRKFML----PQIREQDLALFADL--ADIGDLQSPDAVPFSLLVP  176
            +    E A  +   +LR FM     P+I+ + L     +   +++D  S D +   L+VP
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDL--LLVVP  121

Query  177  AFLTSELKTAFQIGFLVFLPFLVIDIVVAAVlmsmgmmmlspmiislpFKLMLFVLIDGW  236
            AF+ SEL+++FQIGFL+++PF+VID++V+ +L+++GM M++PM ISLP+K++LFVL+DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  237  TLIIGTL  243
            T +++ L
Sbjct  182  TRLLDGL  188

636) Fbal_2331 in NC_014541


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 86.5 bits (309),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 78/185 (43%), Positives = 131/185 (71%), Gaps = 8/185 (4%)

Query  59   TSFTRIIVVLAVLRQALGLQQSPPNKLLIGIALVLTLFIMRPVWTEIHEQA-FLPYDNGE  117
            T+F +I +VL + R+A+G+QQ+PPN  L GIAL  TLFIM PV +E+ ++   LP + + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  118  LTLKQAVAVAEV-PLRTFMLGQTRETDLEQMLKIAGE---STQLSAEEVPFSVLM--PAF  171
            ++  ++ +   V PLRTFM  +  + D++  L    +   + +++       +L+  PAF
Sbjct  65   FAAMESAGKHVVEPLRTFM-TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  172  VLSELKTAFQIGFLLFIPFLVIDlvvasvlmsmgmmmlspliislpFKLMVFVLVDGWSM  231
            VLSEL+++FQIGFL++IPF+VIDL+V+++L+++GM M++P+ ISLP+K+++FVLVDGW+ 
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  232  TVGTL  236
             ++ L
Sbjct  184  LLDGL  188

637) fliP in NC_018870


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 86.5 bits (309),  Expect = 9e-19, Method: Compositional matrix adjust.
 Identities = 77/188 (41%), Positives = 125/188 (67%), Gaps = 6/188 (3%)

Query  78   TSFTRIIVVFSFLRSALATQQMPPNQVLIGIALFLTFFIMAPTWQAVNR--DALQPFLRG  135
            T+F +I +V+ + R+A++ QQ PPN  L GIAL  T+FIMAP    +      L   L  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  136  EIDQEVAFERGMEPIRTFMFKQTREKDLALFVSLAKIPRPRTYEDIPN----YVLIPAFA  191
                E A  + +EP+RTFM ++      + ++  ++  +P+   D ++     +++PAF 
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  192  ISELKTAFQIGFMIYIPFLVIDMIVAstlmsmgmlmlppmmislpFKILLFIMVDGWHLL  251
            +SEL+++FQIGF+IYIPF+VID+IV++ L+++GM M++PM ISLP+KILLF++VDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  252  VRSLILSF  259
            + +L+ S+
Sbjct  185  LDGLFYSY  192

638) swp_5086 in NC_011566


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 86.3 bits (308),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 81/192 (43%), Positives = 134/192 (70%), Gaps = 14/192 (7%)

Query  60   TSFTRIIVVLAILRQALGLQQSPPNKVLIGIALVMTIFIMRPV----GQAIYDEAFLPYD  115
            T+F +I +VL I R+A+G+QQ+PPN  L GIAL  T+FIM PV    G+ +     LP +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK---LPEH  61

Query  116  LGQIELTEAVVKAEV-PLRKFMLAQTRETDLE-QMLKIADE--PTTLTADEIP--FFVLM  169
            L+ +   E+  K  V PLR FM ++  + D++ ++L  ++   P  ++       +++++
Sbjct  62   LDTFAAMESAGKHVVEPLRTFM-TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  170  PAFVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlspliislpFKLMVFVLVDG  229
            PAFVLSEL+++FQIGFL+++PF+VIDL+V+++L+++GM M++P+ ISLP+K+++FVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  230  WSMTVSTLVASY  241
            W+  +  L  SY
Sbjct  181  WTRLLDGLFYSY  192

639) Q7A_2938 in NC_017857


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 86.3 bits (308),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 79/189 (42%), Positives = 132/189 (70%), Gaps = 11/189 (5%)

Query  63   SFTRIIIVLAILRQAMGVQSTPSNQIMIGLALFLTFFIMSPVFSTAYE--NGVQPYMDGD  120
            +F +I +VL I R+A+GVQ +P+N  + G+AL  T+FIM+PVFS   +  + +   +D  
Sbjct  6    AFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDTF  65

Query  121  IEATAAIEQVSQPFREFMLAQTRESDIA--LFAEIGGYSAIESPDDVP---FSLLLPAFV  175
                +A  +V +P+R FM ++  ++DI   L+ +     + E +D  +   + L++PAFV
Sbjct  66   AAMESAGKHVVEPLRTFM-TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  176  TSELKTAFQIGFLIFVPFLIIDlvvasvlmamgmmmlspmlislpFKLMLFVLIDGWALL  235
             SEL+++FQIGFLI++PF++IDL+V+++L+A+GM M++PM ISLP+K++LFVL+DGW+ L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  236  MGTLASSFY  244
            ++ L   FY
Sbjct  185  LDGL---FY  190

640) Theco_2089 in NC_019897


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 86.3 bits (308),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 76/183 (42%), Positives = 125/183 (69%), Gaps = 10/183 (5%)

Query  63   LVLMTSFTRIVVVLGFVRMSLGTQTSPPNQVIIGLALFLTLFIMAPTLSEVNSTALQPYL  122
            +++ T+F +I +VL + R ++G Q +PPN  + G+AL  TLFIMAP +SE+     +  L
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--L  58

Query  123  RGEMTQTEALEAAA----VPMKEFMAKHTREKDLLLFMRYAQMERPASVEDIP----LTV  174
              ++    A+E+A+     P++ FM+++        ++  +Q  +P  + D +    L +
Sbjct  59   PEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  175  LVPAFAISELKTAFQMGFMIFIPFLIIDMIVsstlmamgmmmlppmmislpFKILLFVLV  234
            +VPAF +SEL+++FQ+GF+I+IPF++ID+IVS+ L+A+GM M++PM ISLP+KILLFVLV
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  235  DGW  237
            DGW
Sbjct  179  DGW  181

641) MDS_4752 in NC_015410


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 86.0 bits (307),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 80/188 (43%), Positives = 130/188 (70%), Gaps = 8/188 (4%)

Query  64   MMTC--FTRFIIVLAILRQAIGLQQSPPNPVLIGIALCLTLLVMRPVWQEM------YTE  115
            M+ C  F ++ +VL I R+AIG+QQ+PPN  L GIAL  TL++M PV  EM        E
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  116  AYVPFEADQISLEQGLGEGKRIISQFMLAQTSKNSLETLVALADEEMPDDLAQLDFSLLL  175
                F A + +  + +   + ++++ + ++   + LE    +   EM+D  ++ D+ L++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  176  PAFVLSELKTAFQLGFMIFVPFLVIDlvvasvlmamgmmmlspmmislpFKLLVFVLVDG  235
            PAFVLSEL+++FQ+GF+I++PF+VIDL+V+++L+A+GM M++PM ISLP+K+L+FVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WTLLVGTL  243
            WT L++ L
Sbjct  181  WTRLLDGL  188

642) fliP in NC_008789


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 86.0 bits (307),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 76/185 (42%), Positives = 123/185 (67%), Gaps = 10/185 (5%)

Query  64   AFTRIIVVLAILRQALGTASTPSNQVLIGLALFLTLFVMMPVFDEINE--TALQPYMaee  121
            AF +I +VL I R+A+G   +P+N  L G+AL  TLF+M PVF E+ +    L   +   
Sbjct  6    AFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDTF  65

Query  122  mgaeealeqaSEPMREFMIRQTREDDIALFLRIA------DYGEVDSPDDVPMSVLIPAF  175
             + E A  +  EP+R FM R+   D  + +L  +      + ++  S DD  + +++PAF
Sbjct  66   AAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVVPAF  123

Query  176  MTSELKTAFIIGFVLYLPFLVIDLVVAstlmsmgmlmlspmiislpFKIMLFVLVDGWSL  235
            + SEL+++F IGF++Y+PF+VIDL+V++ L+++GM M++PM ISLP+KI+LFVLVDGW+ 
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  236  IMGTL  240
            +++ L
Sbjct  184  LLDGL  188

643) fliP in NC_009438


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 85.5 bits (305),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 82/188 (44%), Positives = 134/188 (72%), Gaps = 13/188 (6%)

Query  61   TSFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPV----GDKIYKEAYLPYD  116
            T+F +I +VL I R+A+G+QQ+PPN  L GIAL  T+FIM PV    GD++ K   LP +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK---LPEH  61

Query  117  QGKIELMEAISIAKV-PLTRFMLAQTRETDLE-QMLKIANE--PTHM-KTAEEVPFFVLM  171
             + +  ME+ +   V PL  FM ++  + D++ ++L  ++   P +M   A    +++++
Sbjct  62   LDTFAAMESAGKHVVEPLRTFM-TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAFVLSELKTAFQIGFLIFLPFLVIDlvvasvlmsmgmmmlspliislpFKLMIFVLVDG  231
            PAFVLSEL+++FQIGFLI++PF+VIDL+V+++L+++GM M++P+ ISLP+K+++FVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WAMTVSTL  239
            W+  +  L
Sbjct  181  WTRLLDGL  188

644) fliP in NC_008750


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 85.5 bits (305),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 82/188 (44%), Positives = 134/188 (72%), Gaps = 13/188 (6%)

Query  61   TSFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPV----GDKIYKEAYLPYD  116
            T+F +I +VL I R+A+G+QQ+PPN  L GIAL  T+FIM PV    GD++ K   LP +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK---LPEH  61

Query  117  QGKIELMEAISIAKV-PLTRFMLAQTRETDLE-QMLKIANE--PTHM-KTAEEVPFFVLM  171
             + +  ME+ +   V PL  FM ++  + D++ ++L  ++   P +M   A    +++++
Sbjct  62   LDTFAAMESAGKHVVEPLRTFM-TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAFVLSELKTAFQIGFLIFLPFLVIDlvvasvlmsmgmmmlspliislpFKLMIFVLVDG  231
            PAFVLSEL+++FQIGFLI++PF+VIDL+V+++L+++GM M++P+ ISLP+K+++FVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WAMTVSTL  239
            W+  +  L
Sbjct  181  WTRLLDGL  188

645) fliP in NC_014125


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 85.5 bits (305),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 133/190 (70%), Gaps = 11/190 (5%)

Query  66   TSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERI  125
            T+F +I +VL I R+AIG+ Q+P N  L GIAL  T F+M+PVF+ + +   +  + E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  DFSLALSNAQK----PLRQFMLNQ-TRKNDLSLFEKFAHNVPKSLDEIP----MSVLIPA  176
            D   A+ +A K    PLR FM  +     +  L+E+  +  PK + + +    + +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  177  FITSELKTAfqigfilflpfliidlVVSSVLMAMGMMMLSPLIISLPFKIMLFVMVDGWT  236
            F+ SEL+++FQIGF++++PF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFV+VDGWT
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  237  LVLGSLASSF  246
             +L++L  S+
Sbjct  183  RLLDGLFYSY  192

646) lp12_1727 in NC_016811


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 85.5 bits (305),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 133/190 (70%), Gaps = 11/190 (5%)

