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PAthogenisity Island DataBase (PAI DB)

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Homologs of S12 gene of AY275838

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) EC042_4548
( YP_006098825.1 )

hypothetical protein

NC_017626
(Escherichia coli 042)

0.0

2) EC55989_3316
( YP_002404283.1 )

UvrD/REP helicase

NC_011748
(Escherichia coli 55989)

0.0

3) ROD_50011
( YP_003368364.1 )

DNA helicase

NC_013716
(Citrobacter rodentium ICC168)

0.0

4) EC042_3187
( YP_006097478.1 )

putative helicase

NC_017626
(Escherichia coli 042)

0.0

5) O3M_04340
( YP_006768547.1 )

UvrD/REP helicase

NC_018650
(Escherichia coli 2009EL-2050)

0.0

6) O3O_21350
( YP_006782654.1 )

UvrD/REP helicase

NC_018661
(Escherichia coli 2009EL-2071)

0.0

7) O3K_04300
( YP_006777590.1 )

UvrD/REP helicase

NC_018658
(Escherichia coli 2011C-3493)

0.0

8) YpsIP31758_0807
( YP_001399791.1 )

hypothetical protein

NC_009708
(Yersinia pseudotuberculosis IP 31758)

5e-125

9) Q7A_2175
( YP_006296634.1 )

nuclease-like protein

NC_017857
(Methylophaga sp. JAM1)

4e-116

10) Tgr7_1772
( YP_002513841.1 )

DNA helicase II

NC_011901
(Thioalkalivibrio sulfidophilus HL-EbGR7)

7e-114

11) CJA_0632
( YP_001981153.1 )

putative DNA helicase II

NC_010995
(Cellvibrio japonicus Ueda107)

1e-110

12) Nhal_1170
( YP_003526720.1 )

NERD domain-containing protein

NC_013960
(Nitrosococcus halophilus Nc 4)

1e-108

13) rep [C]
( YP_007218405.1 )

DNA helicase II; NERD domain-containing protein

NC_019902
(Thioalkalivibrio nitratireducens DSM 14787)

9e-108

14) ROD_48331
( YP_003368221.1 )

hypothetical protein

NC_013716
(Citrobacter rodentium ICC168)

4e-106

15) SEEB0189_19710
( YP_008310223.1 )

type I restriction endonuclease

NC_021844
(Salmonella enterica CFSAN000189)

1e-105

16) R2APBS1_1138
( YP_007589528.1 )

nuclease-like protein

NC_020541
(Rhodanobacter sp. 2APBS1)

9e-106

17) SG4357
( YP_002229051.1 )

type I restriction enzyme

NC_011274
(Salmonella enterica 287/91)

2e-105

18) SeD_A4939
( YP_002218401.1 )

DNA helicase II

NC_011205
(Salmonella enterica CT_02021853)

2e-105

19) SEN4292
( YP_002246307.1 )

type I restriction enzyme

NC_011294
(Salmonella enterica P125109)

2e-105

20) SPUCDC_4504
( YP_008484010.1 )

putative Type I restriction enzyme

NC_022221
(Salmonella enterica CDC1983-67)

1e-104

21) SPUL_4517
( YP_005215548.1 )

putative Type I restriction enzyme

NC_016831
(Salmonella enterica RKS5078)

1e-104

22) Pnap_3974
( YP_984190.1 )

hypothetical protein

NC_008781
(Polaromonas naphthalenivorans CJ2)

3e-103

23) Daci_3682
( YP_001564699.1 )

NERD domain-containing protein

NC_010002
(Delftia acidovorans SPH-1)

7e-102

24) Rfer_4005
( YP_525234.1 )

hypothetical protein

NC_007908
(Rhodoferax ferrireducens T118)

2e-101

25) RPSI07_mp0091
( YP_003749105.1 )

putative helicase protein

NC_014310
(Ralstonia solanacearum PSI07)

2e-101

26) RSp0128
( NP_521689.1 )

hypothetical protein

NC_003296
(Ralstonia solanacearum GMI1000)

7e-100

27) Acav_4546
( YP_004236996.1 )

NERD domain-containing protein

NC_015138
(Acidovorax avenae ATCC 19860)

8e-100

28) Aave_4619
( YP_972930.1 )

hypothetical protein

NC_008752
(Acidovorax citrulli AAC00-1)

1e-98

29) F504_3579
( YP_008237311.1 )

hypothetical protein

NC_021745
(Ralstonia solanacearum FQY_4)

1e-98

30) Daro_1108
( YP_284334.1 )

hypothetical protein

NC_007298
(Dechloromonas aromatica RCB)

2e-97

• Sequence Alignments

1) EC042_4548 in NC_017626


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  965 bits (3656),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 589/595 (99%), Positives = 592/595 (99%), Gaps = 0/595 (0%)

Query  1    MAKLINVSASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  60
            MAKLIN+SASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  120
            VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  180
            GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  189

Query  181  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILARNIGDGHRV  240
            +QKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILARNIGDGHRV
Sbjct  190  QQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILARNIGDGHRV  249

Query  241  IHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECIEARGLASRVTVSHFH  300
            IHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECIEARGLASRVTVSHFH
Sbjct  250  IHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECIEARGLASRVTVSHFH  309

Query  301  SWCASMVKRHGIKVTADRKEYPDKCFSTLEEAVNSGKITRTGYDAVLVDEGHDFDSRWLA  360
            SWCASMVKRHGIKVTADRKEYPDKCFS+LEEAVNSGKITRTGYDAVLVDEGHDFDSRWLA
Sbjct  310  SWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGYDAVLVDEGHDFDSRWLA  369

Query  361  LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVNYRNPKRILH  420
            LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVNYRNPKRILH
Sbjct  370  LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVNYRNPKRILH  429

Query  421  FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADWLEKRHVLCG  480
            FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADWLEKRH LCG
Sbjct  430  FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADWLEKRHALCG  489

Query  481  HWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTYSRRKDVVHLLTYQSSKGLE  540
            HWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTYSRRKDVVHLLTYQSSKGLE
Sbjct  490  HWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTYSRRKDVVHLLTYQSSKGLE  549

Query  541  FPYVAVINASFVHSGAADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA  595
            FPYVAVINASFV SG ADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA
Sbjct  550  FPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA  604

2) EC55989_3316 in NC_011748


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  965 bits (3658),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 590/595 (99%), Positives = 592/595 (99%), Gaps = 0/595 (0%)

Query  1    MAKLINVSASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  60
            MAKLIN+SASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  120
            VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  180
            GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  189

Query  181  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILARNIGDGHRV  240
            +QKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILARNIGDGHRV
Sbjct  190  QQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILARNIGDGHRV  249

Query  241  IHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECIEARGLASRVTVSHFH  300
            IHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECIEARGLASRVTVSHFH
Sbjct  250  IHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECIEARGLASRVTVSHFH  309

Query  301  SWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGYDAVLVDEGHDFDSRWLA  360
            SWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGYDAVLVDEGHDFDSRWLA
Sbjct  310  SWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGYDAVLVDEGHDFDSRWLA  369

Query  361  LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVNYRNPKRILH  420
            LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVNYRNPKRILH
Sbjct  370  LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVNYRNPKRILH  429

Query  421  FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADWLEKRHVLCG  480
            FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADWLEKRH LCG
Sbjct  430  FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADWLEKRHALCG  489

Query  481  HWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTYSRRKDVVHLLTYQSSKGLE  540
            HWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTYSRRKDVVHLLTYQSSKGLE
Sbjct  490  HWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTYSRRKDVVHLLTYQSSKGLE  549

Query  541  FPYVAVINASFVHSGAADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA  595
            FPYVAVINASFV SG ADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA
Sbjct  550  FPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA  604

3) ROD_50011 in NC_013716


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  957 bits (3625),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 578/604 (96%), Positives = 596/604 (99%), Gaps = 0/604 (0%)

Query  1    MILLEHEYVMAKLINVSASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDF  60
            MILLEHEYVMAKLIN+SASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDF
Sbjct  1    MILLEHEYVMAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDF  60

Query  61   VIIDPDNGLVFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALP  120
            VIIDP+NGLVFLEVKDWTVSTLR+ NQEQVTLETDGLLKSEINPLVQVRRYACDTVNALP
Sbjct  61   VIIDPENGLVFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALP  120

Query  121  ADPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKALTGNDENAVEKIFPSAQTICQDEM  180
            A+PCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLK+L+GNDENAVEKIFPSAQTICQDEM
Sbjct  121  ANPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEM  180

Query  181  TQSVLPEVFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILA  240
            TQSVLPEVF+QKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILA
Sbjct  181  TQSVLPEVFQQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILA  240

Query  241  RNIGDGHRVIHGVAGSGKTMILLCRCLYLAETTSGKILVLCYNITLASYLRECIEARGLR  300
            RNIGDGHRVIHGVAGSGKTMILL RCLYLAETT+GKILVLCYNITLASYLRECIEARGL 
Sbjct  241  RNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECIEARGLA  300

Query  301  SRVTVSHFHSWCASMAKRHGIQVTADRKEYPEKCFSTLEEAVNSGKITQTGYDAVLVDEG  360
            SRVTVSHFHSWCASM KRHGI+VTADRKEYP+KCFS+LEEAVNSGKIT+TGYDAVLVDEG
Sbjct  301  SRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGYDAVLVDEG  360

Query  361  HDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVN  420
            HDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVN
Sbjct  361  HDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVN  420

Query  421  YRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADW  480
            YRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADW
Sbjct  421  YRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADW  480

Query  481  LEKRHALCGHWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCFDSEGKKAYSRRKDVVHLL  540
            LEKRHALCGHWSDMAVLCP+E S +QL++VMT RG+PFATCFD EGKK+YSRRKDVVHLL
Sbjct  481  LEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTYSRRKDVVHLL  540

Query  541  TYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHL  600
            TYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHL
Sbjct  541  TYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHL  600

Query  601  EDFA  604
            EDFA
Sbjct  601  EDFA  604

4) EC042_3187 in NC_017626


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  939 bits (3558),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 565/595 (95%), Positives = 588/595 (99%), Gaps = 0/595 (0%)

Query  1    MAKLINVSASTEERMTSGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  60
            MAKLIN+SASTEERMT+GERRVASRLESFLNDDC+VWYDIPVGRKNRHPDFVIIDP+NGL
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQARRYACDTVNALLADPCLRQND  120
            VFLEVKDWTVSTLR+ NQEQVTLETDGLLKSEINPLVQ RRYACDTVNAL A+PCLRQND
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GQYKGRLNLAWAYGVVFTRITRQQLKALTGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  180
            GQYKGRLNLAWAYGVVFTRITRQQLK+L+GNDENAVEKIFPSAQTICQDEMTQSVLPEVF
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  189

Query  181  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILARNIGDGHRV  240
            +QKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILARNIGDGHRV
Sbjct  190  QQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILARNIGDGHRV  249

Query  241  IHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECIDVRGLTSRVTVSHFH  300
            IHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECI+ RGL+SRVTVSHFH
Sbjct  250  IHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECIEARGLASRVTVSHFH  309

Query  301  SWCASMIKRHGIQVTADRKDYPEKCFSTLEEAVNSGKITDAGYDAVLVDEGHDFDSRWLA  360
            SWCASM+KRHGI+VTADRK+YP+KCFS+LEEAVNSGKIT +GYDAVLVDEGHDFDSRWLA
Sbjct  310  SWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGYDAVLVDEGHDFDSRWLA  369

Query  361  LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVNYRNPKRILH  420
            LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVNYRNPKRILH
Sbjct  370  LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVNYRNPKRILH  429

Query  421  FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILHCASERDEARQVADWLEKCHALCG  480
            FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEIL+CASERDEARQVADWLEK HALCG
Sbjct  430  FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADWLEKRHALCG  489

Query  481  HWSDMAVLCPTEHSAKQLQDVMTQRGMPFATCFDREGKKAYSRRKDVVHLLTYQSSKGLE  540
            HWSDMAVLCPTE+SA+QLQDVMT RG+PFATCFDREGKK+YSRRKDVVHLLTYQSSKGLE
Sbjct  490  HWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTYSRRKDVVHLLTYQSSKGLE  549

Query  541  FPYVAVINASFIPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA  595
            FPYVAVINASF+PSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA
Sbjct  550  FPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA  604

5) O3M_04340 in NC_018650


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  899 bits (3404),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/554 (99%), Positives = 551/554 (99%), Gaps = 0/554 (0%)

Query  1    MGRKNRHPDFVIIDPENGLVFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRR  60
            +GRKNRHPDFVIIDPENGLVFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRR
Sbjct  51   VGRKNRHPDFVIIDPENGLVFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRR  110

Query  61   YACDTVNALPANPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFP  120
            YACDTVNALPANPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFP
Sbjct  111  YACDTVNALPANPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFP  170

