> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  659 bits (2493),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/419 (100%), Positives = 419/419 (100%), Gaps = 0/419 (0%)

Query  1    MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTl  60
            MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTL
Sbjct  1    MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTL  60

Query  61   aearekrdaarkllVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI  120
            AEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI
Sbjct  61   AEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI  120

Query  121  LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT  180
            LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT
Sbjct  121  LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT  180

Query  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS  240
            IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS
Sbjct  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS  240

Query  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300
            ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360
            TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419
            AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  659 bits (2493),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/419 (100%), Positives = 419/419 (100%), Gaps = 0/419 (0%)

Query  1    MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTl  60
            MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTL
Sbjct  1    MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTL  60

Query  61   aearekrdaarkllVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI  120
            AEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI
Sbjct  61   AEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI  120

Query  121  LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT  180
            LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT
Sbjct  121  LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT  180

Query  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS  240
            IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS
Sbjct  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS  240

Query  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300
            ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360
            TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419
            AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  659 bits (2493),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/419 (100%), Positives = 419/419 (100%), Gaps = 0/419 (0%)

Query  1    MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTl  60
            MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTL
Sbjct  1    MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTL  60

Query  61   aearekrdaarkllVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI  120
            AEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI
Sbjct  61   AEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI  120

Query  121  LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT  180
            LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT
Sbjct  121  LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT  180

Query  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS  240
            IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS
Sbjct  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS  240

Query  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300
            ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360
            TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419
            AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  658 bits (2488),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 418/419 (99%), Positives = 419/419 (100%), Gaps = 0/419 (0%)

Query  1    MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTl  60
            MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTL
Sbjct  1    MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTL  60

Query  61   aearekrdaarkllVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI  120
            AEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI
Sbjct  61   AEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI  120

Query  121  LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT  180
            LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT
Sbjct  121  LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT  180

Query  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS  240
            IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS
Sbjct  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS  240

Query  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300
            ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360
            TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  361  AIERQMSHKERNGMRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419
            AIERQMSHKERNG+RAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  601 bits (2270),  Expect = 3e-173, Method: Compositional matrix adjust.
 Identities = 365/419 (88%), Positives = 397/419 (95%), Gaps = 0/419 (0%)

Query  1    MLTDSKVRSAKPLAKSYKLTDSQGLYLTVSTSGAKLWYFRYRFGGKENRLAFGPYPQTTl  60
            MLTDSK+R+AKPLAKSYKLTD+QGLYLTVSTSG+KLWYFRYRF GKENRLAFGPYPQ TL
Sbjct  1    MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTL  60

Query  61   aearekrdaarkllaSGISPSQLRKSNNPAVDESRTFQYVATAWHTSSLKLWSDAHADKI  120
            AEAREKRDAARKLL SG+ PS  RK++++AVD +RTFQY+ATAWH+S LKLWS+ HADKI
Sbjct  61   AEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI  120

Query  121  LICLKRYVFPAIGAMDIAQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQGV  180
            L CLKRYVFP IGAMDIA+VETRHLAQLVK+IDDKGVHDVAGRVRQHLTKIMRHAVQQG 
Sbjct  121  LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT  180

Query  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLVKMENYKGRELTRLALELNLHVFLRSS  240
            IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELL K++ YKGRELTRLALELNLHVFLRSS
Sbjct  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS  240

Query  241  ELRFARWDEFNLKAHIWSVPAQREAVKGVRFSERGAKMKDEHLVPLSRQAVALLKQIQAI  300
            ELR+ARWDEFNLKA+IW+VPA+REAVK VRFSERGAKMKDEHLVPLS QAVALL QI+ I
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  301  SGESVFVFPGAHTLNKPMSENTINKALRVIGYDTKTEICGHGFRTMACSALNESGRWSKD  360
            +GESVFVF+GAH++NKPMSENTINKALRVIGYDTKTE+CGHGFRTMACSALNES+ WSKD
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  361  AIERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYARSYTAG  419
            AIERQMSHKERNGVRAAYVHKAEHLEAR+EMMQWWSDYLD++REGYVAPYIYAR   A+
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  599 bits (2262),  Expect = 1e-172, Method: Compositional matrix adjust.
 Identities = 358/419 (86%), Positives = 397/419 (95%), Gaps = 0/419 (0%)

Query  1    MLTDSKVRSAKPLAKSYKLTDSHGLYLTVSASGAKLWYFRYRLGGKESRLAFGPYPQTTL  60
            MLTDSK+R+AKPLAKSYKLTD++GLYLTVS+SG+KLWYFRYR+ GKE+RLAFGPYPQ TL
Sbjct  1    MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTL  60

Query  61   AEAREKRDVARKLLASGISPSQLRKANNPAVEESRTFQYVAQAWHTSSLKLWSEAHADKI  120
            AEAREKRD ARKLL SG+ PS  RKA+++AV+ +RTFQY+A AWH+S LKLWSE HADKI
Sbjct  61   AEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI  120

Query  121  LTCLKRYVFPTIGAMDIAQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQGV  180
            LTCLKRYVFP IGAMDIA+VETRHLAQLVK+IDDKGVHDVAGRVRQHLTKIMRHAVQQG 
Sbjct  121  LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT  180

Query  181  IKYNPAYDLDGVVTPVVTQHHPAlplkrlpellekMENYKGRMLTRLALELNLHVFLRSS  240
            IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELL+K++ YKGR LTRLALELNLHVFLRSS
Sbjct  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS  240

Query  241  ELRFARWDEFNLKAHIWSVPAQREAVNGVRFSERGAKMKDEHLVPLSRQAVALLKQIQAL  300
            ELR+ARWDEFNLKA+IW+VPA+REAV+ VRFSERGAKMKDEHLVPLS QAVALL QI+ +
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  301  SGESVFVFPGAHTLNKPMSENTVNKALRVIGYDTKTEICGHGFRTMACSALNESGRWSKD  360
            +GESVFVF+GAH++NKPMSENT+NKALRVIGYDTKTE+CGHGFRTMACSALNES+ WSKD
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  361  AIERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYARSHSAG  419
            AIERQMSHKERNGVRAAYVHKAEHLEAR+EMMQWWSDYLD++REGYVAPYIYAR H A+
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  596 bits (2253),  Expect = 7e-172, Method: Compositional matrix adjust.
 Identities = 359/419 (86%), Positives = 397/419 (95%), Gaps = 0/419 (0%)

Query  1    MLTDSKVRSAKPLAKSYKLTDSQGLYLTVSTSSAKLWYFRYRFGGKENRLAFGPYPQITl  60
            MLTDSK+R+AKPLAKSYKLTD+QGLYLTVSTS++KLWYFRYRF GKENRLAFGPYPQ+TL
Sbjct  1    MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTL  60

Query  61   aearekrdaarkllaSGISPSQLRKSNNPAVDESHTFQYVTMAWHSSCLKLWSEAHADKI  120
            AEAREKRDAARKLL SG+ PS  RK++++AVD ++TFQY++ AWHSSCLKLWSE HADKI
Sbjct  61   AEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI  120

Query  121  LTCLKRYVFPAIGAMDIVQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQGV  180
            LTCLKRYVFP IGAMDI +VETRHLAQLVK+IDDKGVHDVAGRVRQHLTKIMRHAVQQG 
Sbjct  121  LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT  180

Query  181  IKYNPAYDLDGVVTPVATQHHPALPLKRLPELLGKMENYKGRMLTRMALELNLHVFLRSS  240
            IKYNPAYDLDGVVTPV TQHHPALPLKRLPELL+K++ YKGR LTR+ALELNLHVFLRSS
Sbjct  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS  240

Query  241  ELRFARWDEFNLKAHIWSVPAQREAVNGVRFSERGAKMKDEHLVPLSRQAVALLKQIQAI  300
            ELR+ARWDEFNLKA+IW+VPA+REAV+ VRFSERGAKMKDEHLVPLS QAVALL QI+ I
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  301  SGESVFVFPGAHTLNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESGRWSKD  360
            +GESVFVF+GAH++NKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNES+ WSKD
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  361  AIERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSNYLDVNRDGYVAPYIYARSYTAG  419
            AIERQMSHKERNGVRAAYVHKAEHLEAR+EMMQWWS+YLD++R+GYVAPYIYAR   A+
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  568 bits (2145),  Expect = 2e-163, Method: Compositional matrix adjust.
 Identities = 359/419 (86%), Positives = 396/419 (95%), Gaps = 0/419 (0%)

Query  1    MLTDSKVRSAKPLTKSYKLTDSQGLYLTVSPSGAKLWYFRYRFGGKESRLAFGPYPQTTl  60
            MLTDSK+R+AKPL+KSYKLTD+QGLYLTVS SG+KLWYFRYRF GKE+RLAFGPYPQ TL
Sbjct  1    MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTL  60

Query  61   aearekrdaarkllaSGISPSQLRKANNPAVDESRTFQYVAQAWHTSSLKLWSDAHADKI  120
            AEAREKRDAARKLL SG+ PS  RKA+++AVD +RTFQY+A AWH+S LKLWS+ HADKI
Sbjct  61   AEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI  120

Query  121  LTCLKRYVFPTIGAMDISQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQGV  180
            LTCLKRYVFP IGAMDI++VETRHLAQLVK+IDDKGVHDVAGRVRQHLTKIMRHAVQQG 
Sbjct  121  LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT  180

Query  181  IKYNPAYDLDGVVTLVVTQHHPAlplkrlpellekIESYKGRMLTRLALELNLHVFLRSS  240
            IKYNPAYDLDGVVT VVTQHHPALPLKRLPELL+KI++YKGR LTRLALELNLHVFLRSS
Sbjct  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS  240