Query  66   TSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERI  125
            T+F +I +VL I R+AIG+ Q+P N  L GIAL  T F+M+PVF+ + +   +  + E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  DFSLALSNAQK----PLRQFMLNQ-TRKNDLSLFEKFAHNVPKSLDEIP----MSVLIPA  176
            D   A+ +A K    PLR FM  +     +  L+E+  +  PK + + +    + +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  177  FITSELKTAfqigfilflpfliidlVVSSVLMAMGMMMLSPLIISLPFKIMLFVMVDGWT  236
            F+ SEL+++FQIGF++++PF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFV+VDGWT
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  237  LVLGSLASSF  246
             +L++L  S+
Sbjct  183  RLLDGLFYSY  192

647) fliP in NC_009494


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 85.5 bits (305),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 133/190 (70%), Gaps = 11/190 (5%)

Query  66   TSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERI  125
            T+F +I +VL I R+AIG+ Q+P N  L GIAL  T F+M+PVF+ + +   +  + E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  DFSLALSNAQK----PLRQFMLNQ-TRKNDLSLFEKFAHNVPKSLDEIP----MSVLIPA  176
            D   A+ +A K    PLR FM  +     +  L+E+  +  PK + + +    + +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  177  FITSELKTAfqigfilflpfliidlVVSSVLMAMGMMMLSPLIISLPFKIMLFVMVDGWT  236
            F+ SEL+++FQIGF++++PF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFV+VDGWT
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  237  LVLGSLASSF  246
             +L++L  S+
Sbjct  183  RLLDGLFYSY  192

648) LPE509_01400 in NC_020521


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 85.5 bits (305),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 133/190 (70%), Gaps = 11/190 (5%)

Query  66   TSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERI  125
            T+F +I +VL I R+AIG+ Q+P N  L GIAL  T F+M+PVF+ + +   +  + E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  DFSLALSNAQK----PLRQFMLNQ-TRKNDLSLFEKFAHNVPKSLDEIP----MSVLIPA  176
            D   A+ +A K    PLR FM  +     +  L+E+  +  PK + + +    + +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  177  FITSELKTAfqigfilflpfliidlVVSSVLMAMGMMMLSPLIISLPFKIMLFVMVDGWT  236
            F+ SEL+++FQIGF++++PF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFV+VDGWT
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  237  LVLGSLASSF  246
             +L++L  S+
Sbjct  183  RLLDGLFYSY  192

649) fliP in NC_002942


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 85.5 bits (305),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 133/190 (70%), Gaps = 11/190 (5%)

Query  66   TSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERI  125
            T+F +I +VL I R+AIG+ Q+P N  L GIAL  T F+M+PVF+ + +   +  + E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  DFSLALSNAQK----PLRQFMLNQ-TRKNDLSLFEKFAHNVPKSLDEIP----MSVLIPA  176
            D   A+ +A K    PLR FM  +     +  L+E+  +  PK + + +    + +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  177  FITSELKTAfqigfilflpfliidlVVSSVLMAMGMMMLSPLIISLPFKIMLFVMVDGWT  236
            F+ SEL+++FQIGF++++PF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFV+VDGWT
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  237  LVLGSLASSF  246
             +L++L  S+
Sbjct  183  RLLDGLFYSY  192

650) fliP in NC_021350


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 85.5 bits (305),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 133/190 (70%), Gaps = 11/190 (5%)

Query  66   TSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERI  125
            T+F +I +VL I R+AIG+ Q+P N  L GIAL  T F+M+PVF+ + +   +  + E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  DFSLALSNAQK----PLRQFMLNQ-TRKNDLSLFEKFAHNVPKSLDEIP----MSVLIPA  176
            D   A+ +A K    PLR FM  +     +  L+E+  +  PK + + +    + +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  177  FITSELKTAfqigfilflpfliidlVVSSVLMAMGMMMLSPLIISLPFKIMLFVMVDGWT  236
            F+ SEL+++FQIGF++++PF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFV+VDGWT
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  237  LVLGSLASSF  246
             +L++L  S+
Sbjct  183  RLLDGLFYSY  192

651) fliP in NC_021499


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 85.5 bits (305),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 130/188 (70%), Gaps = 8/188 (4%)

Query  63   LMTC--FTRFVIVLAILRQAIGLQQSPPNNVLVGIALIMTLLVMRPVWQEM------YST  114
            ++ C  F ++ +VL I R+AIG+QQ+PPN  L GIAL  TL++M PV  EM       + 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  115  AYQPFEADAISLEEGLERAKTTLSHFMLAQTNRNSLETMVSLAGEKMPDKLEELDFSLLL  174
              + F A   +  + +E  +T +++ + ++ + + LE    +    M+DK    D+ L++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  175  PSFVLSELKTAFQLGFMIFVPFLVIDlvvasvlmamgmmmlspmmislpFKLMVFVLVDG  234
            P+FVLSEL+++FQ+GF+I++PF+VIDL+V+++L+A+GM M++PM ISLP+K+++FVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  235  WALMMGTL  242
            W+ +++ L
Sbjct  181  WTRLLDGL  188

652) fliP in NC_018177


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 85.5 bits (305),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 129/188 (69%), Gaps = 8/188 (4%)

Query  64   MMTC--FTRFIIVLAILRQAIGLQQSPPNQVLIGIALIVTLLVMRPVWQEIHDTA-----  116
            M+ C  F ++ +VL I R+AIG+QQ+PPN  L GIAL  TL++M PV  E+ D       
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  117  -FEPFQNDEISLEQALEVSKESLSGFMLAQTNKSSLETMVSLAGEEIPENLEELDFSLLL  175
             ++ F   E +  + +E  +  ++  + ++ +   LE    +   E++++    D+ L++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  176  PAFVLSELKTAFQLGFMIFMPFLVIDlvvasvlmamgmmmlspmmislpFKLMVFVLVDG  235
            PAFVLSEL+++FQ+GF+I++PF+VIDL+V+++L+A+GM M++PM ISLP+K+++FVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WALLMGTL  243
            W+ L++ L
Sbjct  181  WTRLLDGL  188

653) fliP in NC_010334


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 85.2 bits (304),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 82/188 (44%), Positives = 133/188 (71%), Gaps = 6/188 (3%)

Query  60   TSFTRIIVVLAILRQALGLQQSPPNKVLIGIALVMTIFIMRPVGQEIYDDAF-LPYDMGQ  118
            T+F +I +VL I R+A+G+QQ+PPN  L GIAL  T+FIM PV  E+ D    LP +++ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  119  IELPEAVARGEV-PLRQFM---LAQTRETDL-EQMLKIADEPITLTADEIPFFVLMPAFV  173
            +   E+ ++  V PLR FM   L    +T+L E+  ++    ++  A    +++++PAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  174  LSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlspliislpFKLMVFVLVDGWSMT  233
            LSEL+++FQIGFL+++PF+VIDL+V+++L+++GM M++P+ ISLP+K+++FVLVDGW+  
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  234  VSTLVASY  241
            +  L  SY
Sbjct  185  LDGLFYSY  192

654) fliP in NC_018708


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 85.2 bits (304),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 76/186 (41%), Positives = 124/186 (67%), Gaps = 10/186 (5%)

Query  51   TGFTRIVIVLSLLRQALGTQSAPPNQVIIGLSLFLTFFVMGPTL----DRVYQDAYVPYT  106
            T+F +I +VL + R+A+G Q APPN  + G++L  T+F+M+P +    DRV         
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV--KKLPEHL  62

Query  107  NNTIGFELALDRAEAPMRSFMLKQ-TRQSDFALFSRLARLDPKVTAETAPIRVL---VPA  162
            +   + E A  +   P+R+FM ++   + +  L+    R+ PK  A+ A+   L   VPA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  163  FVTSELKSAFQIGFMIFIPFLVIDmvvssilmslgmmmlspvlvALPFKLMLFVLADGWN  222
            FV SEL+++FQIGF+I+IPF+VID++VS+IL++LGM M++P+ ++LP+K++LFVL DGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  223  LLIGSL  228
             L+++L
Sbjct  183  RLLDGL  188

655) fliP in NC_010520


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 84.9 bits (303),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 77/184 (42%), Positives = 127/184 (70%), Gaps = 6/184 (3%)

Query  76   TSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKA--IQPYMKN  133
            T+F++  +V+ + RNA+G QQ+PPN  + G+AL  TLFIM PV+SE+  +   +   +  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  134  KITQEQAVETGAKPLRQFMLKQ-TRQKDLKLFVDLAKPNFKVTKDNAP---LYIVVPAFI  189
              + E A      PLR FM ++   + +  L+ +  +   K   D+A+   L +VVPAF+
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  190  ISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLL  249
            +SEL+++FQIGFL++IPF++IDL+V+++L+++GM M++P+ ISLP+K+LLFV+VDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  250  VKSL  253
            + +L
Sbjct  185  LDGL  188

656) fliP in NC_009439


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 84.9 bits (303),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 78/188 (42%), Positives = 130/188 (70%), Gaps = 8/188 (4%)

Query  64   MMTC--FTRFIIVLAILRQAIGLQQSPPNPVLIGIALCLTLLVMRPVWQEM------YTE  115
            M+ C  F ++ +VL I R+AIG+QQ+PPN  L GIAL  TL++M PV  EM        E
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  116  AYVPFEADQISLEQGLGEGKRIISQFMLAQTSKNSLETLVALAGEELPEDLAQLDFSLLL  175
                F A + +  + +   + ++++ + ++   + LE    +   E+++  ++ D+ L++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  176  PAFVLSELKTAFQLGFMIFVPFLVIDlvvasvlmamgmmmlspmmislpFKLLVFVLVDG  235
            PAFVLSEL+++FQ+GF+I++PF+VIDL+V+++L+A+GM M++PM ISLP+K+L+FVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  236  WTLLVGTL  243
            WT L++ L
Sbjct  181  WTRLLDGL  188

657) Desmer_3905 in NC_018515


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 84.9 bits (303),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 77/190 (41%), Positives = 129/190 (68%), Gaps = 8/190 (4%)

Query  72   TSFTRIIIVLSFVRNALGTQQLPPNQVLVGlslflsffIMAPTWNQINT--NAVQPYMQN  129
            T+F +I +VL + RNA+G QQ PPN  L G++L  ++FIMAP  +++    + +   ++ 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  130  QITQSEAIDRAEEPLRMFMFKQ-TREKDLELFVGLSKMERPKTYREVPT----YVLIPAF  184
              +   A  +  EPLR FM ++   + + +L+    +M +PK   + ++     +++PAF
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVPAF  123

Query  185  VISELKTAFQMGFAIFIPFIVIDMIVSSTlmsigmmmlppmmislpFKLLLFVLVDGWHL  244
            V+SEL+++FQ+GF I+IPFIVID+IVS+ L+++GM M++PM ISLP+K+LLFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  245  VVESLVNSFK  254
            ++++L  S+ 
Sbjct  184  LLDGLFYSYM  193

658) fliP in NC_009901


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 84.7 bits (302),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 76/189 (41%), Positives = 131/189 (70%), Gaps = 8/189 (4%)

Query  60   TSFTRIIVVLGILRQALGLQQSPPNKVLIGIALVMTIFIMRPVGEEIYE--KAFLPYDQG  117
            T+F +I +VL I R+A+G+QQ+PPN  L GIAL  T+FIM PV  E+ +  K +    + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  118  IIELPEAVERGEKPLRQFMLAQTRETDLE-QMLKIADE--PTTLTAEEIP--FFVLMPAY  172
            +  +  A  +   PLR FM ++  + D++ ++L  ++   P  ++       +++++PA+
Sbjct  65   FAAMESAGKHVVEPLRTFM-TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  173  VLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlspliislpFKLMVFVLVDGWSM  232
            VLSEL+++FQIGFL+++PF+VIDL+V+++L+++GM M++P+ ISLP+K+++FVLVDGW+ 
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  233  TVSTLVASY  241
             +  L  SY
Sbjct  184  LLDGLFYSY  192

