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Homologs of pilS gene of AF000001

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) pilS
( NP_458635.1 )

prepilin

NC_003198
(Salmonella enterica CT18)

9e-69

100

2) STBHUCCB_44980
( YP_005219918.1 )

Prepilin

NC_016832
(Salmonella enterica P-stx-12)

9e-69

100

3) pilS
( NP_807846.1 )

prepilin

NC_004631
(Salmonella enterica Ty2)

9e-69

100

4) TY21A_21625
( YP_007928485.1 )

prepilin

NC_021176
(Salmonella enterica Ty21a)

8e-56

100

5) pilS
( NP_928385.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

7e-38

6) EKO11_4731
( YP_005280348.1 )

PilS domain-containing protein

NC_016904
(Escherichia coli KO11FL)

4e-37

7) pilS
( YP_006137024.1 )

IncI1 conjugal transfer prepilin protein PilS

NC_017642
(Escherichia coli UMNK88)

4e-37

8) pilS
( YP_006127340.1 )

Type IVB thin major prepilin

NC_017637
(Escherichia coli W)

4e-37

9) WFL_23655
( YP_006176109.1 )

type IV prepilin cluster; prepilin

NC_017665
(Escherichia coli W)

4e-37

10) O3K_25692
( YP_006781736.1 )

type IV prepilin cluster, prepilin

NC_018659
(Escherichia coli 2011C-3493)

5e-37

11) ECSE_P1-0110
( YP_002296135.1 )

type IV prepilin PilS

NC_011419
(Escherichia coli SE11)

3e-36

12) SPAB_05362
( YP_001591468.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

1e-35

13) SEEH1578_00600
( YP_008248856.1 )

type IV pepilin

NC_021811
(Salmonella enterica 41578)

8e-36

14) CFSAN002069_23040
( YP_008253311.1 )

hypothetical protein

NC_021813
(Salmonella enterica CFSAN002069)

8e-36

15) pilS
( YP_006203609.1 )

typeIV prepilin

NC_017718
(Salmonella enterica SL1344)

8e-36

16) SeHA_A0112
( YP_002043947.1 )

typeIV prepilin

NC_011081
(Salmonella enterica SL476)

8e-36

17) pilS
( YP_006200933.1 )

typeIV prepilin

NC_017675
(Salmonella enterica ST4/74)

8e-36

18) ECL_00421
( YP_003610936.1 )

type IV prepilin

NC_014121
(Enterobacter cloacae ATCC 13047)

6e-34

19) pilS
( YP_001402683.1 )

type IV pilus biogenesis protein

NC_009708
(Yersinia pseudotuberculosis IP 31758)

5e-33

20) EJP617_06730
( YP_005817241.1 )

hypothetical protein

NC_017445
(Erwinia sp. Ejp617)

6e-33

21) pilS
( YP_005197432.1 )

type IV prepilin PilS

NC_016816
(Pantoea ananatis LMG 5342)

4e-30

22) PAGR_g3868
( YP_005994576.1 )

putative conjugative transfer outer membrane protein PilS

NC_017554
(Pantoea ananatis PA13)

4e-29

23) Ser39006_1487
( YP_008521869.1 )

PilS domain-containing protein

NC_022268
(Serratia sp. ATCC 39006)

1e-26

24) YE3500
( YP_001007661.1 )

putative type IV prepilin

NC_008800
(Yersinia enterocolitica 8081)

6e-26

• Sequence Alignments

1) pilS in NC_003198


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  252 bits (941),  Expect = 9e-69, Method: Compositional matrix adjust.
 Identities = 206/206 (100%), Positives = 206/206 (100%), Gaps = 0/206 (0%)

Query  6    MKNETEGKMMNEVSTLNPCNRPDRGMSADAGATALFILviigviaaavWSMWGKKDAGTE  65
            MKNETEGKMMNEVSTLNPCNRPDRGMSADAGATALFILVIIGVIAAAVWSMWGKKDAGTE
Sbjct  1    MKNETEGKMMNEVSTLNPCNRPDRGMSADAGATALFILVIIGVIAAAVWSMWGKKDAGTE  60