Query  241  ELRFARWDEFNLKAHIWSVPAQREAVNGVRFSERGAKMKDEHLVPLSRQAVALLKQIQAL  300
            ELR+ARWDEFNLKA+IW+VPA+REAV+ VRFSERGAKMKDEHLVPLS QAVALL QI+ +
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  301  SGESVFVFPGAHTLNKPMSENTINKALRVIGYDTKTEICGHGFRTMACSALNESGRWSKD  360
            +GESVFVF+GAH++NKPMSENTINKALRVIGYDTKTE+CGHGFRTMACSALNES+ WSKD
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  361  AIERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYARSYMAG  419
            AIERQMSHKERNGVRAAYVHKAEHLEAR+EMMQWWSDYLD++REGYVAPYIYAR   A+
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  567 bits (2142),  Expect = 4e-163, Method: Compositional matrix adjust.
 Identities = 358/419 (86%), Positives = 394/419 (95%), Gaps = 0/419 (0%)

Query  1    MLTDSKVRSAKHLAKSYKLTDSQGLYLTVSPSGAKLWYFRYRFGGKENRLAFGPYPQITl  60
            MLTDSK+R+AK LAKSYKLTD+QGLYLTVS SG+KLWYFRYRF GKENRLAFGPYPQ+TL
Sbjct  1    MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTL  60

Query  61   aearekrdaarkllaSGLSPSQLRKSNNPAVEESRTFQYVAMTWHTSSLKLWSEAHADKI  120
            AEAREKRDAARKLL SG+ PS  RK++++AV+ +RTFQY+A +WH+S LKLWSE HADKI
Sbjct  61   AEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI  120

Query  121  LTCLKRYVFPAIGSMDIAQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQGV  180
            LTCLKRYVFP IG+MDIA+VETRHLAQLVK+IDDKGVHDVAGRVRQHLTKIMRHAVQQG 
Sbjct  121  LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT  180

Query  181  IKYNPAYDLDGVVTPVVTQHHPAlplkrlpellekIENYKGRMLTRLALELNLHVFLRSS  240
            IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELL+KI+ YKGR LTRLALELNLHVFLRSS
Sbjct  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS  240

Query  241  ELRFARWDEFNLKAHIWSVPAQREAVNGVRFSERGAKMKDEHLVPLSRQAVALLKQIQAY  300
            ELR+ARWDEFNLKA+IW+VPA+REAV+ VRFSERGAKMKDEHLVPLS QAVALL QI+  
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  301  SGESVFVFPGAHTLNKPMSENTINKALRVIGYDTKTEICGHGFRTMACSALNESGRWSKD  360
            +GESVFVF+GAH++NKPMSENTINKALRVIGYDTKTE+CGHGFRTMACSALNES+ WSKD
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  361  AIERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYARNYTVG  419
            AIERQMSHKERNGVRAAYVHKAEHLEAR+EMMQWWSDYLD++REGYVAPYIYAR    +
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  566 bits (2138),  Expect = 8e-163, Method: Compositional matrix adjust.
 Identities = 359/419 (86%), Positives = 395/419 (95%), Gaps = 0/419 (0%)

Query  1    MLTDSKVRSAKPLAKSYKLTDSQGLYLTVSTSGAKLWYFRYRFGGKENRLAFGPYPQTTl  60
            MLTDSK+R+AKPLAKSYKLTD+QGLYLTVSTSG+KLWYFRYRF GKENRLAFGPYPQ TL
Sbjct  1    MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTL  60

Query  61   aearekrdaarkllaSGISPSQLRKTNNPAVDESHTFQSVTMAWHTSSLKLWSDAHADKI  120
            AEAREKRDAARKLL SG+ PS  RK++++AVD ++TFQ ++ AWH+S LKLWS+ HADKI
Sbjct  61   AEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI  120

Query  121  LICLKRYVFPAIGAMDIAQVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGV  180
            L CLKRYVFP IGAMDIA+VETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQG 
Sbjct  121  LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT  180

Query  181  IKYNPAYDLDGVVTPVATQHHPAlplkrlpellekIESYKGRMLTRLALELNLHVFLRSS  240
            IKYNPAYDLDGVVTPV TQHHPALPLKRLPELL+KI++YKGR LTRLALELNLHVFLRSS
Sbjct  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS  240

Query  241  ELRFARWDEFNLKAHIWSVPAQREAVNDVRFSERGAKMKDEHLVPLSRQAVALLKQIQAI  300
            ELR+ARWDEFNLKA+IW+VPA+REAV++VRFSERGAKMKDEHLVPLS QAVALL QI+ I
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  301  SGKSVFVFPGAHTLNKPMSENTINKALRVIGYDTKSEVCGHGFRTMACSALNESGRWSKD  360
            +G SVFVF+GAH++NKPMSENTINKALRVIGYDTK+EVCGHGFRTMACSALNES+ WSKD
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  361  AIERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYARSYAAG  419
            AIERQMSHKERNGVRAAYVHKAEHLEAR+EMMQWWSDYLD++REGYVAPYIYAR   A+
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  563 bits (2127),  Expect = 6e-162, Method: Compositional matrix adjust.
 Identities = 358/419 (86%), Positives = 392/419 (94%), Gaps = 0/419 (0%)

Query  1    MLTDSKVRSAKPLAKSYKLTDSQGLYLTVSPSGAKLWYFRYRFGGKENRLAFGPYPQTTl  60
            MLTDSK+R+AKPLAKSYKLTD+QGLYLTVS SG+KLWYFRYRF GKENRLAFGPYPQ TL
Sbjct  1    MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTL  60

Query  61   aearekrdaarkllaSGISPSQLRKTNNLAADESRTFQYLAQTWHTSSLKLWSEAHADKI  120
            AEAREKRDAARKLL SG+ PS  RK+++ A D +RTFQY+A +WH+S LKLWSE HADKI
Sbjct  61   AEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI  120

Query  121  LTCLKRYVFPAIGAMDIAQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQGV  180
            LTCLKRYVFP IGAMDIA+VETRHLAQLVK+IDDKGVHDVAGRVRQHLTKIMRHAVQQG 
Sbjct  121  LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT  180

Query  181  IKYNPAYDLDGVVTPVATQHHPAlplkrlpellekMENYKGRMLTRLALELNLHVFLRSS  240
            IKYNPAYDLDGVVTPV TQHHPALPLKRLPELL+K++ YKGR LTRLALELNLHVFLRSS
Sbjct  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS  240

Query  241  ELRFARWDEFNLKAHLWSVPAQREAVDGVRFSERGAKMKDEHLVPLSRQAVALLKQIQAI  300
            ELR+ARWDEFNLKA++W+VPA+REAV  VRFSERGAKMKDEHLVPLS QAVALL QI+ I
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  301  SGESVFVFPGAHTLNKPMSENTINKALRVIGYDTKSEVCGHGFRTMACSALNESGRWSKD  360
            +GESVFVF+GAH++NKPMSENTINKALRVIGYDTK+EVCGHGFRTMACSALNES+ WSKD
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  361  AIERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYARSYRGE  419
            AIERQMSHKERNGVRAAYVHKAEHLEAR+EMMQWWSDYLD++REGYVAPYIYAR  ++ 
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  447 bits (1684),  Expect = 7e-127, Method: Compositional matrix adjust.
 Identities = 254/419 (61%), Positives = 346/419 (83%), Gaps = 2/419 (0%)

Query  3    LSDAKIRSIKPSDKPFKLTDSQGLYLLVNPGGSRLWYLKYRFNRKESRIALGAYPQVSLS  62
            L+D+KIR+ KP  K++KLTD+QGLYL V+ +GS+LWY++YRF+ KE+R+A+G+YPQV+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQRDGIRKLLAQNINPAQQRMTEKAAASPEKCFEAVAVAWHKTNKK-WSADYAERIL  121
            +AR++RD+ RKLL   + P+  R +EKAA    + F+ +A AWH +  K WS D A++IL
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMKNHIFPAIGHLPVTMLKTQHFTALLKVIEDKGFLEVASRTRQQLCNIMRYAVQQGLT  181
            + +K  +FP IG + ++ + T+H++ L+K I+DKG  +VA+R RQ+L +IMR AVQQG  
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  ESNPAQHLEGVTAPPVKNHYPAlplerlpelferIGDYQQGRQLTRLAVVLTLHLFIRSS  241
              NPA +L+GV +P V +H PALPL RLPEL+++I +Y+ GR+LTRLA+ L LH+F+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYK-GRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFRNKIWTIPATRETIEKVRFSGRGAKMRTPHIVPLSRQAIAILKQIKEI  301
            ELR+ARW E++++ +IWT+PA RE++ +VRFS RGAKM+  H+VPLS QA+A+L QIKEI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGHLELVFPGDHNPYKPMSENTINRALRLMGYDTKTDVCGHGFRTMACSALVESELWSRD  361
            +G+  +VF+G H+  KPMSENTIN+ALR++GYDTKT+VCGHGFRTMACSAL ES LWS+D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNSVRAAYIHRAEHLDARKDMMQWWSDYLDVSREGYVAPYIYARRHKAA  420
            A+ERQMSH+ERN+VRAAY+H+AEHL+AR +MMQWWSDYLD+SREGYVAPYIYARRHKAA
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  446 bits (1679),  Expect = 2e-126, Method: Compositional matrix adjust.
 Identities = 231/411 (57%), Positives = 334/411 (82%), Gaps = 2/411 (0%)