Query  121  SAQTICQDEMTQSVLPEVFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIK  180
            SAQTICQDEMTQSVLPEVF+QKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIK
Sbjct  171  SAQTICQDEMTQSVLPEVFQQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIK  230

Query  181  IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYL  240
            IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYL
Sbjct  231  IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYL  290

Query  241  RECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRT  300
            RECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRT
Sbjct  291  RECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRT  350

Query  301  GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQA  360
            GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQA
Sbjct  351  GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQA  410

Query  361  QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE  420
            QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE
Sbjct  411  QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE  470

Query  421  RDEARQVADWLEKRHVLCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTY  480
            RDEARQVADWLEKRH LCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTY
Sbjct  471  RDEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTY  530

Query  481  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVHSGAADESEVIPVLYVAFTRATRELLVTC  540
            SRRKDVVHLLTYQSSKGLEFPYVAVINASFV SG ADESEVIPVLYVAFTRATRELLVTC
Sbjct  531  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTC  590

Query  541  YRENSISRHLEDFA  554
            YRENSISRHLEDFA
Sbjct  591  YRENSISRHLEDFA  604

6) O3O_21350 in NC_018661


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  899 bits (3404),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/554 (99%), Positives = 551/554 (99%), Gaps = 0/554 (0%)

Query  1    MGRKNRHPDFVIIDPENGLVFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRR  60
            +GRKNRHPDFVIIDPENGLVFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRR
Sbjct  51   VGRKNRHPDFVIIDPENGLVFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRR  110

Query  61   YACDTVNALPANPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFP  120
            YACDTVNALPANPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFP
Sbjct  111  YACDTVNALPANPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFP  170

Query  121  SAQTICQDEMTQSVLPEVFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIK  180
            SAQTICQDEMTQSVLPEVF+QKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIK
Sbjct  171  SAQTICQDEMTQSVLPEVFQQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIK  230

Query  181  IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYL  240
            IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYL
Sbjct  231  IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYL  290

Query  241  RECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRT  300
            RECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRT
Sbjct  291  RECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRT  350

Query  301  GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQA  360
            GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQA
Sbjct  351  GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQA  410

Query  361  QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE  420
            QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE
Sbjct  411  QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE  470

Query  421  RDEARQVADWLEKRHVLCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTY  480
            RDEARQVADWLEKRH LCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTY
Sbjct  471  RDEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTY  530

Query  481  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVHSGAADESEVIPVLYVAFTRATRELLVTC  540
            SRRKDVVHLLTYQSSKGLEFPYVAVINASFV SG ADESEVIPVLYVAFTRATRELLVTC
Sbjct  531  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTC  590

Query  541  YRENSISRHLEDFA  554
            YRENSISRHLEDFA
Sbjct  591  YRENSISRHLEDFA  604

7) O3K_04300 in NC_018658


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  899 bits (3404),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/554 (99%), Positives = 551/554 (99%), Gaps = 0/554 (0%)

Query  1    MGRKNRHPDFVIIDPENGLVFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRR  60
            +GRKNRHPDFVIIDPENGLVFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRR
Sbjct  51   VGRKNRHPDFVIIDPENGLVFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRR  110

Query  61   YACDTVNALPANPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFP  120
            YACDTVNALPANPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFP
Sbjct  111  YACDTVNALPANPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFP  170

Query  121  SAQTICQDEMTQSVLPEVFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIK  180
            SAQTICQDEMTQSVLPEVF+QKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIK
Sbjct  171  SAQTICQDEMTQSVLPEVFQQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIK  230

Query  181  IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYL  240
            IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYL
Sbjct  231  IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYL  290

Query  241  RECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRT  300
            RECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRT
Sbjct  291  RECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRT  350

Query  301  GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQA  360
            GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQA
Sbjct  351  GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQA  410

Query  361  QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE  420
            QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE
Sbjct  411  QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE  470

Query  421  RDEARQVADWLEKRHVLCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTY  480
            RDEARQVADWLEKRH LCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTY
Sbjct  471  RDEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTY  530

Query  481  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVHSGAADESEVIPVLYVAFTRATRELLVTC  540
            SRRKDVVHLLTYQSSKGLEFPYVAVINASFV SG ADESEVIPVLYVAFTRATRELLVTC
Sbjct  531  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTC  590

Query  541  YRENSISRHLEDFA  554
            YRENSISRHLEDFA
Sbjct  591  YRENSISRHLEDFA  604

8) YpsIP31758_0807 in NC_009708


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  441 bits (1660),  Expect = 5e-125, Method: Compositional matrix adjust.
 Identities = 273/612 (45%), Positives = 411/612 (68%), Gaps = 23/612 (3%)

Query  1    MAELIPTLNSCSEKMTPGERRFAKRIEASLGNDCLCWYDIPVGRQRRYPDFIILNPERGL  60
            MA LI    S  E+MTPGERR A R+E+ L +DCL WYDIPVGR+ R PDF+I++PE GL
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LFVEVKDWRIEHLRKINKTSVQYFHNNELITLTNPIEQVRQCSYAVINQLKTDMQLLQQE  120
            +F+EVKDW +  LR++N+  V    +  L +  NP+ QVR+ +   +N L ++  L Q++
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  ERYKGGLCMAYGYGVVFSHITRKQLNSAIPVDEQI--NILPPNLVICSDEITDSISSELF  178
             +YKG L +A +YGVVF++ITR+QL++    DE+   +I+P+   IC DE+T+S+ +E+F
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  189

Query  179  SHALWALFPYQFKMSLTSVQRDRIRWHLFPEIRITHTQTDLFQTDEINVNKASCQPIPDI  238
             + + ++F   F+  +T+  RD +R HLFPE+ + +                        
Sbjct  190  QQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQ---------------------  228

Query  239  IRIMDIQQELLARSLGEGHRVIHGVAGSGKTLILLYRCLYLAEVLTTPILVLCYNMTLAA  298
            I+IMDIQQE+LAR++G+GHRVIHGVAGSGKT+ILL+RCLYLAE     ILVLCYN+TLA+
Sbjct  229  IKIMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLAS  288

Query  299  RLKCQIAERGLEERVQVFHFHGWCKDQCQKYNVNVKALEGNPWELHVEAVIDAVNGGIIP  358
             L+  I  RGL  RV V HFH+WC    ++  ++V A   +  +    A+ +AVN+G I 
Sbjct  289  YLRECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKIT  348

Query  359  KEQYGAVLIDEGHDFDSTWLALVSQMVDTKTNALLFMYDDAQSIYRKRGALSFSLASVGI  418
            +  Y+AVL+DEGHDFDS WLAL++++ D  + +LL+MYDDAQSIYR+  AL+FSLASVGI
Sbjct  349  RTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGI  408

Query  419  QAQGRTSILRLNYRNTKEILAFSYIFAQQHFDSRDDSHTAFMPPESAGPQGIPPELKSFE  478
            QAQGRTS+L +NYRN K IL F+Y F+++ F+ +++ + +++ P+++G +G  PE+    
Sbjct  409  QAQGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCA  468

Query  479  SLSKEVFHLISWIKNEHSNGVCWRDIAILCPSNGVGKYLEIALVNTDIPHAHLFTANDKK  538
            S   E  ++  W+ + H+    W D+A+LCP++  ++ L+  +   ++P A  F  ++KK
Sbjct  469  SERDEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKK  528

Query  539  RYNPSNDKVCILPLPSSKGLEFHSVAVIDSSHILNDGLDLADEVRRLYVGFTRATQHLLV  598
             Y+  +D V +L   SSKGLEF  VAVI++S + ++  D ++ +  LYV+FTRAT++LLV
Sbjct  529  TYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLV  588

Query  599  TWHKNNALSTSL  610
            T  ++N++S  L
Sbjct  589  TCYRENSISRHL  600

9) VF_A0135 in NC_006841


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  426 bits (1604),  Expect = 1e-120, Method: Compositional matrix adjust.
 Identities = 258/609 (43%), Positives = 400/609 (66%), Gaps = 32/609 (5%)

Query  1    MAELIPTLNTCLSKMTAGEKRFAQRVENLLEDDYICWYDIPVGRQRRYPDFIILHPARGL  60
            MA LI    +   +MT+GE+R A R+E++L+DD + WYDIPVGR+ R PDF+I++P  GL
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LFLEVKDWKLDTIRNIDASRVELLTSKGIETTSNPIEQVRQCSYQVIDKLKRDNLLINQD  120
            +FLEVKDW + T+R+++  +V L T   + +  NP+ QVR+ + + ++ L  +  L ++D
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GKYKGNLCLPYGYGVVLTNITRIQLDRAIPLDAQ--DSVLPHHLVICKDEMVSTIDPEKF  178
            G+YKG L L+ +YGVV+T ITR QL      D +  + ++P    IC+DEM  ++ PE F
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  189

Query  179  QTKLWNMFNYKFGNQLSLPQIDRIRWHLFPEIRISTSEQQTLLPLEDTNELINPNDHIPE  238
            Q K+  MF   F  +++    D +R HLFPE+ +  + Q                     
Sbjct  190  QQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQ---------------------  228

Query  239  IIKIMDIQQEQLARSLGDGHRVIHGVAGSGKTLILGYRCLHLAEQLKKPILVLCFNITLA  298
             IKIMDIQQE LAR++GDGHRVIHGVAGSGKT+IL +RCL LAE     ILVLC+NITLA
Sbjct  229  -IKIMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLA  287

Query  299  ARLRSFINDKGIAGQVQVYHFHDWCGQQIKTYNLDIQKGEAPYWERQVETVIEGVEKGNI  358
            + LR  I+ +G+A++V V HFH WC+  +K   + +  +   Y ++   ++ E+V+ G+I
Sbjct  288  SYLRECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKI  347

Query  359  PKGQYGALLIDEGHDFEAEWLTLITQMIDPETNSLLLLYDDAQSIYKKKSNLDFSLASVG  418
             +  Y+A+L+DEGHDF++ WL+LI++++D  + SLLL+YDDAQSIY++   L+FSLASVG
Sbjct  348  TRTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVG  407

Query  419  IQAQGRTTVLRLNYRNTREILSFSYQFAKQYFDNSDTKEIPLIHPESAGITGSHPVVKKF  478
            IQAQGRT+VL +NYRN + IL F+Y F+++YF++ + +EIPL++P+++G  G++P + + 
Sbjct  408  IQAQGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRC  467

Query  479  STMDQEVEYAVKCLVHWKQNGYA----WSDIAIIYPCKHIGKKVAEALKTRSIPHILLAT  534
            ++  +E     + + +W ++  A    WSD+A++ P  + ++++ + +  R++P      
Sbjct  468  ASERDE----ARQVADWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFD  523

Query  535  SEHKKQYNPINDVVNVLPIPSSKGLEFKTVVILNSSNIPKKSDNRSEDIRRLYVGMTRAT  594
             E KK Y+  +DVV++L   SSKGLEF  V ++N+S +P    + SE I  LYV+ TRAT
Sbjct  524  REGKKTYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRAT  583

Query  595  HNLLATYHK  603
            ++LL T  +
Sbjct  584  RELLVTCYR  592

10) Q7A_2175 in NC_017857


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  412 bits (1549),  Expect = 4e-116, Method: Compositional matrix adjust.
 Identities = 258/596 (44%), Positives = 394/596 (67%), Gaps = 34/596 (5%)

Query  15   RMTSGEKRLATRLRNFLEDDYLCWYDIPIGKRRRYPDFIILHPSRGLLFLEVKDWKASSI  74
            RMT+GE+R+A+RL +FL+DD L WYDIP+G++ R PDF+I++P  GL+FLEVKDW  S++
Sbjct  23   RMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGLVFLEVKDWTVSTL  82

Query  75   KKITKETVELLTINGLKTVPNPFVQVRQYAYQGIRLLEADKELRQKGSKYDGNLVTPYAH  134
            +++ +E V L T   LK+  NP+VQVR+YA + +  L A+  LRQ++++Y G L  + A 
Sbjct  83   RQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQNDGQYKGRLNLAWAY  142

Query  135  GVVFTNITRNQIEAAIPAEYR--EKLLPDHLMIYKDEMTESVDPEEFQKRLWDMFPYQFQ  192
            GVVFT ITR+Q+ +    +    EK++P    I +DEMT+SV PE FQ+++ +MF   F+
Sbjct  143  GVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVFQQKIAGMFTTGFR  202

Query  193  TKLTLPQIDRIRWHLFPEVRISQPSQENLFGTLINQPDTPEDLSTLSEQIPDIIRIMDIQ  252
            T++T    D +R HLFPEV + Q SQ                           I+IMDIQ
Sbjct  203  TRVTPRMRDILRAHLFPEVTVKQNSQ---------------------------IKIMDIQ  235

