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PAthogenisity Island DataBase (PAI DB)

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Homologs of HP0536 gene of AB120421

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) cagP
( NP_223202.1 )

cag island protein

NC_000921
(Helicobacter pylori J99)

6e-33

100

2) HP0536
( NP_207332.1 )

cag pathogenicity island protein (cag15)

NC_000915
(Helicobacter pylori 26695)

2e-32

3) HMPREF0462_0881
( YP_005785448.1 )

cag pathogenicity island protein

NC_017375
(Helicobacter pylori 83)

2e-32

4) HMPREF4655_21066
( YP_005770153.1 )

cag pathogenicity island protein

NC_017360
(Helicobacter pylori 35A)

2e-32

5) cagP
( YP_005793176.1 )

cag pathogenicity island protein P

NC_017382
(Helicobacter pylori 51)

5e-32

6) HPKB_0807
( YP_005762315.1 )

cag island protein

NC_017354
(Helicobacter pylori 52)

5e-32

7) HPSH_04210
( YP_001910307.1 )

cag pathogenicity island protein CagP

NC_010698
(Helicobacter pylori Shi470)

1e-31

8) HPV225_0539
( YP_005763470.1 )

cag pathogenicity island protein (cagP)

NC_017355
(Helicobacter pylori v225d)

1e-31

9) cagP
( YP_002301177.1 )

cag pathogenicity island protein P

NC_011498
(Helicobacter pylori P12)

8e-31

• Sequence Alignments

1) cagP in NC_000921


> AB120421|16|G16|46091482|BAD13924.1|Helicobacter_pylori_F80|-|21046..21390|HP0536|-|cag 
pathogenicity island protein
Length=114

 Score =  133 bits (487),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 114/114 (100%), Positives = 114/114 (100%), Gaps = 0/114 (0%)

Query  1    MKRPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIALFSYGAGVILVYPIL  60
            MKRPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIALFSYGAGVILVYPIL
Sbjct  1    MKRPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIALFSYGAGVILVYPIL  60

Query  61   FLFALIIKPsffyyttyllllvslsiiskyyllsHANFTMKLIMLMTQWQNWFL  114
            FLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSHANFTMKLIMLMTQWQNWFL
Sbjct  61   FLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSHANFTMKLIMLMTQWQNWFL  114

2) HP0536 in NC_000915


> AB120421|16|G16|46091482|BAD13924.1|Helicobacter_pylori_F80|-|21046..21390|HP0536|-|cag 
pathogenicity island protein
Length=114

 Score =  131 bits (482),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 112/114 (99%), Positives = 114/114 (100%), Gaps = 0/114 (0%)

Query  1    MKRPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLVALFSYGAGVILVYPIL  60
            MKRPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFL+ALFSYGAGVILVYPIL
Sbjct  1    MKRPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIALFSYGAGVILVYPIL  60

Query  61   FLFALIIKPsffyyttyllllvslsiiskyyllsHANFTMKLIILMTQWQNWFL  114
            FLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSHANFTMKLI+LMTQWQNWFL
Sbjct  61   FLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSHANFTMKLIMLMTQWQNWFL  114

3) HMPREF0462_0881 in NC_017375


> AB120421|16|G16|46091482|BAD13924.1|Helicobacter_pylori_F80|-|21046..21390|HP0536|-|cag 
pathogenicity island protein
Length=114

 Score =  131 bits (481),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 112/114 (99%), Positives = 114/114 (100%), Gaps = 0/114 (0%)

Query  1    MKQPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIGLFSYGAGVILVYPIL  60
            MK+PISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLI+LFSYGAGVILVYPIL
Sbjct  1    MKRPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIALFSYGAGVILVYPIL  60

Query  61   FLFALIIKPsffyyttyllllvslsiiskyyllsHANFTMKLIMLMTQWQNWFL  114
            FLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSHANFTMKLIMLMTQWQNWFL
Sbjct  61   FLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSHANFTMKLIMLMTQWQNWFL  114

4) HMPREF4655_21066 in NC_017360


> AB120421|16|G16|46091482|BAD13924.1|Helicobacter_pylori_F80|-|21046..21390|HP0536|-|cag 
pathogenicity island protein
Length=114

 Score =  131 bits (480),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 109/114 (96%), Positives = 114/114 (100%), Gaps = 0/114 (0%)

Query  1    MKQPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIGLFSYGAGVILVYPIL  60
            MK+PISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLI+LFSYGAGVILVYPIL
Sbjct  1    MKRPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIALFSYGAGVILVYPIL  60

Query  61   FLFALIIKPsffyyttyllllvslsviskyyllNHANFTMKLIILMTQWQNWFL  114
            FLFALIIKPSFFYYTTYLLLLVSLS+ISKYYLL+HANFTMKLI+LMTQWQNWFL
Sbjct  61   FLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSHANFTMKLIMLMTQWQNWFL  114