Query  3    LNGSKIRNLKPSAKPFKVSDSHGLYLLVNPSGSRLWYLKYRINRKESRLGLGAYPDVSLA  62
            L +SKIR  KP AK++K++D++GLYL V+ SGS+LWY++YR++ KE+RL++G+YP+V+LA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQRDGIRKLLVQNINPAQQRSAERTTSSPEKTFKHVALEWHKS-NRTWSENHAARLL  121
            +AR++RD+ RKLLV  + P+  R AE+++    +TF+ +A  WH S  + WSE+HA ++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMNNHIFPIIGHLPVSELKPRHFIDLLKGIEKKGSLEVAARTRQHMCSIMRHAVHQELI  181
            + ++  +FP IG + ++E+  RH+ +L+K+I+ KG  +VA+R RQH+  IMRHAV+Q  I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  DNNPAANLDGIIAPPVKRHYPALPLEQLSELLTRIEDYQQGRELTRLAVSLTLHLFIRSS  241
              NPA +LDG+++P V +H PALPL +L+ELL +I++Y+ GRELTRLA+ L LH+F+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYK-GRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFRNKIWTIPATREAIPGVRYSGRGAKMRTPHIVPLSHQSITILKQIREI  301
            ELR+ARW E++++ +IWT+PA REA+  VR+S RGAKM+  H+VPLS Q++++L QI+EI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGHQELVFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLWSQD  361
            +G+  +VF+G H+  KPM ENT+NKALR++GYDTK E+CGHGFR+MACSAL ES+LWS+D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLNACREAYIPPYI  412
            A+ERQMSH+ERN+VRAAY+HKAE L+AR  MMQWWSDYL+  RE+Y++PYI
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYI  411

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  441 bits (1662),  Expect = 3e-125, Method: Compositional matrix adjust.
 Identities = 251/419 (60%), Positives = 345/419 (83%), Gaps = 2/419 (0%)

Query  3    LSDAKIRSIKPSDKPFKLTDSQGLYLLVNPGGSRLWYLKYRFNRKESRIALGAYPQVSLS  62
            L+D+KIR+ KP  K++KLTD+QGLYL V+ +GS+LWY++YRF+ KE+R+A+G+YPQV+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQRDGIRKLLAQNINPAQQRMTEKAAASPEKCFEAVAVAWHKTNKK-WSADYAERIL  121
            +AR++RD+ RKLL   + P+  R +EKAA    + F+ +A AWH +  K WS D A++IL
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMKNHIFPAIGHMPVTMLKTQHFTALLKVIEDKGFLEVASRTRQQLCNIMRYAVQQGLT  181
            + +K  +FP IG M ++ + T+H++ L+K I+DKG  +VA+R RQ+L +IMR AVQQG  
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  ENNPAQHLEGVTAPPVKNHYPAlplerlpelferIGDYQQGRQLTRLAVVLTLHLFIRSS  241
              NPA +L+GV +P V +H PALPL RLPEL+++I +Y+ GR+LTRLA+ L LH+F+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYK-GRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFRHKIWTIPATRETIEKVRFSGRGAKMRTPHIVPLSWQSIAILKQIQEI  301
            ELR+ARW E++++ +IWT+PA RE++ +VRFS RGAKM+  H+VPLS Q++A+L QI+EI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGHLELVFPGDHNPYKPMSENTINRALRLMGYDTKADVCGHGFRAMACSALVESELWSRD  361
            +G+  +VF+G H+  KPMSENTIN+ALR++GYDTK++VCGHGFR+MACSAL ES LWS+D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNSVRAAYIHRAEHLDARKAMMQWWSDYLDVSREGYVAPYIYARRHKAA  420
            A+ERQMSH+ERN+VRAAY+H+AEHL+AR  MMQWWSDYLD+SREGYVAPYIYARRHKAA
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  441 bits (1660),  Expect = 5e-125, Method: Compositional matrix adjust.
 Identities = 240/419 (58%), Positives = 343/419 (82%), Gaps = 2/419 (0%)

Query  3    LNDSKIRNLKPSVKPFKVSDSHGLYLLVNPGGSRLWYLKYRINKKESRLGLGAYPDVSLA  62
            L DSKIR  KP  K++K++D++GLYL V+ +GS+LWY++YR++ KE+RL++G+YP+V+LA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQRDGIRKLLVQNINPAQQRSAERATALPEETFKSVALSWHKSN-KAWSENHAVRLL  121
            +AR++RD+ RKLLV  + P+  R AE+A+     TF+ +A +WH S  K WSE+HA ++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMNNHIFPIIGHLPVSELKPRHFIDllkgiekkglleVAARSRQHMCNIMRHAVHQELI  181
            + ++  +FP IG + ++E+  RH+ +L+K+I+ KG+ +VA+R RQH+ +IMRHAV+Q  I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  DNNPAANLDGIIAPPVKRHYPALPLERLSELLTRIGDYKQGRELTRLAVSLTLHLFIRSS  241
              NPA +LDG+++P V +H PALPL RL+ELL +I +YK GRELTRLA+ L LH+F+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYK-GRELTRLALELNLHVFLRSS  240

Query  242  ELRFAHWSEIDFKNNIWTIPANREAIPGVRYSGRGAKMRTPHIVPLSSQSITILKQIREI  301
            ELR+A+W E+++K  IWT+PA+REA+  VR+S RGAKM+  H+VPLS+Q++++L QI+EI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGHQELVFPGDHNPYKPMCENTINKALRLMGYDTKSDICGHGFRAMACSALMESGLWAQD  361
            +G+  +VF+G H+  KPM ENTINKALR++GYDTK+++CGHGFR+MACSAL ES+LW++D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDTNREEYVAPYIYAQQHETA  420
            A+ERQMSH+ERN+VRAAY+HKAE L+AR  MMQWWSDYLD +RE YVAPYIYA++H +A
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  433 bits (1629),  Expect = 1e-122, Method: Compositional matrix adjust.
 Identities = 238/414 (58%), Positives = 338/414 (82%), Gaps = 2/414 (0%)

Query  3    LNDSKIRNLKPSAKPFKVSDSHGLYLLVNPGGSRLWYLKYRINRKESRLGLGTYPDVSLA  62
            L DSKIR  KP AK++K++D++GLYL V+ +GS+LWY++YR++ KE+RL++G YP+V+LA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQRDGIRKLLAQNINPAHQRAAEKASRSPEKSFRDVALDWHKS-NRTWSENHATRLL  121
            +AR++RD+ RKLL   + P+  R AEKA+    ++F+ +A  WH S  + WSE+HA ++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMNNYLFPVIGHLPVTELKPRHFIDLLRGIEKKGLLEVASRTRQHLCNIMRHAVHQELI  181
            + ++ Y+FP IG + ++E+  RH+ +L+++I+ KG+ +VA+R RQHL +IMRHAV+Q  I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  EHNPAANLDGIIATPVKRHYPAlpleqlpellTRIEDYRQGRELTRLAVSLTLHLFIRSS  241
              NPA +LDG+++  V +H PALPL +LPELL +I++Y+ GRELTRLA+ L LH+F+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYK-GRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFRNNIWTIPATRKAIPGVRYSGRGAKMRTPHIVPLSRQTIAILRQIQEI  301
            ELR+ARW E++++  IWT+PA R A+  VR+S RGAKM+  H+VPLS Q++A+L QI+EI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SRHQVLIFPGAHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLWSQD  361
            + + V++F+GAH+  KPM ENT+NKALR++GYDTK E+CGHGFR+MACSAL ES+LWS+D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNSVRAAYIHKAQYLDARKAMMQWWSDYLDMNREGYVAPYVYAR  415
            A+ERQMSH+ERN+VRAAY+HKA+ L+AR  MMQWWSDYLDM+REGYVAPY+YAR
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYAR  414

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  433 bits (1629),  Expect = 1e-122, Method: Compositional matrix adjust.
 Identities = 232/414 (57%), Positives = 337/414 (82%), Gaps = 2/414 (0%)

Query  3    LNDSKIRNLKPSAKPFKVSDSHGLYLLVNPGGSRLWYLKYRINRKESRLGLGAYPDVSLA  62
            L DSKIR  KP AK++K++D++GLYL V+ +GS+LWY++YR++ KE+RL++G+YP+V+LA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQRDGIRKLLAHNINPAQQRSAERSTSSPDKTFKYVALDWHKS-NRTWSENHASRLL  121
            +AR++RD+ RKLL   + P+  R AE+++    +TF+Y+A  WH S  + WSE+HA ++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMNNHIFPVIGHLPVAELKPRHFIDLLKGIEQKGLLEVAARTRQHMCNIMRHAIHQELI  181
            + ++  +FP IG + +AE+  RH+ +L+K+I++KG+ +VA+R RQH+ +IMRHA++Q  I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  ENNPAANLEGIISPPVKRHYPALQLERLPELLARIEDYKQGREltrlavlltlhlFIRSS  241
              NPA +L+G+++P V +H PAL L RLPELL +I++YK GRELTRLA+ L LH+F+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYK-GRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFKNRIWTIPATREAISGVRYSGRGAKMRTPHIVPLSRQSIAILKQIREI  301
            ELR+ARW E+++K RIWT+PA REA+  VR+S RGAKM+  H+VPLS Q++A+L QI+EI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGHRVLIFPGDHNPYKPMCENTVNKALRLMRYDTKNEICGHGLRAMACSALMESGLWAQD  361
            +G+ V++F+G H+  KPM ENT+NKALR++ YDTK E+CGHG+R+MACSAL ES+LW++D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNSVRAAYIHKAEYLDSRKAMMQWWSDYLDMCRKAYAPPYICGK  415
            A+ERQMSH+ERN+VRAAY+HKAE L++R  MMQWWSDYLDM R +Y +PYI ++
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYAR  414

