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Homologs of hrpS gene of AF083877

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpS
( YP_003539957.1 )

sigma-54-dependent enhancer-binding protein

NC_013971
(Erwinia amylovora ATCC 49946)

3e-153

100

2) hrpS
( YP_003529897.1 )

sigma-54-dependent enhancer-binding protein HrpS

NC_013961
(Erwinia amylovora CFBP1430)

3e-153

100

3) hrpS
( YP_005804080.1 )

Sigma-54-dependent enhancer-binding protein HrpS

NC_017390
(Erwinia pyrifoliae DSM 12163)

4e-150

4) hrpS
( YP_002650063.1 )

Hrp/hrc secretion/translocation pathway protein HrpS

NC_012214
(Erwinia pyrifoliae Ep1/96)

4e-150

5) hrpS
( YP_001906474.1 )

Sigma-54-dependent enhancer-binding protein HrpS (hrp cluster)

NC_010694
(Erwinia tasmaniensis Et1/99)

4e-140

6) hrpS
( YP_005818266.1 )

hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrpS protein

NC_017445
(Erwinia sp. Ejp617)

8e-140

7) Ser39006_2908
( YP_008523290.1 )

sigma54 specific transcriptional regulator, Fis family

NC_022268
(Serratia sp. ATCC 39006)

4e-92

8) Dd586_1893
( YP_003333457.1 )

sigma54 specific transcriptional regulator, Fis family

NC_013592
(Dickeya dadantii Ech586)

4e-90

9) hrpS
( YP_003883235.1 )

HrpS type III protein secretion system regulatory protein

NC_014500
(Dickeya dadantii 3937)

6e-90

10) Dd1591_1896
( YP_003004225.1 )

sigma54 specific transcriptional regulator, Fis family

NC_012912
(Dickeya zeae Ech1591)

9e-90

11) PC1_2201
( YP_003017776.1 )

Fis family sigma-54 specific transcriptional regulator

NC_012917
(Pectobacterium carotovorum PC1)

5e-89

12) hrpS
( YP_050185.1 )

sigma-54-dependent enhancer-binding protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

4e-88

13) PCC21_022790
( YP_006646935.1 )

HrpS

NC_018525
(Pectobacterium carotovorum PCC21)

8e-88

14) rspS
( YP_006322245.1 )

type III secretion system transcriptional regulator RspS

NC_017911
(Pseudomonas fluorescens A506)

2e-77

15) PSEBR_a5366
( YP_004356874.1 )

Fis family transcriptional regulator

NC_015379
(Pseudomonas brassicacearum NFM421)

2e-76

16) hrpS
( YP_005210952.1 )

protein HrpS

NC_016830
(Pseudomonas fluorescens F113)

1e-75

17) D781_3924
( YP_007346299.1 )

sigma-54 interacting regulator

NC_020064
(Serratia marcescens FGI94)

4e-74

18) rspR
( YP_002870393.1 )

putative type III secretion system, regulatory protein

NC_012660
(Pseudomonas fluorescens SBW25)

1e-72

19) Pmen_0033
( YP_001185540.1 )

sigma-54 dependent trancsriptional regulator

NC_009439
(Pseudomonas mendocina ymp)

1e-72

20) hrpR
( YP_273529.1 )

type III transcriptional regulator HrpR

NC_005773
(Pseudomonas syringae 1448A)

3e-70

21) hrpR
( NP_791206.1 )

type III transcriptional regulator HrpR

NC_004578
(Pseudomonas syringae DC3000)

2e-69

22) HrpR
( YP_234282.1 )

type III transcriptional regulator HrpR

NC_007005
(Pseudomonas syringae B728a)

3e-69

23) hrpS
( NP_791207.1 )

type III transcriptional regulator HrpS

NC_004578
(Pseudomonas syringae DC3000)

1e-67

24) hrpS
( YP_273530.1 )

type III transcriptional regulator HrpS

NC_005773
(Pseudomonas syringae 1448A)

3e-64

25) HrpS
( YP_234283.1 )

type III transcriptional regulator HrpS

NC_007005
(Pseudomonas syringae B728a)

7e-64

26) Pmen_0032
( YP_001185539.1 )

sigma-54 dependent trancsriptional regulator

NC_009439
(Pseudomonas mendocina ymp)

3e-63

27) H045_00470
( YP_007395666.1 )

type III secretion system transcriptional regulator RspS

NC_020209
(Pseudomonas poae RE*1-1-14)

5e-57

28) PADK2_13500
( YP_006482683.1 )

transcriptional regulator

NC_018080
(Pseudomonas aeruginosa DK2)

1e-45

29) G655_13280
( YP_007709499.1 )

putative transcriptional regulator

NC_020912
(Pseudomonas aeruginosa B136-33)

8e-46

30) PLES_29491
( YP_002440538.1 )

putative transcriptional regulator

NC_011770
(Pseudomonas aeruginosa LESB58)

9e-46

31) PAM18_2687
( YP_005975272.1 )

putative transcriptional regulator

NC_017548
(Pseudomonas aeruginosa M18)

9e-46

32) PA2354
( NP_251044.1 )

transcriptional regulator

NC_002516
(Pseudomonas aeruginosa PAO1)

9e-46

33) M062_12275
( YP_008132888.1 )

Fis family transcriptional regulator

NC_021577
(Pseudomonas aeruginosa RP73)

9e-46

34) lafK
( YP_006094585.1 )

lateral flagellar RpoN-interacting regulatory protein

NC_017626
(Escherichia coli 042)

9e-41

35) lafK
( YP_002411028.1 )

lateral flagellar RpoN-interacting regulatory protein

NC_011751
(Escherichia coli UMN026)

9e-41

36) BN4_10776
( YP_007493164.1 )

Sigma54 specific transcriptional regulator, Fis family

NC_020409
(Desulfovibrio piezophilus C1TLV30)

1e-40

37) Nhal_2343
( YP_003527818.1 )

Fis family transcriptional regulator

NC_013960
(Nitrosococcus halophilus Nc 4)

3e-40

38) ECNA114_0217
( YP_006137313.1 )

hypothetical protein

NC_017644
(Escherichia coli NA114)

2e-39

39) Desac_1380
( YP_004370417.1 )

Fis family transcriptional regulator

NC_015388
(Desulfobacca acetoxidans DSM 11109)

2e-39

40) lafK
( YP_001742355.1 )

lateral flagellar RpoN-interacting regulatory protein LafK

NC_010498
(Escherichia coli SMS-3-5)

3e-39

41) EcolC_3384
( YP_001726330.1 )

putative sigma-54 specific transcriptional regulator

NC_010468
(Escherichia coli ATCC 8739)

4e-39

42) lafK
( YP_003232799.1 )

putative lateral flagellar RpoN-interacting regulatory protein

NC_013364
(Escherichia coli 11128)

5e-39

43) lafK
( YP_003227342.1 )

lateral flagellar RpoN-interacting regulatory protein

NC_013361
(Escherichia coli 11368)

5e-39

44) EKO11_3664
( YP_005279302.1 )

Fis family sigma-54 specific transcriptional regulator

NC_016902
(Escherichia coli KO11FL)

5e-39

45) KO11_01240
( YP_006162590.1 )

putative lateral flagellar RpoN-interacting regulatory protein

NC_017660
(Escherichia coli KO11FL)

5e-39

46) pspF
( YP_008563403.1 )

transcriptional regulator

NC_022364
(Escherichia coli LY180)

5e-39

47) lafK
( YP_006123041.1 )

Lateral flagellar RpoN-interacting regulatory protein

NC_017635
(Escherichia coli W)

5e-39

48) WFL_01245
( YP_006171704.1 )

putative lateral flagellar RpoN-interacting regulatory protein

NC_017664
(Escherichia coli W)

5e-39

49) Metme_3757
( YP_004514614.1 )

Fis family transcriptional regulator

NC_015572
(Methylomonas methanica MC09)

3e-38

50) Cpha266_1886
( YP_912326.1 )

sigma-54 dependent trancsriptional regulator

NC_008639
(Chlorobium phaeobacteroides DSM 266)

1e-37

51) DND132_0036
( YP_005166058.1 )

sigma-54 factor interaction domain-containing protein

NC_016803
(Desulfovibrio desulfuricans ND132)

1e-37

52) Desaf_3756
( YP_005053691.1 )