Query  253  QEQLARSLGEGHRVIHGVAGSGKTLILGYRAELLAKLTNKPILVLCFNITLAAKLRSFMV  312
            QE LAR++G+GHRVIHGVAGSGKT+IL +R   LA  T   ILVLC+NITLA+ LR  + 
Sbjct  236  QEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECIE  295

Query  313  SKGISDKVNVHHFHDWCSQQLKTYHVDVLAGDEPYWERQVISVINGVSKDDIPRAQYSAV  372
            ++G++ +V V HFH WC+  +K   + V A+   Y ++   ++ ++V+ + I R+ Y AV
Sbjct  296  ARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGYDAV  355

Query  373  MIDEGHDFESDWLKLVVQMIDPETNSLLLLCDDAQSIYKKKSGLSFSLASTGIQAQGRST  432
            ++DEGHDF+S WL L+ +++D  + SLLL+ DDAQSIY++  +L+FSLAS GIQAQGR++
Sbjct  356  LVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTS  415

Query  433  ILKLNYRNTREILAFAYDFAKEYFGASHDDVDIPLIQPEAAGIHGERPTVHFLKQWQDEI  492
            +L +NYRN + IL FAY F++EYF   H++ +IPL+QP+A+G +G  P +      +DE 
Sbjct  416  VLPVNYRNPKRILHFAYAFSREYF-EKHQNREIPLVQPQAGGEEGTEPEILRCASERDEA  474

Query  493  SDTITCIKKWHQRGGEWRDMAILFAANYQGKAIADSLHQHGIPYSWLGSKETKHAYNPTK  552
             +    + K+H   G+W DMA+L +++  ++ + D +  +G+P++    +E K +Y+  K
Sbjct  475  RQVADWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTYSRRK  534

Query  553  DSVSVLSIHSSKGLEFPAVVIVGISQLKQDDINAEA---RLLYVGMTRAQKHLHMT  605
            D V +L+ +SSKGLEFP V ++  S +   ++  E+    +LYV+ TRA ++L +T
Sbjct  535  DVVHLLTYQSSKGLEFPYVAVINAS-FVPSGVADESEVIPVLYVAFTRATRELLVT  589

11) Tgr7_1772 in NC_011901


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  404 bits (1520),  Expect = 7e-114, Method: Compositional matrix adjust.
 Identities = 259/619 (42%), Positives = 403/619 (66%), Gaps = 34/619 (5%)

Query  1    MATLIPSLNSCLGRMQAGEKRFARRLESHLEDDYLCWYEMPVGRRQRYSDFIVLHPARGL  60
            MA LI    S   RM +GE+R A RLES L+DD L WY++PVGR++R +DF++++P  GL
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LLLEVKDWKMETIHSLDRSSVTLLTPNGLKTASNPLEQVRQCAYQLVNRLESDPQLVNPS  120
            ++LEVKDW + T++ +++  VTL T   LK+  NPL QVR+ A + VN L ++P L +  
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GRYQGKLCFPYGYGVVLTQISREQFNS------SGMAEVMPEHQVICRDEMMESTDPEEF  174
            G+Y+G+L ++ +YGVV+T+I+R+Q+++      +++  + P  Q IC+DEM +S  PE F
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  189

Query  175  QKRLWDMFNVSFARQMSLPQIDRVRWHIFPEIRIGDGQAGLFDETPADGAGGEEGNSADE  234
            Q+++ +MF  +F  +++    D +R H+FPE+ + +                        
Sbjct  190  QQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQ---------------------  228

Query  235  LIPDLIKVMDMQQEQLARSLGQGHRVIHGVAGSGKTLILGYRCLYLARLLHKPILVICFN  294
                 IK+MD+QQE LAR++G+GHRVIHGVAGSGKT+IL +RCLYLA      ILV+C+N
Sbjct  229  -----IKIMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYN  283

Query  295  ITLAARLRGMMEAQAINDRVHVYHFHDWCGEQLKRYHVQRPAPGDRYLEELVARVIEATD  354
            ITLA+ LR  +EA+++  RV V HFH WC+  +KR  ++  A    Y +   + + EA +
Sbjct  284  ITLASYLRECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVN  343

Query  355  KGQIPRGQYGALMIDEGHDFDADWLRLVVQMVDPDEGSLLLLYDDAQSIYKKNRALDFSL  414
             G+I R  Y+A+++DEGHDFD+ WL L+ ++ D    SLLL+YDDAQSIY+++RAL+FSL
Sbjct  344  SGKITRTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSL  403

Query  415  SSVGIQARGRTTILKLNYRNTNEILDFAYRFAKHYLNPTDSDEDHVPLVEPQAAGRHGPP  474
            +SVGIQA+GRT++L +NYRN + IL+FAY F+++Y++  ++ E  +PLV+PQA+G +G  
Sbjct  404  ASVGIQAQGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNRE--IPLVQPQAGGEEGTE  461

Query  475  PYLKLCSSLDEEIRYIAHTLSRLNREGVLWRDMAVTCHSRNLAKQLTKGLGASGIPVDSL  534
            P +  C+S  +E R +A+ L + +     W DMAV C +   A+QL   +   G+P  + 
Sbjct  462  PEILRCASERDEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATC  521

Query  535  VESVEKKAFDPARDSVKVMTMHSSKGLEFpvvvipgigglpgQYDDPASDAKLLYVAMTR  594
             +   KK++   +D V ++T +SSKGLEFP V +   + +P+   D +    +LYVA TR
Sbjct  522  FDREGKKTYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTR  581

Query  595  STDKLLLTASQESEFVKQL  613
            +T  LL+T  +E+ + ++L
Sbjct  582  ATRELLVTCYRENSISRHL  600

12) CJA_0632 in NC_010995


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  393 bits (1479),  Expect = 1e-110, Method: Compositional matrix adjust.
 Identities = 251/612 (42%), Positives = 386/612 (64%), Gaps = 24/612 (3%)

Query  1    MATIIPNIHASTTKMTTGERRFGQRLEKLLEDDYLCWFDVPVGQARRYPDFIILHPGRGL  60
            MA +I    ++  +MT GERR + RLE +L+DD L W+D+PVG+  R PDF+I++P  GL
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LFLEVKDWKLSTIQSMNHQTFTLLTASGAVNKPNPIEQARQCAYQVVNTLKHDKTLVQPK  120
            +FLEVKDW +ST++ +N++  TL T +   +  NP+ Q R+ A + VN+L  +  L Q  
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GKHQGNLVCPYGYGVVFTNISRKQLQTALGEEG---ESILPAHLVICQDEMLEKTDPEEF  177
            G+ +G L  + +YGVVFT I+R+QL+T  G++    E I+P+   ICQDEM +   PE F
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  189

Query  178  QQRLWAMFNYQFSQKLSLPQIDRIRAHLFPEIRIGTADLFAVTDAAASGAmdvvdivkvm  237
            QQ++ +MF   F  +++    D +RAHLFPE+ +     + + D                
Sbjct  190  QQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDI---------------  234

Query  238  dmQQEQLARSFGEGHRVVHGVAGSGKTLILGFRCWYLARTQSKPILVLCYNISLAAKLRA  297
              QQE LAR++G+GHRV+HGVAGSGKT+IL FRC YLA T +  ILVLCYNI+LA+ LR 
Sbjct  235  --QQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRE  292

Query  298  FMREKGIEQQVQVYHFHDWCGQQLRSYHIDLIDGAEPVWERQVLSVIQSVDQGHIPRAQY  357
             +  +G+  +V V HFH WC+  ++   I +  +     ++   ++ ++V+ G I R+ Y
Sbjct  293  CIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGY  352

Query  358  GAVLIDEGHDFEAEWLKLVVQMIDPETNSLLLLYDDAQSIYKKKSNLNFTLSSVGIQARG  417
            +AVL+DEGHDF++ WL L+ +++D  + SLLL+YDDAQSIY++   LNF+L+SVGIQA+G
Sbjct  353  DAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQG  412

Query  418  RTSILKLNYRNTREILQFAFNFAKDFLQEKDADEDSVPLVKPEVGGKSGMAPEFRKLNNR  477
            RTS+L +NYRN + IL+FA+ F++++++  +  E  +PLV+P+ GG  G  PE+ +  + 
Sbjct  413  RTSVLPVNYRNPKRILHFAYAFSREYFEKHQNRE--IPLVQPQAGGEEGTEPEILRCASE  470

Query  478  PEELTFIRRCLQKWHSDGVAWNEMAVIYCHHHFGEALARELNLYAIP-NLCMRDNKTRRQ  536
             +E   +   L+K+H+    W++MAV+   ++ ++ L   + L ++P   C  D   ++ 
Sbjct  471  RDEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCF-DREGKKT  529

Query  537  YDPSDDQVLLVTRPSSKGLEFPRVIVAELGALQDDEEKRAEEVRLLYVAMTRAQETLLLT  596
            Y    D V L+T  SSKGLEFP V V + + +  +    +E + +LYVA TRA   LL+T
Sbjct  530  YSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVT  589

Query  597  ASGENSYVRRLG  608
               ENS  R+L 
Sbjct  590  CYRENSISRHLE  601

13) Nhal_1170 in NC_013960


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  386 bits (1453),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 259/621 (42%), Positives = 390/621 (63%), Gaps = 39/621 (6%)

Query  1    MATLIPSLNSCLGRMQAGEKRFAYRLESHLEDDYLCWYEMPVGRRQRYSDFIIlhplrgl  60
            MA LI    S   RM +GE+R A RLES L+DD L WY++PVGR++R +DF+I++P  GL
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   lllEVKDWKRDTIQKIDKATATIITPSGLKIVSNPLEQVRQCTYQLIEHLEKDPQLINQS  120
            ++LEVKDW   T++++++   T+ T + LK   NPL QVR+ + + ++ L  +P L ++ 
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GRYKGHLVFPYGYGVVLSNITRKQF------DATDLGEVLPEYQTLCKDEMVGSVDPEDF  174
            G+YKG+L ++ +YGVV++ ITR+Q+      D   +  ++P  QT+C+DEM  SV PE F
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  189

Query  175  QERLWNMFKVQFSQPLTLPQIDRIRWHLFPEVRINAGDQGSLFPAESEEEKVEALLPDIV  234
            Q+++  MF   F   +T    D +R HLFPEV ++   Q                    +
Sbjct  190  QQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQ--------------------I  229

Query  235  KVMDMQQELLARSMGEGHRVIHGVAGSGKTLILGYRCLYLAKLLHQPILVLCYNITLAAR  294
            K+MD+QQE+LAR++G+GHRVIHGVAGSGKT+IL +RCLYLA      ILVLCYNITLA+ 
Sbjct  230  KIMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASY  289

Query  295  LRELMAERGIGDKVNVYHFHDWCGEQLRTYHVDCPKPGEGYCERLVEKVIAAVEKGTIPK  354
            LRE +  RG++ +V V HFH WC+  ++   +        Y ++    +  AV+ G I +
Sbjct  290  LRECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITR  349

Query  355  AQYGAVMIDEGHDFEPEWLTLVVSMVDPETDSLLLLYDDAQSIYSKKRQLGFSLSSVGIR  414
            + Y+AV++DEGHDF++ WL+L+  + D  + SLLL+YDDAQSIY + R L FSL+SVGI+
Sbjct  350  TGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQ  409

Query  415  AQGRTTVLKLNYRNTDEILGFAYRFASRYLSPSDKGEDHVPLVEPQSAERHGPPPAVRTF  474
            AQGRT+VL +NYRN   IL FAY F+  Y+   ++ E  +PLV+PQ++  +G  P +   
Sbjct  410  AQGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNRE--IPLVQPQAGGEEGTEPEILRC  467

Query  475  ESYEQEARYIARIFHRLHEEQDI--PWSEMCVTYRSNWMGEKLRRFFLAEGVP---CHWL  529
             S  +EAR +A   ++L+  + +   WS+M V   +++ +++L+      GVP   C   
Sbjct  468  ASERDEARQVA---DWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCF--  522

Query  530  GNAKAKKQFKASHDSVKLMTMHSSKGLEFPVVAVSGVGYMAAEGEDLVPEAKLLYVAMTR  589
             +  +KK +    D V L+T +SSKGLEFP VAV   +++++   D      +LYVA TR
Sbjct  523  -DREGKKTYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTR  581

Query  590  STEKLLITSHRETAFLAQLQD  610
            +T  LL+T  RE ++  +L+D
Sbjct  582  ATRELLVTCYRENSISRHLED  602

14) rep [C] in NC_019902


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  384 bits (1442),  Expect = 9e-108, Method: Compositional matrix adjust.
 Identities = 239/594 (41%), Positives = 379/594 (64%), Gaps = 22/594 (3%)