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  431 bits (1624),  Expect = 3e-122, Method: Compositional matrix adjust.
 Identities = 236/414 (58%), Positives = 339/414 (82%), Gaps = 2/414 (0%)

Query  3    LNDTKIRSLKPSAKPFKISDSHGLYLLVNPGGSRLWYLKYRINRKESRLGLGAYPDVSLA  62
            L D+KIR+ KP AK++K++D++GLYL V+ +GS+LWY++YR++ KE+RL++G+YP+V+LA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQRDGIRKLLAQNINPAQQRSAERATALLEETFKSVALSWHKS-NRTWSENHATRLL  121
            +AR++RD+ RKLL   + P+  R AE+A+     TF+ +A +WH S  + WSE+HA ++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMNNHIFPIIGHLPVSELKPRHFIDLLKGIEQKGLLEVAARTRQHMCNIMRHAVHQELI  181
            + ++  +FP IG + ++E+  RH+ +L+K+I++KG+ +VA+R RQH+ +IMRHAV+Q  I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  KHNPAANLDGIIAPPVKRHYPAlpleqlpellTRIKDYKQGRELTRLAVSLTLHLFIRSS  241
            K NPA +LDG+++P V +H PALPL +LPELL +I++YK GRELTRLA+ L LH+F+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYK-GRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFKNRIWTIPATRESIPGVRYSGRGAKMRIPHIVPLSCQSIAILKQIREI  301
            ELR+ARW E+++K RIWT+PA RE++  VR+S RGAKM+  H+VPLS Q++A+L QI+EI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGHQVLVFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLWAQD  361
            +G+ V+VF+G H+  KPM ENT+NKALR++GYDTK E+CGHGFR+MACSAL ES+LW++D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDMCRKEYAPPYICGK  415
            A+ERQMSH+ERN+VRAAY+HKAE L+AR  MMQWWSDYLDM R  Y +PYI ++
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYAR  414

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  428 bits (1613),  Expect = 2e-121, Method: Compositional matrix adjust.
 Identities = 234/414 (57%), Positives = 337/414 (82%), Gaps = 2/414 (0%)

Query  3    INDSKIRNLKPSTKPYKVSDSHGLYLLINPGGSRLWYLKYRINRKESRLGLGTYPDVSLA  62
            + DSKIR  KP +K+YK++D++GLYL ++ +GS+LWY++YR++ KE+RL++G YP+V+LA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQRDSIRKLLAQNINPAHQQAAEKAPRSPEKSFRDVALDWHKSN-RTWSESHATRLL  121
            +AR++RD+ RKLL   + P+  + AEKA+    ++F+ +A  WH S  + WSE HA ++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMNNHLFPVIGHLPVTELKPRHFISLLRGIEKKGLLEVAARTRQHLCNIMRHAVHQELI  181
            + ++  +FP IG + ++E+  RH+  L+++I+ KG+ +VA+R RQHL +IMRHAV+Q  I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  EHNPAANLDGIIASPVKRHYPAlpleqlpellTRIEDYRQGRELTRLAVSLTLHLFIRSS  241
              NPA +LDG++++ V +H PALPL +LPELL +I++Y+ GRELTRLA+ L LH+F+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYK-GRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFRNHIWTIPATRKAIPGVRYSGRGAKMRTPHIVPLSRQAIAILRQIQEI  301
            ELR+ARW E++++ +IWT+PA R A+  VR+S RGAKM+  H+VPLS QA+A+L QI+EI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGHQVLIFPGAHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESSLWAQD  361
            +G+ V++F+GAH+  KPM ENT+NKALR++GYDTK E+CGHGFR+MACSAL ES+LW++D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDMNRENYVAPYVYAQ  415
            A+ERQMSH+ERN+VRAAY+HKAE L+AR  MMQWWSDYLDM+RE YVAPY+YA+
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYAR  414

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  427 bits (1608),  Expect = 7e-121, Method: Compositional matrix adjust.
 Identities = 252/419 (61%), Positives = 341/419 (82%), Gaps = 2/419 (0%)

Query  3    LNDSKIRNFKSPSRPVKLSDSHGLYLLVKPGGSRIWYLKYRFNGKESRVSLGAYPLVSLA  62
            L DSKIR  K+ +++ KL+D++GLYL V  +GS++WY++YRF+GKE+R+++G+YP V+LA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARLQRDGIRKLLAQNISPAQQRVaakaaaSPEKCFEAVALAWHKTNKK-WSADYAERIL  121
            EAR +RD+ RKLL   + P+  R A KAA    + F+ +A AWH +  K WS D A++IL
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMKNHIFPAIGHMPVTLLKTQHFTALLKVIEDKGFLEVASRTRQQLCNIMRYAVQQGFI  181
            + +K  +FP IG M ++ + T+H++ L+K I+DKG  +VA+R RQ+L +IMR AVQQG I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  ENNPAQHLEGVTAPPVKNHYPAlplerlpellerIGDYQQGRQLTRLAVVLTLHLFIRSS  241
              NPA +L+GV +P V +H PALPL RLPELL++I +Y+ GR+LTRLA+ L LH+F+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYK-GRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFRNKIWTIPATRETIEKVRFSGRGAKMHTPHIVPLSRQAIAILKQINEI  301
            ELR+ARW E++++ +IWT+PA RE++ +VRFS RGAKM   H+VPLS QA+A+L QI+EI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGHLELVFPGDHNPYKPMSENTINRALRLMGYDTKTDVCGHGFRAMACSALVESELWSRD  361
            +G+  +VF+G H+  KPMSENTIN+ALR++GYDTKT+VCGHGFR+MACSAL ES LWS+D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNSVRAAYIHRAEHLDARKDMMQWWSDYLDVSREGYVAPYIYARRHKAA  420
            A+ERQMSH+ERN+VRAAY+H+AEHL+AR +MMQWWSDYLD+SREGYVAPYIYARRHKAA
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  426 bits (1605),  Expect = 1e-120, Method: Compositional matrix adjust.
 Identities = 245/419 (59%), Positives = 338/419 (81%), Gaps = 2/419 (0%)

Query  3    LNDSKIRNLKPSSKPVKLSDSHGLYLLVNQGGSRIWYLKYRFSGKESRVSLGAYPLVSLA  62
            L DSKIR  KP +K+ KL+D++GLYL V+ +GS++WY++YRF GKE+R+++G+YP V+LA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARQRRDDIRKLLTQNINPAHQRMSDKAAASPEKYFKAVALAWHKTNKK-WSPDYAARIL  121
            EAR++RD  RKLL   + P+  R ++KAA    + F+ +A AWH +  K WS D A +IL
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMENHIFPAIGHLPVTTLKTQNFTALLRVIEDKGFLEVASRTRQQLCNIMRYAVQQGFT  181
            + +   +FP IG + ++ + T++++ L++ I+DKG  +VA+R RQ+L +IMR AVQQG  
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  ENNLAQHLEGVTAPPVKNHYPAlplerlpelferIGDYQQGRQLTRLAVVLTLHLFIRSS  241
              N A +L+GV +P V +H PALPL RLPEL+++I +Y+ GR+LTRLA+ L LH+F+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYK-GRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWGEIDFRNKIWTIPATREAIEKVRFSGRGAKMRTPYIVPLSRQAIAILKQIKEI  301
            ELR+ARW+E++++ +IWT+PA REA+ +VRFS RGAKM+   +VPLS QA+A+L QIKEI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGHLELVFPGDHNPYKPMSENTVNRALRLMGYDTKTDVCGHGFRTMACSALVETELWSRD  361
            +G+  +VF+G H+  KPMSENT+N+ALR++GYDTKT+VCGHGFRTMACSAL E+ LWS+D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  TVERQMSHQERNSVRAAYIHRAEHLDARTAMMQWWSDYLDVSREGYVAPYIYARRHKAA  420
            ++ERQMSH+ERN+VRAAY+H+AEHL+AR  MMQWWSDYLD+SREGYVAPYIYARRHKAA
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  426 bits (1602),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 235/414 (57%), Positives = 321/414 (78%), Gaps = 1/414 (0%)

Query  3    LTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEKKLAFGAYPTVTLA  62
            LTD+ IR AKPL K+YKL+DAQGLYL +  +GSKLW ++YRF GKE++LAFG+YP VTLA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   NARKLREEARAVLSAGDDPGVKKQQEKQAKKSGNTFEEVARRWLAGNIR-WTEHHAAKIL  121
            +AR  R+ AR +L +G  P++ ++ EK A  +  TF+ +A  W ++ ++ W+E+HA KIL
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  RSLELHVFPLIGNIPVADLKTADLLIPLRVAEKKGNLETAARSQQRTTAIMRYAVQESLI  181
              L   VFP IG + +A++ T +L   ++  + KG  + A+R +Q+ T IMR AVQ++ I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  ASNPANDLTGAIAPPPKNHYPALPLEQIPQLLERLEGYSGRLLTRLAVQLNLLIFIRSSE  241
              NPA DL G ++P   +H PALPL ++P+LL++++GY GR LTRLA++LNL +F+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRFARWTEIDLDGAMWTIPTQRESIPGVRYSERGAKMKTPHLVPLSKQAVTVLKQLKLLS  301
            LR+ARW E++L + +WT+P++RE++  VR+SERGAKMK  HLVPLS QAV++L Q+K ++
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GNSELLFPGDHDPRKPMSENTINKALRVMGYDTKVDVCGHGFRTMACSALIESGRWSKDA  361
            G+S ++F+G H   KPMSENTINKALRV+GYDTK +VCGHGFRTMACSAL ES+ WSKDA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNNVRAAYIHKAEHLDERTQMMQWWSDYLDACRQKFVAPYRYDRQ  415
            +ERQMSH+ERN VRAAY+HKAEHL+ R +MMQWWSDYLD  R+ +VAPY Y R+
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARR  415