Fis family sigma-54 specific transcriptional regulator

NC_016629
(Desulfovibrio africanus Walvis Bay)

8e-37

53) DGI_0391
( YP_008589480.1 )

putative Fis family transcriptional regulator

NC_022444
(Desulfovibrio gigas ATCC 19364)

2e-36

54) DMR_31690
( YP_002954546.1 )

fis family transcriptional regulator

NC_012796
(Desulfovibrio magneticus RS-1)

2e-35

55) Hneap_1253
( YP_003263136.1 )

hypothetical protein

NC_013422
(Halothiobacillus neapolitanus c2)

6e-34

56) Spea_0085
( YP_001499949.1 )

sigma-54 dependent trancsriptional regulator

NC_009901
(Shewanella pealeana ATCC 700345)

8e-34

57) SpiGrapes_2045
( YP_005062842.1 )

response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains

NC_016633
(Sphaerochaeta pleomorpha Grapes)

6e-33

58) pspF
( YP_005030260.1 )

DNA-binding transcriptional activator

NC_016617
(Azospirillum brasilense Sp245)

4e-31

59) A225_2562
( YP_006498278.1 )

Psp operon transcriptional activator

NC_018106
(Klebsiella oxytoca E718)

2e-30

60) pspF
( YP_005019666.1 )

phage shock protein operon transcriptional activator

NC_016612
(Klebsiella oxytoca KCTC 1686)

2e-30

61) Fbal_2587
( YP_003913863.1 )

Fis family transcriptional regulator

NC_014541
(Ferrimonas balearica DSM 9799)

3e-27

• Sequence Alignments

1) hrpS in NC_013971


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  534 bits (2014),  Expect = 3e-153, Method: Compositional matrix adjust.
 Identities = 324/324 (100%), Positives = 324/324 (100%), Gaps = 0/324 (0%)

Query  1    MNIRNSEHSSRPWPGRREHISLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDT  60
            MNIRNSEHSSRPWPGRREHISLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDT
Sbjct  1    MNIRNSEHSSRPWPGRREHISLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDT  60

Query  61   LARKIHQLSGCRGKLVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILF  120
            LARKIHQLSGCRGKLVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILF
Sbjct  61   LARKIHQLSGCRGKLVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILF  120

Query  121  LDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDL  180
            LDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDL
Sbjct  121  LDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDL  180

Query  181  YFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNI  240
            YFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNI
Sbjct  181  YFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNI  240

Query  241  RELKAAAERFVLGLPPLDLPCHCGQERPQLKELMRRIEKNVIYDCLVRHGHSIDDAAQEL  300
            RELKAAAERFVLGLPPLDLPCHCGQERPQLKELMRRIEKNVIYDCLVRHGHSIDDAAQEL
Sbjct  241  RELKAAAERFVLGLPPLDLPCHCGQERPQLKELMRRIEKNVIYDCLVRHGHSIDDAAQEL  300

Query  301  GIPLRTLYHRIKLLNVNTGRVIAQ  324
            GIPLRTLYHRIKLLNVNTGRVIAQ
Sbjct  301  GIPLRTLYHRIKLLNVNTGRVIAQ  324

2) hrpS in NC_013961


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  534 bits (2014),  Expect = 3e-153, Method: Compositional matrix adjust.
 Identities = 324/324 (100%), Positives = 324/324 (100%), Gaps = 0/324 (0%)

Query  1    MNIRNSEHSSRPWPGRREHISLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDT  60
            MNIRNSEHSSRPWPGRREHISLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDT
Sbjct  1    MNIRNSEHSSRPWPGRREHISLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDT  60

Query  61   LARKIHQLSGCRGKLVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILF  120
            LARKIHQLSGCRGKLVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILF
Sbjct  61   LARKIHQLSGCRGKLVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILF  120

Query  121  LDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDL  180
            LDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDL
Sbjct  121  LDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDL  180

Query  181  YFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNI  240
            YFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNI
Sbjct  181  YFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNI  240

Query  241  RELKAAAERFVLGLPPLDLPCHCGQERPQLKELMRRIEKNVIYDCLVRHGHSIDDAAQEL  300
            RELKAAAERFVLGLPPLDLPCHCGQERPQLKELMRRIEKNVIYDCLVRHGHSIDDAAQEL
Sbjct  241  RELKAAAERFVLGLPPLDLPCHCGQERPQLKELMRRIEKNVIYDCLVRHGHSIDDAAQEL  300

Query  301  GIPLRTLYHRIKLLNVNTGRVIAQ  324
            GIPLRTLYHRIKLLNVNTGRVIAQ
Sbjct  301  GIPLRTLYHRIKLLNVNTGRVIAQ  324

3) hrpS in NC_017390


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  523 bits (1974),  Expect = 4e-150, Method: Compositional matrix adjust.
 Identities = 314/324 (97%), Positives = 322/324 (99%), Gaps = 0/324 (0%)

Query  1    MNIRNSEHSSRPWPGRREHISLTEEQPIDIHDTLSEMIKTVAPLKIDLVLEGETGTGKDT  60
            MNIRNSEHSSRPWPGRREHISLTEEQPIDIHDTL+EMIKTVAPLKIDLVLEGETGTGKDT
Sbjct  1    MNIRNSEHSSRPWPGRREHISLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDT  60

Query  61   LARKIHQLSGCKGKLVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILF  120
            LARKIHQLSGC+GKLVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILF
Sbjct  61   LARKIHQLSGCRGKLVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILF  120

Query  121  LDEIDSMPLSLQAKMLRVLENRGVERLGGTQFTPVNMRVIVATQTPLLTLVERGSFRRDL  180
            LDEIDSMPLSLQAKMLRVLENRGVERLGGT+FTPVNMRVIVATQTPLLTLVERGSFRRDL
Sbjct  121  LDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDL  180

Query  181  YFRLNTVSIQLQPLRARIEVIIPLFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNI  240
            YFRLNTVSIQLQPLRARIEVIIP+FRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNI
Sbjct  181  YFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNI  240

Query  241  RELKAAAERFVLGLPPLGLSCHCGQERPQLKELMRRIEKNVIHDCLVRHGHSIDDAAQEL  300
            RELKAAAERFVLGLPPL+L+CHCGQERPQLKELMRRIEKNVI DCLVRHGHSIDDAAQEL
Sbjct  241  RELKAAAERFVLGLPPLDLPCHCGQERPQLKELMRRIEKNVIYDCLVRHGHSIDDAAQEL  300

Query  301  GIPLRTLYHRIKLLNVATSRVIGQ  324
            GIPLRTLYHRIKLLNV T+RVI+Q
Sbjct  301  GIPLRTLYHRIKLLNVNTGRVIAQ  324

4) hrpS in NC_012214


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  523 bits (1974),  Expect = 4e-150, Method: Compositional matrix adjust.
 Identities = 314/324 (97%), Positives = 322/324 (99%), Gaps = 0/324 (0%)

Query  1    MNIRNSEHSSRPWPGRREHISLTEEQPIDIHDTLSEMIKTVAPLKIDLVLEGETGTGKDT  60
            MNIRNSEHSSRPWPGRREHISLTEEQPIDIHDTL+EMIKTVAPLKIDLVLEGETGTGKDT
Sbjct  1    MNIRNSEHSSRPWPGRREHISLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDT  60

Query  61   LARKIHQLSGCKGKLVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILF  120
            LARKIHQLSGC+GKLVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILF
Sbjct  61   LARKIHQLSGCRGKLVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILF  120

Query  121  LDEIDSMPLSLQAKMLRVLENRGVERLGGTQFTPVNMRVIVATQTPLLTLVERGSFRRDL  180
            LDEIDSMPLSLQAKMLRVLENRGVERLGGT+FTPVNMRVIVATQTPLLTLVERGSFRRDL
Sbjct  121  LDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDL  180

Query  181  YFRLNTVSIQLQPLRARIEVIIPLFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNI  240
            YFRLNTVSIQLQPLRARIEVIIP+FRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNI
Sbjct  181  YFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNI  240

Query  241  RELKAAAERFVLGLPPLGLSCHCGQERPQLKELMRRIEKNVIHDCLVRHGHSIDDAAQEL  300
            RELKAAAERFVLGLPPL+L+CHCGQERPQLKELMRRIEKNVI DCLVRHGHSIDDAAQEL
Sbjct  241  RELKAAAERFVLGLPPLDLPCHCGQERPQLKELMRRIEKNVIYDCLVRHGHSIDDAAQEL  300

