Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of tcpF gene of X64098

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

• Sequence Alignments

1) tcpF in NC_012582


> X64098|13|G13|48417|CAA45464.1|Vibrio_cholerae_ssp._classical_01,_Z17561|+|11556..12572|tcpF|-|-
Length=338

 Score =  540 bits (2037),  Expect = 4e-155, Method: Compositional matrix adjust.
 Identities = 335/338 (99%), Positives = 338/338 (100%), Gaps = 0/338 (0%)

Query  1    MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMS  60
            MRYKKTLMLSIMITSFNSFA+N+NYSSTSTVYATSNEAT+SRGSEHLRYPYLECIKIGMS
Sbjct  1    MRYKKTLMLSIMITSFNSFAINENYSSTSTVYATSNEATESRGSEHLRYPYLECIKIGMS  60

Query  61   RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL  120
            RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL
Sbjct  61   RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL  120

Query  121  AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT  180
            AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT
Sbjct  121  AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT  180

Query  181  PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSK  240
            PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSK
Sbjct  181  PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSK  240

Query  241  HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGY  300
            HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGY
Sbjct  241  HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGY  300

Query  301  KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK  338
            KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK
Sbjct  301  KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK  338

2) tcpF in NC_009457


> X64098|13|G13|48417|CAA45464.1|Vibrio_cholerae_ssp._classical_01,_Z17561|+|11556..12572|tcpF|-|-
Length=338

 Score =  540 bits (2037),  Expect = 4e-155, Method: Compositional matrix adjust.
 Identities = 335/338 (99%), Positives = 338/338 (100%), Gaps = 0/338 (0%)

Query  1    MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMS  60
            MRYKKTLMLSIMITSFNSFA+N+NYSSTSTVYATSNEAT+SRGSEHLRYPYLECIKIGMS
Sbjct  1    MRYKKTLMLSIMITSFNSFAINENYSSTSTVYATSNEATESRGSEHLRYPYLECIKIGMS  60

Query  61   RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL  120
            RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL
Sbjct  61   RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL  120

Query  121  AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT  180
            AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT
Sbjct  121  AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT  180

Query  181  PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSK  240
            PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSK
Sbjct  181  PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSK  240

Query  241  HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGY  300
            HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGY
Sbjct  241  HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGY  300

Query  301  KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK  338
            KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK
Sbjct  301  KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK  338

3) tcpF in NC_012578


> X64098|13|G13|48417|CAA45464.1|Vibrio_cholerae_ssp._classical_01,_Z17561|+|11556..12572|tcpF|-|-
Length=338

 Score =  539 bits (2035),  Expect = 6e-155, Method: Compositional matrix adjust.
 Identities = 333/338 (99%), Positives = 338/338 (100%), Gaps = 0/338 (0%)

Query  1    MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMS  60
            MRYKKTLMLSIMITSFNSFA+N+NYSSTSTVYATSNEAT+SRGSEHLRYPYLECIKIGMS
Sbjct  1    MRYKKTLMLSIMITSFNSFAINENYSSTSTVYATSNEATESRGSEHLRYPYLECIKIGMS  60

Query  61   RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL  120
            RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL
Sbjct  61   RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL  120

Query  121  AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT  180
            AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT
Sbjct  121  AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT  180

Query  181  PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVSELSK  240
            PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDV+ELSK
Sbjct  181  PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSK  240

Query  241  HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSDNLTGKKLYNVSTNDMHNGY  300
            HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPS+NLTGKKLYNVSTNDMHNGY
Sbjct  241  HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGY  300

Query  301  KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK  338
            KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK
Sbjct  301  KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK  338

4) VCD_003491 in NC_012668


> X64098|13|G13|48417|CAA45464.1|Vibrio_cholerae_ssp._classical_01,_Z17561|+|11556..12572|tcpF|-|-
Length=338

 Score =  539 bits (2034),  Expect = 8e-155, Method: Compositional matrix adjust.
 Identities = 333/338 (99%), Positives = 337/338 (99%), Gaps = 0/338 (0%)

Query  1    MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMS  60
            MRYKKTLMLSIMITSFNSFA+N+NYSSTSTVYATSNEAT+SRGSEHLRYPYLECIKIGMS
Sbjct  1    MRYKKTLMLSIMITSFNSFAINENYSSTSTVYATSNEATESRGSEHLRYPYLECIKIGMS  60