Query  1    MTGGEKRFARRLEAKLEDDYLVWYDVPVGSRGFHPDFIVLHPRRGLLVLEVKDWRLDTIK  60
            MT GE+R A RLE+ L+DD LVWYD+PVG +  HPDF++++P  GL+ LEVKDW + T++
Sbjct  24   MTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGLVFLEVKDWTVSTLR  83

Query  61   AIHRFRASILTARGLVSEANPLEQARGYACAIASLLQKDPALVASGGHPYAGKLLFPWGY  120
             +++ + ++ T   L SE NPL Q R YAC   + L  +P L  ++G+ Y G+L ++W+Y
Sbjct  84   QVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQNDGQ-YKGRLNLAWAY  142

Query  121  GAVLANITRRQF------ESTDLGEVLAPHQVICQDEILEDVDTEAFQQKLWGMFSVQFG  174
            G V++ ITR+Q+      +   +  ++++ Q ICQDE+ + V  E FQQK+ GMF+  F 
Sbjct  143  GVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVFQQKIAGMFTTGFR  202

Query  175  EVLTLPQIDRIRWHIFPEIRIGAAQAELFENTEEPLPDLLRVMDLQQEQLARSLGEGHRV  234
              +T    D +R H+FPE+ +                  +++MD+QQE LAR++G+GHRV
Sbjct  203  TRVTPRMRDILRAHLFPEVTVKQNSQ-------------IKIMDIQQEILARNIGDGHRV  249

Query  235  IHGVAGSGKTMILAYRCLHLARAMNRPILALCFNVPLATRLEALLREQGLEDQVSVRSFH  294
            IHGVAGSGKTMIL +RCL LA +    IL LC+N+ LA+ L   +  +GL  +V+V  FH
Sbjct  250  IHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECIEARGLASRVTVSHFH  309

Query  295  AWCRSQLVHYHVPLPSDGKDYADQLVQRVIKAVDRQQIPAGQYGAVLIDEGHDFAAHWLK  354
            +WC S + +  + + +D K+Y+D+    +  AV+  +I    Y+AVL+DEGHDF ++WL 
Sbjct  310  SWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGYDAVLVDEGHDFDSRWLA  369

Query  355  LLAQMVDPATNALLLLYDDAQSIYGKSRRGKFSFKSVGIQAQGRTTILKLNYRNTTEVLR  414
            L+A++ D A+ +LLL+YDDAQSIY + R  +FS+ SVGIQAQGRT++L +NYRN   +L+
Sbjct  370  LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVNYRNPKRILH  429

Query  415  LAHAFAKDVLTPADADEDGVPLVLPESSARHGPPPELVRLPSFSAEADYIADRLCALHGE  474
            +A AF+++ +   +  E  +PLV P++++ +G  PE++R +S   EA  +AD+L   H+ 
Sbjct  430  FAYAFSREYFEKHQNRE--IPLVQPQAGGEEGTEPEILRCASERDEARQVADWLEKRHAL  487

Query  475  GTPWRDMAIVYRNHFMGEKLTSRLAAAGVPVDWLHRSHDSRRYRTGEDSVKVVTFHSSKG  534
               W DMA++   +  +++L   ++  GVP       ++ + Y    D V ++T++SSKG
Sbjct  488  CGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTYSRRKDVVHLLTYQSSKG  547

Query  535  LEFPVVAIPGMGYLPHEHDDPEDEVRLMYVAMTRAMERLVITYHRESAFVARLA  588
            LEFP VA+   +++P    D  + + ++YVA TRA   L++T  RE+++  +L 
Sbjct  548  LEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHLE  601

15) ROD_48331 in NC_013716


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  378 bits (1422),  Expect = 4e-106, Method: Compositional matrix adjust.
 Identities = 245/612 (41%), Positives = 401/612 (66%), Gaps = 25/612 (4%)

Query  1    MAIIIPTINSCSEKMTAGEKRLARLLEGGLSDSCTCWYDTPMGKKHNHPDFVILAPDKGL  60
            MA +I    S  E+MT+GE+R+A  LE+ L+D C  WYD P+G+K+ HPDFVI+ P++GL
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   MFIEVKDWFITKIKSANKTNIQYETPNGTESFKNPIEQVRQYTFDTIDNLKKDRQLCQQN  120
            +F+EVKDW ++ ++  N+ ++  ET     S  NP+ QVR+Y+ DT++ L  +  L Q++
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GDYQGSFILPYGYGVYFTNITRTQLEKAFPADK---LNEILPSEHIICKDEINEFMPREK  177
            G+Y+G + L+ +YGV FT ITR QL K+++++    ++ I+PS + IC+DE+ + +  E 
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQL-KTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEV  188

Query  178  ISLRLNKLIKHKFSYKPTPQQLDRIRWHLYPDVRINKSATQSAAGNFSLNTPDIISIMDR  237
            +  ++  ++   F  + TP+  D +R HL+P+V +++++               I IMD 
Sbjct  189  FQQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQ--------------IKIMDI  234

Query  238  QQEQLARSMGGGHRVIHGVAGSGKTLILLHRCIEIANNIENDKPILVICYNITLARKLKP  297
            QQE LAR++G+GHRVIHGVAGSGKT+ILL RC+ +A+       ILV+CYNITLA  L+ 
Sbjct  235  QQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGK--ILVLCYNITLASYLRE  292

Query  298  LIEQHNVRLPVIVTHFHSWCYQQLNNHNL-LPPPGKNYISQMENTLSQAFEDGIIESEQY  356
             IE + +   V V+HFHSWC   ++ H + + +  K+Y  +  ++L +A + G I    Y
Sbjct  293  CIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGY  352

Query  357  SAVLIDEGHDFKQEWLKILAQMPDKKDNALLFLYDDTQSIYQKKKSLDFTLSSVDIKAIG  416
             AVL+DEGHDF   WL ++A++ D+   +LL++YDD+QSIY++ ++L+F+L+SV+I+A G
Sbjct  353  DAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQG  412

Query  417  RTTILNINYRNTRQILHFASSIAFNYLNNHIDDTLKYQQPDAGGIAGIYPD-LACFDNQD  475
            RT++L +NYRN ++ILHFA +++ +Y+++H +  +   QP+AGG  G  P+ L C  ++ 
Sbjct  413  RTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRC-ASER  471

Query  476  EEMTHVLDWVVKQRQQGVPWAEIAILCPSTYSIASTLEPRLTARKIPYQIIVSGEDKKKW  535
            +E  +V DW+ K++     W+++A+LCP+    A  L+  +T R +P+      E+KK  
Sbjct  472  DEARQVADWLEKRHALCGHWSDMAVLCPTE-RSAQQLQDVMTLRGVPFATCFDREGKKTY  530

Query  536  SPDKDLLCVMPLPSSKGLEFQSVAVMDAAKVRDD-SDLSDDIKRLYVGFTRARQNLLVTM  594
            S  KD++ ++   SSKGLEF  VAV++A+ V  + +D S+ I  LYV+FTRA ++LLVT 
Sbjct  531  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTC  590

Query  595  HGNGTLCDHIIE  606
              + ++  H+ +
Sbjct  591  YRENSISRHLED  602

16) SEEB0189_19710 in NC_021844


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  377 bits (1416),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 248/610 (41%), Positives = 398/610 (66%), Gaps = 25/610 (4%)

Query  1    MAIIIPTVSSCSEKITAGEKRLARLLERGLSDSCTCWYDTPMGKQHSHPDFVILTPDKGI  60
            MA +I   +S  E++T+GE+R+A  LE  L+D C  WYD P+G+++ HPDFVI+ P++G+
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LFIEVKDWFITKIKGANKTYVQYETKNGIESLKNPIEQVRQYAFQTINSLKTDPQLRQQE  120
            +F+EVKDW ++ ++  N+  V  ET   + S  NP+ QVR+YA +T+N+L ++P LRQ++
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GQYQGSFVMPYGYGVYLANISRSQLEKAFSPTE---LADILPTDKVICKDELNEFMSQEK  177
            GQY+G + ++ +YGV ++ I+R QL K+++  +   +  I+P+ + IC+DE+ + +  E 
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQL-KTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEV  188

Query  178  VAARLALLAKYNFAHQTTPQQLDRIRWHLYPDIRIHKPIKQADVKNFTLHTPSIISIMDR  237
               ++A +    F  + TP+  D +R HL+P++              T+   S I IMD 
Sbjct  189  FQQKIAGMFTTGFRTRVTPRMRDILRAHLFPEV--------------TVKQNSQIKIMDI  234

Query  238  QQEQLARSMGSGHRVIHGVAGSGKTLILLHRCLELANNIENEKPVLVICYNITLARKLRA  297
            QQE LAR++G GHRVIHGVAGSGKT+ILL RCL LA+       +LV+CYNITLA  LR 
Sbjct  235  QQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGK--ILVLCYNITLASYLRE  292

Query  298  LIEKHTLRLPVEVTHFHLWCHQQLQSYG-RLPPKSKNFVELMENALSIAFEDGIIQPEQY  356
             IE + L   V V+HFH WC   ++  G ++ +  K++ +   +AL  A + G I    Y
Sbjct  293  CIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGY  352

Query  357  SAVLIDEGHDFNPEWLRILTRMADTKNNTLLFLYDDAQSIYQKKKALDFTLSSVGIKAQG  416
             AVL+DEGHDF++ WL +++R+ D  + +LL++YDDAQSIY++ +AL+F+L+SVGI+AQG
Sbjct  353  DAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQG  412

Query  417  RTTILNINYRNTQQILHFASSIAFNYLNNHIEDALKYQQPDSGGIAGSYPE-LTCFDNQD  475
            RT++L +NYRN ++ILHFA +++ +Y+++H +  +   QP++GG  G+ PE L C  ++ 
Sbjct  413  RTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRC-ASER  471

Query  476  EEITHILNWVIEQHQRGIPWFDIAILCPSTYSIKDVLGPQLTARNIPYQMIITSADKKNW  535
            +E  ++ +W+  +H     W D+A+LCP+  S ++ L   +T R +P+   +   +KK  
Sbjct  472  DEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQ-LQDVMTLRGVPFATCFDREGKKTY  530

Query  536  SPQQERLCVMPLPSSKGLEFQSVAVMDAA-RSKNEEDLSNDIKRLYVGFTRARYNLLITM  594
            S +++ + ++   SSKGLEF  VAV++A+  +    D S+ I  LYV+FTRA  +LL+T 
Sbjct  531  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTC  590

Query  595  NGENALSAHL  604
              EN++S HL
Sbjct  591  YRENSISRHL  600

17) R2APBS1_1138 in NC_020541


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  377 bits (1418),  Expect = 9e-106, Method: Compositional matrix adjust.
 Identities = 252/620 (41%), Positives = 386/620 (63%), Gaps = 35/620 (5%)

Query  1    MATLIPTRNSCLPRMTGGEKRVSERLEQKLEDDYLLWYDVPVGLKQRHPDFVVFHPRRGL  60
            MA LI    S   RMT GE+RV+ RLE  L+DD L+WYD+PVG K+RHPDFV+++P  GL
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LVLEVKDWKADTIRHADSTQFTLVTERGLVKEANPLLQARAYALEIGVVLERDPALRHPE  120
            + LEVKDW   T+R+ +  Q TL T+  L  E NPL+Q R YA +    L  +P LR+ +
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GSRYAGKLIMPWGWGVVLANITRKQF------DEGGLGEVLPEHLVICRDELYETVDAEV  174
            G +Y G+L ++W+ GVV++ ITR+Q+      DE ++  ++P    IC+DE+ ++V +EV
Sbjct  130  G-QYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEV  188

Query  175  FQQRLWAMFPQVYPVALTLPQIDRVRWHLFPELRVEAGSGQFGLFGPTDAAVRPLEIPDL  234
            FQQ++ +MF   +   +T    D +R HLFPE+ V   S                     
Sbjct  189  FQQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQ--------------------  228

Query  235  VKVMDTQQEQLARSIGGEHRIIHGVAGSGKTMILGFRAMQLARELSKPILVLCYNKTLAA  294
            +K+MD QQE LAR+IG+ HR+IHGVAGSGKTMIL FR + LA   +  ILVLCYN TLA+
Sbjct  229  IKIMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLAS  288

Query  295  RLEQLIGERGLSEKVQVYNFHKWCRKMLVAYHEPLPPGSGKAFVEALPPAVIAGVDRGRI  354
             L + I  RGL+ +V V +FH WC  M V  H     +  K + +   +A+  +V+ G+I
Sbjct  289  YLRECIEARGLASRVTVSHFHSWCASM-VKRHGIKVTADRKEYPDKCFSALEEAVNSGKI  347

Query  355  PRAQYGAVLVDEGHDFEPDWYKLIVQMIDPATNSLLVLYDDAQNIYGNPNRRKISWKSLG  414
             R+ Y+AVLVDEGHDF++ W  LI +++D A+ SLL++YDDAQ+IY      ++S  S+G
Sbjct  348  TRTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVG  407