Query  301  GIPLRTLYHRIKLLNVATSRVIGQ  324
            GIPLRTLYHRIKLLNV T+RVI+Q
Sbjct  301  GIPLRTLYHRIKLLNVNTGRVIAQ  324

5) hrpS in NC_010694


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  490 bits (1846),  Expect = 4e-140, Method: Compositional matrix adjust.
 Identities = 292/324 (91%), Positives = 313/324 (97%), Gaps = 0/324 (0%)

Query  1    MSIRNSEFSFRHWPEQGEHISLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDT  60
            M+IRNSE S R WP + EHISLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDT
Sbjct  1    MNIRNSEHSSRPWPGRREHISLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDT  60

Query  61   LARKIHQLSGCSGKLVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAAHNGILF  120
            LARKIHQLSGC GKLVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAA+NGILF
Sbjct  61   LARKIHQLSGCRGKLVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILF  120

Query  121  LDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDL  180
            LDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDL
Sbjct  121  LDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDL  180

Query  181  YFRLNTVSIQLQPLRARIEIIIPLFRYFIQQAATTLQCPQREITQEHYECLLSYGWPGNI  240
            YFRLNTVSIQLQPLRARIE+IIP+FR FIQ+AA+TLQC+ REITQEHYECLLSY+WPGNI
Sbjct  181  YFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNI  240

Query  241  RELKAAAERFVLGLPPLGFSCHCEDERPRLKEMMRRIEKSLIHDCLLRHGHSIDDAAQEL  300
            RELKAAAERFVLGLPPL+++CHC +ERP+LKE+MRRIEK++I DCL+RHGHSIDDAAQEL
Sbjct  241  RELKAAAERFVLGLPPLDLPCHCGQERPQLKELMRRIEKNVIYDCLVRHGHSIDDAAQEL  300

Query  301  GIPLRTLYHRIKLLNVTTSRMVAQ  324
            GIPLRTLYHRIKLLNV T+R++AQ
Sbjct  301  GIPLRTLYHRIKLLNVNTGRVIAQ  324

6) hrpS in NC_017445


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  489 bits (1843),  Expect = 8e-140, Method: Compositional matrix adjust.
 Identities = 293/303 (97%), Positives = 301/303 (99%), Gaps = 0/303 (0%)

Query  1    MTEEQPIDIHDTLSEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCKGKLVAVNCA  60
            +TEEQPIDIHDTL+EMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGC+GKLVAVNCA
Sbjct  22   LTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCA  81

Query  61   AIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLEN  120
            AIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLEN
Sbjct  82   AIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLEN  141

Query  121  RGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVI  180
            RGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVI
Sbjct  142  RGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVI  201

Query  181  IPLFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLGLSC  240
            IP+FRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPL+L+C
Sbjct  202  IPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPC  261

Query  241  HCGQERPQLKELMRRIEKNVIHDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVATSRV  300
            HCGQERPQLKELMRRIEKNVI DCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNV T+RV
Sbjct  262  HCGQERPQLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVNTGRV  321

Query  301  IGQ  303
            I+Q
Sbjct  322  IAQ  324

7) Ser39006_2908 in NC_022268


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  330 bits (1240),  Expect = 4e-92, Method: Compositional matrix adjust.
 Identities = 198/292 (68%), Positives = 244/292 (84%), Gaps = 1/292 (0%)

Query  28   DIHGTLLSLINDIAPLNVDIVLEGETGTGKDTLARRIHKLSGCSGPLVAVNCAAIPESLA  87
            DIH+TL  +I+ +APL++D+VLEGETGTGKDTLAR+IH+LSGC G LVAVNCAAIPE+LA
Sbjct  29   DIHDTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCAAIPETLA  88

Query  88   ESELFGVVSGAYTGANRSRAGYLETADKGILFLDEIDSMPLTLQAKMLRVLENRGIERLG  147
            ESELFG+ +GAYTGA ++RAGY+E+AD+GILFLDEIDSMPL+LQAKMLRVLENRG+ERLG
Sbjct  89   ESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLG  148

Query  148  STQFKAVDMRVIVATQTPLSKLVEEGRFRRDLYFRLDTVKIQLPTLRSRIDIILPMFQRF  207
            +T+F +V+MRVIVATQTPL  LVE G FRRDLYFRL+TV IQL  LR+RI++I+PMF+ F
Sbjct  149  GTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSF  208

Query  208  TREASARLKRSSPPIPVSVHERLLTHSWQGNIRELKAAAERWVLGLPPLPMVMETSAQHH  267
             + A++ L+ ++  I     E LL+ SW GNIRELKAAAER VLGLPPL +  +  +Q++
Sbjct  209  IQKAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCH-CGQER  267

Query  268  PLLKERLRRIEKFLIQDALTRNGHCIDDVVTELGIPKRTLYHRIKLLNVRSA  319
            P LKE +RRIEK +I D L R+GH IDD   ELGIP RTLYHRIKLLNV ++
Sbjct  268  PQLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVNTG  319

8) Dd586_1893 in NC_013592


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  324 bits (1215),  Expect = 4e-90, Method: Compositional matrix adjust.
 Identities = 195/306 (64%), Positives = 245/306 (81%), Gaps = 5/306 (1%)

Query  17   SHESLLTPPLEDIHGPLSSLIHTIAPLHVDIVLEGETGTGKDTLARRIHQLSGCPGPLVA  76
             H SL      DIH+ L+ +I T+APL +D+VLEGETGTGKDTLAR+IHQLSGC G LVA
Sbjct  18   EHISLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVA  77

Query  77   VNCAAVPETLAESELFGVVSGAYTGASRSRAGYLEIADKGILFLDEIDSMPLTLQAKMLR  136
            VNCAA+PETLAESELFG+ +GAYTGA+++RAGY+E AD+GILFLDEIDSMPL+LQAKMLR
Sbjct  78   VNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLR  137

Query  137  VLESRGIERLGSTQFKPVNMRVIVATQTPLHKLVEKGRFRRDLYFRLDTVKIQLPTLRSR  196
            VLE+RG+ERLG+T+F PVNMRVIVATQTPL  LVE+G FRRDLYFRL+TV IQL  LR+R
Sbjct  138  VLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRAR  197

Query  197  TEIILPLFQRFLHDAAARLKRPVPGVSAMMQEQLLMHDWPGNIRELKAAAERWVLGLSPV  256
             E+I+P+F+ F++ AA+ L+ +   ++    E LL   WPGNIRELKAAAER VLGL+P+
Sbjct  198  IEVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPL  257

Query  257  PVAADGGKAGNDTPLTSLKVRLRRIERFLIQEALQRNDHCIDNVVHELGIPKRTLYHRIK  316
             ++ +    G++ P   LK  +RRIE+ +I + L R++H ID+  +ELGIP RTLYHRIK
Sbjct  258  DLPCH---CGQERP--QLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIK  312

Query  317  LLNVAA  322
            LLNV +
Sbjct  313  LLNVNT  318

9) hrpS in NC_014500


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  323 bits (1212),  Expect = 6e-90, Method: Compositional matrix adjust.
 Identities = 198/325 (61%), Positives = 260/325 (80%), Gaps = 8/325 (2%)

Query  1    MTIRNSNESVQSLHCASHESSLTH-PSEDIHGSLSSLIHTIAPLNVDIVLEGETGTGKDT  59
            M IRNS++S ++     ++ SLT+  + DIH++L+ +I T+APL++D+VLEGETGTGKDT
Sbjct  1    MNIRNSEHSSRPWPGRREHISLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDT  60

Query  60   LARRIHQLSGCAGPLVAVNCAAVPETLAESELFGVVSGAYTGASRSRAGYLETADKGILF  119
            LAR+IHQLSGC G LVAVNCAA+PETLAESELFG+ +GAYTGA+++RAGY+E+AD+GILF
Sbjct  61   LARKIHQLSGCRGKLVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILF  120

Query  120  LDEIDSMPLTLQAKMLRVLESRGIERLGSTQFKPVDMRVIVATQTPLQKLVDEGRFRRDL  179
            LDEIDSMPL+LQAKMLRVLE+RG+ERLG+T+F PV+MRVIVATQTPL  LV+ G FRRDL
Sbjct  121  LDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDL  180