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  424 bits (1597),  Expect = 5e-120, Method: Compositional matrix adjust.
 Identities = 233/411 (57%), Positives = 334/411 (82%), Gaps = 2/411 (0%)

Query  3    LTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRINGKESRIALGAYPAVSLS  62
            LTD+KIR+ KP  K++K++D++GLYL V  +GS+ WY++YR++GKE+R+A+G+YP V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALAWHKSNRK-WSQNTADRLL  121
            +AR++R++ RK+L   + P   R AE+++    + F+ +A AWH S  K WS++ AD++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQGLI  181
            + ++  +FP IG + ++E+  RH+ +L+K I++KG+ +VA+R RQHL++IMRHAV+QG I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  DTNPAANLGGVTTPPVRRHYPAlplerlpellerIEAYHQGRELTRLAVLLMLHVFIRSS  241
              NPA +L+GV TP V +H PALPL RLPELL++I++Y +GRELTRLA+ L LHVF+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGY-KGRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDI  301
            ELR+ARW E+++  R+WT+PA RE++  VR+S RGAKM+  H+VPLS Q++A+L QIK+I
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  TGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKD  361
            TG++ ++F+G H+  KPM ENT+NKALRV+GYDTK ++CGHGFR+MACSAL ES+LW+KD
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLDICRKAYVSPYM  412
            A+ERQMSH+ERN VR AY+HKAEHLEAR  MMQWWSDYLD+ R +YV+PY+
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYI  411

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  424 bits (1597),  Expect = 5e-120, Method: Compositional matrix adjust.
 Identities = 233/411 (57%), Positives = 334/411 (82%), Gaps = 2/411 (0%)

Query  3    LTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRINGKESRIALGAYPAVSLS  62
            LTD+KIR+ KP  K++K++D++GLYL V  +GS+ WY++YR++GKE+R+A+G+YP V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQREGVRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRK-WSQNTADRLL  121
            +AR++R++ RK+L   + P   R AE+++    + F+ +A AWH S  K WS++ AD++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQGLI  181
            + ++  +FP IG + ++E+  RH+ +L+K I++KG+ +VA+R RQHL++IMRHAV+QG I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  DTNPAANLGGVTTPPVRRHYPAlplerlpellerIEAYHQGRELTRLAVLLMLHVFIRSS  241
              NPA +L+GV TP V +H PALPL RLPELL++I++Y +GRELTRLA+ L LHVF+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGY-KGRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDI  301
            ELR+ARW E+++  R+WT+PA RE++  VR+S RGAKM+  H+VPLS Q++A+L QIK+I
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  TGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKD  361
            TG++ ++F+G H+  KPM ENT+NKALRV+GYDTK ++CGHGFR+MACSAL ES+LW+KD
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLDICRKAYVSPYM  412
            A+ERQMSH+ERN VR AY+HKAEHLEAR  MMQWWSDYLD+ R +YV+PY+
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYI  411

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  424 bits (1597),  Expect = 5e-120, Method: Compositional matrix adjust.
 Identities = 233/411 (57%), Positives = 334/411 (82%), Gaps = 2/411 (0%)

Query  3    LTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRINGKESRIALGAYPAVSLS  62
            LTD+KIR+ KP  K++K++D++GLYL V  +GS+ WY++YR++GKE+R+A+G+YP V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALAWHKSNRK-WSQNTADRLL  121
            +AR++R++ RK+L   + P   R AE+++    + F+ +A AWH S  K WS++ AD++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQGLI  181
            + ++  +FP IG + ++E+  RH+ +L+K I++KG+ +VA+R RQHL++IMRHAV+QG I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  DTNPAANLGGVTTPPVRRHYPAlplerlpellerIEAYHQGRELTRLAVLLMLHVFIRSS  241
              NPA +L+GV TP V +H PALPL RLPELL++I++Y +GRELTRLA+ L LHVF+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGY-KGRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDI  301
            ELR+ARW E+++  R+WT+PA RE++  VR+S RGAKM+  H+VPLS Q++A+L QIK+I
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  TGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKD  361
            TG++ ++F+G H+  KPM ENT+NKALRV+GYDTK ++CGHGFR+MACSAL ES+LW+KD
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLDICRKAYVSPYM  412
            A+ERQMSH+ERN VR AY+HKAEHLEAR  MMQWWSDYLD+ R +YV+PY+
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYI  411

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  424 bits (1597),  Expect = 5e-120, Method: Compositional matrix adjust.
 Identities = 233/411 (57%), Positives = 334/411 (82%), Gaps = 2/411 (0%)

Query  3    LTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRINGKESRIALGAYPAVSLS  62
            LTD+KIR+ KP  K++K++D++GLYL V  +GS+ WY++YR++GKE+R+A+G+YP V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALAWHKSNRK-WSQNTADRLL  121
            +AR++R++ RK+L   + P   R AE+++    + F+ +A AWH S  K WS++ AD++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQGLI  181
            + ++  +FP IG + ++E+  RH+ +L+K I++KG+ +VA+R RQHL++IMRHAV+QG I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  DTNPAANLGGVTTPPVRRHYPAlplerlpellerIEAYHQGRELTRLAVLLMLHVFIRSS  241
              NPA +L+GV TP V +H PALPL RLPELL++I++Y +GRELTRLA+ L LHVF+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGY-KGRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDI  301
            ELR+ARW E+++  R+WT+PA RE++  VR+S RGAKM+  H+VPLS Q++A+L QIK+I
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  TGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKD  361
            TG++ ++F+G H+  KPM ENT+NKALRV+GYDTK ++CGHGFR+MACSAL ES+LW+KD
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLDICRKAYVSPYM  412
            A+ERQMSH+ERN VR AY+HKAEHLEAR  MMQWWSDYLD+ R +YV+PY+
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYI  411

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  424 bits (1597),  Expect = 5e-120, Method: Compositional matrix adjust.
 Identities = 233/414 (57%), Positives = 338/414 (82%), Gaps = 2/414 (0%)

Query  3    LNDTKIRNLKPSAKPFKVSDSHGLYLLVNPGGSRLWYLKYRIDRKESRLGLGAYPDVSLA  62
            L D+KIR  KP AK++K++D++GLYL V+ +GS+LWY++YR++ KE+RL++G+YP+V+LA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   YARQQRDSIRKLLAQNINPAQQRSAERTPSTPEKTFKHVALEWHNS-NRTWSENHATRLL  121
             AR++RD+ RKLL   + P+  R AE+++    +TF+ +A  WH+S  + WSE+HA ++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMNNHIFPIIGHLQVTELNTRHFIDLLKRIEKKGLLEVAARTRQHMCNIMRHAVHQELI  181
            + ++  +FP IG ++++E++TRH+ +L+K I+ KG+ +VA+R RQH+ +IMRHAV+Q  I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  ENNPAANLEGIIAPPVKRHYPAlplerlpelliriKDYQQGRELTRLAVSLTLHLFIRSS  241
              NPA +L+G+++P V +H PALPL RLPELL +I++Y+ GRELTRLA+ L LH+F+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYK-GRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFRNRIWTIPATREAIPGVLYSGRGAKMRTPHIVPLSRQSIAILKQIREI  301
            ELR+ARW E++++ RIWT+PA REA+  V +S RGAKM+  H+VPLS Q++A+L QI+EI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGHQVLVFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLWAQD  361
            +G+ V+VF+G H+  KPM ENT+NKALR++GYDTK E+CGHGFR+MACSAL ES+LW++D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDMCRKAYAPPYICGK  415
            A+ERQMSH+ERN+VRAAY+HKAE L+AR  MMQWWSDYLDM R +Y +PYI ++
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYAR  414

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  424 bits (1595),  Expect = 7e-120, Method: Compositional matrix adjust.
 Identities = 245/419 (59%), Positives = 344/419 (83%), Gaps = 2/419 (0%)

Query  3    LNDSKIRNLKPSAKPFKVSDSHGLYLLVNPGGSRLWYLKYRINRKESRLGLGAYPDVSLA  62
            L DSKIR  KP AK++K++D++GLYL V+ +GS+LWY++YR++ KE+RL++G+YP+V+LA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQRDGIRKLLVQNINPAQQRSAERSTSSPEETFKSVALSWHKS-NRAWSENHAARLL  121
            +AR++RD+ RKLLV  + P+  R AE+++     TF+ +A +WH S  + WSE+HA ++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMNNHIFPIIGHLPVTELKTRHFIDllkgiekkglleVAARTRQHMCNIMRHAVHQELI  181
            + ++  +FP IG + ++E+ TRH+ +L+K+I+ KG+ +VA+R RQH+ +IMRHAV+Q  I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  EHNPAANLDGIVAPPVKRHYpalplerlpellaSIEDYKQGRELTRLAVSLTLHLFIRSS  241
              NPA +LDG+V+P V +H PALPL RLPELL  I++YK GRELTRLA+ L LH+F+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYK-GRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFRNKIWTIPATREAIPGVRYSGRGAKMRTPHIVPLSRQSVAILKQIREI  301
            ELR+ARW E++++ +IWT+PA REA+  VR+S RGAKM+  H+VPLS Q+VA+L QI+EI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGHQELIFPGDHNRYKPMCENTVNKALRVMGYDTKDEICGHGFRAMACSALMESGLWAQD  361
            +G+  ++F+G H+  KPM ENT+NKALRV+GYDTK E+CGHGFR+MACSAL ES+LW++D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDTNREEYVAPYIYAQQHKTA  420
            A+ERQMSH+ERN+VRAAY+HKAE L+AR  MMQWWSDYLD +RE YVAPYIYA++HK+A
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  423 bits (1591),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 239/411 (59%), Positives = 331/411 (81%), Gaps = 2/411 (0%)