659) Sbal175_0426 in NC_017571


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 84.4 bits (301),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 80/187 (43%), Positives = 130/187 (70%), Gaps = 11/187 (5%)

Query  61   TSFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPV----GDKIYKEAYLPYD  116
            T+F +I +VL I R+A+G+QQ+PPN  L GIAL  T+FIM PV    GD++ K   LP +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK---LPEH  61

Query  117  QGKIELMEAVSIAKV-PLTRFMLAQTRATDLEQMLKIANE--PTHM-KTAEEVPFFVLMP  172
             + +  ME+ +   V PL  FM  +  +    ++L  ++   P +M   A    +++++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  173  AFVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlspliislpFKLMVFVLVDGW  232
            AFVLSEL+++FQIGFL+++PF+VIDL+V+++L+++GM M++P+ ISLP+K+++FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  233  SMTVSTL  239
            +  +  L
Sbjct  182  TRLLDGL  188

660) BN865_13040 in NC_022132


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 84.4 bits (301),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 77/187 (42%), Positives = 129/187 (69%), Gaps = 12/187 (6%)

Query  64   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEQI  123
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  124  ----GYEEAFARGVKPFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  174
                + E A  + V P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  175  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlppvmISLPFKLLIFVLVDGW  234
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P+ ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  235  NLLVQRL  241
              L++ L
Sbjct  182  TRLLDGL  188

661) fliP in NC_022347


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 84.4 bits (301),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 77/187 (42%), Positives = 129/187 (69%), Gaps = 12/187 (6%)

Query  64   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEQI  123
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  124  ----GYEEAFARGVKPFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  174
                + E A  + V P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  175  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlppvmISLPFKLLIFVLVDGW  234
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P+ ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  235  NLLVQRL  241
              L++ L
Sbjct  182  TRLLDGL  188

662) fliP in NC_007645


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 84.4 bits (301),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 78/189 (42%), Positives = 131/189 (70%), Gaps = 15/189 (7%)

Query  69   TSFTRIIIVFSILRQALGLQQAPSNQILVGIALFLTFFIMGPTFKQANEVALQPYLAEQL  128
            T+F +I +V+ I R+A+G+QQAP+N  L GIAL  T+FIM+P F +  +   +  L+E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  129  TA----QEAVAKASEPFREFMLRQTRESDLGLFIRLAGDENK------YANPEEVPFTIL  178
             +    + A     EP+R FM   TR+ D ++  +L  + ++        ++    + ++
Sbjct  63   DTFAAMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLV  119

Query  179  MPAFVTSELKTAfqigflifipfliiDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVD  238
            +PAFV SEL+++FQIGFLI+IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVD
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  239  GWALIMGTL  247
            GW+ +++ L
Sbjct  180  GWTRLLDGL  188

663) fliP in NC_012563


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 84.4 bits (301),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 76/186 (41%), Positives = 126/186 (68%), Gaps = 10/186 (5%)

Query  76   TSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKA--IQPYMKN  133
            T+F++  +V+ + RNA+G QQ+PPN  + G+AL  TLFIM PV+SE+  +   +   +  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  134  KITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKPNF------KVTKDNAPLYIVVPA  187
              + E A      PLR FM ++        ++E ++         K ++D+  L +VVPA
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVVPA  122

Query  188  FIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWY  247
            F++SEL+++FQIGFL++IPF++IDL+V+++L+++GM M++P+ ISLP+K+LLFV+VDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  248  LLVKSL  253
             L+ +L
Sbjct  183  RLLDGL  188

664) fliP in NC_009697


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 84.4 bits (301),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 76/186 (41%), Positives = 126/186 (68%), Gaps = 10/186 (5%)

Query  76   TSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKA--IQPYMKN  133
            T+F++  +V+ + RNA+G QQ+PPN  + G+AL  TLFIM PV+SE+  +   +   +  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  134  KITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKPNF------KVTKDNAPLYIVVPA  187
              + E A      PLR FM ++        ++E ++         K ++D+  L +VVPA
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVVPA  122

Query  188  FIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWY  247
            F++SEL+++FQIGFL++IPF++IDL+V+++L+++GM M++P+ ISLP+K+LLFV+VDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  248  LLVKSL  253
             L+ +L
Sbjct  183  RLLDGL  188

665) fliP in NC_009495


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 84.4 bits (301),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 76/186 (41%), Positives = 126/186 (68%), Gaps = 10/186 (5%)

Query  76   TSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKA--IQPYMKN  133
            T+F++  +V+ + RNA+G QQ+PPN  + G+AL  TLFIM PV+SE+  +   +   +  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  134  KITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKPNF------KVTKDNAPLYIVVPA  187
              + E A      PLR FM ++        ++E ++         K ++D+  L +VVPA
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVVPA  122

Query  188  FIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWY  247
            F++SEL+++FQIGFL++IPF++IDL+V+++L+++GM M++P+ ISLP+K+LLFV+VDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  248  LLVKSL  253
             L+ +L
Sbjct  183  RLLDGL  188

666) fliP in NC_009698


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 84.4 bits (301),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 76/186 (41%), Positives = 126/186 (68%), Gaps = 10/186 (5%)

Query  76   TSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKA--IQPYMKN  133
            T+F++  +V+ + RNA+G QQ+PPN  + G+AL  TLFIM PV+SE+  +   +   +  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  134  KITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKPNF------KVTKDNAPLYIVVPA  187
              + E A      PLR FM ++        ++E ++         K ++D+  L +VVPA
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVVPA  122

Query  188  FIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWY  247
            F++SEL+++FQIGFL++IPF++IDL+V+++L+++GM M++P+ ISLP+K+LLFV+VDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  248  LLVKSL  253
             L+ +L
Sbjct  183  RLLDGL  188

667) fliP in NC_012658


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 84.4 bits (301),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 76/186 (41%), Positives = 126/186 (68%), Gaps = 10/186 (5%)

Query  76   TSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKA--IQPYMKN  133
            T+F++  +V+ + RNA+G QQ+PPN  + G+AL  TLFIM PV+SE+  +   +   +  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  134  KITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKPNF------KVTKDNAPLYIVVPA  187
              + E A      PLR FM ++        ++E ++         K ++D+  L +VVPA
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVVPA  122

Query  188  FIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWY  247
            F++SEL+++FQIGFL++IPF++IDL+V+++L+++GM M++P+ ISLP+K+LLFV+VDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  248  LLVKSL  253
             L+ +L
Sbjct  183  RLLDGL  188

668) Sbal117_4142 in NC_017579


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 84.2 bits (300),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 80/187 (43%), Positives = 130/187 (70%), Gaps = 11/187 (5%)

Query  61   TSFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPV----GDKIYKEAYLPYD  116
            T+F +I +VL I R+A+G+QQ+PPN  L GIAL  T+FIM PV    GD++ K   LP +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK---LPEH  61

Query  117  QGKIELMEAVSIAKV-PLTRFMLAQTRATDLEQMLKIANE--PTHM-KTAEEVPFFVLMP  172
             + +  ME+ +   V PL  FM  +  +    ++L  ++   P +M   A    +++++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  173  AFVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlspliislpFKLMVFVLVDGW  232
            AFVLSEL+++FQIGFL+++PF+VIDL+V+++L+++GM M++P+ ISLP+K+++FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  233  SMTVSTL  239
            +  +  L
Sbjct  182  TRLLDGL  188

669) fliP in NC_009052


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 84.2 bits (300),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 80/187 (43%), Positives = 130/187 (70%), Gaps = 11/187 (5%)

Query  61   TSFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPV----GDKIYKEAYLPYD  116
            T+F +I +VL I R+A+G+QQ+PPN  L GIAL  T+FIM PV    GD++ K   LP +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK---LPEH  61

Query  117  QGKIELMEAVSIAKV-PLTRFMLAQTRATDLEQMLKIANE--PTHM-KTAEEVPFFVLMP  172
             + +  ME+ +   V PL  FM  +  +    ++L  ++   P +M   A    +++++P
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  173  AFVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlspliislpFKLMVFVLVDGW  232
            AFVLSEL+++FQIGFL+++PF+VIDL+V+++L+++GM M++P+ ISLP+K+++FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  233  SMTVSTL  239
            +  +  L
Sbjct  182  TRLLDGL  188

670) H04402_02743 in NC_017299


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 84.2 bits (300),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 77/184 (42%), Positives = 127/184 (70%), Gaps = 6/184 (3%)

Query  76   TSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKA--IQPYMKN  133
            T+F++  +V+ + RNA+G QQ+PPN  + G+AL  TLFIM PV+SE+  +   +   +  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  134  KITQEQAVEIGAKPLRQFMLKQ-TRQKDLKLFVDLAKPNFKVTKDNAP---LYIVVPAFI  189
              + E A      PLR FM ++   + +  L+ +  +   K   D+A+   L +VVPAF+
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  190  ISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLL  249
            +SEL+++FQIGFL++IPF++IDL+V+++L+++GM M++P+ ISLP+K+LLFV+VDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  250  VKSL  253
            + +L
Sbjct  185  LDGL  188

671) fliP in NC_010516


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 84.2 bits (300),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 77/184 (42%), Positives = 126/184 (69%), Gaps = 6/184 (3%)

Query  76   TSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKA--IQPYMKN  133
            T+F++  +V+ + RNA+G QQ+PPN  + G+AL  TLFIM PV+SE+  +   +   +  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  134  KINQEQAVEIGAKPLRQFMLKQ-TRQKDLKLFVDLAKPNFKVTKDNAP---LYIVVPAFI  189
                E A      PLR FM ++   + +  L+ +  +   K   D+A+   L +VVPAF+
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  190  ISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLL  249
            +SEL+++FQIGFL++IPF++IDL+V+++L+++GM M++P+ ISLP+K+LLFV+VDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  250  VKSL  253
            + +L
Sbjct  185  LDGL  188

672) fliP in NC_007954


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 83.9 bits (299),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 80/188 (43%), Positives = 134/188 (72%), Gaps = 14/188 (7%)

Query  61   TSFTRIVVVLAILRQALGLQQSPPNKVLIGIALVLTLFIMRPV----GDSIYKEAYLPYD  116
            T+F +I +VL I R+A+G+QQ+PPN  L GIAL  TLFIM PV    GD + K   LP +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK---LPEH  61

Query  117  QGKIELMAAIDIAKV-PLSQFMLAQTRETDLE-QMLKIANE--PIDLT--PAEIPFLVLM  170
             + +  M + +   V PL  FM ++  + D++ ++L  ++   P +++  ++   +L+++
Sbjct  62   LDTFAAMESAGKHVVEPLRTFM-TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  171  PAFVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlspliislpFKLMIFVLVDG  230
            PAFVLSEL+++FQIGFL+++PF+VIDL+V+++L+++GM M++P+ ISLP+K+++FVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  231  WAMTVSTL  238
            W+  +  L
Sbjct  181  WTRLLDGL  188

673) fliP in NC_009831


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 83.4 bits (297),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 80/184 (44%), Positives = 128/184 (70%), Gaps = 6/184 (3%)