Query  66   LTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWG  125
            LTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWG
Sbjct  61   LTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWG  120

Query  126  GQIVVAPDTAggtgfnngftittnKVPQSACVsistgmsrsggtsgiKINGNNHTDAKVT  185
            GQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGTSGIKINGNNHTDAKVT
Sbjct  121  GQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGTSGIKINGNNHTDAKVT  180

Query  186  AEIASSECTADNGRTGTNTLVFNYNG  211
            AEIASSECTADNGRTGTNTLVFNYNG
Sbjct  181  AEIASSECTADNGRTGTNTLVFNYNG  206

2) STBHUCCB_44980 in NC_016832


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  252 bits (941),  Expect = 9e-69, Method: Compositional matrix adjust.
 Identities = 206/206 (100%), Positives = 206/206 (100%), Gaps = 0/206 (0%)

Query  6    MKNETEGKMMNEVSTLNPCNRPDRGMSADAGATALFILviigviaaavWSMWGKKDAGTE  65
            MKNETEGKMMNEVSTLNPCNRPDRGMSADAGATALFILVIIGVIAAAVWSMWGKKDAGTE
Sbjct  1    MKNETEGKMMNEVSTLNPCNRPDRGMSADAGATALFILVIIGVIAAAVWSMWGKKDAGTE  60

Query  66   LTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWG  125
            LTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWG
Sbjct  61   LTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWG  120

Query  126  GQIVVAPDTAggtgfnngftittnKVPQSACVsistgmsrsggtsgiKINGNNHTDAKVT  185
            GQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGTSGIKINGNNHTDAKVT
Sbjct  121  GQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGTSGIKINGNNHTDAKVT  180

Query  186  AEIASSECTADNGRTGTNTLVFNYNG  211
            AEIASSECTADNGRTGTNTLVFNYNG
Sbjct  181  AEIASSECTADNGRTGTNTLVFNYNG  206

3) pilS in NC_004631


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  252 bits (941),  Expect = 9e-69, Method: Compositional matrix adjust.
 Identities = 206/206 (100%), Positives = 206/206 (100%), Gaps = 0/206 (0%)

Query  6    MKNETEGKMMNEVSTLNPCNRPDRGMSADAGATALFILviigviaaavWSMWGKKDAGTE  65
            MKNETEGKMMNEVSTLNPCNRPDRGMSADAGATALFILVIIGVIAAAVWSMWGKKDAGTE
Sbjct  1    MKNETEGKMMNEVSTLNPCNRPDRGMSADAGATALFILVIIGVIAAAVWSMWGKKDAGTE  60

Query  66   LTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWG  125
            LTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWG
Sbjct  61   LTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWG  120

Query  126  GQIVVAPDTAggtgfnngftittnKVPQSACVsistgmsrsggtsgiKINGNNHTDAKVT  185
            GQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGTSGIKINGNNHTDAKVT
Sbjct  121  GQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGTSGIKINGNNHTDAKVT  180

Query  186  AEIASSECTADNGRTGTNTLVFNYNG  211
            AEIASSECTADNGRTGTNTLVFNYNG
Sbjct  181  AEIASSECTADNGRTGTNTLVFNYNG  206

4) TY21A_21625 in NC_021176


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  209 bits (777),  Expect = 8e-56, Method: Compositional matrix adjust.
 Identities = 181/181 (100%), Positives = 181/181 (100%), Gaps = 0/181 (0%)

Query  1    MSADAGATALFILviigviaaavWSMWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTS  60
            MSADAGATALFILVIIGVIAAAVWSMWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTS
Sbjct  26   MSADAGATALFILVIIGVIAAAVWSMWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTS  85

Query  61   GAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWGGQIVVAPDTAggtgfnngftittnK  120
            GAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNK
Sbjct  86   GAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNK  145

Query  121  VPQSACVsistgmsrsggtsgiKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYN  180
            VPQSACVSISTGMSRSGGTSGIKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYN
Sbjct  146  VPQSACVSISTGMSRSGGTSGIKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYN  205