Query  3    LTDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSHLWYLKYRINGKESRIALGAYPAVSLS  62
            LTD+KIR+ KP  K++K++D++GLYL V  +GS LWY++YR++GKE+R+A+G+YP V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQREGIRKMLALNINPAQQRAAERGSRMPEKMFKTVALAWHSSNKK-WSQNTADRLL  121
            +AR++R++ RK+L   + P+  R AE+++    + F+ +A AWHSS  K WS++ AD++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASLNNHIFPVIGHLSVSELKPRHFIDLLKGIEVKGLLEVASRTRQHLSNIMRYAVHQGLI  181
            + L+  +FP IG + ++E+  RH+ +L+K+I+ KG+ +VA+R RQHL++IMR AV+QG I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  DSNPAANLDGVTTPPVRHHYPAlqlerlpellerIDGYHQGRELTRLAVLLTLHVFIRSS  241
              NPA +LDGV TP V +H PAL L RLPELL++I+GY +GRELTRLA+ L LHVF+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGY-KGRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFTNRVWTIPATREAIAGVRYSGRGAKMRTAHIVPLSEQAIAILKQIKEI  301
            ELR+ARW E+++  R+WT+PA REA+  VR+S RGAKM+  H+VPLS QA+A+L QIKEI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGVYELVFPGDHNPYKPMCENTVNKALRLMGYNTKQDICGHGFRTMACSALMESGLWSQD  361
            +G   +VF+G H+  KPM ENT+NKALR++GY+TK ++CGHGFRTMACSAL ES+LWS+D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNTVRLAYIHKAEHLEARKAMMQWWSDYLDVCRKTYVPPYI  412
            A+ERQMSH+ERN VR AY+HKAEHLEAR  MMQWWSDYLD+ R  YV+PYI
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYI  411

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  423 bits (1594),  Expect = 8e-120, Method: Compositional matrix adjust.
 Identities = 233/414 (57%), Positives = 333/414 (81%), Gaps = 2/414 (0%)

Query  3    LTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRINGKESRIALGAYPAVSLS  62
            LTD+KIR+ KP  K++K++D++GLYL V  +GS+ WY++YR++GKE+R+A+G+YP V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALAWHKSNRK-WSQNTADRLL  121
            +AR++R++ RK+L   + P   R AE+++    + F+ +A AWH S  K WS++ AD++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASLNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQGLI  181
            + L+  +FP IG + ++E+  RH+ +L+K I++KG+ +VA+R RQHL++IMRHAV+QG I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  DTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRLAVLLMLHVFIRSS  241
              NPA +L+GV TP V +H PALPL RLPELL++I +Y +GRELTRLA+ L LHVF+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGY-KGRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMSHIVPLSEQSIAILKQIKDI  301
            ELR+ARW E+++  R+WT+PA RE++  VR+S RGAKM+  H+VPLS Q++A+L QIK+I
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  TGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKD  361
            TG++ ++F+G H+  KPM ENT+NKALRV+GYDTK ++CGHGFR+MACSAL ES+LW+KD
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            A+ERQMSH+ERN VR AY+HKAEHLEAR  MMQWWSDYL+  RE+Y +PY  ++
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYAR  414

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  423 bits (1594),  Expect = 8e-120, Method: Compositional matrix adjust.
 Identities = 235/414 (57%), Positives = 319/414 (78%), Gaps = 1/414 (0%)

Query  3    LTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWQLKYRFGGKEKKLAFGAYPTVTLA  62
            LTD+ IR AKPL K+YKL+DAQGLYL +  +GSKLW ++YRF GKE++LAFG+YP VTLA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   NARKLREEARAVLSTGDDPGVKKQQEKQAKKSGNTFEEVARKWLAGNIR-WTEAHAAKAL  121
            +AR  R+ AR +L +G  P++ ++ EK A  +  TF+ +A  W ++ ++ W+E HA K L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  RSLELHVFPLIGKIPVTDLKTADLLIPLRVAERKGNLETAARIQQRTTAIMRYAVQESLI  181
              L   VFP IG + ++++ T +L   ++  + KG  + A+R++Q+ T IMR AVQ++ I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  ASNPANDLTGAIAPPPKNHYPALPLEKMPELLERLEGYSGRLLTRLAVQLNLLIFIRSSE  241
              NPA DL G ++P   +H PALPL ++PELL++++GY GR LTRLA++LNL +F+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRFARWAEIDLDGAMWTIPAGREPIPGVRYSERGAKMKTPHLVPLSKQAVTVLKQLKLLS  301
            LR+ARW E++L + +WT+PA RE++  VR+SERGAKMK  HLVPLS QAV++L Q+K ++
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GNSELLFPGDHDPRKPMSENTINKALRVMGYDTKVDVCGHGFRTMACSALIESGRWSKDA  361
            G+S ++F+G H   KPMSENTINKALRV+GYDTK +VCGHGFRTMACSAL ES+ WSKDA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNNVRAAYIHKAEHLDERTQMMQWWSDYLDACRQKFVAPYRYDRQ  415
            +ERQMSH+ERN VRAAY+HKAEHL+ R +MMQWWSDYLD  R+ +VAPY Y R+
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARR  415

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  422 bits (1589),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 242/419 (58%), Positives = 345/419 (83%), Gaps = 2/419 (0%)

Query  3    LNDSKIRKLKPSAKSFKVSDSHGLYLLVNSSGSRLWYLKYRINRKESRLGLGAYPDVSLA  62
            L DSKIR  KP AKS+K++D++GLYL V++SGS+LWY++YR++ KE+RL++G+YP+V+LA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQRDGIRKLLAQNINPAQQRSAERTTSSPEKTFKHVALEWHKS-NRSWSENHAARLL  121
            +AR++RD+ RKLL   + P+  R AE+++    +TF+ +A  WH S  + WSE+HA ++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMNNHIFPIIGHLPVTELKTRHFIDllkgiekkglleVTARTRQHMCNIMRHAVHQELI  181
            + ++  +FP IG + ++E+ TRH+ +L+K+I+ KG+ +V++R RQH+ +IMRHAV+Q  I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  ENNPAANLDGIIAPPVKRHYpalplerlpellaSIEDYKQGRELTRLAVSLTLHLFIRSS  241
              NPA +LDG+++P V +H PALPL RLPELL  I++YK GRELTRLA+ L LH+F+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYK-GRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEINFRNKIWTIPATRESIPGVRYSGRGAKMRTPHIVPLSRQSIAILKQIRDI  301
            ELR+ARW E+N++ +IWT+PA RE++  VR+S RGAKM+  H+VPLS Q++A+L QI++I
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGHQELIFPGDHNPYKPMCENTVNKALRLMGYDTKDEVCGHGFRTMACSALMESGVWPQD  361
            +G+  ++F+G H+  KPM ENT+NKALR++GYDTK EVCGHGFRTMACSAL ES++W++D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDTNREGYIAPYIYAQQHKTA  420
            A+ERQMSH+ERN+VRAAY+HKAE L+AR  MMQWWSDYLD +REGY+APYIYA++HK+A
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  420 bits (1581),  Expect = 9e-119, Method: Compositional matrix adjust.
 Identities = 245/419 (59%), Positives = 339/419 (81%), Gaps = 2/419 (0%)

Query  3    LNDSKIRKLKPSSRPVKLSDAHGLYLLVNPGGSRIWYLKYRFNGKESRVSLGAYPLVSLA  62
            L DSKIR  KP +++ KL+DA+GLYL V+ +GS++WY++YRF+GKE+R+++G+YP V+LA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARQQRDGIRKLLAQNINPAQQRMAEKSACSPEKCFKAVALAWHKT-NKKWSADYAARIL  121
            EAR++RD+ RKLL   + P+  R AEK+A    + F+ +A AWH +  K WS D A +IL
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMENHIFPAVGHLPVAALKTQDFTALLRVIENKGFLEVASRTRQQLSNIMRYAVQQGLT  181
            + +   +FP +G + +A + T++++ L++ I++KG  +VA+R RQ+L++IMR AVQQG  
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  DSNPAQHLEGVTASPVKNHYPAlplerlpelldrIGDYRQGRELTRLAVVLTLHLFIRSS  241
              NPA +L+GV ++ V +H PALPL RLPELLD+I +Y+ GRELTRLA+ L LH+F+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYK-GRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFRHKIWTIPATREAIDKVRFSGRGAKIRTPHIVPLSCQAIAILKQIQEL  301
            ELR+ARW E++++ +IWT+PA REA+ +VRFS RGAK++  H+VPLS QA+A+L QI+E+
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGHLDLVFPGDHNPYKPMSENTTNRALRLMGYDTKTEICGHGLRAMACSALVESDLWSRD  361
            +G+  +VF+G H+  KPMSENT N+ALR++GYDTKTE+CGHG+R+MACSAL ES LWS+D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  TVERQMSHQERNSVRAAYVHKAEHLEARKAMMQWWSDYLDVCREGYVAPYIYARQHEAA  420
            ++ERQMSH+ERN+VRAAYVHKAEHLEAR  MMQWWSDYLD+ REGYVAPYIYAR+H AA
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  417 bits (1571),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 240/419 (58%), Positives = 344/419 (83%), Gaps = 2/419 (0%)