Query  415  VQAQGRTTILKLNYRNTLEILSVARTFAQDLLASRSDEADGDGVPLVAPESAGRRGAVPE  474
            +QAQGRT++L +NYRN   IL  A +F+++ +    +  +   +PLV P+++G  G+ PE
Sbjct  408  IQAQGRTSVLPVNYRNPKRILHFAYAFSREYF----EKHQNREIPLVQPQAGGEEGTEPE  463

Query  475  LVRTDTARAQMDVLIARLRDEHAHGRPYSEMAVIYRNQWEGEKLHEV--LRDLGIPSRLA  532
            ++R  + R +   +  +L   HA     S+MAV+   ++ +++L++V  LR++ +++ + 
Sbjct  464  ILRCASERDEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCF-  522

Query  533  DNTGKQSLFAVEDSIKLVTMHSSKGLEFPFVIIPGIGGLPKEGQSEADEARLLYVAMTRA  592
            D  GK++     D + L+T +SSKGLEFP+V +   + +P     E++   +LYVA TRA
Sbjct  523  DREGKKTYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRA  582

Query  593  TEHLLLIHHLDSVFSRRIRD  612
            T +LL+    ++ +SR++ D
Sbjct  583  TRELLVTCYRENSISRHLED  602

18) SeD_A4939 in NC_011205


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  376 bits (1412),  Expect = 2e-105, Method: Compositional matrix adjust.
 Identities = 246/610 (41%), Positives = 398/610 (66%), Gaps = 25/610 (4%)

Query  1    MAIIIPTVSSCSEKITAGEKRLARLLERGLSDSCTCWYDTPMGKQHSHPDFVILTPDKGI  60
            MA +I   +S  E++T+GE+R+A  LE  L+D C  WYD P+G+++ HPDFVI+ P++G+
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LFIEVKDWFITKIKGANKTYVQYETKNGIESLKNPIEQVRQYAFQTINSLKTDPQLRQQE  120
            +F+EVKDW ++ ++  N+  V  ET   + S  NP+ QVR+YA +T+N+L ++P LRQ++
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GQYQGSFVMPYGYGVYLSNISRSQLEKAFSPTE---LADILPTDKVICKDELNEFMSQEK  177
            GQY+G + ++ +YGV ++ I+R QL K+++  +   +  I+P+ + IC+DE+ + +  E 
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQL-KTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEV  188

Query  178  VAARLALLAKYNFAHQTTPQQLDRIRWHLYPDIRIHKPIKQADVKNFTLHTPSIISIMDR  237
               ++A +    F  + TP+  D +R HL+P++              T+   S I IMD 
Sbjct  189  FQQKIAGMFTTGFRTRVTPRMRDILRAHLFPEV--------------TVKQNSQIKIMDI  234

Query  238  QQEQLARSMGSGHRVIHGVAGSGKSLILLHRCLELANNIENEKPVLVICYNITLARKLKA  297
            QQE LAR++G GHRVIHGVAGSGK++ILL RCL LA+       +LV+CYNITLA  L+ 
Sbjct  235  QQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGK--ILVLCYNITLASYLRE  292

Query  298  LIEKHTLRLPVEVTHFHLWCHQQLQSYG-RLPPKSKNFVELMENALSIAFEDGIIQPEQY  356
             IE + L   V V+HFH WC   ++  G ++ +  K++ +   +AL  A + G I    Y
Sbjct  293  CIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGY  352

Query  357  SAVLIDEGHDFNPEWLRILTRMADTKNNTLLFLYDDAQSIYQKKKALDFTLSSVGIKAQG  416
             AVL+DEGHDF++ WL +++R+ D  + +LL++YDDAQSIY++ +AL+F+L+SVGI+AQG
Sbjct  353  DAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQG  412

Query  417  RTTILNINYRNTQQILHFASSIAFNYLNNHIEDALKYQQPDSGGIAGSYPE-LTCFDNQD  475
            RT++L +NYRN ++ILHFA +++ +Y+++H +  +   QP++GG  G+ PE L C  ++ 
Sbjct  413  RTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRC-ASER  471

Query  476  EEITHILNWVIEQHQRGIPWFDIAILCPSTYSIKDVLGPQLTARNIPYQMIITSADKKNW  535
            +E  ++ +W+  +H     W D+A+LCP+  S ++ L   +T R +P+   +   +KK  
Sbjct  472  DEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQ-LQDVMTLRGVPFATCFDREGKKTY  530

Query  536  SPQQERLCVMPLPSSKGLEFQSVAVMDAA-RSKNEEDLSNDIKRLYVGFTRARYNLLITM  594
            S +++ + ++   SSKGLEF  VAV++A+  +    D S+ I  LYV+FTRA  +LL+T 
Sbjct  531  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTC  590

Query  595  NGENALSEHL  604
              EN++S HL
Sbjct  591  YRENSISRHL  600

19) SEN4292 in NC_011294


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  376 bits (1413),  Expect = 2e-105, Method: Compositional matrix adjust.
 Identities = 247/610 (41%), Positives = 398/610 (66%), Gaps = 25/610 (4%)

Query  1    MAIIIPTVSSCSEKITAGEKRLARLLERGLSDSCTCWYDTPMGKQHSHPDFVILTPDKGI  60
            MA +I   +S  E++T+GE+R+A  LE  L+D C  WYD P+G+++ HPDFVI+ P++G+
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LFIEVKDWFITKIKGANKTYVQYETKNGIESLKNPIEQVRQYAFQTINSLKTDPQLRQQE  120
            +F+EVKDW ++ ++  N+  V  ET   + S  NP+ QVR+YA +T+N+L ++P LRQ++
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GQYQGSFVMPYGYGVYLSNISRSQLEKAFSPTE---LADILPTDKVICKDELNEFMSQEK  177
            GQY+G + ++ +YGV ++ I+R QL K+++  +   +  I+P+ + IC+DE+ + +  E 
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQL-KTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEV  188

Query  178  VAARLALLAKYNFAHQTTPQQLDRIRWHLYPDIRIHKPIKQADVKNFTLHTPSIISIMDR  237
               ++A +    F  + TP+  D +R HL+P++              T+   S I IMD 
Sbjct  189  FQQKIAGMFTTGFRTRVTPRMRDILRAHLFPEV--------------TVKQNSQIKIMDI  234

Query  238  QQEQLARSMGSGHRVIHGVAGSGKTLILLHRCLELANNIENEKPVLVICYNITLARKLKA  297
            QQE LAR++G GHRVIHGVAGSGKT+ILL RCL LA+       +LV+CYNITLA  L+ 
Sbjct  235  QQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGK--ILVLCYNITLASYLRE  292

Query  298  LIEKHTLRLPVEVTHFHLWCHQQLQSYG-RLPPKSKNFVELMENALSIAFEDGIIQPEQY  356
             IE + L   V V+HFH WC   ++  G ++ +  K++ +   +AL  A + G I    Y
Sbjct  293  CIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGY  352

Query  357  SAVLIDEGHDFNPEWLRILTRMADTKNNTLLFLYDDAQSIYQKKKALDFTLSSVGIKAQG  416
             AVL+DEGHDF++ WL +++R+ D  + +LL++YDDAQSIY++ +AL+F+L+SVGI+AQG
Sbjct  353  DAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQG  412

Query  417  RTTILNINYRNTQQILHFASSIAFNYLNNHIEDALKYQQPDSGGIAGSYPE-LTCFDNQD  475
            RT++L +NYRN ++ILHFA +++ +Y+++H +  +   QP++GG  G+ PE L C  ++ 
Sbjct  413  RTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRC-ASER  471

Query  476  EEITHILNWVIEQHQRGIPWFDIAILCPSTYSIKDVLGPQLTARNIPYQMIITSADKKNW  535
            +E  ++ +W+  +H     W D+A+LCP+  S ++ L   +T R +P+   +   +KK  
Sbjct  472  DEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQ-LQDVMTLRGVPFATCFDREGKKTY  530

Query  536  SPQQERLCVMPLPSSKGLEFQSVAVMDAA-RSKNEEDLSNDIKRLYVGFTRARYNLLITM  594
            S +++ + ++   SSKGLEF  VAV++A+  +    D S+ I  LYV+FTRA  +LL+T 
Sbjct  531  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTC  590

Query  595  NGENALSEHL  604
              EN++S HL
Sbjct  591  YRENSISRHL  600

20) SG4357 in NC_011274


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  376 bits (1413),  Expect = 2e-105, Method: Compositional matrix adjust.
 Identities = 247/610 (41%), Positives = 398/610 (66%), Gaps = 25/610 (4%)

Query  1    MAIIIPTVSSCSEKITAGEKRLARLLERGLSDSCTCWYDTPMGKQHSHPDFVILTPDKGI  60
            MA +I   +S  E++T+GE+R+A  LE  L+D C  WYD P+G+++ HPDFVI+ P++G+
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LFIEVKDWFITKIKGANKTYVQYETKNGIESLKNPIEQVRQYAFQTINSLKTDPQLRQQE  120
            +F+EVKDW ++ ++  N+  V  ET   + S  NP+ QVR+YA +T+N+L ++P LRQ++
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GQYQGSFVMPYGYGVYLSNISRSQLEKAFSPTE---LADILPTDKVICKDELNEFMSQEK  177
            GQY+G + ++ +YGV ++ I+R QL K+++  +   +  I+P+ + IC+DE+ + +  E 
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQL-KTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEV  188

Query  178  VAARLALLAKYNFAHQTTPQQLDRIRWHLYPDIRIHKPIKQADVKNFTLHTPSIISIMDR  237
               ++A +    F  + TP+  D +R HL+P++              T+   S I IMD 
Sbjct  189  FQQKIAGMFTTGFRTRVTPRMRDILRAHLFPEV--------------TVKQNSQIKIMDI  234

Query  238  QQEQLARSMGSGHRVIHGVAGSGKTLILLHRCLELANNIENEKPVLVICYNITLARKLKA  297
            QQE LAR++G GHRVIHGVAGSGKT+ILL RCL LA+       +LV+CYNITLA  L+ 
Sbjct  235  QQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGK--ILVLCYNITLASYLRE  292

Query  298  LIEKHTLRLPVEVTHFHLWCHQQLQSYG-RLPPKSKNFVELMENALSIAFEDGIIQPEQY  356
             IE + L   V V+HFH WC   ++  G ++ +  K++ +   +AL  A + G I    Y
Sbjct  293  CIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGY  352

Query  357  SAVLIDEGHDFNPEWLRILTRMADTKNNTLLFLYDDAQSIYQKKKALDFTLSSVGIKAQG  416
             AVL+DEGHDF++ WL +++R+ D  + +LL++YDDAQSIY++ +AL+F+L+SVGI+AQG
Sbjct  353  DAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQG  412

Query  417  RTTILNINYRNTQQILHFASSIAFNYLNNHIEDALKYQQPDSGGIAGSYPE-LTCFDNQD  475
            RT++L +NYRN ++ILHFA +++ +Y+++H +  +   QP++GG  G+ PE L C  ++ 
Sbjct  413  RTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRC-ASER  471

Query  476  EEITHILNWVIEQHQRGIPWFDIAILCPSTYSIKDVLGPQLTARNIPYQMIITSADKKNW  535
            +E  ++ +W+  +H     W D+A+LCP+  S ++ L   +T R +P+   +   +KK  
Sbjct  472  DEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQ-LQDVMTLRGVPFATCFDREGKKTY  530

Query  536  SPQQERLCVMPLPSSKGLEFQSVAVMDAA-RSKNEEDLSNDIKRLYVGFTRARYNLLITM  594
            S +++ + ++   SSKGLEF  VAV++A+  +    D S+ I  LYV+FTRA  +LL+T 
Sbjct  531  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTC  590

Query  595  NGENALSEHL  604
              EN++S HL
Sbjct  591  YRENSISRHL  600

21) SPUCDC_4504 in NC_022221


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  373 bits (1403),  Expect = 1e-104, Method: Compositional matrix adjust.
 Identities = 246/610 (41%), Positives = 397/610 (66%), Gaps = 25/610 (4%)

Query  1    MAIIIPTVSSCSEKITAGEKRLARLLERGLSDSCTCWYDTPMGKQHSHPDFVILTPDKGI  60
            MA +I   +S  E++T+GE+R+A  LE  L+D C  WYD P+G+++ HPDFVI+ P++G+
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LFIEVKDWFITKIKGANKTYVQYETKNGIESLKNPIEQVRQYAFQTINSLKTDPQLRQQE  120
            +F+EVKDW ++ ++  N+  V  ET   + S  NP+ QVR+YA +T+N+L ++P LRQ++
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GQYQGSFVMPYGYGVYLSNISRSQLEKAFSPTE---LADILPTDKVICKDELNEFMSQEK  177
            GQY+G + ++ +YGV ++ I+R QL K+++  +   +  I+P+ + IC+DE+ + +  E 
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQL-KTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEV  188