Query  181  G  181
            G
Sbjct  206  G  206

5) pilS in NC_005126


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  149 bits (550),  Expect = 7e-38, Method: Compositional matrix adjust.
 Identities = 89/157 (57%), Positives = 124/157 (79%), Gaps = 3/157 (1%)

Query  46   LYDRKDAVVETTNLQTIISSTQGLMKGSGGYEFSHADKMTGVLIQLGGVPKSMTVRGDTT  105
            + ++KDA  E TN QT+ ++T G+MKG +GY F+ + KMT+ LIQ +G +K+MTV GD +
Sbjct  51   MWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQ-AGAAKGMTVSGDPA  109

Query  106  VGNATLWNTWGGQVKVGPSSTGG--FNNGFTVTYERVPQSACVSLATGMSRGGSASEITI  163
             G+ATLWN+WGGQ+ V+P ++GG  FNNGFT+T ++VPQSACVS++TGMSR+G++S I I
Sbjct  110  SGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGTSGIKI  169

Query  164  NNTHHADGKVTLESASTACTRNNGRTGTNKLIFTING  200
            N  +H+D+KVT E AS+ CT +NGRTGTN L+F  NG
Sbjct  170  NGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG  206

6) EKO11_4731 in NC_016904


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  147 bits (541),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 88/162 (55%), Positives = 127/162 (79%), Gaps = 3/162 (1%)

Query  45   GGLYMLRSRTGVANESSNIQTIITSTQGLLKGSDGYTFTSGAKMTGALIQMGGVPKTMTV  104
            +++  ++++ + + E +N QT+ T+T G++KG DGY+FTSGAKMT++LIQ +G +K MTV
Sbjct  46   AAVWSMWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQ-AGAAKGMTV  104

Query  105  RGTPSSGTATLYNSWGGAVTVAPAST--SGFNNGFTVTYEKVPQDACIQIATQISRTGLT  162
             G P+SG+ATL NSWGG + VAP ++  +GFNNGFT+T +KVPQ AC+ I+T +SR+G T
Sbjct  105  SGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGT  164

Query  163  NGITLNSTTHNDGKVTTEEASAQCTADNGSTGTNKLIFTING  204
            +GI +N+  H D+KVT+E AS++CTADNG TGTN L+F  NG
Sbjct  165  SGIKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG  206

7) pilS in NC_017642


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  147 bits (541),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 88/162 (55%), Positives = 127/162 (79%), Gaps = 3/162 (1%)

Query  45   GGLYMLRSRTGVANESSNIQTIITSTQGLLKGSDGYTFTSGAKMTGALIQMGGVPKTMTV  104
            +++  ++++ + + E +N QT+ T+T G++KG DGY+FTSGAKMT++LIQ +G +K MTV
Sbjct  46   AAVWSMWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQ-AGAAKGMTV  104

Query  105  RGTPSSGTATLYNSWGGAVTVAPAST--SGFNNGFTVTYEKVPQDACIQIATQISRTGLT  162
             G P+SG+ATL NSWGG + VAP ++  +GFNNGFT+T +KVPQ AC+ I+T +SR+G T
Sbjct  105  SGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGT  164

Query  163  NGITLNSTTHNDGKVTTEEASAQCTADNGSTGTNKLIFTING  204
            +GI +N+  H D+KVT+E AS++CTADNG TGTN L+F  NG
Sbjct  165  SGIKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG  206

8) pilS in NC_017637


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  147 bits (541),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 88/162 (55%), Positives = 127/162 (79%), Gaps = 3/162 (1%)

Query  45   GGLYMLRSRTGVANESSNIQTIITSTQGLLKGSDGYTFTSGAKMTGALIQMGGVPKTMTV  104
            +++  ++++ + + E +N QT+ T+T G++KG DGY+FTSGAKMT++LIQ +G +K MTV
Sbjct  46   AAVWSMWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQ-AGAAKGMTV  104

