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Homologs of ler gene of AF453442

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ler
( YP_003236108.1 )

transcriptional regulator Ler

NC_013364
(Escherichia coli 11128)

9e-56

2) ler
( YP_002331430.1 )

transcriptional regulator Ler

NC_011601
(Escherichia coli E2348/69)

9e-56

3) G2583_4443
( YP_003501894.1 )

hypothetical protein

NC_013941
(Escherichia coli CB9615)

2e-55

4) Z5140
( NP_290288.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

2e-55

5) ECO55CA74_21315
( YP_006161368.1 )

hypothetical protein

NC_017656
(Escherichia coli RM12579)

2e-55

6) ECs4588
( NP_312615.1 )

hypothetical protein

NC_002695
(Escherichia coli Sakai)

2e-55

7) CDCO157_4323
( YP_006315188.1 )

hypothetical protein

NC_017906
(Escherichia coli Xuzhou21)

2e-55

8) ler
( YP_003366522.1 )

Ler transcriptional regulator

NC_013716
(Citrobacter rodentium ICC168)

4e-52

9) ECH74115_5080
( YP_002273184.1 )

hypothetical protein

NC_011353
(Escherichia coli EC4115)

6e-52

10) ler
( YP_003080500.1 )

enterocyte effacement (LEE)-encoded regulator

NC_013008
(Escherichia coli TW14359)

6e-52

11) ler
( YP_003232133.1 )

transcriptional regulator Ler

NC_013361
(Escherichia coli 11368)

5e-49

100

12) ler
( YP_003223495.1 )

transcription regulator Ler

NC_013353
(Escherichia coli 12009)

5e-49

100

13) bgla_1p0180
( YP_004362452.1 )

histone family protein nucleoid-structuring protein H-NS

NC_015382
(Burkholderia gladioli BSR3)

4e-08

• Sequence Alignments

1) ler in NC_013364


> AF453442|13|G13|18034563|AAL57584.1|Escherichia_coli_REPEC_84/110-1|+|8458..8847|ler|-|Ler
Length=129

 Score =  209 bits (776),  Expect = 9e-56, Method: Compositional matrix adjust.
 Identities = 126/129 (98%), Positives = 128/129 (99%), Gaps = 0/129 (0%)

Query  1    MRRLFIMNMETNSHTTSPYIQLIEQIAVLQQEAKRLREQEVQSVIESIQKQITYYNITLQ  60
            MRRLFIMNMETNSHTTSPYIQLIEQI VLQQEAKRLREQE+QSVIESIQKQITYYNITLQ
Sbjct  1    MRRLFIMNMETNSHTTSPYIQLIEQIEVLQQEAKRLREQEIQSVIESIQKQITYYNITLQ  60

Query  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120
            ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE
Sbjct  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120

Query  121  EEIIPLKNI  129
            +EIIPLKNI
Sbjct  121  DEIIPLKNI  129

2) ler in NC_011601


> AF453442|13|G13|18034563|AAL57584.1|Escherichia_coli_REPEC_84/110-1|+|8458..8847|ler|-|Ler
Length=129

 Score =  209 bits (776),  Expect = 9e-56, Method: Compositional matrix adjust.
 Identities = 126/129 (98%), Positives = 128/129 (99%), Gaps = 0/129 (0%)

Query  1    MRRLFIMNMETNSHTTSPYIQLIEQIAVLQQEAKRLREQEVQSVIESIQKQITYYNITLQ  60
            MRRLFIMNMETNSHTTSPYIQLIEQI VLQQEAKRLREQE+QSVIESIQKQITYYNITLQ
Sbjct  1    MRRLFIMNMETNSHTTSPYIQLIEQIEVLQQEAKRLREQEIQSVIESIQKQITYYNITLQ  60

Query  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120
            ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE
Sbjct  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120

Query  121  EEIIPLKNI  129
            +EIIPLKNI
Sbjct  121  DEIIPLKNI  129

3) Z5140 in NC_002655


> AF453442|13|G13|18034563|AAL57584.1|Escherichia_coli_REPEC_84/110-1|+|8458..8847|ler|-|Ler
Length=129

 Score =  208 bits (774),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 125/129 (97%), Positives = 127/129 (99%), Gaps = 0/129 (0%)

Query  1    MRRLFIMNMENNSHTTSPYIQLIEQIAVLQQEAKRLREQEVQSVIESIQKQITYYNITLQ  60
            MRRLFIMNME NSHTTSPYIQLIEQI VLQQEAKRLREQE+QSVIESIQKQITYYNITLQ
Sbjct  1    MRRLFIMNMETNSHTTSPYIQLIEQIEVLQQEAKRLREQEIQSVIESIQKQITYYNITLQ  60

Query  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120
            ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE
Sbjct  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120

Query  121  EEIIPLKNI  129
            +EIIPLKNI
Sbjct  121  DEIIPLKNI  129

4) ECs4588 in NC_002695


> AF453442|13|G13|18034563|AAL57584.1|Escherichia_coli_REPEC_84/110-1|+|8458..8847|ler|-|Ler
Length=129