5) cagP in NC_017382


> AB120421|16|G16|46091482|BAD13924.1|Helicobacter_pylori_F80|-|21046..21390|HP0536|-|cag 
pathogenicity island protein
Length=114

 Score =  130 bits (476),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 110/114 (97%), Positives = 113/114 (99%), Gaps = 0/114 (0%)

Query  1    MEQPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIGLFSYGAGVILVYPIL  60
            M +PISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLI+LFSYGAGVILVYPIL
Sbjct  1    MKRPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIALFSYGAGVILVYPIL  60

Query  61   FLFALIIKPsffyyttyllllvslsviskyyllsHANFTMKLIMLMTQWQNWFL  114
            FLFALIIKPSFFYYTTYLLLLVSLS+ISKYYLLSHANFTMKLIMLMTQWQNWFL
Sbjct  61   FLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSHANFTMKLIMLMTQWQNWFL  114

6) HPKB_0807 in NC_017354


> AB120421|16|G16|46091482|BAD13924.1|Helicobacter_pylori_F80|-|21046..21390|HP0536|-|cag 
pathogenicity island protein
Length=114

 Score =  130 bits (476),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 110/114 (97%), Positives = 113/114 (99%), Gaps = 0/114 (0%)

Query  1    MKQPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIGLFSYGAGVILVYPIL  60
            MK+PISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLI+LFSYGAGVILVYPIL
Sbjct  1    MKRPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIALFSYGAGVILVYPIL  60

Query  61   FLFALITKPsffyyttyllllvslsviskyyllsHANFTMKLIMLMTQWQNWFL  114
            FLFALI KPSFFYYTTYLLLLVSLS+ISKYYLLSHANFTMKLIMLMTQWQNWFL
Sbjct  61   FLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSHANFTMKLIMLMTQWQNWFL  114

7) HPSH_04210 in NC_010698


> AB120421|16|G16|46091482|BAD13924.1|Helicobacter_pylori_F80|-|21046..21390|HP0536|-|cag 
pathogenicity island protein
Length=114

 Score =  129 bits (471),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 109/114 (96%), Positives = 113/114 (99%), Gaps = 0/114 (0%)

Query  1    MKQPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIGLFSYGAGVILVYPIL  60
            MK+PISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLI+LFSYGAGVILVYPIL
Sbjct  1    MKRPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIALFSYGAGVILVYPIL  60

Query  61   FLFALITKPsffyyttyllllvslsviskyyllsHANFTMKLIILMTQWQNWFL  114
            FLFALI KPSFFYYTTYLLLLVSLS+ISKYYLLSHANFTMKLI+LMTQWQNWFL
Sbjct  61   FLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSHANFTMKLIMLMTQWQNWFL  114

8) HPV225_0539 in NC_017355


> AB120421|16|G16|46091482|BAD13924.1|Helicobacter_pylori_F80|-|21046..21390|HP0536|-|cag 
pathogenicity island protein
Length=114

 Score =  129 bits (471),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 109/114 (96%), Positives = 113/114 (99%), Gaps = 0/114 (0%)

Query  1    MKQPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIGLFSYGAGVILVYPIL  60
            MK+PISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLI+LFSYGAGVILVYPIL
Sbjct  1    MKRPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIALFSYGAGVILVYPIL  60

Query  61   FLFALITKPsffyyttyllllvslsviskyyllsHANFTMKLIILMTQWQNWFL  114
            FLFALI KPSFFYYTTYLLLLVSLS+ISKYYLLSHANFTMKLI+LMTQWQNWFL
Sbjct  61   FLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSHANFTMKLIMLMTQWQNWFL  114

9) cagP in NC_011498


> AB120421|16|G16|46091482|BAD13924.1|Helicobacter_pylori_F80|-|21046..21390|HP0536|-|cag 
pathogenicity island protein
Length=114

 Score =  126 bits (461),  Expect = 8e-31, Method: Compositional matrix adjust.
 Identities = 112/117 (96%), Positives = 114/117 (98%), Gaps = 3/117 (2%)

Query  1    MKRPISKLSKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIALFSYGAGVILVY  60
            MKRPISKL   KQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIALFSYGAGVILVY
Sbjct  1    MKRPISKL---KQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIALFSYGAGVILVY  57

Query  61   PILFLFALIIKPsffyyttyllllvslsiiskyyllsHAKFTMKLIILMTQWQNWFL  117
            PILFLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSHA+FTMKLI+LMTQWQNWFL
Sbjct  58   PILFLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSHANFTMKLIMLMTQWQNWFL  114