Query  105  RGTPSSGTATLYNSWGGAVTVAPAST--SGFNNGFTVTYEKVPQDACIQIATQISRTGLT  162
             G P+SG+ATL NSWGG + VAP ++  +GFNNGFT+T +KVPQ AC+ I+T +SR+G T
Sbjct  105  SGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGT  164

Query  163  NGITLNSTTHNDGKVTTEEASAQCTADNGSTGTNKLIFTING  204
            +GI +N+  H D+KVT+E AS++CTADNG TGTN L+F  NG
Sbjct  165  SGIKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG  206

9) WFL_23655 in NC_017665


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  147 bits (541),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 88/162 (55%), Positives = 127/162 (79%), Gaps = 3/162 (1%)

Query  45   GGLYMLRSRTGVANESSNIQTIITSTQGLLKGSDGYTFTSGAKMTGALIQMGGVPKTMTV  104
            +++  ++++ + + E +N QT+ T+T G++KG DGY+FTSGAKMT++LIQ +G +K MTV
Sbjct  46   AAVWSMWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQ-AGAAKGMTV  104

Query  105  RGTPSSGTATLYNSWGGAVTVAPAST--SGFNNGFTVTYEKVPQDACIQIATQISRTGLT  162
             G P+SG+ATL NSWGG + VAP ++  +GFNNGFT+T +KVPQ AC+ I+T +SR+G T
Sbjct  105  SGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGT  164

Query  163  NGITLNSTTHNDGKVTTEEASAQCTADNGSTGTNKLIFTING  204
            +GI +N+  H D+KVT+E AS++CTADNG TGTN L+F  NG
Sbjct  165  SGIKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG  206

10) O3K_25692 in NC_018659


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  146 bits (539),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 87/162 (54%), Positives = 127/162 (79%), Gaps = 3/162 (1%)

Query  45   GGLYMLRSRTGVANESSNIQTIITSTQGLLKGSDGYTFTSGTKMTGALIQMGGVPKTMTV  104
            +++  ++++ + + E +N QT+ T+T G++KG DGY+FTSG+KMT++LIQ +G +K MTV
Sbjct  46   AAVWSMWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQ-AGAAKGMTV  104

Query  105  RGTPSSGTATLYNSWGGAVTVAPAST--SGFNNGFTVTYEKVPQDACIQIATQISRTGLT  162
             G P+SG+ATL NSWGG + VAP ++  +GFNNGFT+T +KVPQ AC+ I+T +SR+G T
Sbjct  105  SGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGT  164

Query  163  NGITLNSTTHNDGKVTTEEASAQCTADNGSTGTNKLIFTING  204
            +GI +N+  H D+KVT+E AS++CTADNG TGTN L+F  NG
Sbjct  165  SGIKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG  206

11) ECSE_P1-0110 in NC_011419


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  144 bits (530),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 84/162 (52%), Positives = 128/162 (80%), Gaps = 3/162 (1%)

Query  45   GSLYALRTRANVATETANIQTIITSTQSLLKGSDGYTFTSSAKMTGALIQMGVTPSGMTV  104
            +++ +++ + + +TE +N QT+ T+T +++KG DGY+FTS+AKMT++LIQ G ++ GMTV
Sbjct  46   AAVWSMWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAG-AAKGMTV  104

Query  105  QGDETSGTATLYNAWGGAVTVAPAST--SGFNNGFTVTYDKVPQDACIQIATRISKTGLT  162
             GD +SG+ATL N+WGG + VAP ++  +GFNNGFT+T +KVPQ AC+ I+T +S++G T
Sbjct  105  SGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGT  164

Query  163  NGITLNSTAHSDGKVTTEEASTQCKADNGSTGTNKLIFTING  204
            +GI +N+  H+D+KVT+E AS++C ADNG TGTN L+F  NG
Sbjct  165  SGIKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG  206

12) SPAB_05362 in NC_010102


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  142 bits (521),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 87/190 (46%), Positives = 144/190 (76%), Gaps = 5/190 (2%)