 Score =  208 bits (774),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 125/129 (97%), Positives = 127/129 (99%), Gaps = 0/129 (0%)

Query  1    MRRLFIMNMENNSHTTSPYIQLIEQIAVLQQEAKRLREQEVQSVIESIQKQITYYNITLQ  60
            MRRLFIMNME NSHTTSPYIQLIEQI VLQQEAKRLREQE+QSVIESIQKQITYYNITLQ
Sbjct  1    MRRLFIMNMETNSHTTSPYIQLIEQIEVLQQEAKRLREQEIQSVIESIQKQITYYNITLQ  60

Query  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120
            ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE
Sbjct  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120

Query  121  EEIIPLKNI  129
            +EIIPLKNI
Sbjct  121  DEIIPLKNI  129

5) G2583_4443 in NC_013941


> AF453442|13|G13|18034563|AAL57584.1|Escherichia_coli_REPEC_84/110-1|+|8458..8847|ler|-|Ler
Length=129

 Score =  208 bits (774),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 125/129 (97%), Positives = 127/129 (99%), Gaps = 0/129 (0%)

Query  1    MRRLFIMNMENNSHTTSPYIQLIEQIAVLQQEAKRLREQEVQSVIESIQKQITYYNITLQ  60
            MRRLFIMNME NSHTTSPYIQLIEQI VLQQEAKRLREQE+QSVIESIQKQITYYNITLQ
Sbjct  1    MRRLFIMNMETNSHTTSPYIQLIEQIEVLQQEAKRLREQEIQSVIESIQKQITYYNITLQ  60

Query  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120
            ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE
Sbjct  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120

Query  121  EEIIPLKNI  129
            +EIIPLKNI
Sbjct  121  DEIIPLKNI  129

6) ECO55CA74_21315 in NC_017656


> AF453442|13|G13|18034563|AAL57584.1|Escherichia_coli_REPEC_84/110-1|+|8458..8847|ler|-|Ler
Length=129

 Score =  208 bits (774),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 125/129 (97%), Positives = 127/129 (99%), Gaps = 0/129 (0%)

Query  1    MRRLFIMNMENNSHTTSPYIQLIEQIAVLQQEAKRLREQEVQSVIESIQKQITYYNITLQ  60
            MRRLFIMNME NSHTTSPYIQLIEQI VLQQEAKRLREQE+QSVIESIQKQITYYNITLQ
Sbjct  1    MRRLFIMNMETNSHTTSPYIQLIEQIEVLQQEAKRLREQEIQSVIESIQKQITYYNITLQ  60

Query  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120
            ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE
Sbjct  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120

Query  121  EEIIPLKNI  129
            +EIIPLKNI
Sbjct  121  DEIIPLKNI  129

7) CDCO157_4323 in NC_017906


> AF453442|13|G13|18034563|AAL57584.1|Escherichia_coli_REPEC_84/110-1|+|8458..8847|ler|-|Ler
Length=129

 Score =  208 bits (774),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 125/129 (97%), Positives = 127/129 (99%), Gaps = 0/129 (0%)

Query  1    MRRLFIMNMENNSHTTSPYIQLIEQIAVLQQEAKRLREQEVQSVIESIQKQITYYNITLQ  60
            MRRLFIMNME NSHTTSPYIQLIEQI VLQQEAKRLREQE+QSVIESIQKQITYYNITLQ
Sbjct  1    MRRLFIMNMETNSHTTSPYIQLIEQIEVLQQEAKRLREQEIQSVIESIQKQITYYNITLQ  60

Query  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120
            ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE
Sbjct  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120

Query  121  EEIIPLKNI  129
            +EIIPLKNI
Sbjct  121  DEIIPLKNI  129

8) ler in NC_013716


> AF453442|13|G13|18034563|AAL57584.1|Escherichia_coli_REPEC_84/110-1|+|8458..8847|ler|-|Ler
Length=129

 Score =  197 bits (730),  Expect = 4e-52, Method: Compositional matrix adjust.
 Identities = 115/129 (90%), Positives = 125/129 (97%), Gaps = 0/129 (0%)

Query  1    MRRLFIMNMETNSPTTSPYIQLIEQIAVLQQEAKRLREQEIQTVIESIQKQITYYNITLQ  60
            MRRLFIMNMETNS TTSPYIQLIEQI VLQQEAKRLREQEIQ+VIESIQKQITYYNITLQ
Sbjct  1    MRRLFIMNMETNSHTTSPYIQLIEQIEVLQQEAKRLREQEIQSVIESIQKQITYYNITLQ  60

Query  61   ELGYTNIPDGALARRSSSKGVYYRNEDGQTWSGVGRQPRWLKEALLNGRKKEDFLVKDTE  120
            ELGYTN+PD++LARR+SSKGVYYRNE+GQTWSGVGRQPRWLKEALLNG KKEDFLVKDTE
Sbjct  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120

Query  121  EEVTSLNNI  129
            +E+ +L+NI
Sbjct  121  DEIIPLKNI  129

9) ECH74115_5080 in NC_011353


> AF453442|13|G13|18034563|AAL57584.1|Escherichia_coli_REPEC_84/110-1|+|8458..8847|ler|-|Ler
Length=129

