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PAthogenisity Island DataBase (PAI DB)

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Homologs of cagQ gene of NC_017365_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) cagQ
( YP_005774535.1 )

cag island protein

NC_017365
(Helicobacter pylori F30)

1e-12

100

2) cagQ
( YP_007536668.1 )

cag island protein

NC_020508
(Helicobacter pylori OK113)

1e-12

100

• Sequence Alignments

1) cagQ in NC_017365


> NC_017365_P1|13|G13|384899155|YP_005774535.1|Helicobacter_pylori_F30|-|16523..16651|cagQ|HPF30_0790|cag 
island protein
Length=42

 Score = 66.6 bits (233),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 42/42 (100%), Positives = 42/42 (100%), Gaps = 0/42 (0%)

Query  1   MEVLKNGFGSMKNMGSALIGNGFSSSKSDKTANKMSVPQVKL  42
           MEVLKNGFGSMKNMGSALIGNGFSSSKSDKTANKMSVPQVKL
Sbjct  1   MEVLKNGFGSMKNMGSALIGNGFSSSKSDKTANKMSVPQVKL  42

2) cagQ in NC_020508


> NC_017365_P1|13|G13|384899155|YP_005774535.1|Helicobacter_pylori_F30|-|16523..16651|cagQ|HPF30_0790|cag 
island protein
Length=42

 Score = 66.3 bits (232),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 42/42 (100%), Positives = 42/42 (100%), Gaps = 0/42 (0%)

Query  9   MEVLKNGFGSMKNMGSALIGNGFSSSKSDKTANKMSVPQVKL  50
           MEVLKNGFGSMKNMGSALIGNGFSSSKSDKTANKMSVPQVKL
Sbjct  1   MEVLKNGFGSMKNMGSALIGNGFSSSKSDKTANKMSVPQVKL  42