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PAthogenisity Island DataBase (PAI DB)

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Homologs of S13 gene of AY275838

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ROD_50021
( YP_003368365.1 )

hypothetical protein

NC_013716
(Citrobacter rodentium ICC168)

1e-39

2) O3M_04345
( YP_006768548.1 )

hypothetical protein

NC_018650
(Escherichia coli 2009EL-2050)

5e-37

3) O3O_21345
( YP_006782655.1 )

hypothetical protein

NC_018661
(Escherichia coli 2009EL-2071)

5e-37

4) O3K_04305
( YP_006777591.1 )

hypothetical protein

NC_018658
(Escherichia coli 2011C-3493)

5e-37

5) EC042_4549
( YP_006098826.1 )

hypothetical protein

NC_017626
(Escherichia coli 042)

5e-37

6) EC042_4580
( YP_006098851.1 )

hypothetical protein

NC_017626
(Escherichia coli 042)

4e-25

• Sequence Alignments

1) ROD_50021 in NC_013716


> AY275838|16|G16|33440450|AAQ19136.1|Escherichia_coli_CL3|+|20778..21083|S13|-|hypothetical 
protein
Length=101

 Score =  155 bits (573),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 93/101 (93%), Positives = 97/101 (97%), Gaps = 0/101 (0%)

Query  1    MTLLFHDIQMHLFYLNHSPHSWHWNVRFRPQEAVYIGNDTCHITITCNQSGFHLTRDGQR  60
            MTLLFHDIQM+LFYLNHSPHSWHWNVRFRPQEAVY GNDTCHITITCNQSGFHLTR GQR
Sbjct  1    MTLLFHDIQMRLFYLNHSPHSWHWNVRFRPQEAVYTGNDTCHITITCNQSGFHLTRYGQR  60

Query  61   LFTERYIRNLNELLPVLKRRWDVTSAIIRAVEYLSRVPVLH  101
            +FTERYIRNLNELLPVLKRRWDVT+AII AVEYLS+VPV H
Sbjct  61   VFTERYIRNLNELLPVLKRRWDVTPAIICAVEYLSWVPVSH  101

2) O3M_04345 in NC_018650


> AY275838|16|G16|33440450|AAQ19136.1|Escherichia_coli_CL3|+|20778..21083|S13|-|hypothetical 
protein
Length=101

 Score =  147 bits (540),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 90/101 (90%), Positives = 92/101 (92%), Gaps = 0/101 (0%)

Query  2    MNPLFSDIQMRLFHLNHSPYSWYWNVRFRPQEAVYIGNDTCHITITCNQSGFHLTRDGQR  61
            M  LF DIQMRLF LNHSP SW WNVRFRPQEAVY GNDTCHITITCNQSGFHLTR GQR
Sbjct  1    MTLLFHDIQMRLFYLNHSPHSWHWNVRFRPQEAVYTGNDTCHITITCNQSGFHLTRYGQR  60

Query  62   LFTERYIRNLNELLPVLKRRWDVTPAIIRAVEYLSRVPVSH  102
            +FTERYIRNLNELLPVLKRRWDVTPAII AVEYLS+VPVSH
Sbjct  61   VFTERYIRNLNELLPVLKRRWDVTPAIICAVEYLSWVPVSH  101

3) O3O_21345 in NC_018661


> AY275838|16|G16|33440450|AAQ19136.1|Escherichia_coli_CL3|+|20778..21083|S13|-|hypothetical 
protein
Length=101

 Score =  147 bits (540),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 90/101 (90%), Positives = 92/101 (92%), Gaps = 0/101 (0%)

Query  2    MNPLFSDIQMRLFHLNHSPYSWYWNVRFRPQEAVYIGNDTCHITITCNQSGFHLTRDGQR  61
            M  LF DIQMRLF LNHSP SW WNVRFRPQEAVY GNDTCHITITCNQSGFHLTR GQR
Sbjct  1    MTLLFHDIQMRLFYLNHSPHSWHWNVRFRPQEAVYTGNDTCHITITCNQSGFHLTRYGQR  60

Query  62   LFTERYIRNLNELLPVLKRRWDVTPAIIRAVEYLSRVPVSH  102
            +FTERYIRNLNELLPVLKRRWDVTPAII AVEYLS+VPVSH
Sbjct  61   VFTERYIRNLNELLPVLKRRWDVTPAIICAVEYLSWVPVSH  101

4) O3K_04305 in NC_018658


> AY275838|16|G16|33440450|AAQ19136.1|Escherichia_coli_CL3|+|20778..21083|S13|-|hypothetical 
protein
Length=101

 Score =  147 bits (540),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 90/101 (90%), Positives = 92/101 (92%), Gaps = 0/101 (0%)

Query  2    MNPLFSDIQMRLFHLNHSPYSWYWNVRFRPQEAVYIGNDTCHITITCNQSGFHLTRDGQR  61
            M  LF DIQMRLF LNHSP SW WNVRFRPQEAVY GNDTCHITITCNQSGFHLTR GQR
Sbjct  1    MTLLFHDIQMRLFYLNHSPHSWHWNVRFRPQEAVYTGNDTCHITITCNQSGFHLTRYGQR  60

Query  62   LFTERYIRNLNELLPVLKRRWDVTPAIIRAVEYLSRVPVSH  102
            +FTERYIRNLNELLPVLKRRWDVTPAII AVEYLS+VPVSH
Sbjct  61   VFTERYIRNLNELLPVLKRRWDVTPAIICAVEYLSWVPVSH  101

5) EC042_4549 in NC_017626


> AY275838|16|G16|33440450|AAQ19136.1|Escherichia_coli_CL3|+|20778..21083|S13|-|hypothetical 
protein
Length=101

 Score =  146 bits (539),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 90/101 (90%), Positives = 92/101 (92%), Gaps = 0/101 (0%)

Query  1    MNPLFSDIQMRLFHLNHSPYSWYWNVRFRPQEAVYIGNDTCHITITCNQSGFHLTRDGQR  60
            M  LF DIQMRLF LNHSP SW WNVRFRPQEAVY GNDTCHITITCNQSGFHLTR GQR
Sbjct  1    MTLLFHDIQMRLFYLNHSPHSWHWNVRFRPQEAVYTGNDTCHITITCNQSGFHLTRYGQR  60

Query  61   LFTERYIRNLNELLPVLKRRWDVTPAIIRAVEYLSRVPVSH  101
            +FTERYIRNLNELLPVLKRRWDVTPAII AVEYLS+VPVSH
Sbjct  61   VFTERYIRNLNELLPVLKRRWDVTPAIICAVEYLSWVPVSH  101

6) EC042_4580 in NC_017626


> AY275838|16|G16|33440450|AAQ19136.1|Escherichia_coli_CL3|+|20778..21083|S13|-|hypothetical 
protein
Length=101

 Score =  107 bits (389),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 64/84 (77%), Positives = 73/84 (87%), Gaps = 0/84 (0%)

Query  3   ESSPYSWFWNVRFRAMEAVYIGNDVCHITITCNQSGFHLTKNGVRVLTERNIRSLNELLP  62
           + SP SW WNVRFR+ EAVY GND CHITITCNQSGFHLT+ G RV+TER IR+LNELLP
Sbjct  16  NHSPHSWHWNVRFRPQEAVYTGNDTCHITITCNQSGFHLTRYGQRVFTERYIRNLNELLP  75

Query  63  LLRRRWDVTPAIILAVEYLLRVSV  86
           +L+RRWDVTPAII AVEYL +V+V
Sbjct  76  VLKRRWDVTPAIICAVEYLSWVPV  99