Query  11   HQPDRGWGILEHGTIAIGTIIVLAIVGALVWSLWGKKSVAVEVSNLQTVVTNAQQLKQAQ  70
            ++PDRG +  + G+ A+  ++++++++A VWS+WGKK  + E++N QT+ TN+  + ++ 
Sbjct  20   NRPDRGMSA-DAGATALFILVIIGVIAAAVWSMWGKKDAGTELTNYQTLATNTIGMMKGV  78

Query  71   GGYNFTSGTTMTGTLIQQGGAPKAGWTIQGTASSGTATMWNGYGGQVVLAP--VASNGFN  128
            +GY FTSG+ MT+TLIQ G+A   G T+ G ++SG+AT+WN+ GGQ+V+AP   ++ GFN
Sbjct  79   DGYAFTSGAKMTDTLIQAGAAK--GMTVSGDPASGSATLWNSWGGQIVVAPDTAGGTGFN  136

Query  129  NGFSVTTQKVPQADCISITTQLGSGGAFSAITINSTDYSDGLVSAEEAGKTCSSDSGMTG  188
            NGF++TT+KVPQ+ C+SI+T ++ +G+ S+I IN+ + +D+ V+AE A+  C++D+G TG
Sbjct  137  NGFTITTNKVPQSACVSISTGMSRSGGTSGIKINGNNHTDAKVTAEIASSECTADNGRTG  196

Query  189  NNTLVFTHNG  198
             NTLVF  NG
Sbjct  197  TNTLVFNYNG  206

13) SEEH1578_00600 in NC_021811


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  142 bits (524),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 83/162 (52%), Positives = 127/162 (79%), Gaps = 3/162 (1%)

Query  45   GSLYALRTRANVATETANIQTIITSAQSLLKGSDGYTFTSSAKMTGALIQMGVIPSGMTV  104
            +++ +++ + + +TE +N QT+ T++ +++KG DGY+FTS+AKMT++LIQ G  + GMTV
Sbjct  46   AAVWSMWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGA-AKGMTV  104

Query  105  QGDKTSGTATLYNAWGGAVTVAPAST--SGFNNGFTVTYDKVPQDACIQIATRISKTGLT  162
             GD +SG+ATL N+WGG + VAP ++  +GFNNGFT+T +KVPQ AC+ I+T +S++G T
Sbjct  105  SGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGT  164

Query  163  NGITLNSTAHSDGKVTTEEASTQCKADNGSTGTNKLIFTING  204
            +GI +N+  H+D+KVT+E AS++C ADNG TGTN L+F  NG
Sbjct  165  SGIKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG  206

14) CFSAN002069_23040 in NC_021813


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  142 bits (524),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 83/162 (52%), Positives = 127/162 (79%), Gaps = 3/162 (1%)

Query  45   GSLYALRTRANVATETANIQTIITSAQSLLKGSDGYTFTSSAKMTGALIQMGVIPSGMTV  104
            +++ +++ + + +TE +N QT+ T++ +++KG DGY+FTS+AKMT++LIQ G  + GMTV
Sbjct  46   AAVWSMWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGA-AKGMTV  104

Query  105  QGDKTSGTATLYNAWGGAVTVAPAST--SGFNNGFTVTYDKVPQDACIQIATRISKTGLT  162
             GD +SG+ATL N+WGG + VAP ++  +GFNNGFT+T +KVPQ AC+ I+T +S++G T
Sbjct  105  SGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGT  164

Query  163  NGITLNSTAHSDGKVTTEEASTQCKADNGSTGTNKLIFTING  204
            +GI +N+  H+D+KVT+E AS++C ADNG TGTN L+F  NG
Sbjct  165  SGIKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG  206

15) SeHA_A0112 in NC_011081


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  142 bits (524),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 83/162 (52%), Positives = 127/162 (79%), Gaps = 3/162 (1%)

Query  45   GSLYALRTRANVATETANIQTIITSAQSLLKGSDGYTFTSSAKMTGALIQMGVIPSGMTV  104
            +++ +++ + + +TE +N QT+ T++ +++KG DGY+FTS+AKMT++LIQ G  + GMTV
Sbjct  46   AAVWSMWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGA-AKGMTV  104