Query  60   TSFTRIIVVLAILRQALGLQQSPPNKVLLGIALVLTLFVMRPVGQVMYDEAY-LPYD-QG  117
            T+F +I +VL I R+A+G+QQ+PPN  L GIAL  TLF+M PV   M D    LP + + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  118  LIELPEAVNIGVVPLRKFM---LAQTRETDL-EQMLKIADEPVTLTADEIPFFVLMPAFV  173
            +  +  A +  V PLR FM   L    +T+L E+  ++    ++  A    +++++PAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  174  LSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlspliislpFKLMVFVLVDGWSMT  233
            LSEL+++FQIGFL+++PF+VIDL+V+++L+++GM M++P+ ISLP+K+++FVLVDGW+  
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  234  VSTL  237
            +  L
Sbjct  185  LDGL  188

674) fliP in NC_017297


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 83.1 bits (296),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 77/184 (42%), Positives = 127/184 (70%), Gaps = 6/184 (3%)

Query  76   TSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMYPVYSEVNTKA--IQPYMKN  133
            T+F++  +V+ + RNA+G QQ+PPN  + G+AL  TLFIM PV+SE+  +   +   +  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  134  KITQEQAVEIGAKPLRQFMLKQ-TRQKDLKLFVDLAKPNFKVTKDNAP---LYIVVPAFI  189
              + E A      PLR FM ++   + +  L+ +  +   K   D+A+   L +VVPAF+
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  190  ISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLL  249
            +SEL+++FQIGFL++IPF++IDL+V+++L+++GM M++P+ ISLP+K+LLFV+VDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  250  VKSL  253
            + +L
Sbjct  185  LDGL  188

675) fliP in NC_009699


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 83.1 bits (296),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 77/184 (42%), Positives = 127/184 (70%), Gaps = 6/184 (3%)

Query  76   TSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMYPVYSEVNTKA--IQPYMKN  133
            T+F++  +V+ + RNA+G QQ+PPN  + G+AL  TLFIM PV+SE+  +   +   +  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  134  KITQEQAVEIGAKPLRQFMLKQ-TRQKDLKLFVDLAKPNFKVTKDNAP---LYIVVPAFI  189
              + E A      PLR FM ++   + +  L+ +  +   K   D+A+   L +VVPAF+
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  190  ISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLL  249
            +SEL+++FQIGFL++IPF++IDL+V+++L+++GM M++P+ ISLP+K+LLFV+VDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  250  VKSL  253
            + +L
Sbjct  185  LDGL  188

676) BN341_p1310 in NC_019674


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 82.6 bits (294),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 75/186 (41%), Positives = 123/186 (67%), Gaps = 10/186 (5%)

Query  65   TSFIRLIVVFSFLRTALGTQQTPPTQILVSLALILTFFIMEPAAKKSYDTAIKPYLAEKI  124
            T+F+++ +V+ + R A+G QQ+PP   L ++AL  T+FIM P      D   K  L+E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  125  SYTEAFEVG----IVPFKEFMLQNTREKDLALFF----RIRHLENPKTPSAVPLTVLVPA  176
                A E +    + P++ FM +N      + ++    R++  E +  +S   L ++VPA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  177  FMISELKTGFQIGFLLYLPFLVIDMVvssilmamgmmmlppvmiSLPFKILVFILVDGFN  236
            F++SEL++GFQIGFL+Y+PF+VID++VS+IL+A+GM M++P+ ISLP+KIL+F+LVDG  
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  237  LLVENL  242
             L++ L
Sbjct  183  RLLDGL  188

677) fliP in NC_008048


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 82.3 bits (293),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 80/185 (44%), Positives = 127/185 (69%), Gaps = 12/185 (6%)

Query  75   FTRIIIVLSILRHALGLQQTPPNQvlvglslflslfvMQPVISEV-NRVAIEPYGQEQID  133
            F +I +VL I R+A+G+QQ+PPN  L G++L  +LF+M PV+SE+ +RV   P   E++D
Sbjct  7    FLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLP---EHLD  63

Query  134  IGEAVSRSG----DALHGFMMKQ-TRKTDLMMFAKIARA-PAYASPKDVPFSILL--PAF  185
               A+  +G    ++L+ FM ++     +  ++ +  R  P   + K     +LL  PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  186  VTSELKTAFQIGFLIFLPFLVIDLIVasalmslgmmmlsPTIISMPFKLLLFVLVDGWAL  245
            V SEL+++FQIGFLI++PF+VIDLIV++ L++LGM M++P  IS+P+K+LLFVLVDGW+ 
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  246  TMGSL  250
             +++L
Sbjct  184  LLDGL  188

678) fliP in NC_009952


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 82.3 bits (293),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 127/194 (66%), Gaps = 7/194 (3%)

Query  55   MITCFPFM--VTVLSILRQGIGLQQSPPNMLIISLALFLTYFVMDPVFRE--AWSRGIQP  110
            MI C +F+    VL I R++IG+QQ+PPNM + ++AL  T F+M PVF E   + + +  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  111  MVDGAVDMEEGFRAALEPFIRFMQARTDPETLARL--GNLRMETAGVAPFELDAPPISVL  168
             +D    ME + +  +EP+  FM    DP+  ++L     RM    +A        + ++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMAD-KASRDDLLLV  119

Query  169  IPSFLLSEIEKAfqigfliflpfliidliVAAILMSMGMMMVPPAIVSLPFKLAFFVVAD  228
            +P+F+LSE++ +FQIGFLI++PF++IDLIV+ IL+++GM MV+P  +SLP+K+ +FV+ D
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  229  GWTLLSEALLRSYM  242
            GWT L ++L+ SYM
Sbjct  180  GWTRLLDGLFYSYM  193

679) Metme_4070 in NC_015572


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 82.1 bits (292),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 136/191 (72%), Gaps = 15/191 (7%)

Query  69   SFTRIMIVlgllrqalgaqqaPSNQVLLGLSLFLTIFIMMPVLEKVNDTAVQPYLEEKMD  128
            +F +I +VL + R+A+G QQAP+N  L G++L  T+FIM PV+  + D   +  L E +D
Sbjct  6    AFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHLD  63

Query  129  AVTALQAAS----EPLKQFMLKQTRESDIDMFV-----RISGKEQINKPEDVPFSLLLPA  179
            + +A+++A+    EPL+ FM ++  ++DI+  +     R+  KE  +K+    + L++PA
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNL-DPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  180  YVTSELKTAFQIGFLVFLPFLVIDlvvasvlmsmgmmmlspmivsLPFKIMLFVLADGWS  239
            +V SEL+++FQIGFL+++PF+VIDL+V+++L+++GM M++PM +SLP+KI+LFVL DGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  240  LVLEMLAASFY  250
             +L+ L   FY
Sbjct  183  RLLDGL---FY  190

680) fliP in NC_009707


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 81.8 bits (291),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  61   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEQI  120
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  121  GYEEAFIKGTK----PFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  171
            +   A   + K    P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  172  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlpptmISLPFKLLIFVLVDGW  231
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P  ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  232  NLLVQRL  238
              L++ L
Sbjct  182  TRLLDGL  188

681) fliP in NC_022352


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 81.3 bits (289),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  50   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKI  109
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  110  GYEEAFIKGAK----PFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  160
            +   A   ++K    P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  161  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlpptmISLPFKLLIFVLVDGW  220
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P  ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  221  NLLVQRL  227
              L++ L
Sbjct  182  TRLLDGL  188

682) ICDCCJ07001_789 in NC_014802


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 81.3 bits (289),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  47   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKI  106
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  107  GYEEAFIKGAK----PFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  157
            +   A   ++K    P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  158  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlpptmISLPFKLLIFVLVDGW  217
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P  ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  218  NLLVQRL  224
              L++ L
Sbjct  182  TRLLDGL  188

683) fliP in NC_022362


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 81.0 bits (288),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  61   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKI  120
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  121  GYEEAFIKGAK----PFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  171
            +   A   ++K    P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  172  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlpptmISLPFKLLIFVLVDGW  231
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P  ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  232  NLLVQRL  238
              L++ L
Sbjct  182  TRLLDGL  188

684) fliP in NC_022351


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 81.0 bits (288),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  61   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKI  120
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  121  GYEEAFIKGAK----PFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  171
            +   A   ++K    P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  172  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlpptmISLPFKLLIFVLVDGW  231
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P  ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  232  NLLVQRL  238
              L++ L
Sbjct  182  TRLLDGL  188

685) fliP in NC_022353


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 81.0 bits (288),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  61   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKI  120
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  121  GYEEAFIKGAK----PFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  171
            +   A   ++K    P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  172  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlpptmISLPFKLLIFVLVDGW  231
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P  ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  232  NLLVQRL  238
              L++ L
Sbjct  182  TRLLDGL  188

686) M635_08385 in NC_021834


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 81.0 bits (288),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  61   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKI  120
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  121  GYEEAFIKGAK----PFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  171
            +   A   ++K    P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  172  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlpptmISLPFKLLIFVLVDGW  231
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P  ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  232  NLLVQRL  238
              L++ L
Sbjct  182  TRLLDGL  188

687) fliP in NC_009839


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 81.0 bits (288),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  61   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKI  120
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  121  GYEEAFIKGAK----PFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  171
            +   A   ++K    P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  172  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlpptmISLPFKLLIFVLVDGW  231
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P  ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  232  NLLVQRL  238
              L++ L
Sbjct  182  TRLLDGL  188

688) fliP in NC_008787


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 81.0 bits (288),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  61   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLSEKI  120
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  121  GYEEAFIKGAK----PFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  171
            +   A   ++K    P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  172  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlpptmISLPFKLLIFVLVDGW  231
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P  ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  232  NLLVQRL  238
              L++ L
Sbjct  182  TRLLDGL  188

689) fliP in NC_017279


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 81.0 bits (288),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  61   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKI  120
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  121  GYEEAFIKGAK----PFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  171
            +   A   ++K    P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  172  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlpptmISLPFKLLIFVLVDGW  231
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P  ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  232  NLLVQRL  238
              L++ L
Sbjct  182  TRLLDGL  188

690) fliP in NC_017280


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 81.0 bits (288),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  61   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKI  120
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  121  GYEEAFIKGAK----PFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  171
            +   A   ++K    P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  172  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlpptmISLPFKLLIFVLVDGW  231
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P  ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  232  NLLVQRL  238
              L++ L
Sbjct  182  TRLLDGL  188

691) fliP in NC_002163


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 81.0 bits (288),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  61   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKI  120
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  121  GYEEAFIKGAK----PFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  171
            +   A   ++K    P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  172  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlpptmISLPFKLLIFVLVDGW  231
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P  ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  232  NLLVQRL  238
              L++ L
Sbjct  182  TRLLDGL  188

692) fliP in NC_018521


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 81.0 bits (288),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  61   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKI  120
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  121  GYEEAFIKGAK----PFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  171
            +   A   ++K    P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  172  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlpptmISLPFKLLIFVLVDGW  231
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P  ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  232  NLLVQRL  238
              L++ L
Sbjct  182  TRLLDGL  188

693) fliP in NC_018709


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 81.0 bits (288),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  61   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKI  120
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  121  GYEEAFIKGAK----PFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  171
            +   A   ++K    P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  172  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlpptmISLPFKLLIFVLVDGW  231
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P  ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  232  NLLVQRL  238
              L++ L
Sbjct  182  TRLLDGL  188

694) fliP in NC_003912


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 81.0 bits (288),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  61   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKI  120
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  121  GYEEAFIKGAK----PFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  171
            +   A   ++K    P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  172  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlpptmISLPFKLLIFVLVDGW  231
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P  ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  232  NLLVQRL  238
              L++ L
Sbjct  182  TRLLDGL  188

695) fliP in NC_017281


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 81.0 bits (288),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 127/187 (68%), Gaps = 12/187 (6%)