 Score =  196 bits (728),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 119/123 (97%), Positives = 121/123 (99%), Gaps = 0/123 (0%)

Query  1    MNMENNSHTTSPYIQLIEQIAVLQQEAKRLREQEVQSVIESIQKQITYYNITLQELGYTN  60
            MNME NSHTTSPYIQLIEQI VLQQEAKRLREQE+QSVIESIQKQITYYNITLQELGYTN
Sbjct  7    MNMETNSHTTSPYIQLIEQIEVLQQEAKRLREQEIQSVIESIQKQITYYNITLQELGYTN  66

Query  61   VPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTEEEIIPL  120
            VPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE+EIIPL
Sbjct  67   VPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTEDEIIPL  126

Query  121  KNI  123
            KNI
Sbjct  127  KNI  129

10) ler in NC_013008


> AF453442|13|G13|18034563|AAL57584.1|Escherichia_coli_REPEC_84/110-1|+|8458..8847|ler|-|Ler
Length=129

 Score =  196 bits (728),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 119/123 (97%), Positives = 121/123 (99%), Gaps = 0/123 (0%)

Query  1    MNMENNSHTTSPYIQLIEQIAVLQQEAKRLREQEVQSVIESIQKQITYYNITLQELGYTN  60
            MNME NSHTTSPYIQLIEQI VLQQEAKRLREQE+QSVIESIQKQITYYNITLQELGYTN
Sbjct  7    MNMETNSHTTSPYIQLIEQIEVLQQEAKRLREQEIQSVIESIQKQITYYNITLQELGYTN  66

Query  61   VPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTEEEIIPL  120
            VPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE+EIIPL
Sbjct  67   VPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTEDEIIPL  126

Query  121  KNI  123
            KNI
Sbjct  127  KNI  129

11) ler in NC_013353


> AF453442|13|G13|18034563|AAL57584.1|Escherichia_coli_REPEC_84/110-1|+|8458..8847|ler|-|Ler
Length=129

 Score =  186 bits (691),  Expect = 5e-49, Method: Compositional matrix adjust.
 Identities = 129/129 (100%), Positives = 129/129 (100%), Gaps = 0/129 (0%)

Query  1    MRRLFIMNMETNSHTTSPYiqlieqievlqqeAKRLREQEIQSVIESIQKQITYYNITLQ  60
            MRRLFIMNMETNSHTTSPYIQLIEQIEVLQQEAKRLREQEIQSVIESIQKQITYYNITLQ
Sbjct  1    MRRLFIMNMETNSHTTSPYIQLIEQIEVLQQEAKRLREQEIQSVIESIQKQITYYNITLQ  60

Query  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120
            ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE
Sbjct  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120

Query  121  DEIIPLKNI  129
            DEIIPLKNI
Sbjct  121  DEIIPLKNI  129

12) ler in NC_013361


> AF453442|13|G13|18034563|AAL57584.1|Escherichia_coli_REPEC_84/110-1|+|8458..8847|ler|-|Ler
Length=129

 Score =  186 bits (691),  Expect = 5e-49, Method: Compositional matrix adjust.
 Identities = 129/129 (100%), Positives = 129/129 (100%), Gaps = 0/129 (0%)

Query  1    MRRLFIMNMETNSHTTSPYiqlieqievlqqeAKRLREQEIQSVIESIQKQITYYNITLQ  60
            MRRLFIMNMETNSHTTSPYIQLIEQIEVLQQEAKRLREQEIQSVIESIQKQITYYNITLQ
Sbjct  1    MRRLFIMNMETNSHTTSPYIQLIEQIEVLQQEAKRLREQEIQSVIESIQKQITYYNITLQ  60

Query  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120
            ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE
Sbjct  61   ELGYTNVPDDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWLKEALLNGMKKEDFLVKDTE  120

Query  121  DEIIPLKNI  129
            DEIIPLKNI
Sbjct  121  DEIIPLKNI  129

13) bgla_1p0180 in NC_015382


> AF453442|13|G13|18034563|AAL57584.1|Escherichia_coli_REPEC_84/110-1|+|8458..8847|ler|-|Ler
Length=129

 Score = 51.1 bits (174),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 38/93 (41%), Positives = 53/93 (57%), Gaps = 9/93 (9%)

Query  1    MNSNHHRT--YKQVKDELAVLQQEAEVLRRQEAQSVLAEIQEKIKEYNFSEKEIS-----  53
            M++N H T  Y Q+ +++ VLQQEA  LR QE QSV+  IQ +I  YN++ +E++     
Sbjct  9    METNSHTTSPYIQLIEQIEVLQQEAKRLREQEIQSVIESIQKQITYYNITLQELGYTNVP  68

Query  54   --ALFRPAHRTPKYMDPETGSTWSGRGRPPAWI  84
              +L R       Y   E G TWSG GR P W+
Sbjct  69   DDGLARRNSSKGVYYRNEEGQTWSGVGRQPRWL  101