Query  61   RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL  120
            RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL
Sbjct  61   RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL  120

Query  121  AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT  180
            AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT
Sbjct  121  AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT  180

Query  181  PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVSELSK  240
            PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDV+ELSK
Sbjct  181  PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSK  240

Query  241  HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSGNLTGKKLYNVSTNDMHNGY  300
            HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPS NLTGKKLYNVSTNDMHNGY
Sbjct  241  HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGY  300

Query  301  KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK  338
            KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK
Sbjct  301  KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK  338

5) Vch1786_I0343 in NC_016445


> X64098|13|G13|48417|CAA45464.1|Vibrio_cholerae_ssp._classical_01,_Z17561|+|11556..12572|tcpF|-|-
Length=338

 Score =  539 bits (2034),  Expect = 8e-155, Method: Compositional matrix adjust.
 Identities = 333/338 (99%), Positives = 337/338 (99%), Gaps = 0/338 (0%)

Query  1    MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMS  60
            MRYKKTLMLSIMITSFNSFA+N+NYSSTSTVYATSNEAT+SRGSEHLRYPYLECIKIGMS
Sbjct  1    MRYKKTLMLSIMITSFNSFAINENYSSTSTVYATSNEATESRGSEHLRYPYLECIKIGMS  60

Query  61   RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL  120
            RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL
Sbjct  61   RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL  120

Query  121  AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT  180
            AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT
Sbjct  121  AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT  180

Query  181  PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVSELSK  240
            PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDV+ELSK
Sbjct  181  PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSK  240

Query  241  HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSGNLTGKKLYNVSTNDMHNGY  300
            HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPS NLTGKKLYNVSTNDMHNGY
Sbjct  241  HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGY  300

Query  301  KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK  338
            KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK
Sbjct  301  KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK  338

6) VC0837 in NC_002505


> X64098|13|G13|48417|CAA45464.1|Vibrio_cholerae_ssp._classical_01,_Z17561|+|11556..12572|tcpF|-|-
Length=338

 Score =  539 bits (2034),  Expect = 8e-155, Method: Compositional matrix adjust.
 Identities = 333/338 (99%), Positives = 337/338 (99%), Gaps = 0/338 (0%)

Query  1    MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMS  60
            MRYKKTLMLSIMITSFNSFA+N+NYSSTSTVYATSNEAT+SRGSEHLRYPYLECIKIGMS
Sbjct  1    MRYKKTLMLSIMITSFNSFAINENYSSTSTVYATSNEATESRGSEHLRYPYLECIKIGMS  60

Query  61   RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL  120
            RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL
Sbjct  61   RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL  120

Query  121  AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT  180
            AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT
Sbjct  121  AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT  180

Query  181  PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVSELSK  240
            PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDV+ELSK
Sbjct  181  PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSK  240

Query  241  HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSGNLTGKKLYNVSTNDMHNGY  300
            HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPS NLTGKKLYNVSTNDMHNGY
Sbjct  241  HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGY  300

Query  301  KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK  338
            KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK
Sbjct  301  KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK  338

7) O3Y_03895 in NC_016944


> X64098|13|G13|48417|CAA45464.1|Vibrio_cholerae_ssp._classical_01,_Z17561|+|11556..12572|tcpF|-|-
Length=338

 Score =  537 bits (2027),  Expect = 2e-154, Method: Compositional matrix adjust.
 Identities = 332/338 (99%), Positives = 337/338 (99%), Gaps = 0/338 (0%)

Query  1    MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMS  60
            MRYKKTLMLSIMITSFNSFA+N+NYSSTSTVYATSNEAT+SRGSEHLRYPYLECIKIGMS
Sbjct  1    MRYKKTLMLSIMITSFNSFAINENYSSTSTVYATSNEATESRGSEHLRYPYLECIKIGMS  60

Query  61   RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL  120
            RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL
Sbjct  61   RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL  120

Query  121  AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT  180
            AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT
Sbjct  121  AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT  180

Query  181  PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVSELSK  240
            PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDV+ELSK
Sbjct  181  PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSK  240

Query  241  HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSGNLTGKKLYNVSTNDVHNGY  300
            HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPS NLTGKKLYNVSTND+HNGY
Sbjct  241  HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGY  300

Query  301  KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK  338
            KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK
Sbjct  301  KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK  338