Query  180  YFRLDTVKIQLPTLRSRTEIILPLFERFLLEASARLKRPAPGLSAIIQEQLLMHGWPGNI  239
            YFRL+TV IQL  LR+R E+I+P+F  F+  A++ L+ ++  ++    E LL  +WPGNI
Sbjct  181  YFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNI  240

Query  240  RELKAAAERWVLGLSPVPIASDGDVQVMGEDTPLTSLKVRLRRIERFLIQEALQRNDHCI  299
            RELKAAAER VLGL+P+ ++ +      G++ P   LK  +RRIE+ +I + L R++H I
Sbjct  241  RELKAAAERFVLGLPPLDLPCHC-----GQERP--QLKELMRRIEKNVIYDCLVRHGHSI  293

Query  300  DTVVNELGIPKRTLYHRIKLLNVAA  324
            D   +ELGIP RTLYHRIKLLNV +
Sbjct  294  DDAAQELGIPLRTLYHRIKLLNVNT  318

10) Dd1591_1896 in NC_012912


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  323 bits (1210),  Expect = 9e-90, Method: Compositional matrix adjust.
 Identities = 196/323 (61%), Positives = 258/323 (80%), Gaps = 6/323 (1%)

Query  1    MTLRNSNEFSQSLHCATHHF-LSTQQSEDIHGSLASLIHTIAPLNVDIVLEGETGTGKDT  59
            M +RNS++ S++     +H+ L+ +Q+ DIH++LA +I T+APL++D+VLEGETGTGKDT
Sbjct  1    MNIRNSEHSSRPWPGRREHISLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDT  60

Query  60   LARRIHQLSGCAGPLVAVNCAAVPETLAESELFGVVSGAYTGASRSRAGYLETADKGILF  119
            LAR+IHQLSGC G LVAVNCAA+PETLAESELFG+ +GAYTGA+++RAGY+E+AD+GILF
Sbjct  61   LARKIHQLSGCRGKLVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILF  120

Query  120  LDEIDSMPLTLQAKMLRVLESRGIERLGSTQFKPVDMRVIVATQTPLQKLVDEGRFRRDL  179
            LDEIDSMPL+LQAKMLRVLE+RG+ERLG+T+F PV+MRVIVATQTPL  LV+ G FRRDL
Sbjct  121  LDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDL  180

Query  180  YFRLDTVKIQLPTLRSRTDIILPLFQRFLHDAAARLKLSVPGVSVIMQEQLLMHDWPGNI  239
            YFRL+TV IQL  LR+R ++I+P+F+ F++ AA+ L+ +   ++    E LL   WPGNI
Sbjct  181  YFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNI  240

Query  240  RELKAAAERWVLGLSPVPIVADGDGAESDTPLTSLKVRLRRIERFLIQEALQRNDHCIDT  299
            RELKAAAER VLGL+P+ +  + +   ++     LK  +RRIE+ +I + L R++H ID 
Sbjct  241  RELKAAAERFVLGLPPLDLPCHCGQERPQ-----LKELMRRIEKNVIYDCLVRHGHSIDD  295

Query  300  VVSELGIPKRTLYHRIKLLNVAA  322
               ELGIP RTLYHRIKLLNV +
Sbjct  296  AAQELGIPLRTLYHRIKLLNVNT  318

11) PC1_2201 in NC_012917


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  320 bits (1201),  Expect = 5e-89, Method: Compositional matrix adjust.
 Identities = 192/291 (66%), Positives = 238/291 (82%), Gaps = 1/291 (0%)

Query  49   DIHSSLSPIINVIAPLNVDIVLEGETGTGKDTLANRIHRLSRCSGPLVAVNCAAVPENLA  108
            DIH +L+ +I+ +APL++D+VLEGETGTGKDTLA +IH+LS C G LVAVNCAA+PE LA
Sbjct  29   DIHDTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCAAIPETLA  88

Query  109  ESELFGVVSGAYTGANRSRAGYLESADKGILFLDEIDSMPMTLQAKMLRVLESRGVKRLG  168
            ESELFG+ +GAYTGA ++RAGY+E+AD+GILFLDEIDSMP++LQAKMLRVLE+RGV RLG
Sbjct  89   ESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLG  148

Query  169  STQFTPVDMRVIVATQTPLLQLVEKGLFRRDLYFRLDTVKIQLPTLRSRSDLILPLFQRF  228
            +T+FTPV+MRVIVATQTPLL LVE+G FRRDLYFRL+TV IQL  LR+R ++I+P+F+ F
Sbjct  149  GTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSF  208

Query  229  SQEAAVRLRMTQPPMTAEIYEQLLTHSWPGNIRELKAAADRWAMGLSPLAEIQPLLHPRP  288
             Q AA  L+ +   +T E YE LL+ SWPGNIRELKAAA+R  +GL+PL       + RP
Sbjct  209  IQKAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERP  268

Query  289  LQLKDRLKRIEKFLIQDALRRHGHCIDDVIVELGIPKRTLYHRLKVLNVTV  339
             QLK+ ++RIEK +I D L RHGH IDD   ELGIP RTLYHR+K+LNV  
Sbjct  269  -QLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVNT  318

12) hrpS in NC_004547


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  317 bits (1190),  Expect = 4e-88, Method: Compositional matrix adjust.
 Identities = 191/291 (66%), Positives = 238/291 (82%), Gaps = 1/291 (0%)

Query  51   DIHSSLSPIINVIAPLNVDIVLEGETGTGKDTLANRIHQISQCSGPLVAVNCAAVPENLA  110
            DIH +L+ +I+ +APL++D+VLEGETGTGKDTLA +IHQ+S C G LVAVNCAA+PE LA
Sbjct  29   DIHDTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCAAIPETLA  88

Query  111  ESELFGVVSGAYTGANRSRAGYLESADKGILFLDEIDSMPMTLQAKMLRVLESRGVKRLG  170
            ESELFG+ +GAYTGA ++RAGY+E+AD+GILFLDEIDSMP++LQAKMLRVLE+RGV RLG
Sbjct  89   ESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLG  148

Query  171  STQFTPVDMRVIVATQTPLLQLVEKGLFRRDLYFRLDTVKIQLPTLRSRSDLILPLFQRF  230
            +T+FTPV+MRVIVATQTPLL LVE+G FRRDLYFRL+TV IQL  LR+R ++I+P+F+ F
Sbjct  149  GTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSF  208

Query  231  SQEAAVRLRMTLPPMTAEIDEQLLTHSWPGNIRELKAAADRWAMGLSPLAEIQQLLHPRP  290
             Q AA  L+ +   +T E  E LL+ SWPGNIRELKAAA+R  +GL+PL    +  + RP
Sbjct  209  IQKAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERP  268

Query  291  LQLKDRLKRIEKFLIQDALRRHGHCIDDVIVELGIPKRTLYHRLKVLNVTV  341
             QLK+ ++RIEK +I D L RHGH IDD   ELGIP RTLYHR+K+LNV  
Sbjct  269  -QLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVNT  318

13) PCC21_022790 in NC_018525


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  316 bits (1186),  Expect = 8e-88, Method: Compositional matrix adjust.
 Identities = 193/291 (67%), Positives = 238/291 (82%), Gaps = 1/291 (0%)

Query  53   DIHSSLAPIINVIAPLNVDIVLEGETGTGKDTLANRIHQLSRCSGPLVAVNCAAVPENLA  112
            DIH +LA +I+ +APL++D+VLEGETGTGKDTLA +IHQLS C G LVAVNCAA+PE LA
Sbjct  29   DIHDTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCAAIPETLA  88

Query  113  ESELFGVVSGAYTGANRSRAGYLESADKGILFLDEIDSMPMTLQAKMLRVLESRGVKRLG  172
            ESELFG+ +GAYTGA ++RAGY+E+AD+GILFLDEIDSMP++LQAKMLRVLE+RGV RLG
Sbjct  89   ESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLG  148

Query  173  STQFTPVDMRVIVATQTPLLQLVEKGLFRRDLYFRLDTVKIQLPTLRSRSDLILPLFQRF  232
            +T+FTPV+MRVIVATQTPLL LVE+G FRRDLYFRL+TV IQL  LR+R ++I+P+F+ F
Sbjct  149  GTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSF  208