Query  3    LNDSKIRNLKPSAKPYKVSDSHGLYLLVNPGGSRLWYLKYRINRKESRLGLGAYPDVSLA  62
            L DSKIR  KP AK+YK++D++GLYL V+ +GS+LWY++YR++ KE+RL++G+YP+V+LA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQRDGIRKLLAQNINPAQQRAAEKAPRSPEKSFRDVALDWHKSN-RTWSESHATRLL  121
            +AR++RD+ RKLL   + P+  R AEKA+    ++F+ +A  WH S  + WSE HA ++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  ASMNNHLFPVIGHLPVTELKARHFIDllkgiekkglleVAARTRQHLCNIMRYAVHQELI  181
            + ++  +FP IG + ++E+ +RH+ +L+K+I+ KG+ +VA+R RQHL +IMR AV+Q  I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  EHNPAANLDGIIAPPVKRHYpalpleklpellaRIEDYKQGRELTRMAVSLTLHLFIRSS  241
              NPA +LDG+++P V +H PALPL +LPELL +I++YK GRELTR+A+ L LH+F+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYK-GRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFRNHIWTIPATREAIPGVRYSGRGAKMRTPHIVPLSRQSITILKQIREI  301
            ELR+ARW E++++ +IWT+PA REA+  VR+S RGAKM+  H+VPLS Q++++L QI+EI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGHQELIFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLWSQD  361
            +G+  ++F+G H+  KPM ENT+NKALR++GYDTK E+CGHGFR+MACSAL ES+LWS+D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNSVRAAYIHKAEYLDARQAMMQWWSDYLDMNRESYVAPYVYAQQHKTA  420
            A+ERQMSH+ERN+VRAAY+HKAE L+AR  MMQWWSDYLDM+RE+YVAPY+YA++HK+A
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA  419

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  417 bits (1571),  Expect = 6e-118, Method: Compositional matrix adjust.
 Identities = 216/414 (53%), Positives = 321/414 (78%), Gaps = 2/414 (0%)

Query  3    LTDTKVRSAKPEEKEYSLVDGDGMFLLVHPNGSKYWRFRFRFGGKQHLMAFGVYPEVSLA  62
            LTD+K+R+AKP  K Y L D++G++L V  +GSK W FR+RF GK++ +AFG YP+V+LA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQKREAARKLVAAGIDPREQKRAVQEEQAKAVFTFEFVAREWHATNKK-WSEEHSRRV  121
            +AR+KR+AARKL+ +G+ P   ++A +     +  TF+++A  WH++  K WSE+H+ ++
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKA-EKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI  120

Query  122  LKSLEDNLFSAIGKRNVAELKTRDLLAPIKTVEQSGRLEVASRLQQRTTAIMRYAVQSGL  181
            L  L   +F+ IG  ++AE+ TR+L   +K++++ G  +VA+R++Q+ T IMR AVQ G 
Sbjct  121  LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT  180

Query  182  IDYNPAQEMAGAVASSNRQHRPALELKRTPELLQRIDSYTGRPLTRLSVELTLLIFIRSS  241
            I YNPA ++ G V++   QH+PAL LKR PELL++I++Y GR LTRL++EL L +F+RSS
Sbjct  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWSEIDFETSMWTIPPEREPIEGVKHSHRGSKMRTPHLVPLSRQALVILKQIQQV  301
            ELR+ARW E+++ + +WT+P+ RE++  V+ S+RG+KM+  HLVPLS QA+ +L QI+++
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGDHELIFIGDHNPRKPMSENTVNNALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRD  361
            +G+  ++F G H+  KPMSENT+N+ALRV+GYDTK EVCGHGFRTMACS+L ES+LWS+D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHMERNSVRAAYIHKAEHLDERRLMLQWWADFLDANREKGVSPFDFGK  415
            A+ERQMSH ERN+VRAAY+HKAEHL+ R  M+QWW+D+LD +RE  V+P+ +++
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYAR  414

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  417 bits (1569),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 222/413 (54%), Positives = 320/413 (78%), Gaps = 1/413 (0%)

Query  3    LTDIKVRTAKPMDKQYKLTDGNGMHLLVHPNGSKYWRLQYRFDGKQKMLALGVYPDVSLA  62
            LTD K+R+AKP+ K YKLTD++G+ L V  +GSK W ++YRF+GK++ LA+G YP+V+LA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARTRREEARKLVANGIDPGDKKKNDKVEQEDARTFEQLAIEWHATNKK-WSEEHSRRVL  121
            +AR +R+ ARKL+ +G+ P+  +K +K   +++RTF+ +A  WH++  K WSE+H+ ++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLEDNLFPAIGKRNITELKTRDLLAPIKVVELSGRLEVASRLQQRTTAIMRYAVQSGLL  181
              L   +FP IG  +I+E+ TR+L   +K ++  G  +VA+R++Q+ T IMR AVQ G +
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  DYNPAQEMVGAVASSNRQHRPALELKRTPELLQRIGSYTGRPLTRLAVELTLLVFIRSSE  241
             YNPA ++ G V++   QH+PAL LKR PELL++I +Y GR LTRLA+EL L VF+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRFARWSEIDFETSMWTIPAEREAIEGVKHSQRGSKMRTPHLVPLSRQALEILEQIKTFS  301
            LR+ARW E+++ + +WT+PA REA+  V+ S+RG+KM+  HLVPLS QA+ +LEQIK ++
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GDHELIFIGDHNPRKPMSENTVNKSLRVMGYDTQVEVCGHGFRTMACSSLIESGLWSRDA  361
            G+  ++F G H+  KPMSENT+NK+LRV+GYDT+ EVCGHGFRTMACS+L ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERLMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANREKAVSPFDFAK  414
            +ER MSH ERN+VRAAY+HKAEHL+ R  M+QWW+D+LD +RE  V+P+ +A+
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYAR  414

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  416 bits (1566),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 233/410 (57%), Positives = 332/410 (81%), Gaps = 2/410 (0%)

Query  3    LTDAKIRTLKPSDKPFKVSDSHGLYILVKPGGSRHWYLKYRINGKESRLGLGAYPNVSLT  62
            LTD+KIR+ KP  K++K++D++GLY+ V  +GS+ WY++YR++GKE+RL++G+YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARQQRDDIRKLLAQKINPAQQRLTEKAARSPEKAFKAVALNWHKSN-KTWSEDHANRVL  121
            +AR++RD  RKLL   + P+  R +EKAA    ++F+ +A  WH S  K WSEDHA+++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  GRMNNHIFPIIGHLTVTELKVQHFINLLKGVENKGLLEIASRTRQYISSIMRHALHQGLI  181
              ++  +FP IG + ++E+  +H+ +L+K++++KG+ ++A+R RQ ++ IMRHA++QG I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  EHNPAADLKGVTVPPIKRHYPAlplerlpellkrIDDYKQGRELTQLAIMLSLHVFIRSS  241
              NPA DL GV  P + +H PALPL RLPELL +I++YK GRELT+LA+ L+LHVF+RSS
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYK-GRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWPEINFRNRLWTIPATRETIPNVRNSGRGAKMRAQHIVPLSQQAIDILKQIREI  301
            ELR+ARW E+N++ R+WT+PA RE++ NVR S RGAKM+ +H+VPLS QA+ +L QI+EI
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGDQVLIFPSIRDPYKPMSENTINKALRLMDYDTKEDVCGHGFRAMACSALIESGLWSED  361
            +G+ V++F++ +   KPMSENTINKALR+++YDTK +VCGHGFR+MACSAL ES+LWS D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AIERQMSHQERNSVRAAYIHKAEHLEARKAMMQWWSDYIDECREKYVPPY  411
            AIERQMSH+ERN+VRAAY+HKAEHLEAR  MMQWWSDY+D  RE YV+PY
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPY  410

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  416 bits (1566),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 229/417 (55%), Positives = 322/417 (78%), Gaps = 1/417 (0%)

Query  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121
            EAR KRD ARKL+  G+ P   ++  K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  RYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I+GYKG+ +TRLA+ LNL VF+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTWA  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS QAVA+L +++  +
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  EVCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNP  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  416 bits (1566),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 229/417 (55%), Positives = 322/417 (78%), Gaps = 1/417 (0%)

Query  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121
            EAR KRD ARKL+  G+ P   ++  K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  RYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I+GYKG+ +TRLA+ LNL VF+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTWA  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS QAVA+L +++  +
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  EVCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNP  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  416 bits (1566),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 229/417 (55%), Positives = 322/417 (78%), Gaps = 1/417 (0%)

Query  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121
            EAR KRD ARKL+  G+ P   ++  K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  RYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I+GYKG+ +TRLA+ LNL VF+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTWA  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS QAVA+L +++  +
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  EVCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNP  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  416 bits (1566),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 229/417 (55%), Positives = 322/417 (78%), Gaps = 1/417 (0%)

Query  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121
            EAR KRD ARKL+  G+ P   ++  K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  RYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I+GYKG+ +TRLA+ LNL VF+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTWA  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS QAVA+L +++  +
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  EVCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNP  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  416 bits (1566),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 229/417 (55%), Positives = 322/417 (78%), Gaps = 1/417 (0%)

Query  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121
            EAR KRD ARKL+  G+ P   ++  K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  RYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I+GYKG+ +TRLA+ LNL VF+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTWA  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS QAVA+L +++  +
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  EVCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNP  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  416 bits (1566),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 229/417 (55%), Positives = 322/417 (78%), Gaps = 1/417 (0%)