Query  105  QGDKTSGTATLYNAWGGAVTVAPAST--SGFNNGFTVTYDKVPQDACIQIATRISKTGLT  162
             GD +SG+ATL N+WGG + VAP ++  +GFNNGFT+T +KVPQ AC+ I+T +S++G T
Sbjct  105  SGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGT  164

Query  163  NGITLNSTAHSDGKVTTEEASTQCKADNGSTGTNKLIFTING  204
            +GI +N+  H+D+KVT+E AS++C ADNG TGTN L+F  NG
Sbjct  165  SGIKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG  206

16) pilS in NC_017718


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  142 bits (524),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 83/162 (52%), Positives = 127/162 (79%), Gaps = 3/162 (1%)

Query  45   GSLYALRTRANVATETANIQTIITSAQSLLKGSDGYTFTSSAKMTGALIQMGVIPSGMTV  104
            +++ +++ + + +TE +N QT+ T++ +++KG DGY+FTS+AKMT++LIQ G  + GMTV
Sbjct  46   AAVWSMWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGA-AKGMTV  104

Query  105  QGDKTSGTATLYNAWGGAVTVAPAST--SGFNNGFTVTYDKVPQDACIQIATRISKTGLT  162
             GD +SG+ATL N+WGG + VAP ++  +GFNNGFT+T +KVPQ AC+ I+T +S++G T
Sbjct  105  SGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGT  164

Query  163  NGITLNSTAHSDGKVTTEEASTQCKADNGSTGTNKLIFTING  204
            +GI +N+  H+D+KVT+E AS++C ADNG TGTN L+F  NG
Sbjct  165  SGIKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG  206

17) pilS in NC_017675


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  142 bits (524),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 83/162 (52%), Positives = 127/162 (79%), Gaps = 3/162 (1%)

Query  45   GSLYALRTRANVATETANIQTIITSAQSLLKGSDGYTFTSSAKMTGALIQMGVIPSGMTV  104
            +++ +++ + + +TE +N QT+ T++ +++KG DGY+FTS+AKMT++LIQ G  + GMTV
Sbjct  46   AAVWSMWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGA-AKGMTV  104

Query  105  QGDKTSGTATLYNAWGGAVTVAPAST--SGFNNGFTVTYDKVPQDACIQIATRISKTGLT  162
             GD +SG+ATL N+WGG + VAP ++  +GFNNGFT+T +KVPQ AC+ I+T +S++G T
Sbjct  105  SGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGT  164

Query  163  NGITLNSTAHSDGKVTTEEASTQCKADNGSTGTNKLIFTING  204
            +GI +N+  H+D+KVT+E AS++C ADNG TGTN L+F  NG
Sbjct  165  SGIKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG  206

18) ECL_00421 in NC_014121


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  136 bits (500),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 90/190 (48%), Positives = 138/190 (73%), Gaps = 5/190 (2%)

Query  11   RQPDRGWGILEHGSIALFTVIVICIVGALVWGLSGKKSVAVETSNIQTVVTNAQQLKQTQ  70
             +PDRG    + G+ ALF +++I +++A VW++ GKK  + E +N QT+ TN+  + +  
Sbjct  20   NRPDRG-MSADAGATALFILVIIGVIAAAVWSMWGKKDAGTELTNYQTLATNTIGMMKGV  78

Query  71   GGYNFTSGTTMTGTLIQQGGAPKAGWTIQGTASSGTGTMWNSYGGQVVMAP--VASNGFN  128
            +GY FTSG+ MT+TLIQ G+A   G T+ G ++SG++T+WNS GGQ+V+AP   ++ GFN
Sbjct  79   DGYAFTSGAKMTDTLIQAGAAK--GMTVSGDPASGSATLWNSWGGQIVVAPDTAGGTGFN  136