Query  178  VAARLALLAKYNFAHQTTPQQLDRIRWHLYPDIRIHKPIKQADVKNFTLHTPSIISIMDR  237
               ++A +    F  + TP+  D +R HL+P++              T+   S I IMD 
Sbjct  189  FQQKIAGMFTTGFRTRVTPRMRDILRAHLFPEV--------------TVKQNSQIKIMDI  234

Query  238  QQEQLARSMGSGHRVIHGVAGSGKTLILLHRCLELANNIENEKPVLVICYNITLARKLKA  297
            QQE LAR++G GHRVIHGVAGSGKT+ILL RCL LA+       +LV+CYNITLA  L+ 
Sbjct  235  QQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGK--ILVLCYNITLASYLRE  292

Query  298  LIEKHTLRLPVEVTHFYLWCHQQLQSYG-RLPPKSKNFVELMENALSIAFEDGIIQPEQY  356
             IE + L   V V+HF  WC   ++  G ++ +  K++ +   +AL  A + G I    Y
Sbjct  293  CIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGY  352

Query  357  SAVLIDEGHDFNPEWLRILTRMADTKNNTLLFLYDDAQSIYQKKKALDFTLSSVGIKAQG  416
             AVL+DEGHDF++ WL +++R+ D  + +LL++YDDAQSIY++ +AL+F+L+SVGI+AQG
Sbjct  353  DAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQG  412

Query  417  RTTILNINYRNTQQILHFASSIAFNYLNNHIEDALKYQQPDSGGIAGSYPE-LTCFDNQD  475
            RT++L +NYRN ++ILHFA +++ +Y+++H +  +   QP++GG  G+ PE L C  ++ 
Sbjct  413  RTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRC-ASER  471

Query  476  EEITHILNWVIEQHQRGIPWFDIAILCPSTYSIKDVLGPQLTARNIPYQMIITSADKKNW  535
            +E  ++ +W+  +H     W D+A+LCP+  S ++ L   +T R +P+   +   +KK  
Sbjct  472  DEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQ-LQDVMTLRGVPFATCFDREGKKTY  530

Query  536  SPQQERLCVMPLPSSKGLEFQSVAVMDAA-RSKNEEDLSNDIKRLYVGFTRARYNLLITM  594
            S +++ + ++   SSKGLEF  VAV++A+  +    D S+ I  LYV+FTRA  +LL+T 
Sbjct  531  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTC  590

Query  595  NGENALSEHL  604
              EN++S HL
Sbjct  591  YRENSISRHL  600

22) SPUL_4517 in NC_016831


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  373 bits (1403),  Expect = 1e-104, Method: Compositional matrix adjust.
 Identities = 246/610 (41%), Positives = 397/610 (66%), Gaps = 25/610 (4%)

Query  1    MAIIIPTVSSCSEKITAGEKRLARLLERGLSDSCTCWYDTPMGKQHSHPDFVILTPDKGI  60
            MA +I   +S  E++T+GE+R+A  LE  L+D C  WYD P+G+++ HPDFVI+ P++G+
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LFIEVKDWFITKIKGANKTYVQYETKNGIESLKNPIEQVRQYAFQTINSLKTDPQLRQQE  120
            +F+EVKDW ++ ++  N+  V  ET   + S  NP+ QVR+YA +T+N+L ++P LRQ++
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GQYQGSFVMPYGYGVYLSNISRSQLEKAFSPTE---LADILPTDKVICKDELNEFMSQEK  177
            GQY+G + ++ +YGV ++ I+R QL K+++  +   +  I+P+ + IC+DE+ + +  E 
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQL-KTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEV  188

Query  178  VAARLALLAKYNFAHQTTPQQLDRIRWHLYPDIRIHKPIKQADVKNFTLHTPSIISIMDR  237
               ++A +    F  + TP+  D +R HL+P++              T+   S I IMD 
Sbjct  189  FQQKIAGMFTTGFRTRVTPRMRDILRAHLFPEV--------------TVKQNSQIKIMDI  234

Query  238  QQEQLARSMGSGHRVIHGVAGSGKTLILLHRCLELANNIENEKPVLVICYNITLARKLKA  297
            QQE LAR++G GHRVIHGVAGSGKT+ILL RCL LA+       +LV+CYNITLA  L+ 
Sbjct  235  QQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGK--ILVLCYNITLASYLRE  292

Query  298  LIEKHTLRLPVEVTHFYLWCHQQLQSYG-RLPPKSKNFVELMENALSIAFEDGIIQPEQY  356
             IE + L   V V+HF  WC   ++  G ++ +  K++ +   +AL  A + G I    Y
Sbjct  293  CIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGY  352

Query  357  SAVLIDEGHDFNPEWLRILTRMADTKNNTLLFLYDDAQSIYQKKKALDFTLSSVGIKAQG  416
             AVL+DEGHDF++ WL +++R+ D  + +LL++YDDAQSIY++ +AL+F+L+SVGI+AQG
Sbjct  353  DAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQG  412

Query  417  RTTILNINYRNTQQILHFASSIAFNYLNNHIEDALKYQQPDSGGIAGSYPE-LTCFDNQD  475
            RT++L +NYRN ++ILHFA +++ +Y+++H +  +   QP++GG  G+ PE L C  ++ 
Sbjct  413  RTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRC-ASER  471

Query  476  EEITHILNWVIEQHQRGIPWFDIAILCPSTYSIKDVLGPQLTARNIPYQMIITSADKKNW  535
            +E  ++ +W+  +H     W D+A+LCP+  S ++ L   +T R +P+   +   +KK  
Sbjct  472  DEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQ-LQDVMTLRGVPFATCFDREGKKTY  530

Query  536  SPQQERLCVMPLPSSKGLEFQSVAVMDAA-RSKNEEDLSNDIKRLYVGFTRARYNLLITM  594
            S +++ + ++   SSKGLEF  VAV++A+  +    D S+ I  LYV+FTRA  +LL+T 
Sbjct  531  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTC  590

Query  595  NGENALSEHL  604
              EN++S HL
Sbjct  591  YRENSISRHL  600

23) Pnap_3974 in NC_008781


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  369 bits (1385),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 249/617 (41%), Positives = 401/617 (65%), Gaps = 39/617 (6%)

Query  1    MAKLIPAIGSCLPRMTSGERRLAERLEQQLDNDCLLWYDVPVGPKQSHPDFVLMHPRHGI  60
            MAKLI   +S   RMT+GERR+A RLE  L++DCL+WYD+PVG K+ HPDFV+++P +G+
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LILETKDWKLETIRQATRQAWDIQVGRRIKVVMSPLAQARFCAIQVVNALERDPQLVQAE  120
            ++LE KDW + T+RQ  ++   ++ +  +K  ++PL Q R  A + VNAL  +P L Q +
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GGHRGKLAFAWGYGVVFTHITRQQFN--AAGLGEAIEPHY----VICQDEMLESGKAEAF  174
            G  +G+L +AW+YGVVFT+ITRQQ++  A+   +A+E  +     ICQDEM +S  +E F
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  189

Query  175  QQRLWAMFAHAFGGGMSAQQLDRVRWNMFPQVRVQTQSALFNDNDPDAEFPGILRMLDLQ  234
            QQ++ +MF+ +F   ++++  D +R ++FP+V V+ +S               ++++D+Q
Sbjct  190  QQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQ--------------IKIMDIQ  235

Query  235  QEQLARSLGDGHRVIHGVAGSGKTMILGYRAEYLAQSHTADSKPILILCYNEALAVKLAS  294
            QE LAR++GDGHRVIHGVAGSGKTMIL +R  YLA++  +    IL+LCYN +LA  L  
Sbjct  236  QEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGK---ILVLCYNITLASYLRE  292

Query  295  VMDAKGLSGKVHALHFHKWCRDQLVAHGQELPA--RDMP--VFAKMDEMVLRVIHGVDSQ  350
             ++A+GL+++V   HFH WC   +  HG  + A  ++ P   F+ ++E       +V+S 
Sbjct  293  CIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEE-------AVNSG  345

Query  351  QIPAGQYQAVLIDEGHDFAPEWLRLATQMVDPATKNLLLLYDDAQSIYERGLTRHFSFKS  410
            +I    Y+AVL+DEGHDF + WL L +++ D A+++LLL+YDDAQSIY R  + +FS+ S
Sbjct  346  KITRTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLAS  405

Query  411  VGIQAQGRTTILKINYRNTRQILQTASLVagglllaadrdddgIPRLKPISGGRDGQAPQ  470
            VGIQAQGRT++L +NYRN ++IL+ A   A +      +++  IP ++P +GG +G  P+
Sbjct  406  VGIQAQGRTSVLPVNYRNPKRILHFAY--AFSREYFEKHQNREIPLVQPQAGGEEGTEPE  463

Query  471  IFRLPNRRAEALKIAELLNAAHHEGHAWNDMAVICRRYDEMDDCAQALSRWKLPHQV---  527
            I+R ++ R EA ++A+ L+  H     W+DMAV+C      ++  + ++ + +P      
Sbjct  464  ILRCASERDEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFD  523

Query  528  RRGSGSFHPDEDTIKVLTMHASKGLEFAVVALMGVGQMPAEGEDEGEEARLFYVGATRAT  587
            R G  ++    D + +LT ++SKGLEF+ VA++  + +P+   DE+E   ++YV+ TRAT
Sbjct  524  REGKKTYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRAT  583

Query  588  GSLIVTASADSRFFKQI  604
              L+VT   ++ + +++
Sbjct  584  RELLVTCYRENSISRHL  600

24) Daci_3682 in NC_010002


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  364 bits (1368),  Expect = 7e-102, Method: Compositional matrix adjust.
 Identities = 248/608 (41%), Positives = 385/608 (64%), Gaps = 24/608 (3%)

Query  1    MAVLIPAMGACVGRMTPGERRLAERLEQKLEDDYMLWYDVPIGPKQTHPDFVVIHPRRGV  60
            MA LI   ++   RMTPGERR+A RLE  L+DD ++WYD+P+G K+ HPDFV+I+P  G+
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LILETKDWRLETVQEATKQAWTLIVDERPKVVINPAAQARHCAIQVVNALERDQQLIHDE  120
            ++LE KDW + T+++  ++  TL  D   K  INP  Q R+ A + VNAL  +  L +++
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GPHQGKLAFPWGSGVVFTNITRKQF------EESALDQTIDAHLVICKDEMLESVDAEAF  174
            G  +G+L ++W+ GVVFT ITR+Q+      +E+A+++ + +   IC+DEM +SV +E F
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  189

Query  175  QQRLWNMFPHAFGKAMSVPQLERTRWIMFPQVRVPVQGSLLPEDADELPDIMRVMDLQQE  234
            QQ++  MF  +F          RTR  + P++R  +++ L+PE +      +++MD+QQE
Sbjct  190  QQKIAGMFTTGF----------RTR--VTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQE  237

Query  235  QLARSLGDGHRVIHGVAGSGKTMILGYRAEHLAKTASTKPILVLCYNEPLAVKLNAWFAA  294
             LAR++GDGHRVIHGVAGSGKTMIL +R   LA T++ K ILVLCYN  LA  L   + A
Sbjct  238  ILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGK-ILVLCYNITLASYLRECIEA  296

Query  295  KGLADRVHARNFHKWCRQQLVAYGQTLPAQGPGMFDQMVEFVIRGVDRQQIPSGQYQAVM  354
            +GLA RV   +FH WC   +   G  + A+     D+    +  +V+  +I    Y+AV+
Sbjct  297  RGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGYDAVL  356

Query  355  VDEGHDFQPEWLKLVTQMVDPETNSLLILYDSAQNIYGKSKARGFSFKSVGIQASGRTTI  414
            VDEGHDF++ WL L++++ D  + SLL++YD AQ+IY + +A  FS+ SVGIQA GRT++
Sbjct  357  VDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSV  416

Query  415  LKINYRNTRQILQIANRVAAEFLQPNAQDDDGVPLVQPISCGREGQEPLIVRLPSLRDEP  474
            L +NYRN ++IL++A   + E+++   +++  +PLVQP + G EG EP I+R +S RDE+
Sbjct  417  LPVNYRNPKRILHFAYAFSREYFE--KHQNREIPLVQPQAGGEEGTEPEILRCASERDEA  474

Query  475  AKIAELLAAAHQEGHAWGDMAILCRDHDSMNQCALALGRRKLPHRV---RHRSGDFDPLA  531
             ++A+ L   H     W+DMA+LC  + S +Q    +  R +P      R+    +    
Sbjct  475  RQVADWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTYSRRK  534

Query  532  DTIKVMTMHASKGLEFPVVAVAGVGQMPREGEDAADEAKLFYVAATRATQKLVLTVAGEG  591
            D + ++T ++SKGLEFP VAV   + +P    D ++   ++YVA TRAT+ L++T   E 
Sbjct  535  DVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCYREN  594