Query  61   TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKI  120
            T+FL++ +V+ + R+A+G Q  PPN  L  +AL  T+FIM PV +    + +K  L+E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  121  GYEEAFIKGAK----PFKDFMLKN-TREKDLALFYRIRNLPNPKTIDDVP----LTVLVP  171
            +   A   ++K    P++ FM +N   + +  L+   + +  PK + D +    L ++VP
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRM-WPKEMADKASRDDLLLVVP  121

Query  172  AFMISELKTAFEIGFLIYLPFLVIDmvvssvlmamgmmmlpptmISLPFKLLIFVLVDGW  231
            AF++SEL+++F+IGFLIY+PF+VID++VS++L+A+GM M++P  ISLP+K+L+FVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  232  NLLVQRL  238
              L++ L
Sbjct  182  TRLLDGL  188

696) Afer_0155 in NC_013124


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 80.7 bits (287),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 74/184 (41%), Positives = 126/184 (69%), Gaps = 11/184 (5%)

Query  44   LVLFTGFVEIVVVLSITRNALGLSTTPPNQVLAGLALFLSLFVMAPTLGIVEHQAVLPYL  103
            +++ T+F+ I +VL ITRNA+G+  +PPN  L G+AL  +LF+MAP ++ + ++  +  L
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDR--VKKL  58

Query  104  HGHISAVVALDRAE----GPIKLWMLRHTRTQ-ELALFDVVTH----Hagvapaaaplda  154
              H+ +  A++ A      P++  M R+   + +  L++   +    + +  ++   L  
Sbjct  59   PEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  155  vvpaFILSELHSAFVMGFIIYVPFLVIDlvvssvlmslgmmmlPPTLVSLPFKLLLFVLV  214
            VVPAF+LSEL+++F +GF+IY+PF+VIDL+VS++L++LGM M++P  +SLP+K+LLFVLV
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  215  DGWT  218
            DGWT
Sbjct  179  DGWT  182

697) fliP in NC_018268


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 79.4 bits (282),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 78/193 (41%), Positives = 140/193 (73%), Gaps = 17/193 (8%)

Query  88   TSFTRIIIVFSILRQALGLQSAPSNQILLGLALFLTIFIMKPVLEE-ANRVGLQPYLQEE  146
            T+F +I +V+ I R+A+G+Q AP+N  L G+AL  T+FIM PV+ E ++RV     L E+
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK---LPEH  61

Query  147  MTSLEAVEAAS----EPFKKFMLAQTRESDLGLFMRMADEQFVSPEDVT-------FWVL  195
            + ++ A+E+A+    EP++ FM ++  ++D+   + + + Q + P +++       + ++
Sbjct  62   LDTFAAMESAGKHVVEPLRTFM-TRNLDPDIQTHL-LENTQRMWPKEMADKASRDDLLLV  119

Query  196  LPAFVTSELKTAfqigfilfipfliiDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVD  255
            +PAFV SEL+++FQIGF+++IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVD
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  256  GWALIMGTLAASY  268
            GW+ +++ L  SY
Sbjct  180  GWTRLLDGLFYSY  192

698) fliP in NC_008699


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 79.4 bits (282),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 89/189 (48%), Positives = 132/189 (70%), Gaps = 6/189 (3%)

Query  82   CTAFTKIFVVLGLTRNALGLQQTPPNQVLAGLALFLSLFVMGPVLSDINEV--GLQPYLN  139
            CTAF KI +VL +TRNA+G+QQ+PPN  L G+AL  +LF+M+PV+S++ +    L   L+
Sbjct  4    CTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLD  63

Query  140  GDKTTSVAIQDGIEPLRDFMLDNTDDDELMLLTNVAGRDLPEDRADVSTAT----LIPAF  195
               +   A ++ +EPLR FM  N D D    L + + R  P + AD ++      ++PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  196  VLTELKQAfiigfiifipflviDLVvsgalmalgmmmmppvmvslpFKLLLFVLVDGWAL  255
            VL+EL+ +F IGF+I+IPF+VIDL+VS  L+ALGM M++P+ +SLP+K+LLFVLVDGW+ 
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  256  VIKSLVASY  264
            ++ +L  SY
Sbjct  184  LLDGLFYSY  192

699) fliP in NC_010337


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 78.6 bits (279),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 81/192 (43%), Positives = 126/192 (66%), Gaps = 8/192 (4%)

Query  59   MMTC--FTRIIVVLHFTRTALALQTMPPNQVLIGltlfltffIMAPTWSAINDQA--LQP  114
            M+ C  F +I +VL +TR A+++Q  PPN  L G++L  T+FIMAP  S + D+   L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  115  YLAGTLSQEQALEKASTPLREFMLKQ-TREKDLALFVNMSDM---EQPQTYRDIPIKVVI  170
             L    + E A      PLR FM ++   + +  L+ N   M   E ++      + +V+
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  171  PAFILSELKTAFQIGAVIYLPFIVIDmivgsvlmsmgmmmlppmmislpFKVLVFVLVDG  230
            PAF+LSEL+++FQIG +IY+PFIVID+IV+++L+++GM M++PM ISLP+K+L+FVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  231  WYLIVRSLILSY  242
            W  ++ +L+ SY
Sbjct  181  WTRLLDGLFYSY  192

700) fliP in NC_008740


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 78.1 bits (277),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 77/192 (41%), Positives = 138/192 (72%), Gaps = 15/192 (7%)

Query  71   TSFTRIIVVFAILRQALGLQATPSNQILLGLALFLSIFIMKPVLEE-ANRVGLQPYLQEE  129
            T+F +I +V+ I R+A+G+Q +P+N  L G+AL  ++FIM PV+ E ++RV     L E+
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK---LPEH  61

Query  130  VTSLEAVELAS----QPFRKFM---LEQTREDDL---ALFMRIADVQYETPQDVSFWILM  179
            + ++ A+E A+    +P+R FM   L+   + +L   +  M+  ++   +++D  + +++
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD-DLLLVV  120

Query  180  PAFVTSELKTAfqigfilfipfliiDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDG  239
            PAFV SEL+++FQIGF+++IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  240  WALIMGTLAASY  251
            W+ +++ L  SY
Sbjct  181  WTRLLDGLFYSY  192

701) fliP in NC_017067


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 78.1 bits (277),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 77/192 (41%), Positives = 138/192 (72%), Gaps = 15/192 (7%)

Query  71   TSFTRIIVVFAILRQALGLQATPSNQILLGLALFLSIFIMKPVLEE-ANRVGLQPYLQEE  129
            T+F +I +V+ I R+A+G+Q +P+N  L G+AL  ++FIM PV+ E ++RV     L E+
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK---LPEH  61

Query  130  VTSLEAVELAS----QPFRKFM---LEQTREDDL---ALFMRIADVQYETPQDVSFWILM  179
            + ++ A+E A+    +P+R FM   L+   + +L   +  M+  ++   +++D  + +++
Sbjct  62   LDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD-DLLLVV  120

Query  180  PAFVTSELKTAfqigfilfipfliiDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDG  239
            PAFV SEL+++FQIGF+++IPF++ID++V+++L+A+GM M++P+ ISLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  240  WALIMGTLAASY  251
            W+ +++ L  SY
Sbjct  181  WTRLLDGLFYSY  192

702) PSM_A0909 in NC_014803


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 77.3 bits (274),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 74/183 (41%), Positives = 126/183 (69%), Gaps = 8/183 (4%)

Query  67   FTRIIIVLAILRQAMGLQQSPPNKILIGISLMLTMLIMRPVWQDIYQNAYT-PFQQQT-I  124
            F +I +VL I R+A+G+QQ+PPN  L GI+L  T++IM PV  ++ +     P + +T  
Sbjct  7    FLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDTFA  66

Query  125  GLEDALLTAEKPLRAFMLRQTRESELRQVLLIANE---PTTLTAEEIPFEVLM--PAFVL  179
            ++E A      PLR+FM R+  +++++  LL   +   P  ++      ++L+  PAFVL
Sbjct  67   AMESAGKHVVEPLRTFMTRNL-DPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFVL  125

Query  180  SELTTAFQIGFMLFIPFliidlvvssvlmsmgmmmlspliislPFKLMVFVLADGWSMIA  239
            SEL ++FQIGF+++IPF++IDL+VS++L+++GM M++P+ ISLP+K+++FVL DGW+ + 
Sbjct  126  SELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRLL  185

Query  240  GTL  242
            + L
Sbjct  186  DGL  188

703) spaP in NC_010067


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 76.5 bits (271),  Expect = 9e-16, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 136/200 (68%), Gaps = 15/200 (7%)

Query  25   TCFVKFSIVFVMVRNALGLQQIPSNMTLNGIALLLSMFVMWPI---MHDAYVYFEDEDVT  81
            T F+K+++V+++ RNA+G+QQ P+NM+L GIAL  ++F+M P+   M D    + ++  T
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  82   FNDISSLSKHVDEGLDGYRDYLIKYSDREL-VQFFENAQLKRQYGEETEAVKRDKDEIEK  140
            F  + S +KHV E L   R ++ +  D ++  +++EN+Q  R    E        D   +
Sbjct  65   FAAMESAGKHVVEPL---RTFMTRNLDPDIQTHLLENTQ--RMWPKEMA------DKASR  113

Query  141  PSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvllalgmmmmsPVTISTPIKLV  200
              ++ ++PA+ LSE++++F+IGF +Y+PF+V+DL+VS++LLALGM M++P+TIS P+K++
Sbjct  114  DDLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKIL  173

Query  201  LFVALDGWTLLSKGLILQYM  220
            LFV +DGWT L  GL+  YM
Sbjct  174  LFVLVDGWTRLLDGLFYSYM  193

704) fliP in NC_009092


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 74.2 bits (262),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 80/186 (44%), Positives = 130/186 (70%), Gaps = 10/186 (5%)

Query  72   TSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQAVK--PYIDE  129
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  T+FIMAPVF  + D+  K    +D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  130  TMTIEQAYDKGKEPLRAFML------AQTRLTDLETFVQISGYQNIQSPEDAPMSVLIPA  183
              ++E A     EPLR+FM        QT+L  LE   ++   +  + +    + +++PA
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHL--LENTQRMWPKEMADKASRDDLLLVVPA  122

Query  184  FITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlspmiVSLPFKIMLFVLVDGWS  243
            F+ SEL+++FQIGF++++PF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  244  LVMGTL  249
             +++ L
Sbjct  183  RLLDGL  188

705) Sput200_2731 in NC_017566


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 73.6 bits (260),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 79/186 (43%), Positives = 129/186 (70%), Gaps = 10/186 (5%)

Query  66   TSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQL  125
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  T+FIMAPVF  + D+  K  + E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  ----TLQQAFDKGKEPLRAFML----GQVRTTDLKTFIDISGYQNINSPEEAPMSVLVPA  177
                +++ A     EPLR+FM      +++T  L     +   +  + +    + ++VPA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  178  FITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlspmiVSLPFKIMLFVLVDGWG  237
            F+ SEL+++FQIGF++++PF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  238  LVLGTL  243
             +L+ L
Sbjct  183  RLLDGL  188

706) fliP in NC_009438


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 73.6 bits (260),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 79/186 (43%), Positives = 129/186 (70%), Gaps = 10/186 (5%)

Query  66   TSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQL  125
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  T+FIMAPVF  + D+  K  + E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  ----TLQQAFDKGKEPLRAFML----GQVRTTDLKTFIDISGYQNINSPEEAPMSVLVPA  177
                +++ A     EPLR+FM      +++T  L     +   +  + +    + ++VPA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  178  FITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlspmiVSLPFKIMLFVLVDGWG  237
            F+ SEL+++FQIGF++++PF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  238  LVLGTL  243
             +L+ L
Sbjct  183  RLLDGL  188