Query  233  SQEAAVRLKMTLPPMTAEIHEQLLTHSWPGNIRELKAAADRWALGLSPLAEIQPLLHPRP  292
             Q AA  L+ +   +T E  E LL+ SWPGNIRELKAAA+R  LGL+PL       + RP
Sbjct  209  IQKAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERP  268

Query  293  LQLKDRLKRIEKFLIQDALRRHDHCIDDVIVELGIPKRTLYHRLKVLNVTA  343
             QLK+ ++RIEK +I D L RH+H IDD   ELGIP RTLYHR+K+LNV +
Sbjct  269  -QLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVNT  318

14) rspS in NC_017911


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  281 bits (1053),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 167/300 (56%), Positives = 231/300 (77%), Gaps = 7/300 (2%)

Query  12   DVSLIDGQEIET------TLNNTAALNVDILLLGETGTGKDTLAQRIHRLSGRRGNFVAV  65
            ++SL + Q I+        ++  A+L++D++L GETGTGKDTLA++IH+LSG RG++VAV
Sbjct  19   HISLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAV  78

Query  66   NCAAIPESLAESQLFGVNSGAYTGAVQSRAGFVEAAHLGTLYLDEIDSMPLSLQAKLLRV  125
            NCAAIPE+LAES+LFG+N+GAYTGA Q+RAG+VEAA+ G L+LDEIDSMPLSLQAK+LRV
Sbjct  79   NCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRV  138

Query  126  LECRGVERLGSTRFISVDMRVIASAQQSLQIMVDQGAFRRDLYFRLNVVNIELPALRDRR  185
            LE RGVERLG+TRF +V+MRVI ++Q +L  +V++G+FRRDLYFRLN V+I+L +LR R 
Sbjct  139  LENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARI  198

Query  186  ERIIPLFLQMIQEEADQFNCTPPSPSDGLLHELLCHPWLGNVRELRSAAKRFVLGLPPLS  245
            E IIP+F   IQ  A  ++C+P   ++   + LL  +W GN+REL++AA RFVLGLPPL 
Sbjct  199  EVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLD  258

Query  246  APACRQPPPQTDLKARLQQIEKALIEESMYRHQHCVDTVAIELGVAKRTLYYRMKQLNIS  305
             P C+    + +LK  +++IEK +I + + RH H +D  A ELG++ RTLY R+K LN++
Sbjct  259  LP-CHCGQERPQLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVN  317

15) PSEBR_a5366 in NC_015379


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  278 bits (1041),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 167/289 (58%), Positives = 229/289 (80%), Gaps = 2/289 (0%)

Query  19   NLEAFVQSVAPLMIDVLLRGETGTGKDTLAEKIHRMSGCSGKFVAINCAAIPETLAESQL  78
             L   +++VAPL ID++L GETGTGKDTLA KIH++SGC GK+VA+NCAAIPETLAES+L
Sbjct  33   TLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCAAIPETLAESEL  92

Query  79   FGANTGAFTGANQNRAGFVEAAHNGTLYLDEIDSMPLGLQAKLLRVLESRTVQRLGSTQS  138
            FG N GA+TGA Q RAG+VEAA+NG L+LDEIDSMPL+LQAK+LRVLE+R V+RLG+T+ 
Sbjct  93   FGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRF  152

Query  139  IPVNMRVIASAQCPLGEMVERGEFRRDLYFRLNIISLKLPPLRSRKERIVPLFQSLVRRE  198
             PVNMRVI ++Q PL  +VERG FRRDLYFRLN +S++L PLR+R E I+P+F+S++++ 
Sbjct  153  TPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKA  212

Query  199  AQALDRPYVAPSPALLRQLLGYAWPGNIRELQSAAKRYVLGLPALPRAEQLEHNSSTLKL  258
            A +L+ +    +      LL+Y+WPGNIREL++AA R+VLGLP+L  + +  ++ +  +L
Sbjct  213  ASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERP--QL  270

Query  259  KEHLQQFEKILIEDCMRRHHHCIDKVIAELGIARRTLYYRMKCLQISTS  307
            KE ++++EK +I DC+ RH H ID    ELGI+ RTLY R+K L+++T+
Sbjct  271  KELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVNTG  319

16) hrpS in NC_016830


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  275 bits (1030),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 166/289 (58%), Positives = 229/289 (80%), Gaps = 2/289 (0%)

Query  19   NLEAFVQCVAPLMIDVLLRGETGTGKDTLAEKIHRMSGCSGKFVAINCAAIPETLAESQL  78
             L   ++ VAPL ID++L GETGTGKDTLA KIH++SGC GK+VA+NCAAIPETLAES+L
Sbjct  33   TLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCAAIPETLAESEL  92

Query  79   FGANTGAFTGASQNRAGFVEAAHNGTLYLDEIDSMPLGLQAKLLRVLESRTVQRLGSTQN  138
            FG N GA+TGA+Q RAG+VEAA+NG L+LDEIDSMPL+LQAK+LRVLE+R V+RLG+T+ 
Sbjct  93   FGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRF  152

Query  139  IPVNMRVIASAQCPLGEMVERGEFRRDLYFRLNIISLKLPPLRSRKERIVPLFQSLVRRE  198
             PVNMRVI ++Q PL  +VERG FRRDLYFRLN +S++L PLR+R E I+P+F+S++++ 
Sbjct  153  TPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKA  212

Query  199  AQALDRPYVAPSPALLRQLIGYAWPGNIRELQSAAKRYVLGLPALPRAEQLEHNSSTLKL  258
            A +L+ +    +      L++Y+WPGNIREL++AA R+VLGLP+L  + +  ++ +  +L
Sbjct  213  ASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERP--QL  270

Query  259  KEHLQQFEKILIEDCMRRHHHCIDKVIAELGIARRTLYYRMKCLQISTS  307
            KE ++++EK +I DC+ RH H ID    ELGI+ RTLY R+K L+++T+
Sbjct  271  KELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVNTG  319

17) D781_3924 in NC_020064


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  271 bits (1012),  Expect = 4e-74, Method: Compositional matrix adjust.
 Identities = 175/289 (61%), Positives = 228/289 (79%), Gaps = 8/289 (2%)

Query  41   LHKLTKIVAPLHVDVLLEGETGTGKDTLARRIYELSGGNGPFVPVNCGAIPESLAESELF  100
            L  + K VAPL +D++LEGETGTGKDTLAR+I +LSG  G +V+VNC+AIPE+LAESELF
Sbjct  34   LAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCAAIPETLAESELF  93

Query  101  GVEAGAYTGASHARAGYLETANNGILFLDEIDSMPLTVQAKLLRVLETRTITRLGSTKPI  160
            G++ GAYTGA++ARAGY+E+A+NGILFLDEIDSMPL++QAK+LRVLE R + RLG+T+  
Sbjct  94   GINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFT  153

Query  161  SLHLRVIVAAQTPLEQLVEAGRFRRDLCFRLNTIKLETPTLRSRPELIIPLFRRFAIESA  220
            ++++RVIVA+QTPL  LVE G FRRDL FRLNT+ ++   LR+R E+IIP+FR F   +A
Sbjct  154  PVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAA  213

Query  221  LRLGMPHPPRSTALD--EALLLHCWPGNLRELKAAAERFILGLPPLNQALPQESGA--VL  276
              L    +PR  + +  E LL   WPGN+RELKAAAERF+LGLPPL+  LP + G     
Sbjct  214  STL--QCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLD--LPCHCGQERPQ  269

Query  277  LKERLKRIERSLIHDCLhrhdhriddvvhELGIPRRTLYHRLKQLNIHA  325
            LKE ++RIE+++I DCL RH+H IDD  +ELGIP RTLYHR+K LN+++
Sbjct  270  LKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVNT  318

18) rspR in NC_012660


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  266 bits (994),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 161/300 (54%), Positives = 229/300 (77%), Gaps = 3/300 (1%)

Query  6    TMDNEADISLLEGPDIEEILSGTAQLNIDILLLGETGTGKDTLAQRIHRLSGRRGSFIAV  65
            ++ +E  I + +   + E++   A L+ID++L GETGTGKDTLA++IH+LSG RG ++AV
Sbjct  21   SLTEEQPIDIHDT--LAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAV  78

