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PAthogenisity Island DataBase (PAI DB)

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Homologs of tcpR gene of AF325733

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

• Sequence Alignments

1) O3Y_03870 in NC_016944


> AF325733|15|G15|13377523|AAK20759.1|Vibrio_cholerae_395|+|21411..21866|tcpR|-|toxin-coregulated 
pilus biosynthesis protein 
R
Length=151

 Score =  203 bits (755),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%), Gaps = 0/151 (0%)

Query  1    MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM  60
            MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM
Sbjct  1    MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM  60

Query  61   NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA  120
            NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA
Sbjct  61   NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA  120

Query  121  QLIEDEVKNNKvfiigfiaiviisigvfWLM  151
            QLIEDEVKNNKVFIIGFIAIVIISIGVFWLM
Sbjct  121  QLIEDEVKNNKVFIIGFIAIVIISIGVFWLM  151

2) tcpR in NC_012578


> AF325733|15|G15|13377523|AAK20759.1|Vibrio_cholerae_395|+|21411..21866|tcpR|-|toxin-coregulated 
pilus biosynthesis protein 
R
Length=151

 Score =  203 bits (755),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%), Gaps = 0/151 (0%)

Query  1    MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM  60
            MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM
Sbjct  1    MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM  60

Query  61   NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA  120
            NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA
Sbjct  61   NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA  120

Query  121  QLIEDEVKNNKvfiigfiaiviisigvfWLM  151
            QLIEDEVKNNKVFIIGFIAIVIISIGVFWLM
Sbjct  121  QLIEDEVKNNKVFIIGFIAIVIISIGVFWLM  151

3) VCD_003496 in NC_012668


> AF325733|15|G15|13377523|AAK20759.1|Vibrio_cholerae_395|+|21411..21866|tcpR|-|toxin-coregulated 
pilus biosynthesis protein 
R
Length=151

 Score =  203 bits (755),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%), Gaps = 0/151 (0%)

Query  1    MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM  60
            MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM
Sbjct  1    MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM  60

Query  61   NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA  120
            NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA
Sbjct  61   NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA  120

Query  121  QLIEDEVKNNKvfiigfiaiviisigvfWLM  151
            QLIEDEVKNNKVFIIGFIAIVIISIGVFWLM
Sbjct  121  QLIEDEVKNNKVFIIGFIAIVIISIGVFWLM  151

4) tcpR in NC_016445


> AF325733|15|G15|13377523|AAK20759.1|Vibrio_cholerae_395|+|21411..21866|tcpR|-|toxin-coregulated 
pilus biosynthesis protein 
R
Length=151

 Score =  203 bits (755),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%), Gaps = 0/151 (0%)

Query  1    MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM  60
            MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM
Sbjct  1    MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM  60

Query  61   NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA  120
            NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA
Sbjct  61   NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA  120

Query  121  QLIEDEVKNNKvfiigfiaiviisigvfWLM  151
            QLIEDEVKNNKVFIIGFIAIVIISIGVFWLM
Sbjct  121  QLIEDEVKNNKVFIIGFIAIVIISIGVFWLM  151

5) VC0832 in NC_002505


> AF325733|15|G15|13377523|AAK20759.1|Vibrio_cholerae_395|+|21411..21866|tcpR|-|toxin-coregulated 
pilus biosynthesis protein 
R
Length=151

 Score =  203 bits (755),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%), Gaps = 0/151 (0%)

Query  1    MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM  60
            MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM
Sbjct  1    MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM  60

Query  61   NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA  120
            NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA
Sbjct  61   NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA  120

Query  121  QLIEDEVKNNKvfiigfiaiviisigvfWLM  151
            QLIEDEVKNNKVFIIGFIAIVIISIGVFWLM
Sbjct  121  QLIEDEVKNNKVFIIGFIAIVIISIGVFWLM  151

6) tcpR in NC_012582


> AF325733|15|G15|13377523|AAK20759.1|Vibrio_cholerae_395|+|21411..21866|tcpR|-|toxin-coregulated 
pilus biosynthesis protein 
R
Length=151

 Score =  203 bits (755),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%), Gaps = 0/151 (0%)

Query  1    MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM  60
            MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM
Sbjct  1    MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM  60

Query  61   NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA  120
            NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA
Sbjct  61   NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA  120

Query  121  QLIEDEVKNNKvfiigfiaiviisigvfWLM  151
            QLIEDEVKNNKVFIIGFIAIVIISIGVFWLM
Sbjct  121  QLIEDEVKNNKVFIIGFIAIVIISIGVFWLM  151

7) tcpR in NC_009457


> AF325733|15|G15|13377523|AAK20759.1|Vibrio_cholerae_395|+|21411..21866|tcpR|-|toxin-coregulated 
pilus biosynthesis protein 
R
Length=151

 Score =  203 bits (755),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%), Gaps = 0/151 (0%)

Query  1    MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM  60
            MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM
Sbjct  1    MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM  60

Query  61   NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA  120
            NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA
Sbjct  61   NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA  120

Query  121  QLIEDEVKNNKvfiigfiaiviisigvfWLM  151
            QLIEDEVKNNKVFIIGFIAIVIISIGVFWLM
Sbjct  121  QLIEDEVKNNKVFIIGFIAIVIISIGVFWLM  151