707) fliP in NC_008750


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 73.6 bits (260),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 79/186 (43%), Positives = 129/186 (70%), Gaps = 10/186 (5%)

Query  66   TSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQL  125
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  T+FIMAPVF  + D+  K  + E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  ----TLQQAFDKGKEPLRAFML----GQVRTTDLKTFIDISGYQNINSPEEAPMSVLVPA  177
                +++ A     EPLR+FM      +++T  L     +   +  + +    + ++VPA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  178  FITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlspmiVSLPFKIMLFVLVDGWG  237
            F+ SEL+++FQIGF++++PF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  238  LVLGTL  243
             +L+ L
Sbjct  183  RLLDGL  188

708) fliP in NC_008577


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 72.9 bits (257),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 78/186 (42%), Positives = 129/186 (70%), Gaps = 10/186 (5%)

Query  66   TSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQL  125
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  T+FIMAPVF  + D+  K  + E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  ----TLQQAFDKGKEPLRAFML----GQVRTTDLKTFIDISGYQNINSPEEAPMSVLVPA  177
                +++ A     EPLR+FM      +++T  L     +   +  + +    + ++VPA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  178  FITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlspmiVSLPFKIMLFVLVDGWG  237
            F+ SEL+++FQIGF++++PF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  238  LVMGTL  243
             +++ L
Sbjct  183  RLLDGL  188

709) fliP in NC_008322


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 72.9 bits (257),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 78/186 (42%), Positives = 129/186 (70%), Gaps = 10/186 (5%)

Query  66   TSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQL  125
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  T+FIMAPVF  + D+  K  + E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  ----TLQQAFDKGKEPLRAFML----GQVRTTDLKTFIDISGYQNINSPEEAPMSVLVPA  177
                +++ A     EPLR+FM      +++T  L     +   +  + +    + ++VPA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  178  FITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlspmiVSLPFKIMLFVLVDGWG  237
            F+ SEL+++FQIGF++++PF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  238  LVMGTL  243
             +++ L
Sbjct  183  RLLDGL  188

710) fliP in NC_004347


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 72.9 bits (257),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 78/186 (42%), Positives = 129/186 (70%), Gaps = 10/186 (5%)

Query  66   TSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQL  125
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  T+FIMAPVF  + D+  K  + E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  ----TLQQAFDKGKEPLRAFML----GQVRTTDLKTFIDISGYQNINSPEEAPMSVLVPA  177
                +++ A     EPLR+FM      +++T  L     +   +  + +    + ++VPA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  178  FITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlspmiVSLPFKIMLFVLVDGWG  237
            F+ SEL+++FQIGF++++PF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  238  LVMGTL  243
             +++ L
Sbjct  183  RLLDGL  188

711) fliP in NC_008321


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 72.6 bits (256),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 78/186 (42%), Positives = 129/186 (70%), Gaps = 10/186 (5%)

Query  66   TSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQL  125
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  T+FIMAPVF  + D+  K  + E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  ----TLQQAFDKGKEPLRAFML----GQVRTTDLKTFIDISGYQNINSPEEAPMSVLVPA  177
                +++ A     EPLR+FM      +++T  L     +   +  + +    + ++VPA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  178  FITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlspmiVSLPFKIMLFVLVDGWG  237
            F+ SEL+++FQIGF++++PF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDGW 
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  238  LVMGTL  243
             +++ L
Sbjct  183  RLLDGL  188

712) fliP in NC_008345


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 72.3 bits (255),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 76/185 (42%), Positives = 130/185 (71%), Gaps = 8/185 (4%)

Query  70   TSFTRIIVVLSILRQALGLQQTPSNQVLIGISLFMTFFIMAPVFDKIYAEAVEPYINETM  129
            T+F +I +VL I R+A+G+QQ+P+N  L GI+L  T+FIMAPVF  + ++ V    ++  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  130  TLTQAYDVGK---EPIKTFML----SQVRTTDLQTFIEISGYKDIQSPEQAPMSVVIPAF  182
            T++     GK   EP++TFM     ++++T  L+    +      + + +  + +V+PAF
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAF  123

Query  183  ITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlspmiVSLPFKIMLFVLVDGWGL  242
            + SEL+++FQIGF++++PF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDGW  
Sbjct  124  VLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTR  183

Query  243  VMGTL  247
            +++ L
Sbjct  184  LLDGL  188

713) fliP in NC_014366


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 72.1 bits (254),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 80/188 (43%), Positives = 133/188 (71%), Gaps = 5/188 (2%)

Query  69   TAFTRIIIVFSILRQAIGLQQAPSNQILVGLALFLTLFVMRPVFDEI-NRVAVEPYQAEK  127
            TAF +I +V+ I R+AIG+QQAP+N  L G+AL  TLF+M PVF E+ +RV   P + + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  128  IDGMQAI-QAASGPLRKFMMAQIREADLTLFIELAG---EQDRYHEVDEVPLTIIIPAFI  183
            + +M++  +    PLR FM  ++     T ++E +     ++  +      L +++PAF+
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  184  TSELKTAFQIGfllfipfliiDmvvasvlmamgmmmlspmiislpFKIMLFVFVDGWAMV  243
             SEL+++FQIGFL++IPF++ID++V+++L+A+GM M++PM ISLP+KI+LFV+VDGW+ +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  244  VGSLAASY  251
            +++L  SY
Sbjct  185  LDGLFYSY  192

714) Mrad2831_5050 in NC_010505


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 72.1 bits (254),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 79/197 (41%), Positives = 132/197 (68%), Gaps = 16/197 (8%)

Query  68   LVMATAFTRIVVVLSILRSALGTQTAPPTAVLVSLALFLTAFVMAPTGRAAYSAGIEPL-  126
            +++ TAF +I +VL I R+A+G Q APP   L ++AL  T F+MAP     +S   + + 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPV----FSEMGDRVK  56

Query  127  -IAGRITQAQAFERAS----APFKTFMLRNVREKDLKLFLD-----LAKVPAPKGPEDVG  176
             ++ ++    A E A+     P++TFM RN+       +L+      +K  A K++ D +
Sbjct  57   KLPEHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRD-D  115

Query  177  LEIVTPAFMISELRRAfeigfllfipfliidlVVASVLMAVGMMMVPPATVALPFKLIFF  236
            L +V PAF++SEL+ +F+IGFL++IPF++IDL+V+++L+A+GM MV+P T++LP+K+++F
Sbjct  116  LLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLF  175

Query  237  VLVDGWTLVAGSLVQSY  253
            VLVDGWT + ++L  SY
Sbjct  176  VLVDGWTRLLDGLFYSY  192

715) fliP in NC_009049


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 70.0 bits (246),  Expect = 8e-14, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 131/194 (68%), Gaps = 13/194 (6%)

Query  55   MITCFPF--IVTVLSILRQAIGLQQAPPNMLIVSLALFLTWYVMDPVFTEAWTRGIGPLT  112
            MI C +F  I  VL I R+AIG+QQAPPNM + ++AL  T ++M PVF+E   R +  L 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDR-VKKLP  59

Query  113  RNELDLPQALAAAA----VPFRGFMTGRIDPDT----LAALQALRPGP-AAPPSEAsfsv  163
             ++LD   A+ +A+     P+R FMT  +DPD     L   Q ++P   A  +S   + +
Sbjct  60   -EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  164  lvpsfllsEIQRAFEIGFLIYLPFLIIDlvvsavlmsmgmmmvppavvsmpFKLAFFVVA  223
            +VP+F+LSE+Q +F+IGFLIY+PF++IDL+VS +L+++GM MV+P  +S+P+K+ +FV+ 
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  224  DGWSLISGALVRSY  237
            DGW+ + ++L  SY
Sbjct  179  DGWTRLLDGLFYSY  192

716) Sbal117_3054 in NC_017579


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 69.7 bits (245),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 133/190 (70%), Gaps = 10/190 (5%)

Query  66   TSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDRIYDEGVKPYIEEQL  125
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  T+FIMAPVF  + ++ VK  + E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  126  ----TLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEISGY---KNI-KSPEEAPMSVLIPA  177
                +++ A     EPL+ FM  ++       ++E +     K++   +    + +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  178  FITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlspmiVSLPFKIMLFVLVDGWS  237
            F+ SEL+++FQIGF++++PF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  238  LVLGTLANSF  247
             +L+ L  S+
Sbjct  183  RLLDGLFYSY  192

717) fliP in NC_009052


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 69.7 bits (245),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 133/190 (70%), Gaps = 10/190 (5%)

Query  66   TSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDRIYDEGVKPYIEEQL  125
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  T+FIMAPVF  + ++ VK  + E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  126  ----TLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEISGY---KNI-KSPEEAPMSVLIPA  177
                +++ A     EPL+ FM  ++       ++E +     K++   +    + +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  178  FITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlspmiVSLPFKIMLFVLVDGWS  237
            F+ SEL+++FQIGF++++PF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  238  LVLGTLANSF  247
             +L+ L  S+
Sbjct  183  RLLDGLFYSY  192

718) fliP in NC_009665


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 69.7 bits (245),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 133/190 (70%), Gaps = 10/190 (5%)

Query  66   TSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDRIYDEGVKPYIEEQL  125
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  T+FIMAPVF  + ++ VK  + E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  126  ----TLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEISGY---KNI-KSPEEAPMSVLIPA  177
                +++ A     EPL+ FM  ++       ++E +     K++   +    + +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  178  FITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlspmiVSLPFKIMLFVLVDGWS  237
            F+ SEL+++FQIGF++++PF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  238  LVLGTLANSF  247
             +L+ L  S+
Sbjct  183  RLLDGLFYSY  192

719) fliP in NC_009997


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 69.7 bits (245),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 133/190 (70%), Gaps = 10/190 (5%)

Query  66   TSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDRIYDEGVKPYIEEQL  125
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  T+FIMAPVF  + ++ VK  + E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  126  ----TLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEISGY---KNI-KSPEEAPMSVLIPA  177
                +++ A     EPL+ FM  ++       ++E +     K++   +    + +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  178  FITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlspmiVSLPFKIMLFVLVDGWS  237
            F+ SEL+++FQIGF++++PF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  238  LVLGTLANSF  247
             +L+ L  S+
Sbjct  183  RLLDGLFYSY  192

720) fliP in NC_011663


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 69.7 bits (245),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 133/190 (70%), Gaps = 10/190 (5%)

Query  66   TSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDRIYDEGVKPYIEEQL  125
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  T+FIMAPVF  + ++ VK  + E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  126  ----TLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEISGY---KNI-KSPEEAPMSVLIPA  177
                +++ A     EPL+ FM  ++       ++E +     K++   +    + +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  178  FITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlspmiVSLPFKIMLFVLVDGWS  237
            F+ SEL+++FQIGF++++PF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  238  LVLGTLANSF  247
             +L+ L  S+
Sbjct  183  RLLDGLFYSY  192

721) Sbal678_3069 in NC_016901


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 69.7 bits (245),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 133/190 (70%), Gaps = 10/190 (5%)

Query  66   TSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDRIYDEGVKPYIEEQL  125
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  T+FIMAPVF  + ++ VK  + E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  126  ----TLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEISGY---KNI-KSPEEAPMSVLIPA  177
                +++ A     EPL+ FM  ++       ++E +     K++   +    + +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  178  FITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlspmiVSLPFKIMLFVLVDGWS  237
            F+ SEL+++FQIGF++++PF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  238  LVLGTLANSF  247
             +L+ L  S+
Sbjct  183  RLLDGLFYSY  192