Query  66   NCAAIPETLAESQLFGVNSGAYTGAVQSRAGFIEAAHLGTLYLDEIDSMPLSLQAKLLRT  125
            NCAAIPETLAES+LFG+N+GAYTGA Q+RAG++EAA+ G L+LDEIDSMPLSLQAK+LR 
Sbjct  79   NCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRV  138

Query  126  LESRGVERLGSTRFIPVDMRVIASAQQSLYEMVERGTFRRDLYFRLSVVNIQLPSLRECR  185
            LE+RGVERLG+TRF PV+MRVI ++Q +L  +VERG+FRRDLYFRL+ V+IQL +LR   
Sbjct  139  LENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARI  198

Query  186  DRIIPLFLTMIRQEAESFKCPYpqppssllqqllCHPWPGNVRELSSTAKRFVLGLPPLS  245
            + IIP+F + I++ A +++C+  +      + LL  +WPGN+REL ++A RFVLGLPPL 
Sbjct  199  EVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLD  258

Query  246  VRGKNPKISEASLKERLQRIEKSLIEESLHRHNGNVDLAAADLRVAKRTFYYRMKQLGID  305
            +     +   + LKE ++RIEK++I + L RH  ++D AA +L ++ RT+Y R+K L ++
Sbjct  259  LPCHCGQ-ERPQLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVN  317

19) Pmen_0033 in NC_009439


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  266 bits (993),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 152/283 (54%), Positives = 215/283 (76%), Gaps = 6/283 (2%)

Query  27   SAGHFRMDLLLCGETGTGKDVLARHIHDLSGRTGAFVGINCAAIPEALAESQLFGVASGA  86
            + + +++DL+L GETGTGKD LAR IH+LSG  G +V++NCAAIPE+LAES+LFG+ +GA
Sbjct  40   TVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCAAIPETLAESELFGINNGA  99

Query  87   FTGANRSRQGYIEASNDGTLYLDEIDSMPLQLQAKLLRVLETRGVERLGTTKFIPLNLRI  146
            +TGA ++R GY+EA+++G L+LDEIDSMPL LQAK+LRVLE RGVERLG T+F P+N+R+
Sbjct  100  YTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPVNMRV  159

Query  147  IASTQRPLEELVEQGLFRRDLLFRLNAMTLSLPPLRQRRELILPLFKRFTRSLGAKQANG  206
            I +TQ PL  LVE+G FRRDL FRLN++++ L PLR R E+I+P+F+ F +  ++    +
Sbjct  160  IVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAASTLQCA  219

Query  207  AQALDSQLIQLLLSHPWPGNIRELKSAAKRYVIGLPPIDAGVLADLEDGDFPHDRGLKKR  266
            ++ +  +  + LLS +WPGNIRELK+AA R+V+GLPP+D     + E  +      LK  
Sbjct  220  PREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERPQ------LKEL  273

Query  267  MRAVEKMLIQDALKRHKNGLEAVAEELGISRRTLYQRIKELDV  309
            MR +EK +I D L RH ++++  A+ELGI+ RTLY+RIK L+V
Sbjct  274  MRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNV  316

20) hrpR in NC_005773


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  257 bits (962),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 156/284 (55%), Positives = 212/284 (75%), Gaps = 1/284 (0%)

Query  23   QIVMNSAFLDMDLLLCGETGTGKDTLANRIHELSSRSGPFVGMNCAAIPESLAESQLFGV  82
            +++   A L +DL+L GETGTGKDTLA +IH+LS+  G +V++NCAAIPE+LAES+LFG+
Sbjct  36   EMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCAAIPETLAESELFGI  95

Query  83   VNGAFTGVCRAREGYIEASSGGTLYLDEIDSMPLSLQAKLLRVLESRGVERLGSTEFIPL  142
             NGA+TG  +AR GY+EA+  G L+LDEIDSMPLSLQAK+LRVLE+RGVERLG+T F P+
Sbjct  96   NNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPV  155

Query  143  DLRVIASAQRPLDELVEQGLFRRDLFFRLNVLTLHLPALRKRREQILPLFDQFTQEIAAE  202
            ++RVI ++Q PL  LVE+G FRRDL+FRLN ++++L +LR R E I+P+F  F Q  A+ 
Sbjct  156  NMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAAST  215

Query  203  FQRPVPVLDNGRVQILLSHDWPGNVRELKSAAKRFVLGFPLLGAEPMDARDPVTGLRMQM  262
            +Q +   + + + + LLS  WPGN+RELK+AA RFVLG+P L+  P +  +    L+  M
Sbjct  216  LQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDL-PCHCGQERPQLKELM  274

Query  263  RVIEKMLIQDALKRHRHNVDAVLQELELPRRTLYHRMKELGVAA  306
            R IEK +I D L RH H++D   QEL +P RTLYHR+K L V +
Sbjct  275  RRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVNT  318

21) hrpR in NC_004578


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  255 bits (952),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 154/276 (56%), Positives = 207/276 (75%), Gaps = 1/276 (0%)

Query  31   LDMDLLLCGETGTGKDTLANRIHELSSRSGPFVGMNCAAIPESLAESQLFGVVNGAFTGV  90
            L +DL+L GETGTGKDTLA +IH+LS+  G +V++NCAAIPE+LAES+LFG+ NGA+TG 
Sbjct  44   LKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCAAIPETLAESELFGINNGAYTGA  103

Query  91   CRAREGYIEASSGGTLYLDEIDSMPLSLQAKLLRVLESRGIERLGSTEFIPVDLRIIASA  150
             +AR GY+EA+  G L+LDEIDSMPLSLQAK+LRVLE+RG+ERLG+T F PV++R+I ++
Sbjct  104  GQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPVNMRVIVAT  163

Query  151  QRPLDELVEQGLFRRDLFFRLNVLTLHLPALRKRREQILPLFDQFTQGIAAEFGRPAPAL  210
            Q PL  LVE+G FRRDL+FRLN ++++L +LR R E I+P+F  F Q  A+ +  ++  +
Sbjct  164  QTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAASTLQCAPREI  223

Query  211  DSGRVQLLLSHDWPGNIRELKSAAKRFVLGFPLLGADPVEALDPATGLRTQMRIIEKMLI  270
               + + LLS  WPGNIRELK+AA RFVLG+P L+  P +  +    L+  MR IEK +I
Sbjct  224  TQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDL-PCHCGQERPQLKELMRRIEKNVI  282

Query  271  QDALKRHRHNFDAVLQELELPRRTLYHRMKELGVAA  306
             D L RH H++D   QEL +P RTLYHR+K L V +
Sbjct  283  YDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVNT  318

22) HrpR in NC_007005


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  254 bits (950),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 154/284 (55%), Positives = 209/284 (74%), Gaps = 1/284 (0%)

Query  23   QIVMNSVLMDMDLLLCGETGTGKDTLASRIHELSSRTGPFVGMNCAAIPESLAESQLFGV  82
            +++     + +DL+L GETGTGKDTLA +IH+LS+  G +V++NCAAIPE+LAES+LFG+
Sbjct  36   EMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCAAIPETLAESELFGI  95

Query  83   VNGAFTGVCRAREGYIEASSGGTLYLDEIDSMPLSLQAKLLRVLESRGVERLGSTDFIPL  142
             NGA+TG  +AR GY+EA+  G L+LDEIDSMPLSLQAK+LRVLE+RGVERLG+T F P+
Sbjct  96   NNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPV  155

Query  143  DLRVIASAQRPLDELVEQGLFRRDLFFRLNVLTLQLPALRKRREQILPLFDQFTQDVAAE  202
            ++RVI ++Q PL  LVE+G FRRDL+FRLN +++QL +LR R E I+P+F  F Q  A+ 
Sbjct  156  NMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAAST  215

Query  203  SGRSVPTLDNRRVQILLSHDWPGNVRELKSAAKRFVLGLPLLGAEPVEARDPVTGLRMQM  262
               +   + + + + LLS  WPGN+RELK+AA RFVLGLP L+  P +  +    L+  M
Sbjct  216  LQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDL-PCHCGQERPQLKELM  274

Query  263  RVIEKMLIQDALKRHRHNFDAVLEELELPRRTLYHRMKELGVAS  306
            R IEK +I D L RH H++D   +EL +P RTLYHR+K L V +
Sbjct  275  RRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVNT  318