Query  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121
            EAR KRD ARKL+  G+ P   ++  K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  RYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I+GYKG+ +TRLA+ LNL VF+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTWA  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS QAVA+L +++  +
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  EVCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNP  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 228/417 (55%), Positives = 322/417 (78%), Gaps = 1/417 (0%)

Query  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLIHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62
            LTD+KIRAAKP  K+YKLTD+ G++L +  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121
            EAR KRD ARKL+  G+ P   ++  K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  RYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I+GYKG+ +TRLA+ LNL VF+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTWA  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS QAVA+L +++  +
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  EVCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNP  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  415 bits (1562),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 228/417 (55%), Positives = 322/417 (78%), Gaps = 1/417 (0%)

Query  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121
            EAR KRD ARKL+  G+ P   ++  K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  RYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I+GYKG+ +TRLA+ LNL VF+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTWA  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS QAVA+L +++  +
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTRDVCGHGFRAMACSALIESGLWSRDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  +VCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  415 bits (1563),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 229/417 (55%), Positives = 323/417 (78%), Gaps = 1/417 (0%)

Query  3    LTDIKVRAAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLA  62
            LTD K+RAAKP  K YKLTD+ G+ L V  +GSK W ++YR+EGK++ LA+G YP++TLA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARVRRDEARNLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKK-WSEDHAHRVL  121
            +AR +RD AR+LL +GV P+  +K +K     +RTF+ +A  WH++  K WSEDHA+++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLI  181
              L   +F+ +G  +IAE+ TR+L   +K+++  G  +VA+R++Q+ T IMR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  DYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSE  241
             YNPA ++ G V++   QH+PAL LKR+PELL KI++Y GR LTR A+EL L +F+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFY  301
            LR+ARW E+++ A IWT+P+ RE++  V+ S+RG+KM+  HLVPLS+QA+A+L QIK++ 
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDA  361
            G   ++F G H  +KPMSENT+N ALRV+GYDTK EVCGHGFRTMACS+L ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNP  418
            +ERQMSH ERN+VRAAY+HKAEHLE R  M+QWW+D+LD++RE +++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  415 bits (1563),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 229/417 (55%), Positives = 323/417 (78%), Gaps = 1/417 (0%)

Query  3    LTDIKVRAAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLA  62
            LTD K+RAAKP  K YKLTD+ G+ L V  +GSK W ++YR+EGK++ LA+G YP++TLA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARVRRDEARNLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKK-WSEDHAHRVL  121
            +AR +RD AR+LL +GV P+  +K +K     +RTF+ +A  WH++  K WSEDHA+++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLI  181
              L   +F+ +G  +IAE+ TR+L   +K+++  G  +VA+R++Q+ T IMR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  DYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSE  241
             YNPA ++ G V++   QH+PAL LKR+PELL KI++Y GR LTR A+EL L +F+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFY  301
            LR+ARW E+++ A IWT+P+ RE++  V+ S+RG+KM+  HLVPLS+QA+A+L QIK++ 
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDA  361
            G   ++F G H  +KPMSENT+N ALRV+GYDTK EVCGHGFRTMACS+L ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNP  418
            +ERQMSH ERN+VRAAY+HKAEHLE R  M+QWW+D+LD++RE +++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  415 bits (1562),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 230/417 (56%), Positives = 322/417 (78%), Gaps = 1/417 (0%)

Query  3    LTDIKVRAAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLA  62
            LTD K+RAAKP  K YKLTD+ G+ L V  +GSK W ++YR+EGK++ LA+G YP++TLA
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   DARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKK-WSEDHAHRVL  121
            +AR +RD ARKLL +GV P+  +K +K     +RTF+ +A  WH++  K WSEDHA+++L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLI  181
              L   +F+ +G  +IAE+ TR+L   +K+++  G  +VA+R++Q+ T IMR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  DYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELSLLIFIRSSE  241
             YNPA ++ G V++   QH+PAL LKR+PELL KI++Y GR LTR A EL+L +F+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFC  301
            LR+ARW E+++ A IWT+P+ RE++  V+ S+RG+KM+  HLVPLS+QA+A+L QIK++ 
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDA  361
            G   ++F G H  +KPMSENT+N ALRV+GYDTK EVCGHGFRTMACS+L ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNP  418
            +ERQMSH ERN+VRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  415 bits (1561),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 228/417 (55%), Positives = 322/417 (78%), Gaps = 1/417 (0%)

Query  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121
            EAR KRD ARKL+  G+ P   ++  K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  RYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I+GYKG+ +TRLA+ LNL VF+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSRMRTPHLVPLSKQAVAILTELQTWA  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG++M+  HLVPLS QAVA+L +++  +
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  EVCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  412 bits (1551),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 230/412 (56%), Positives = 318/412 (78%), Gaps = 1/412 (0%)

Query  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121
            EAR KRD ARKL+  GV P   ++A K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  RYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I+GYKG+ +TRLA+ LNL VF+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTWA  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS QAVA+L +++  +
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  +VCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYA  413
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE  ++P+ YA
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYA  413

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  412 bits (1551),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 321/417 (77%), Gaps = 1/417 (0%)

Query  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARTKRDEARKLISEGIDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121
            EAR KRD ARKL+  G+ P   ++A K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181
              L   VFP IG  DI+ + T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  RYNPALDMAGALTTIKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSSE  241
            +YNPA D+ G +T +  QH+PAL L RLPELL +I+GYKG+ +TRLA+ LNL VF+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILAELQTWA  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS QAVA+L +++  +
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  +VCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLNANREKCISPFDYAKINNP  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+L+ +RE  ++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  412 bits (1551),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 321/417 (77%), Gaps = 1/417 (0%)

Query  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121
            EAR KRD ARKL+  GV P   ++A K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I +YKG+ +T+LA+ LNL VF+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWA  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS Q VA+L +++  +
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  +VCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  412 bits (1551),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 321/417 (77%), Gaps = 1/417 (0%)

Query  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121
            EAR KRD ARKL+  GV P   ++A K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I +YKG+ +T+LA+ LNL VF+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWA  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS Q VA+L +++  +
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  +VCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  412 bits (1551),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 321/417 (77%), Gaps = 1/417 (0%)

Query  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121
            EAR KRD ARKL+  GV P   ++A K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I +YKG+ +T+LA+ LNL VF+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWA  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS Q VA+L +++  +
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  +VCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  412 bits (1551),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 321/417 (77%), Gaps = 1/417 (0%)

Query  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121
            EAR KRD ARKL+  GV P   ++A K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I +YKG+ +T+LA+ LNL VF+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWA  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS Q VA+L +++  +
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  +VCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  412 bits (1551),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 321/417 (77%), Gaps = 1/417 (0%)

Query  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121
            EAR KRD ARKL+  GV P   ++A K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121

Query  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181

Query  182  RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I +YKG+ +T+LA+ LNL VF+RSSE
Sbjct  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241

Query  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWA  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS Q VA+L +++  +
Sbjct  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301

Query  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  +VCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361

Query  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418

> NC_004631_P3|143|G135|29144621|NP_807963.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|-|130255..131514|int|t4371|bacteriophage 
integrase
Length=419

 Score =  412 bits (1549),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 227/414 (55%), Positives = 325/414 (79%), Gaps = 2/414 (0%)

Query  3    LTDIKVRSAKPEEKPYKLTDGNGMFLLVHTNGSKYWRLRYRSDGKEKTLALGVYPEVSLS  62
            LTD K+R+AKP  K+YKLTD++G++L V T+GSK W +RYR +GKE+ LA+G YP+V+L+
Sbjct  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA  61

Query  63   EARQKRDEARKLISAGVDPNEHKKAVKTQQQDDEQTFEAVARAWHTDNKK-WSESHAERI  121
            EAR+KRD ARKL+ +GV P+  +KA K+   D+ +TF+ +A AWH+   K WSE HA++I
Sbjct  62   EAREKRDAARKLLVSGVCPSLPRKAEKAAV-DGTRTFQYIATAWHSSCLKLWSEDHADKI  120

Query  122  LKSLSDNIFPAIGGTHVANLKTRDLLTPIKSVERSGRLEVAKRLKQRVTAIMTYAVQNGL  181
            L  L   +FP IG+ ++A++ TR+L   +KS++  G  +VA R++Q++T IM  AVQ+G 
Sbjct  121  LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT  180

Query  182  IDYNPAQDMAGAIMPGKVEHRPALELDRLPELLGRIDGYKGREFTKWVINLSLLIFIRSS  241
            I YNPA D+ G + P   +H+PAL L RLPELL++I+GYKGRE+T+  ++L+L +F+RSS
Sbjct  181  IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS  240

Query  242  ELRFARWPEIDFERSLWTIPPEREPIPGVKFSERGSKMHTPHLVPLSRQALEILKKIREV  301
            ELR+ARW E+++   +WT+P+ RE++  V+FSERG+KM   HLVPLS QA+ +L +I+E+
Sbjct  241  ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI  300

Query  302  SGHCELVFIGDHSSRKPVSEGTVNKALQTMGYDTKTEVCGHGFRTMACSSLIESGLWSRD  361
            +G+  +VF G HS  KP+SE T+NKAL+ +GYDTKTEVCGHGFRTMACS+L ES+LWS+D
Sbjct  301  TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD  360

Query  362  AVERQMSHQERNGVRAAYIHKAEHLDERRLMLQWWADFLDANRERAISAFDFAK  415
            A+ERQMSH+ERNGVRAAY+HKAEHL+ R  M+QWW+D+LD +RE  ++++ +A+
Sbjct  361  AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYAR  414