Query  129  NGFSVTTQKVPQADCISIATQLGSGGAFSAISINSTDYSDGLVSAEDAGKACTADTGMTG  188
            NGF++TT+KVPQ+ C+SI+T ++ +G+ S+I IN+ + +D+ V+AE A+  CTAD G TG
Sbjct  137  NGFTITTNKVPQSACVSISTGMSRSGGTSGIKINGNNHTDAKVTAEIASSECTADNGRTG  196

Query  189  NNTLVFTHNG  198
             NTLVF  NG
Sbjct  197  TNTLVFNYNG  206

19) pilS in NC_009708


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  133 bits (488),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 77/158 (49%), Positives = 118/158 (75%), Gaps = 3/158 (1%)

Query  40   TLWNRKDIALESANVQSIITSTQGLLKGRNGYSFASGTTMTGILIQVGGVPKNMMTKGNV  99
            ++W +KD + E +N Q++ T+T G++KG +GY+F+SG+ MT+ LIQ G+ +K M   G+ 
Sbjct  50   SMWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGA-AKGMTVSGDP  108

Query  100  TASTATLWNTWGGQVIVAPVTA--NGFNHGFTLTYQKVPQSVCIAITTRLSAGGSMSGIT  157
            ++++ATLWN+WGGQ++VAP TA   GFN+GFT+T +KVPQS C++I+T +S +G+ SGI 
Sbjct  109  ASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGTSGIK  168

Query  158  INSTVYSDGNITAENAGTTCVKDTGRIGMNTLTFTVNG  195
            IN+   +D+++TAE A++ C  D GR G NTL F  NG
Sbjct  169  INGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG  206

20) EJP617_06730 in NC_017445


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  133 bits (487),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 125/160 (79%), Gaps = 4/160 (2%)

Query  38   LWSLWSKKSVAVETSNIQTIVANA-QMLKSNNGYNFTSASTMTGTLIQIGGAPKGMTIQG  96
            +WS+W+KK  + E +N QT+ +N+  M+K+ +GY FTS++ MT+TLIQ +GA+KGMT+ G
Sbjct  48   VWSMWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQ-AGAAKGMTVSG  106

Query  97   TASSGSATLWNGYGGQVVLAP--VASNGFNNGFSVTAQKVPQADCIAITTQFGSAGAFSA  154
             ++SGSATLWN+ GGQ+V+AP   ++ GFNNGF++T++KVPQ+ C++I+T  + +G+ S+
Sbjct  107  DPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGTSG  166

Query  155  ITINSTSFSDGVVSAESAGKACSSDSGMTGNNTLVFTHNG  194
            I IN+ + +D+ V+AE A+  C++D+G TG NTLVF  NG
Sbjct  167  IKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG  206

21) pilS in NC_016816


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  124 bits (452),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 83/188 (45%), Positives = 134/188 (72%), Gaps = 6/188 (3%)

Query  11   HPDRGWGFSEQGYIALGYLLVITIVVIAGWKLLHKKDTAVEVTSLQTMLSNGVAL-KGRN  69
            +PDRG   ++ G  AL  L++I ++  A W +  KKD++ E+T+ QT+ +N +++ KG +
Sbjct  21   RPDRG-MSADAGATALFILVIIGVIAAAVWSMWGKKDAGTELTNYQTLATNTIGMMKGVD  79

Query  70   GYDYSSGASMTGTLIKRDLAPSGYTVHGTPSSGTATLTNSYGGQVVIAP--VAVNGYNNA  127
            GY ++SGA MT+TLI+ + A+ G TV G P+SG+ATL NS GGQ+V+AP   +  G+NN+
Sbjct  80   GYAFTSGAKMTDTLIQAG-AAKGMTVSGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNG  138

Query  128  FSVTTQSLPQSACIDVASGMNSSGTSNTLTINSTDFSDG-ASSETISQACTADSGRTGNN  186
            F++TT+ +PQSAC+ +++GM+ SG ++ + IN+ + +D+  ++E  S  CTAD+GRTG N
Sbjct  139  FTITTNKVPQSACVSISTGMSRSGGTSGIKINGNNHTDAKVTAEIASSECTADNGRTGTN  198