23) hrpS in NC_004578


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  249 bits (928),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 152/286 (54%), Positives = 213/286 (75%), Gaps = 3/286 (1%)

Query  18   NLGIVAESISQLGIDVLLSGETGTGKDTIARRIHEMSGRKGRLVAMNCAAIPESLAESEL  77
             L+ +  +++ L ID++L GETGTGKDT+AR+IH++SG +G+LVA+NCAAIPE+LAESEL
Sbjct  33   TLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCAAIPETLAESEL  92

Query  78   FGVVSGAYTGADRSRVGYVEAAQGGTLYLDEIDSMPLSLQAKLLRVLETRALERLGSTST  137
            FG+ +GAYTGA+++R GYVEAA+ G L+LDEIDSMPLSLQAK+LRVLE R++ERLG+T  
Sbjct  93   FGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRF  152

Query  138  IKLDICVIASAQCSLDDAVERGQFRRDLYFRLNVLTLKLPPLRNQSDRIVPLFTRFTAAA  197
              +++ VI ++Q +L   VERG FRRDLYFRLN ++++L PLR + + I+P+F  F   A
Sbjct  153  TPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKA  212

Query  198  ARELGVPVPDVCPLLHKVLLGHDWPGNIRELKAAAKRHVLGFPLLGAEPQ-GEEHLACGL  256
            A  L  +  ++       LL+  WPGNIRELKAAA R VLG+P L+   + G+E+    L
Sbjct  213  ASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERPQ--L  270

Query  257  KSQLRVIEKALIQESLKRHDNCVDSVSLELDVPRRTLYRRIKELQI  302
            K  +R IEK +I + L RH++ +D  + EL++P RTLY+RIK L++
Sbjct  271  KELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNV  316

24) hrpS in NC_005773


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  238 bits (887),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 152/285 (54%), Positives = 219/285 (77%), Gaps = 1/285 (0%)

Query  18   NLGIVAESISQLGIDVLLSGETGTGKDTIAQRIHTISGRKGRLVAMNCAAIPESLAESEL  77
             L+ +  +++ L ID++L GETGTGKDT+A++IH +SG +G+LVA+NCAAIPE+LAESEL
Sbjct  33   TLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCAAIPETLAESEL  92

Query  78   FGVVSGAYTGADRSRVGYIEAAQGGTLYLDEIDSMPLSLQAKLLRVLETRALERLGSTST  137
            FG+ +GAYTGA+++R GY+EAA+ G L+LDEIDSMPLSLQAK+LRVLE R++ERLG+T  
Sbjct  93   FGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRF  152

Query  138  IKLDVCVIASAQSSLDDAVEQGKFRRDLYFRLNVltlqlpplrtqpERILPLFKRFMAAA  197
              +++ VI ++Q++L   VE+G FRRDLYFRLN +++QL PLR++ E I+P+F+ F+  A
Sbjct  153  TPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKA  212

Query  198  AKELNVASADVCPLLQQVLLGHEWPGNIRELKAAAKRHVLGFPVLGVDPQSEEHLACGLK  257
            A  L+ A+ ++     + LL+  WPGNIRELKAAA R VLG+P L++  +  ++ +  LK
Sbjct  213  ASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERP-QLK  271

Query  258  SQLRAIEKALIQQSLKRHRNCIDAASLELDMPRRTLYRRIKELQI  302
              +R IEK +I + L RH + ID A+ EL++P RTLY+RIK L++
Sbjct  272  ELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNV  316

25) HrpS in NC_007005


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  236 bits (882),  Expect = 7e-64, Method: Compositional matrix adjust.
 Identities = 147/285 (52%), Positives = 212/285 (75%), Gaps = 1/285 (0%)

Query  18   NLGIVAESISQLGIDVLLSGETGTGKDTIARRIHNMSGRQGRFVPMNCAAIPESLAESEL  77
             L+ +  +++ L ID++L GETGTGKDT+AR+IH++SG +G++V++NCAAIPE+LAESEL
Sbjct  33   TLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCAAIPETLAESEL  92

Query  78   FGVVSGAYTGADRSRMGYIEAAQGGTLYLDEIDSMPLALQAKLLRVLETRALERLGSTST  137
            FG+ +GAYTGA+++R GY+EAA+ G L+LDEIDSMPL+LQAK+LRVLE R++ERLG+T  
Sbjct  93   FGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRF  152

Query  138  INLDICVIASAQACLDDAVEEGKFRRDLYFRLNVLTLKLPPLRDQPERILPLFTRFVAAS  197
              +++ VI ++Q+ L   VE G FRRDLYFRLN ++++L PLR + E I+P+F  F+  +
Sbjct  153  TPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKA  212

Query  198  AKELSVPIPDVCPLLQQVLTGHHWPGNIRELKAAAKRHVLGFPLLGADSQTEEHLACGLK  257
            A  L  +  ++     + L +  WPGNIRELKAAA R VLG+P L+   +  ++ +  LK
Sbjct  213  ASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERP-QLK  271

Query  258  FQLRAIEKALIQQALKRHRNCIDAASLELDIPRRTLYRRIKELSI  302
              +R IEK +I + L RH + ID A+ EL+IP RTLY+RIK L++
Sbjct  272  ELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNV  316

26) Pmen_0032 in NC_009439


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  234 bits (874),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 149/288 (52%), Positives = 209/288 (73%), Gaps = 9/288 (3%)

Query  19   NLEVVASSISELNIDVLLTGETGSGKDTLAQYLHKLSGRKGPFVAMNCAAIPESLFESEL  78
             L  +  +++ L+ID++L GETG+GKDTLA+ +H+LSG +G +VA+NCAAIPE+L ESEL
Sbjct  33   TLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCAAIPETLAESEL  92

Query  79   FGVTSGAYTGADHSRMGYVEAAQGGTLYLDEIDSMPAFLQAKLLRVLETRQIERLGSTTP  138
            FG+ +GAYTGA+++R GYVEAA+ G L+LDEIDSMP  LQAK+LRVLE R +ERLG+T  
Sbjct  93   FGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRF  152

Query  139  VPLDICVVASAQRSLDALVEQGEFRRDLYFRLNVLTLRLPALRQKREWIIPMFERFAFEA  198
             P+++ V+ ++Q +L +LVE+G FRRDLYFRLN ++++L +LR + E IIPMF  F   A
Sbjct  153  TPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKA  212

Query  199  SQDMDTALPVIDPAIEHVLLNHDWPGNLRELKSAAKRHVLGINLLGIEAEQPIEC-----  253
            +  ++ A   I     + LL+  WPGN+RELK+AA R VLG+  L++    P +C     
Sbjct  213  ASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDL----PCHCGQERP  268

Query  254  DLKCQLRLIEKVLIQESLQRHEHCIEAVLHELDIPRRTLYHRMKELDV  301
            +LK  +R IEK +I + L RH H I+   +EL+IP RTLYHR+K L+V
Sbjct  269  QLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNV  316

27) H045_00470 in NC_020209


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  213 bits (793),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 135/240 (57%), Positives = 186/240 (78%), Gaps = 1/240 (0%)

Query  1    MNCAAIPESLAESQLFGVNSGAFTGAMQSRAGFVEAAHLGTLYLDEIDSMPLSLQAKLLR  60
            +NCAAIPE+LAES+LFG+N+GA+TGA Q+RAG+VEAA+ G L+LDEIDSMPLSLQAK+LR
Sbjct  78   VNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLR  137

Query  61   VLESRGVERLGSTRFIPVDMRVIASAQHSLHAMVEQGTFRRDLFFRLNVVTIQLPALRDQ  120
            VLE+RGVERLG+TRF PV+MRVI ++Q +L ++VE+G+FRRDL+FRLN V+IQL +LR +
Sbjct  138  VLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRAR  197

Query  121  RERIVPLFLQMVRQEAELFECPAPTPTAELLQQLLCQSWLGNIRELRSTAKRFVlglppl  180
             E I+P+F   +++ A  ++C++   T E  + LL  SW GNIREL+++A RFVLGLPPL
Sbjct  198  IEVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPL  257

Query  181  spplsKPQGNEMSLKARLQEIEKALIEESMQRNDRCVDRVAIEMGIAKRTLYHRMKQLAI  240
              P    Q     LK  ++ IEK +I + + R+++ +D  A E+GI+ RTLYHR+K L +
Sbjct  258  DLPCHCGQERP-QLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNV  316