722) fliP in NC_014012


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 69.4 bits (244),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 79/188 (43%), Positives = 133/188 (71%), Gaps = 14/188 (7%)

Query  65   TSFTRIIVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMAPVFDKIYDEAVKPYIAETM  124
            T+F +I +VL I R+AIG+QQ+P+N  L GI++  T+FIMAPVF  + ++ VK  ++E +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  125  D----IEQAFNIGKEPIKTFMLA------QTRLTDLDTFIEISGYQNIDSPEDVPMSVLI  174
            D    +E A +   EP++TFM        QT+L  L+    +   +  D +    + +++
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHL--LENTQRMWPKEMADKASRDDLLLVV  120

Query  175  PSFITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlspmiVSLPFKIMLFVLVDG  234
            P+F+ SEL+++FQIGF++++PF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  235  WSLVMGTL  242
            W+ +++ L
Sbjct  181  WTRLLDGL  188

723) Sbal175_1440 in NC_017571


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 69.4 bits (244),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 133/190 (70%), Gaps = 10/190 (5%)

Query  66   TSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFERIYDEGVKPYIEEQL  125
            T+F +I +VL I R+AIG+QQ+P+N  L G++L  T+FIMAPVF  + ++ VK  + E+L
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKK-LPEHL  62

Query  126  ----TLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEISGY---KNI-KSPEEAPMSVLIPA  177
                +++ A     EPL+ FM  ++       ++E +     K++   +    + +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  178  FITSELKTAFQIGfmlfvpflvldlvvasilmamgmmmlspmiVSLPFKIMLFVLVDGWS  237
            F+ SEL+++FQIGF++++PF+V+DL+V++IL+A+GM M++PM +SLP+KI+LFVLVDGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  238  LVLGTLANSF  247
             +L+ L  S+
Sbjct  183  RLLDGLFYSY  192

724) fliP in NC_010842


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 68.7 bits (241),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 81/193 (42%), Positives = 125/193 (65%), Gaps = 13/193 (6%)

Query  84   TSFTKVVIVFDFVRRALSLQNLPPNQVMMGLALFVTFFIMAPTIGKVNDEALQPYLNGKI  143
            T+F K+ +V+ + R A+++Q+ PPN  + G+AL  T+FIMAP ++ + D   +  L   +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  144  DQSAFMEGSMKH----LRQFMIRQLGKDGTKDVALFLKIGKVQNVKSFEDVPS----YVL  195
            D  A ME++ KH    LR FM R+L+ D   ++   L   +    K   D +S     ++
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHL---LENTQRMWPKEMADKASRDDLLLV  119

Query  196  VPAFMLSEikkafiigiyifipfividliVASALLAMGFMMLPPVMISLPLKLILFILID  255
            VPAF+LSE++ +F IG+ I+IPFIVIDLIV++ LLA+G  M++P+ ISLPLK++LF+L+D
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  256  GWNLLVLELVRSY  268
            GW  L+  L  SY
Sbjct  180  GWTRLLDGLFYSY  192

725) fliP in NC_010602


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 68.7 bits (241),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 81/193 (42%), Positives = 125/193 (65%), Gaps = 13/193 (6%)

Query  84   TSFTKVVIVFDFVRRALSLQNLPPNQVMMGLALFVTFFIMAPTIGKVNDEALQPYLNGKI  143
            T+F K+ +V+ + R A+++Q+ PPN  + G+AL  T+FIMAP ++ + D   +  L   +
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  144  DQSAFMEGSMKH----LRQFMIRQLGKDGTKDVALFLKIGKVQNVKSFEDVPS----YVL  195
            D  A ME++ KH    LR FM R+L+ D   ++   L   +    K   D +S     ++
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHL---LENTQRMWPKEMADKASRDDLLLV  119

Query  196  VPAFMLSEikkafiigiyifipfividliVASALLAMGFMMLPPVMISLPLKLILFILID  255
            VPAF+LSE++ +F IG+ I+IPFIVIDLIV++ LLA+G  M++P+ ISLPLK++LF+L+D
Sbjct  120  VPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVD  179

Query  256  GWNLLVLELVRSY  268
            GW  L+  L  SY
Sbjct  180  GWTRLLDGLFYSY  192

726) fliP in NC_011963


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 65.5 bits (229),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 79/192 (42%), Positives = 126/192 (66%), Gaps = 9/192 (4%)

Query  55   MITCFPF--IVTVLSILRQAIGLQQAPPNMLIVSLALFLTWYVMDPVFTE--AWTKGIAP  110
            MI C +F  I  VL I R+AIG+QQAPPNM + ++AL  T ++M PVF+E   + K ++ 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  111  LTRNELDLPQALAAAAIPFRSFMAGRIDPDT----LAALQALRPGP-AAppsevsfsvlv  165
                   +  A      P+R+FM+  +DPD     L   Q ++P   A  +S   + ++V
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  166  psfllseIQRAFEIGFLIYLPFLIIDlvvsavlmsmgmmmvppavvsmpFKLAFFVVADG  225
            P+F+LSE+Q +F+IGFLIY+PF++IDL+VS +L+++GM MV+P  +S+P+K+ +FV+ DG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  226  WSLISGALVRSY  237
            W+ + ++L  SY
Sbjct  181  WTRLLDGLFYSY  192

727) fliP1 in NC_007493


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 65.2 bits (228),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 131/194 (68%), Gaps = 13/194 (6%)

Query  55   MITCFPF--IVTVLSILRQAIGLQQAPPNMLIVSLALFLTWYVMDPVFTEAWTRGIGPLT  112
            MI C +F  I  VL I R+AIG+QQAPPNM + ++AL  T ++M PVF+E   R +  L 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDR-VKKLP  59

Query  113  RNELDLPQALAAAA----VPFRGFMTGRIDPDT----LAALQALRPGP-AAppsevsfsv  163
             ++LD   A+ +A+     P+R FMT  +DPD     L   Q ++P   A  +S   + +
Sbjct  60   -EHLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  164  lvpsfllseIQRAFEIGFLIYLPFLIIDlvvsavlmsmgmmmvppavvsmpFKLAFFVVA  223
            +VP+F+LSE+Q +F+IGFLIY+PF++IDL+VS +L+++GM MV+P  +S+P+K+ +FV+ 
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  224  DGWSLISGALVRSY  237
            DGW+ + ++L  SY
Sbjct  179  DGWTRLLDGLFYSY  192

728) Calni_1332 in NC_014758


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 65.0 bits (227),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 85/193 (45%), Positives = 133/193 (69%), Gaps = 6/193 (3%)

Query  58   LIMMTSFTRIIIVFSFLRSAMGTQQTPPNQVLIGLALFLTFFIMSPVFSEMNKNA--LAP  115
            +I+ T+F +I +V+ + R+A+G QQ+PPN  L G+AL  T+FIM+PVFSEM      L+ 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  116  YLDGKIAFTDALKEAKKPLRKFMLENTRKKDIMTFLQVSKSPMPKTVDDIPD----MVLL  171
             LD   A   A K+   PLR FM  N        +L+ ++   PK + D +     ++++
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV  120

Query  172  PAFVTSELQTAfeigfllflpfliidfvvssvllsmgmmmlppvmismpFKILLFVLVDG  231
            PAFV SELQ++F+IGFL+++PF++ID++VS++LL++GM M++P+ IS+P+KILLFVLVDG
Sbjct  121  PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG  180

Query  232  WNLIVMSLVKSFM  244
            W  ++ +L  S+M
Sbjct  181  WTRLLDGLFYSYM  193

729) TK90_1168 in NC_013889


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 62.9 bits (219),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 76/184 (42%), Positives = 129/184 (71%), Gaps = 10/184 (5%)

Query  75   FTRILVVLAILRQGLGTTQTPSNQILIGLAFFLTLFVMAPVFDEIYETAVVPYMNEEMGT  134
            F +I +VL I R+++G  Q+P+N  L G+A+  TLF+MAPVF E+     V  + E+++T
Sbjct  7    FLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM--GDRVKKLPEHLDT  64

Query  135  EEVLQAG----VQPLREFMLAH-TRESDIRMFAEINGI---DGFDDADDIPLRLLVPAFV  186
               ++++    V+PLR FM  +   + + +++ + + +   +  D A    L L+VPAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  187  TSELKTAfqigflilipfliiDlvvasvlmsmgmvmlsplIISLPFKVMLFVLVDGWALM  246
             SEL+++FQIGFLI IPF++IDL+V+++L+++GM M++P+ ISLP+K++LFVLVDGW+ +
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  247  MNTL  250
            ++ L
Sbjct  185  LDGL  188

730) fliP in NC_006369


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 62.4 bits (217),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 78/186 (42%), Positives = 131/186 (71%), Gaps = 11/186 (5%)

Query  66   TSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERI  125
            T+F +I +VL I R+AIG+ Q+P N  L GIAL  T F+M+PVF+ + +   +  + E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  DFSLALSNAQK----PLRQFMLNQ-TRKNDLSLFEKFAHNVPKTLDEIP----MSVLIPA  176
            D   A+ +A K    PLR FM  +     +  L+E+  +  PK + + +    + +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  177  FITSELKTAfqigfilflpfliidlvvssllmamgmmmlsplIISLPFKIMLFVMVDGWT  236
            F+ SEL+++FQIGF++++PF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFV+VDGWT
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  237  LVLGSL  242
             +L++L
Sbjct  183  RLLDGL  188

731) fliP in NC_018139


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 62.4 bits (217),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 78/186 (42%), Positives = 131/186 (71%), Gaps = 11/186 (5%)

Query  66   TSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERI  125
            T+F +I +VL I R+AIG+ Q+P N  L GIAL  T F+M+PVF+ + +   +  + E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  DFSLALSNAQK----PLRQFMLNQ-TRKNDLSLFEKFAHNVPKTLDEIP----MSVLIPA  176
            D   A+ +A K    PLR FM  +     +  L+E+  +  PK + + +    + +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  177  FITSELKTAfqigfilflpfliidlvvssllmamgmmmlsplIISLPFKIMLFVMVDGWT  236
            F+ SEL+++FQIGF++++PF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFV+VDGWT
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  237  LVLGSL  242
             +L++L
Sbjct  183  RLLDGL  188

732) fliP in NC_017464


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 61.6 bits (214),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 135/190 (72%), Gaps = 10/190 (5%)

Query  56   IIMTTSYLRIIIVFHFLKSALGTQQMPPGQLLAGVALFITFFVMAPTWNKVNQ--DALKP  113
            +I+ T++L+I +V+ + ++A+G QQ PP   L G+AL  T+F+MAP  + + +    L  
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  114  LLDEKIGVEEAYNKGIEPIREFMFKHV-RDEDLELFVSMA-----NMSRPNNRNELPTYI  167
             LD   ++E A +  +EP+R FM +++  D + +L+ +       +M+   +R++L   +
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDL--LL  118

Query  168  VVPAFVLSELRTgfiigfflfipfiMVDliissilmsmgmmmlppmlislpFKILLFILV  227
            VVPAFVLSEL++GF IGF+++IPFI++DLI+S+IL+++GM M++PM ISLP+KILLF+LV
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  228  DGWNLIVGSV  237
            DGW  +++++
Sbjct  179  DGWTRLLDGL  188

733) fliP in NC_018140


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 61.6 bits (214),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 78/186 (42%), Positives = 130/186 (70%), Gaps = 11/186 (5%)

Query  66   TSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERI  125
            T+F +I +VL I R+AIG+ Q+P N  L GIAL  T F+M+PVF+ + +   +  + E++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--LPEHL  62