Query  592  AFAKALVD  599
            ++++ L D
Sbjct  595  SISRHLED  602

25) Rfer_4005 in NC_007908


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  363 bits (1362),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 250/605 (42%), Positives = 379/605 (63%), Gaps = 38/605 (6%)

Query  1    MATLIPALGACVSRMTGGERRLAERLEQKLDDDYLLWYDVPMGPKNAHPDFCVMHPRRGI  60
            MA LI   ++   RMT GERR+A RLE  L+DD L+WYD+P+G KN HPDF +++P  G+
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LVLEVKDWKPSTIQQADKQTWTIIPDGIPKNVINPLEQARQYAHQVVNALERDPQLVQAD  120
            + LEVKDW  ST++Q +++  T+  DG+ K+ INPL Q R+YA + VNAL  +P L Q D
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GPHAGKLAFPWSYGVVLTNITRKQF------EAAELQHAIEPHRVLCQDEMLESVGAEEL  174
            G   G+L ++W+YGVV+T ITR+Q+      +   ++  + + + +CQDEM +SV +E +
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  189

Query  175  QSRLWDMFPYMMRGVMSLPQLDRVRWIMFPQVRVPHGSTGQTALFddtdadadadaEMPS  234
            Q ++ +MF    R  ++    D +R  +FP+V V + S                      
Sbjct  190  QQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQ---------------------  228

Query  235  IMRVMDIQQEQLARSLGDGHRVIHGVAGSGKTMILGYRAEYLAQARTASSKPILILCFNE  294
             +++MDIQQE LAR++GDGHRVIHGVAGSGKTMIL +R  YLA++  +    IL+LC+N 
Sbjct  229  -IKIMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGK---ILVLCYNI  284

Query  295  PLGVKLHSVMDAKGLSDKVHVRHFHKWCYDQLKYSGQAMPPQGPKFSEELVDRVIRAVDR  354
             L+  L+  ++A+GL+ +V V HFH WC   +K  G  + ++   +++     +  AV+ 
Sbjct  285  TLASYLRECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNS  344

Query  355  KQIPSGQYQAVLIDEGHDFAPEWLKLVTQMVDPTTNSLLLLYDDAQSIYERARSKQFSFK  414
             +I    Y+AVL+DEGHDF + WL L++++ D ++ SLLL+YDDAQSIY R R+ +FS+ 
Sbjct  345  GKITRTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLA  404

Query  415  SVGVQAQGRTTILKINYRNTKQILQTANliaadlltaddrdddGIPLVKPISCGREGQAP  474
            SVG+QAQGRT++L +NYRN K+IL+ A   A      + +++  IPLV+P + G EG  P
Sbjct  405  SVGIQAQGRTSVLPVNYRNPKRILHFAY--AFSREYFEKHQNREIPLVQPQAGGEEGTEP  462

Query  475  ILIKLPSLREEAFAIADQLSHAHKDGHAWGDMAILC-ADWKTMDLCADALHQRKLPFNV-  532
             +++ +S R+EA  +AD L   H     W+DMA+LC +++ + +L  D +  R +PF   
Sbjct  463  EILRCASERDEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQL-QDVMTLRGVPFATC  521

Query  533  --RKRTGEYNPAADAIQIMTMKVSKGLEFPVVALPGVGHMPAKGEDEQEAARVFYVAATR  590
              R     Y+   D ++++T + SKGLEFP VA+   + +P+   DE E   V+YVA TR
Sbjct  522  FDREGKKTYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTR  581

Query  591  ATQRL  595
            AT+ L
Sbjct  582  ATREL  586

26) RPSI07_mp0091 in NC_014310


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  363 bits (1363),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 252/619 (41%), Positives = 394/619 (64%), Gaps = 40/619 (6%)

Query  1    MATLIPSLNSCLGRMTSGEKRFARRLEAFLEDDYLCWYDVTVGIKRRRPDFLILNPHRGL  60
            MA LI    S   RMT+GE+R A RLE+FL+DD L WYD+ VG K R+PDF+I++P+ GL
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LALEVKDWKVGSIVRLDPQLVEAEFDGRLVKDVNPLLKSREFMTATVDMLKRDPLLVEPA  120
            + LEVKDW V+++ +++ + V  E DG L  ++NPL++ R +   TV+ L  +P L +  
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQ-N  128

Query  121  TSKYAGKLCMPYGHGLVLPNISRQEFET------SGMQDVMPGRLVICKDEMTESADPEA  174
             ++Y G+L ++ + G+V+  I+RQ++ T      ++++ + P+   IC+DEMT+S  PE 
Sbjct  129  DGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEV  188

Query  175  FQQQLWDMFTQPFRCLLQLPQIDRIRWHLFPDVRIVSRQGSLFEADDDKTTQDTRSAIPD  234
            FQQ++ +MFT  FR  +     D +R HLFP+V +                Q+++     
Sbjct  189  FQQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTV---------------KQNSQ-----  228

Query  235  LIRVMDLQQEQLARSLGDGHRVIHGVAGSGKTMILGYRAEYLAQASAKPVLVLCFNRALA  294
             I++MD+QQE LAR++GDGHRVIHGVAGSGKTMIL +R  YLA++++  +LVLC+N +LA
Sbjct  229  -IKIMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLA  287

Query  295  QKLTGWMEHKGLSQKVSVRTFHSWCVEMATTYQLGKLAGRRDEDYAALV-QNVIDGVNRG  353
              L   +E +GL+ +V+V  FHSWC  M     +   A+R+  +Y+      + ++VN G
Sbjct  288  SYLRECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRK--EYPDKCFSALEEAVNSG  345

Query  354  QVPAGQYSALLIDEGHDFDPAWLRLVVQMVDPESNSVLVMYDSAQDIYQKSRKLKFSFSS  413
            ++    Y A+L+DEGHDFD+ WL L+ ++ D  S S+L+MYD AQ IY++ R L+FS++S
Sbjct  346  KITRTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLAS  405

Query  414  VGIQARGRTTILKLNYRNSAEVLAVAYAFANDLLTAEEAEEDGAPLILPQTAGRHGSAPE  473
            VGIQA+GRT++L +NYRN+  +L  AYAF+ + +  E  ++   PL+ PQ++G +G+ PE
Sbjct  406  VGIQAQGRTSVLPVNYRNPKRILHFAYAFSREYF--EKHQNREIPLVQPQAGGEEGTEPE  463

Query  474  FIRLPSFKAELDYVADRLRASNEAGTPWRDMAVL--TYRKAQAAEVVSYLAAAKIPA---  528
            ++R +S + E   VAD+L   +     W DMAVL  T R AQ  + V  L +  +++   
Sbjct  464  ILRCASERDEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFD  523

Query  529  RAGLSK--PDNDSVNVLTLHASKGLEFPVVAIPGLGQMPYASHDANEQARVLYVGMTRAM  586
            R G       +D V++LT ++SKGLEFP VA+   + +P +  D +E   VLYV+ TRA 
Sbjct  524  REGKKTYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRAT  583

Query  587  NELVMTADRESEFAVRVGE  605
             EL++T  RE+ ++ ++ +
Sbjct  584  RELLVTCYRENSISRHLED  602

27) RSp0128 in NC_003296


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  358 bits (1343),  Expect = 7e-100, Method: Compositional matrix adjust.
 Identities = 248/618 (41%), Positives = 390/618 (64%), Gaps = 38/618 (6%)

Query  1    MATLIPSLNSCLGRMTSGEKRFARRLEAFLEGDYLCWYDVTVGIKRRRPDFLILNPHRGL  60
            MA LI    S   RMT+GE+R A RLE+FL++D L WYD+ VG K R+PDF+I++P+ GL
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LALEVKDWKVGSIIRLDPQLVEAEFDGRLVKDVNPLLKSREFMTATVDMLKRDPLLVEPA  120
            + LEVKDW V+++ +++ + V  E DG L  ++NPL++ R +   TV+ L  +P L +  
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQ-N  128

Query  121  TSKYAGKLCMPYGHGLVLPNISRQEFET------SGMQDVMPGRLLICKDEMTESADPEA  174
             ++Y G+L ++ + G+V+  I+RQ++ T      ++++ + P+   IC+DEMT+S  PE 
Sbjct  129  DGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEV  188

Query  175  FQQRLWDMFTQPFRCLLQLPQIDRIRWHLFPDVRIVSRQGSLFEADDEPATQGARPAIPD  234
            FQQ++ +MFT  FR  +     D +R HLFP+V +  +Q S                   
Sbjct  189  FQQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTV--KQNSQ------------------  228

Query  235  LIRVMDLQQEQLARSLGDGHRVIHGVAGSGKTMILGYRAEYLAQASAKPVLVLCFNRALA  294
             I++MD+QQE LAR++GDGHRVIHGVAGSGKTMIL +R  YLA++++  +LVLC+N +LA
Sbjct  229  -IKIMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLA  287

Query  295  QKLTGWMEHKGLSQKVHVRTFHSWCVEMATTYQLGKLSGRRDEDYEALVQNVIDGVNRGQ  354
              L   +E +GL+ +V V  FHSWC  M     + K+++ R E  +     + ++VN G+
Sbjct  288  SYLRECIEARGLASRVTVSHFHSWCASMVKRHGI-KVTADRKEYPDKCFSALEEAVNSGK  346

Query  355  VPAGQYSALLIDEGHDFDPAWLRLVVQMVDPETNSVLVMYDSAQDIYQKSRKLKFSFSSV  414
            +    Y A+L+DEGHDFD+ WL L+ ++ D  + S+L+MYD AQ IY++ R L+FS++SV
Sbjct  347  ITRTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASV  406

Query  415  GIQARGRTTILKLNYRNSAEVLAVAYAFANDLLTAEEAEEDGAPLILPQTAGRHGSAPAF  474
            GIQA+GRT++L +NYRN+  +L  AYAF+ + +  E  ++   PL+ PQ++G +G+ P +
Sbjct  407  GIQAQGRTSVLPVNYRNPKRILHFAYAFSREYF--EKHQNREIPLVQPQAGGEEGTEPEI  464

Query  475  IRLPSFKGELDYVVDRLRASNEAGMPWRDMAVL--TYRKAQAAEVVSHLAAAKIPA---R  529
            +R +S ++E   V D+L   +     W DMAVL  T R AQ  + V  L +  +++   R
Sbjct  465  LRCASERDEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDR  524

Query  530  AGLSKLD--NDSVNVLTLHASKGLEFPMVAIPGLGQMPYASHDANEQARVLYVGMTRAMN  587
             G       +D V++LT ++SKGLEFP VA+   + +P +  D +E   VLYV+ TRA  
Sbjct  525  EGKKTYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATR  584

Query  588  ELVMTADRASEFAVRVGE  605
            EL++T  R + ++ ++ +
Sbjct  585  ELLVTCYRENSISRHLED  602

28) Acav_4546 in NC_015138


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  357 bits (1342),  Expect = 8e-100, Method: Compositional matrix adjust.
 Identities = 249/622 (41%), Positives = 384/622 (62%), Gaps = 37/622 (5%)

Query  1    MATFIPAIGSCTSRMTAGERRLAQRLERKLDGDYSVWYDVPVGPKQTYPDFVVLHPRRGV  60
            MA +I   +S   RMT+GERR+A RLE  L++D  VWYD+PVG K+  PDFV+++P  G+
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LILETKDWHLETVRKATRQYWEIAPDGSAP-KIVKNPLEQARHCALELVRALERDPQLVQ  119
            ++LE KDW + T+R+  ++  +++ +  +  K   NPL Q R+ A + V AL  +P L Q
Sbjct  70   VFLEVKDWTVSTLRQVNQE--QVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQ  127

Query  120  PAGPHQGKLAFPWGHGVVFTRITRRQF------EAAGLAEAIAPDYVVCQDEMLEDVEPE  173
              G  +G+L ++W+ GVVFTRITR+Q+      +  ++   +++   +CQDEM + V PE
Sbjct  128  NDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPE  187

Query  174  AFQQRLWRMFPHAFGGAMSLPQIDRVRWHMFPEVRVPVQGALFAQCGGVDEVPDLLRVMD  233
             FQQ++  MF  +F   ++    D +R H+FPEV V  ++ +              ++MD
Sbjct  188  VFQQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQI--------------KIMD  233

Query  234  LQQEQLARSLGEGHRVIHGVAGSGKTMILGYRAEHLAKLHGALPDGAKPVLVLCYNEPLA  293
            +QQE LAR++G+GHRVIHGVAGSGKTMIL +R   LA         +  +LVLCYN  LA
Sbjct  234  IQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAE------TTPGKILVLCYNITLA  287