Query  187  TIVVTHNG  194
            T+V   NG
Sbjct  199  TLVFNYNG  206

22) PAGR_g3868 in NC_017554


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  120 bits (440),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 86/191 (46%), Positives = 140/191 (74%), Gaps = 8/191 (4%)

Query  10   KHPDRGWGFM--EQGAIGLLYAIVITVVLGGVWKLFSAKDSTTEVSSLQTMMSNGTAL-K  66
            ++PDRG   M  + GA +L+  ++I V+ ++VW + + KD+ TE+++ QT+ +N  ++ K
Sbjct  20   NRPDRG---MSADAGATALFILVIIGVIAAAVWSMWGKKDAGTELTNYQTLATNTIGMMK  76

Query  67   GPNGYDFSSGASMTGFLIQKGGAPSGFTVHGTASSGTATLTNSYGGQVVMAP-VANSNGY  125
            G +GY F+SGA MT+ LIQ +GA+ G TV G ++SG+ATL NS GGQ+V+AP  A + G+
Sbjct  77   GVDGYAFTSGAKMTDTLIQ-AGAAKGMTVSGDPASGSATLWNSWGGQIVVAPDTAGGTGF  135

Query  126  NNGFSVTTQSVTQAGCIDIatrmasagsssslainsTDFSSGQVSSEAIGQACTADSGRT  185
            NNGF++TT+ V Q++C+ I+T M+ +G++S++ IN+ + + ++V++E  +  CTAD+GRT
Sbjct  136  NNGFTITTNKVPQSACVSISTGMSRSGGTSGIKINGNNHTDAKVTAEIASSECTADNGRT  195

Query  186  GNNTLVFTHNG  196
            G NTLVF  NG
Sbjct  196  GTNTLVFNYNG  206

23) Ser39006_1487 in NC_022268


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  112 bits (409),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 79/159 (50%), Positives = 117/159 (74%), Gaps = 3/159 (1%)

Query  41   LWGLWTQKSVAMETTNYQSLITYVRGNFKGPGGYDFTSASTMTGTVIAAGGAKGMTVQGD  100
            +W++W +K  + E TNYQ+L T   G  KG +GY FTS++ MT+T+I AG+AKGMTV GD
Sbjct  48   VWSMWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGAAKGMTVSGD  107

Query  101  VTSGSATMFNTFGGQVILTPVAsngf--nngfslssAKIPQDACISIAQQMG-NGAYSSV  157
             +SGSAT+ N+ GGQ++++P ++ G   NNGF++++ K+PQ AC+SI+  M+ +G+ S++
Sbjct  108  PASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGTSGI  167

Query  158  SINSTAHTDGNVTAETAAKECVKDSGGTGQNTLTFTVNG  196
             IN+  HTD++VTAE A+ EC  D+G TG NTL F  NG
Sbjct  168  KINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG  206

24) YE3500 in NC_008800


> AF000001|15|G12|4090835|AAC98887.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|15099..15719|pilS|-|PilS
Length=206

 Score =  110 bits (399),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 78/157 (50%), Positives = 115/157 (74%), Gaps = 3/157 (1%)

Query  41   LWNRKDIALESANVQSIITSTQGLLKSRNGYNYTSGMVMTGLLIQVGGVPKNMMTKGNVT  100
            +W +KD + E +N Q++ T+T G++K+ +GY +TSG  MT+ LIQ G+ +K M   G+ +
Sbjct  51   MWGKKDAGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGA-AKGMTVSGDPA  109

Query  101  TGTATLWNTWGGQVVVAPITA--NGFNHGFTVIYPKVPQYACiaittslstggsisgiti  158
            +G+ATLWN+WGGQ+VVAP TA   GFN+GFT+   KVPQ AC++I+T++S +G+ SGI I
Sbjct  110  SGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGTSGIKI  169

Query  159  nstAYSDGNVTAENAGTACVKDTGRSGMNTLTFTVNG  195
            N+   +D++VTAE A++ C  D GR+G NTL F  NG
Sbjct  170  NGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG  206