Query  126  DFSLALSNAQK----PLRQFMLNQ-TRKNDLSLFEKFANNVPKTLDEIP----MSVLIPA  176
            D   A+ +A K    PLR FM  +     +  L+E+     PK + + +    + +++PA
Sbjct  63   DTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  177  FITSELKTAfqigfilflpfliidlvvssllmamgmmmlsplIISLPFKIMLFVMVDGWT  236
            F+ SEL+++FQIGF++++PF++IDL+VS++L+A+GM M++P+ ISLP+KI+LFV+VDGWT
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  237  LVLGSL  242
             +L++L
Sbjct  183  RLLDGL  188

734) EUBELI_00826 in NC_012778


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 61.6 bits (214),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 130/192 (68%), Gaps = 10/192 (5%)

Query  83   TSFTRIVIVLHFTRAAIGTQTVPPNQVIIGLSLFLTFFVMSPTFTEIYDSALKPLSNNE-  141
            T+F +I +VL +TR AIG Q  PPN  + G++L  T+F+M+P F+E+ +  +K L+++  
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLD  63

Query  142  --ISVEEAYETGVKPLKTFMLK----QTSTKDLDTFFKIAGYEEGSVTSEDDISMTVLVP  195
               ++E A    V PL+TFM +    +  T  L+   ++   E +  +S DD  + ++VP
Sbjct  64   TFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDD--LLLVVP  121

Query  196  SFIISELRIAfiigfliyipfiiiDmvvsstlmsmgmmmlppttISAPFKILLFVMADGW  255
            +F++SEL+ +F IGFLIYIPFI+ID++VS+ L+++GM M++P TIS P+KILLFV+ DGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  256  NLIIGNLITTFK  267
              +++ L+ ++ 
Sbjct  182  TRLLDGLFYSYM  193

735) MROS_2143 in NC_018178


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 60.0 bits (208),  Expect = 9e-11, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  65   VIMTTAYLRIIIVFHFLKSALGTQQMPPSQLLAGIALFITFFIMAPTWNRVND--DALSP  122
            +I+ TA+L+I +V+ + ++A+G QQ PP+  L GIAL  T+FIMAP  + + D    L+ 
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE  60

Query  123  LMDNKISVEEAYNKGIEPIREFMFKN-TREEDLELFVGL-----SNLPRPETRNDVPTYV  176
             +D   ++E A +  +EP+R FM +N   + + +L+         +++   +R+D+   +
Sbjct  61   HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDL--LL  118

Query  177  LIPAFVLSELRigfiigfflfipflMVDmiissilmsmgmmmmppmmislpFKILLFILV  236
            ++PAFVLSEL+ GF IGF+++IPF+++D+I+S+IL+++GM M++PM ISLP+KILLF+LV
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  237  DGWNLIIGSL  246
            DGW  ++++L
Sbjct  179  DGWTRLLDGL  188

736) fliP in NC_008702


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 58.2 bits (201),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 80/192 (42%), Positives = 134/192 (70%), Gaps = 22/192 (11%)

Query  75   TSFTRIIIVFSLLRQAIGTQTSPPNQVLLGLALFLTFFIMAPV----ADKV-----YLEA  125
            T+F +I +V+ + R+AIG Q +PPN  L G+AL  T+FIMAPV    +D+V      L++
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  126  YQPMSEGRISFEQALERATVPVKAFMLKQVREPDLS--LFTGLAKHPPVEKAEDLP---M  180
            + +M       E A  +   P+++FM +++ +PD+   L+    +  P E A+  +   +
Sbjct  65   FAAM-------ESAGKHVVEPLRTFMTRNL-DPDIQTHLLENTQRMWPKEMADKASRDDL  116

Query  181  RVVVPAFVTSELKTAfqigfivfipfiiiDmvvasvlmsmgmmmmspvivsLPFKIMLFV  240
             +VVPAFV SEL+++FQIGF+++IPFI+ID++V+++L+++GM M++P+ +SLP+KI+LFV
Sbjct  117  LLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFV  176

Query  241  LVDGWTLLIGSL  252
            LVDGWT L+++L
Sbjct  177  LVDGWTRLLDGL  188

737) Thivi_0368 in NC_018012


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 56.8 bits (196),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 82/189 (44%), Positives = 133/189 (71%), Gaps = 9/189 (4%)

Query  63   SFTRIIIVLGILRQGLGTSQTPSNQIllglalfltlFVMAPVFQEIYDTAA-IPYMEEKL  121
            +F +I +VL I R+++G  Q+P+N  L G+AL  TLF+MAPVF E+ D    +P   + +
Sbjct  6    AFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDTF  65

Query  122  GTEEALGK-AIKPLRTFMLAQ-TRETDLSLFAEIRGL---DGFDSPDAIPLNLLVPAFVI  176
            ++ E+ GK  + PLRTFM  +   + +  L+ + + +   +  D +    L L+VPAFV+
Sbjct  66   AAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFVL  125

Query  177  SELKTAfqigflilipfliiDlvvasvlmsmgmmmlspmIISLPFKIMLFVLVDGWSLVM  236
            SEL+++FQIGFLI IPF++IDL+V+++L+++GM M++PM ISLP+KI+LFVLVDGW+ ++
Sbjct  126  SELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRLL  185

Query  237  GTLAQSFFT  245
            + L   F++
Sbjct  186  DGL---FYS  191

738) Q7C_1257 in NC_017856


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 53.4 bits (183),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 78/191 (41%), Positives = 128/191 (68%), Gaps = 13/191 (6%)

Query  62   TSFTRIIIVMAILRQALGVQSTPSNQVLLGLALFLTIFIMHPVFGSAYENGVK--PYMD-  118
            T+F +I +V+ I R+A+GVQ +P+N  L G+AL  T+FIM PVF+   +   K    +D 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  119  -GGMQPTEAITAASAPFRDFMLAQ-TRETDIALFAEIGGYAPLQSAEDVPFS---LLLPA  173
             ++M+++        P+R FM  +   + +  L+ +     P + A+  +     L++PA
Sbjct  65   FAAMESAG--KHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPA  122

Query  174  FVTSELKTAFQigflifipfliidlvvasvlmamgmmmlspmlislpFKLMLFVLIDGWA  233
            FV SEL+++FQIGFLI+IPF++IDL+V+++L+A+GM M++PM ISLP+K++LFVL+DGW+
Sbjct  123  FVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWT  182

Query  234  LLMGTLASSFY  244
             L++ L   FY
Sbjct  183  RLLDGL---FY  190

739) Alvin_2932 in NC_013851


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 52.6 bits (180),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 83/197 (43%), Positives = 139/197 (71%), Gaps = 15/197 (7%)

Query  62   LIMMTSFTRIIIVLGILRQGLGTTQTPSNQIllglalfltlFVMSPIFQEIYDTAIQPYM  121
            +I+ T+F +I +VL I R+++G  Q+P+N  L G+AL  TLF+M+P+F E+ D   +  +
Sbjct  1    MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKK--L  58

Query  122  EEQLGTEEALAKA----VKPLRTFMLAQTRESDLA--LFAGIRGI---DGFESPDDIPLT  172
             E+L+T  A+  A    V PLRTFM ++  ++D+   L+   + +   +  + +    L 
Sbjct  59   PEHLDTFAAMESAGKHVVEPLRTFM-TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLL  117

Query  173  LLIPSFVISELKTAfqigflilipfliiDlvvasvlmsmgmmmlspliislpFKLMLFVL  232
            L++P+FV+SEL+++FQIGFLI IPF++IDL+V+++L+++GM M++P+ ISLP+K++LFVL
Sbjct  118  LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVL  177

Query  233  VDGWSLLLGTLARSFYT  249
            VDGW+ LL+ L   FY+
Sbjct  178  VDGWTRLLDGL---FYS  191

740) Dsui_1746 in NC_016616


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 51.6 bits (176),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 132/190 (70%), Gaps = 18/190 (9%)

Query  67   TAFTRIIIVLSMLRHAMGLQTTPPNQVLLGLALFLTFFVMSPV----ADRVYTEAYVPLA  122
            TAF +I +VL + R+A+G+Q +PPN  L G+AL  T+F+M+PV    +DRV       L+
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRV-----KKLP  59

Query  123  ENKITFLQALEKAE----QPVRGFMLKQ-TREADIALFAGFAGIKNIESPDKVP---LRI  174
            E+  TF  A+E A     +P+R FM ++   + +  L+     +   E +DK +   L +
Sbjct  60   EHLDTF-AAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLL  118

Query  175  LVPAFVTSELKTAfqigfiifipfliiDmvvgsvlmsmgmmmmspvmvampFKMMLFVLV  234
            +VPAFV SEL+++FQIGF+I+IPF++ID++V+++L+++GM M++P+ +++P+K++LFVLV
Sbjct  119  VVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLV  178

Query  235  DGWHLVLGSL  244
            DGW  +L++L
Sbjct  179  DGWTRLLDGL  188

741) Anae109_0745 in NC_009675


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 50.5 bits (172),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 79/188 (43%), Positives = 128/188 (69%), Gaps = 2/188 (1%)

Query  36   TSFLKIVVVLSIARSALGAPQVPPNtavtglalvltalvMAPvgeravaamraapaghgv  95
            T+FLKI +VL I+R+A+G  Q PPN A+ G+AL  T ++MAPV       ++  P   + 
Sbjct  5    TAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPEHLDT  64

Query  96   aGTLAQLERGS-DPLRGfllrfaraddraafvdvarrlrGPDAAPPAERD-LAVLAPAFV  153
             +++    +   +PLR F+ R   +D ++ +++ ++R++  + A  A RD L ++ PAFV
Sbjct  65   FAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVPAFV  124

Query  154  VSELRRAFTIGflvfvpflvvdlvvsnvllalGLTQLSPTSIALPFKLLLFVAVDGWKLL  213
            +SEL+ +F IGFL+++PF+V+DL+VSN+LLALG+  ++P +I+LP+K+LLFV VDGW  L
Sbjct  125  LSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGWTRL  184

Query  214  ARALALSY  221
              +L  SY
Sbjct  185  LDGLFYSY  192

742) R2APBS1_2987 in NC_020541


> AY597283|16|G16|51103202|AAT96343.1|Pseudomonas_viridiflava_RMX3.1b|+|15655..16236|hrcR|-|HrcR
Length=193

 Score = 49.2 bits (167),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 85/193 (45%), Positives = 129/193 (67%), Gaps = 17/193 (8%)

Query  67   SFTRIIIVLGFLRQALGTQSTPPNQVllglalfltlFVMSPVLNKSYADGVK---PYMDG  123
            +F +I +VL + R+A+G Q +PPN  L G+AL  TLF+M+PV++   +D VK     +D 
Sbjct  6    AFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEM-GDRVKKLPEHLDT  64

Query  124  qlaaeqalpaasapFKQFMLDQTREADLALFTRLAGE------KPYAAKAD-VPFKVAMP  176
              A E A      P++ FM   TR+ D  + T+L  +      K  A KA    + + +P
Sbjct  65   FAAMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVVP  121

Query  177  AFLTSELKTAFQMGfllfipfliiDLvvasvlmsmgmmmvspmiisLPFKIMLFVLVDGW  236
            AF+ SEL+++FQ+GFL++IPF++IDL+V+++L+++GM MV+PM ISLP+KI+LFVLVDGW
Sbjct  122  AFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDGW  181

Query  237  TLLLGTLAGSFYT  249
            T LL+ L   FY+
Sbjct  182  TRLLDGL---FYS  191