Query  294  VKLASAMEAKGLGDRVHCLHFHKWARAQLVAYGQGLPAPSLPREAFFADMVDRVVRGVDT  353
              L   +EA+GL+ RV   HFH W  + +   G  + A    R  +       +  +V++
Sbjct  288  SYLRECIEARGLASRVTVSHFHSWCASMVKRHGIKVTAD---RKEYPDKCFSALEEAVNS  344

Query  354  GHIPSAQYAAVLIDEGHDFEPEWLRLVSRMVDPATNNLLVLYDDAQSIYARARQKQFSFR  413
            G I  + Y AVL+DEGHDF++ WL L++R+ D A+ +LL++YDDAQSIY R R  +FS+ 
Sbjct  345  GKITRTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLA  404

Query  414  SVGIQAQGRTSILKINYRNTRQILQTAHLIAADLLAPEDSGEDGVPLLQPVSCGRDGEAP  473
            SVGIQAQGRTS+L +NYRN ++IL+ A  ++ + +  +++ E  +PL+QP + G +G  P
Sbjct  405  SVGIQAQGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNRE--IPLVQPQAGGEEGTEP  462

Query  474  VVVRLPSFRAEAAQVADRLAAAHQEGHAWGDMAVLCRHYAQMEECATALRHKGLPHQV--  531
             ++R +S R EA QVAD+L   H     W+DMAVLC      ++    +  +G+P     
Sbjct  463  EILRCASERDEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCF  522

Query  532  -RKGTGSFHPADDTVKVMTMHASKGLEFPVVALVGAGHMPSDGEDEREEARLFYVAATRA  590
             R G  ++    D V ++T ++SKGLEFP VA++ A+ +PS+  DE E   ++YVA TRA
Sbjct  523  DREGKKTYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRA  582

Query  591  THRLVITASGEGAFAQRLDGVG  612
            T+ L++T   E +++++L++ +
Sbjct  583  TRELLVTCYRENSISRHLEDFA  604

29) Aave_4619 in NC_008752


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  354 bits (1328),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 250/620 (41%), Positives = 386/620 (63%), Gaps = 37/620 (5%)

Query  1    MATLIPAIGSCTSRMTAGERRLAQRLERKLDGDYSVWYDVPVGPKQTYPDFVVMHPRRGV  60
            MA LI   +S   RMT+GERR+A RLE  L++D  VWYD+PVG K+  PDFV+++P  G+
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LILETKDWHLETVRKATRQYWEIAPD-GGVPKIVKNPLEQARHCALEVVRALERDPQLVQ  119
            ++LE KDW + T+R+  ++  +++ + +G+ K   NPL Q R+ A + V AL  +P L Q
Sbjct  70   VFLEVKDWTVSTLRQVNQE--QVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQ  127

Query  120  PSGPHQGKLAFPWGHGVVFTRITRRQF------EAAGLAEAIAPDYVVCQDEMLEDVEPE  173
              G  +G+L ++W+ GVVFTRITR+Q+      +  ++   +++   +CQDEM + V PE
Sbjct  128  NDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPE  187

Query  174  AFQERLWRMFPHAFGAAMSLPQIDRVRWHMFPEVRVPVQGRLFAQYGGVDEVPDLLRVMD  233
             FQ+++  MF  +F + ++    D +R H+FPEV V  ++++              ++MD
Sbjct  188  VFQQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQI--------------KIMD  233

Query  234  LQQEQLARSLGEGHRVIHGVAGSGKTMILGYRAEHLAKLHGALPDGAKPVLVLCYNEPLA  293
            +QQE LAR++G+GHRVIHGVAGSGKTMIL +R   LA         +  +LVLCYN  LA
Sbjct  234  IQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAE------TTPGKILVLCYNITLA  287

Query  294  VKLASAMEAKGLGEQVHCLHFHKWARAQLVAFGQGLPAPSLPREAFFAdmvdrvvrgvdm  353
              L   +EA+GL+ +V   HFH W  + +   G  + A    R  +       +  +V+ 
Sbjct  288  SYLRECIEARGLASRVTVSHFHSWCASMVKRHGIKVTAD---RKEYPDKCFSALEEAVNS  344

Query  354  grIPSGQYAAVLIDEGHDFEPEWLRLVSRMVDPATNNLLLLYDDAQSIYARARQKQFSFR  413
            G+I    Y AVL+DEGHDF++ WL L++R+ D A+ +LLL+YDDAQSIY R R  +FS+ 
Sbjct  345  GKITRTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLA  404

Query  414  SVGIQAQGRTSILKINYRNTRQILQTAHLIAADLLAPEDSGEDGVPLLQPVSCGRDGEAP  473
            SVGIQAQGRTS+L +NYRN ++IL+ A  ++ + +  +++ E  +PL+QP + G +G  P
Sbjct  405  SVGIQAQGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNRE--IPLVQPQAGGEEGTEP  462

Query  474  VVVRLPSFRAEAAQVADRLAAAHQEGHAWGDMAVLCRHYAQMEECATALRHKGLPHQV--  531
             ++R +S R EA QVAD+L   H     W+DMAVLC      ++    +  +G+P     
Sbjct  463  EILRCASERDEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCF  522

Query  532  -RKGTGSFHPADDTVKVMTMHASKGLEFPVVALVGAGHMPSDGEDEREEARLFYVAATRA  590
             R G  ++    D V ++T ++SKGLEFP VA++ A+ +PS+  DE E   ++YVA TRA
Sbjct  523  DREGKKTYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRA  582

Query  591  THRLVITASGEGAFAQRLDG  610
            T+ L++T   E +++++L++
Sbjct  583  TRELLVTCYRENSISRHLED  602

30) F504_3579 in NC_021745


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  354 bits (1328),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 243/604 (41%), Positives = 385/604 (64%), Gaps = 38/604 (6%)

Query  1    MTSGEKRFARRLEAFLEGDYLCWYDVTVGIKRRRPDFLILNPHRGLLALEVKDWKVGSII  60
            MT+GE+R A RLE+FL++D L WYD+ VG K R+PDF+I++P+ GL+ LEVKDW V+++ 
Sbjct  24   MTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGLVFLEVKDWTVSTLR  83

Query  61   RLDPQLVEAEFDGRLVKDVNPLLKSREFMTATVDMLKRDPLLVEPANSKYAGKLCMPYGH  120
            +++ + V  E DG L  ++NPL++ R +   TV+ L  +P L +  +++Y G+L ++ + 
Sbjct  84   QVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQ-NDGQYKGRLNLAWAY  142

Query  121  GLVLPNISRQEFET------SGMQDVMPGRLVICKDEMTESADPEAFQQRLWDMFTQPFR  174
            G+V+  I+RQ++ T      ++++ + P+   IC+DEMT+S  PE FQQ++ +MFT  FR
Sbjct  143  GVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVFQQKIAGMFTTGFR  202

Query  175  CLLQLPQIDRIRWHLFPDVRIVSRQGSLFEADDEPATQGARPAIPDLIRVMDLQQEQLAR  234
              +     D +R HLFP+V +  +Q S                    I++MD+QQE LAR
Sbjct  203  TRVTPRMRDILRAHLFPEVTV--KQNSQ-------------------IKIMDIQQEILAR  241

Query  235  SLGDGHRVIHGVAGSGKTMILGYRAEYLAQASAKPVLVLCFNRALAQKLTGWMEHKGLSQ  294
            ++GDGHRVIHGVAGSGKTMIL +R  YLA++++  +LVLC+N +LA  L   +E +GL+ 
Sbjct  242  NIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECIEARGLAS  301

Query  295  KVHVRTFHSWCVEMATTYQLGKLCGRRDEDYEALVQNVIDGVNRGQVPAGQYSALLIDEG  354
            +V V  FHSWC  M     + K+ + R E  +     + ++VN G++    Y A+L+DEG
Sbjct  302  RVTVSHFHSWCASMVKRHGI-KVTADRKEYPDKCFSALEEAVNSGKITRTGYDAVLVDEG  360

Query  355  HDFDPAWLRLVVQMVDPETNSVLVMYDSAQDIYQKSRKLKFSFSSVGIQARGRTTILKLN  414
            HDFD+ WL L+ ++ D  + S+L+MYD AQ IY++ R L+FS++SVGIQA+GRT++L +N
Sbjct  361  HDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVN  420

Query  415  YRNSAEVLAVAYAFANDLLTAEEAEEDGAPLILPQTAGRHGSAPEFIRLPSFKGELDYVV  474
            YRN+  +L  AYAF+ + +  E  ++   PL+ PQ++G +G+ PE++R +S ++E   V 
Sbjct  421  YRNPKRILHFAYAFSREYF--EKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVA  478

Query  475  DRLRASNEAGMPWRDMAVL--TYRKAQTTEVVSHLAAARIPA---RAGLSKLD--NDSVN  527
            D+L   +     W DMAVL  T R AQ  + V  L +  +++   R G       +D V+
Sbjct  479  DWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTYSRRKDVVH  538

Query  528  VLTLHGSKGLEFPMVAIPGLGQMPYASHDANEQARVLYVGMTRAMNELVMTADRASEFAV  587
            +LT ++SKGLEFP VA+   + +P +  D +E   VLYV+ TRA  EL++T  R + ++ 
Sbjct  539  LLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISR  598

Query  588  RVGE  591
            ++ +
Sbjct  599  HLED  602

31) Daro_1108 in NC_007298


> AY275838|15|G15|33440449|AAQ19135.1|Escherichia_coli_CL3|+|18898..20712|S12|-|putative 
UvrD/REP helicase
Length=604

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 241/601 (41%), Positives = 370/601 (62%), Gaps = 34/601 (5%)

Query  1    MAALIPAIGTCVSRMTGGERRLAYRLEQKLEDDWLLWYDVPLGPRNVHPDFVVFNPRRGV  60
            MA LI   ++   RMT GERR+A RLE  L+DD L+WYD+P+G +N HPDFV+++P  G+
Sbjct  10   MAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  69

Query  61   LVLEVKDWKLDTIRDIDRQSASILTSTGLKRVSNPLEQARQYAHEVSNLLQRDPQLTINS  120
            + LEVKDW + T+R+++++  ++ T   LK   NPL Q R+YA +  N L  +P L  N 
Sbjct  70   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  129

Query  121  GRMQGTLLFPWSYGVVLANISRKQF------DSTNLADVIEPHRVICQDEMTESVDAEAF  174
            G+ +G L ++W+YGVV++ I+R+Q+      D   +  ++ + + ICQDEMT+SV +E F
Sbjct  130  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  189

Query  175  QERLWGMLP--FARSVPLSLPQIDRIRWHLFPEIRIAAPTQNGLFDDQEPEIPDIVHVMD  232
            Q+++ GM+   F   V   + +I  +R HLFPE+ +   +Q              + +MD
Sbjct  190  QQKIAGMFTTGFRTRVTPRMRDI--LRAHLFPEVTVKQNSQ--------------IKIMD  233

Query  233  LQQEQLARSLGEGHRVIHGVAGSGKTLILGYRAEHLAKVCARPILVLCYNRTLAKRLTRT  292
            +QQE LAR++G+GHRVIHGVAGSGKT+IL +R   LA   +  ILVLCYN TLA  L   
Sbjct  234  IQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLREC  293

Query  293  MASKGLADKVHVHTFHQWCRAQLVAYNADLPESGKGSDIYAAELVDRLIRAVDANIIPAG  352
            + ++GLA +V V  FH WC + +      +    K    Y+      L  AV++  I   
Sbjct  294  IEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKE---YPDKCFSALEEAVNSGKITRT  350

Query  353  QYDAVLIDEGHDFQPEWLKLVAQMVNPSTNSLLVLYDDAQSIYGNGRHNKFSFKSLGIQA  412
             YDAVL+DEGHDF++ WL L+A++ + ++ SLL++YDDAQSIY   R  +FS+ S+GIQA
Sbjct  351  GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQA  410

Query  413  QGRTTILKINYRNTQEVLELASGIASDLLKPSASDEDGVPLVAPISAGRHGPKPLLIKLP  472
            QGRT++L +NYRN + +L++A +++ + +    + E  +PLV P ++G +G  P +++ +
Sbjct  411  QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNRE--IPLVQPQAGGEEGTEPEILRCA  468

Query  473  SIQEEADYIAKHLKEAHKTGTPWSDMAVIYRDYGIGKPV--LATLRKAGIPVTYQDD--I  528
            S ++EA  +A  L   H     WSDMAV+      ++ +  + TLR   ++  ++ +   
Sbjct  469  SERDEARQVADWLEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKK  528

Query  529  TFAEKEDTVKFLTMHSCKGLEFPLVAIPGAGRAVDEGRKDEEA-RLLYVAMTRATRELVV  587
            T++ + D V +LT +S KGLEFP VA+  A+        + E   +LYVA TRATREL+V
Sbjct  529  TYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLV  588

Query  588  V  588
             
Sbjct  589  T  589