28) PADK2_13500 in NC_018080


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  177 bits (654),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 116/282 (42%), Positives = 185/282 (66%), Gaps = 16/282 (5%)

Query  37   QALLEHLRQVAPSEASVLVIGETGTGKELVARHIHNLSARRTGPFVAVNCGAFSESLVEA  96
            ++L E ++ VAP    +++ GETGTGK+ +AR IH+LS+ R G +VAVNC+A++E+L E+
Sbjct  32   DTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCR-GKLVAVNCAAIPETLAES  90

Query  97   ELFGHEKGAFTGALAAKAGWFEEANGGTLFLDEIGDLPMPIQVKLLRVLQEREVVRLGSR  156
            ELFG ++GA+TGA  A+AG  E A+ G LFLDEI+ +P+++Q K+LRVL++R V RLG+ 
Sbjct  91   ELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGT  150

Query  157  KSIPIDVRVLAATNVQLERAINAGHFREDLYYRLNVVSLELSPLRERPGDILPLTRHFIA  216
            +  P+++RV+ AT+  L   ++ G FR DLY+RLN VS++L PLR R   I+P+ R FI 
Sbjct  151  RFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQ  210

Query  217  EYSRRLGYGQSQLSPEAAQKLRAYSWPGNIRELENVIHHTL-------LICRDGLIRADD  269
              +  L  +  +++ E  + L +YSWPGNIREL    ++ +       L C+ G  R+  
Sbjct  211  KAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERP--  268

Query  270  LHLSNL--RLERG---EELARGGPANGAAEHLLQQAFQRLFE  306
             +L +L  R+E+    + L R G + + A + L  +++ L++
Sbjct  269  -QLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYH  309

29) G655_13280 in NC_020912


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  177 bits (655),  Expect = 8e-46, Method: Compositional matrix adjust.
 Identities = 116/282 (42%), Positives = 185/282 (66%), Gaps = 16/282 (5%)

Query  37   QALLEHLRQVAPSEASVLVIGETGTGKELVARHIHNLSARRNGPFVAVNCGAFSESLVEA  96
            ++L E ++ VAP    +++ GETGTGK+ +AR IH+LS+ R G +VAVNC+A++E+L E+
Sbjct  32   DTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCR-GKLVAVNCAAIPETLAES  90

Query  97   ELFGHEKGAFTGALAAKAGWFEEANGGTLFLDEIGDLPMPIQVKLLRVLQEREVVRLGSR  156
            ELFG ++GA+TGA  A+AG  E A+ G LFLDEI+ +P+++Q K+LRVL++R V RLG+ 
Sbjct  91   ELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGT  150

Query  157  KSIPIDVRVLAATNVQLERAINAGHFREDLYYRLNVVSLELSPLRERPGDILPLTRHFIA  216
            +  P+++RV+ AT+  L   ++ G FR DLY+RLN VS++L PLR R   I+P+ R FI 
Sbjct  151  RFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQ  210

Query  217  EYSRRLGYGQSQLSPEAAQKLRAYSWPGNIRELENVIHHTL-------LICRDGLIRADD  269
              +  L  +  +++ E  + L +YSWPGNIREL    ++ +       L C+ G  R+  
Sbjct  211  KAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERP--  268

Query  270  LHLSNL--RLERG---EELARGGPASGAAEHLLQQAFQRLFE  306
             +L +L  R+E+    + L R G + + A + L  +++ L++
Sbjct  269  -QLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYH  309

30) PLES_29491 in NC_011770


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  177 bits (655),  Expect = 9e-46, Method: Compositional matrix adjust.
 Identities = 116/282 (42%), Positives = 185/282 (66%), Gaps = 16/282 (5%)

Query  37   QALLEHLRQVAPSEASVLVIGETGTGKELVARHIHNLSARRNGPFVAVNCGAFSESLVEA  96
            ++L E ++ VAP    +++ GETGTGK+ +AR IH+LS+ R G +VAVNC+A++E+L E+
Sbjct  32   DTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCR-GKLVAVNCAAIPETLAES  90

Query  97   ELFGHEKGAFTGALAAKAGWFEEANGGTLFLDEIGDLPMPIQVKLLRVLQEREVVRLGSR  156
            ELFG ++GA+TGA  A+AG  E A+ G LFLDEI+ +P+++Q K+LRVL++R V RLG+ 
Sbjct  91   ELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGT  150

Query  157  KSIPIDVRVLAATNVQLERAINAGHFREDLYYRLNVVSLELSPLRERPGDILPLTRHFIA  216
            +  P+++RV+ AT+  L   ++ G FR DLY+RLN VS++L PLR R   I+P+ R FI 
Sbjct  151  RFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQ  210

Query  217  EYSRRLGYGQSQLSPEAAQKLRAYSWPGNIRELENVIHHTL-------LICRDGLIRADD  269
              +  L  +  +++ E  + L +YSWPGNIREL    ++ +       L C+ G  R+  
Sbjct  211  KAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERP--  268

Query  270  LHLSNL--RLERG---EELARGGPASGAAEHLLQQAFQRLFE  306
             +L +L  R+E+    + L R G + + A + L  +++ L++
Sbjct  269  -QLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYH  309

31) PAM18_2687 in NC_017548


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  177 bits (655),  Expect = 9e-46, Method: Compositional matrix adjust.
 Identities = 116/282 (42%), Positives = 185/282 (66%), Gaps = 16/282 (5%)

Query  37   QALLEHLRQVAPSEASVLVIGETGTGKELVARHIHNLSARRNGPFVAVNCGAFSESLVEA  96
            ++L E ++ VAP    +++ GETGTGK+ +AR IH+LS+ R G +VAVNC+A++E+L E+
Sbjct  32   DTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCR-GKLVAVNCAAIPETLAES  90

Query  97   ELFGHEKGAFTGALAAKAGWFEEANGGTLFLDEIGDLPMPIQVKLLRVLQEREVVRLGSR  156
            ELFG ++GA+TGA  A+AG  E A+ G LFLDEI+ +P+++Q K+LRVL++R V RLG+ 
Sbjct  91   ELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGT  150

Query  157  KSIPIDVRVLAATNVQLERAINAGHFREDLYYRLNVVSLELSPLRERPGDILPLTRHFIA  216
            +  P+++RV+ AT+  L   ++ G FR DLY+RLN VS++L PLR R   I+P+ R FI 
Sbjct  151  RFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQ  210

Query  217  EYSRRLGYGQSQLSPEAAQKLRAYSWPGNIRELENVIHHTL-------LICRDGLIRADD  269
              +  L  +  +++ E  + L +YSWPGNIREL    ++ +       L C+ G  R+  
Sbjct  211  KAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERP--  268

Query  270  LHLSNL--RLERG---EELARGGPASGAAEHLLQQAFQRLFE  306
             +L +L  R+E+    + L R G + + A + L  +++ L++
Sbjct  269  -QLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYH  309

32) PA2354 in NC_002516


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  177 bits (655),  Expect = 9e-46, Method: Compositional matrix adjust.
 Identities = 116/282 (42%), Positives = 185/282 (66%), Gaps = 16/282 (5%)

Query  37   QALLEHLRQVAPSEASVLVIGETGTGKELVARHIHNLSARRTGPFVAVNCGAFSESLVEA  96
            ++L E ++ VAP    +++ GETGTGK+ +AR IH+LS+ R G +VAVNC+A++E+L E+
Sbjct  32   DTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCR-GKLVAVNCAAIPETLAES  90

Query  97   ELFGHEKGAFTGALAAKAGWFEEANGGTLFLDEIGDLPMPIQVKLLRVLQEREVVRLGSR  156
            ELFG ++GA+TGA  A+AG  E A+ G LFLDEI+ +P+++Q K+LRVL++R V RLG+ 
Sbjct  91   ELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGT  150

Query  157  KSIPIDVRVLAATNVQLERAINAGHFREDLYYRLNVVSLELSPLRERPGDILPLTRHFIA  216
            +  P+++RV+ AT+  L   ++ G FR DLY+RLN VS++L PLR R   I+P+ R FI 
Sbjct  151  RFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQ  210

Query  217  EYSRRLGYGQSQLSPEAAQKLRAYSWPGNIRELENVIHHTL-------LICRDGLIRADD  269
              +  L  +  +++ E  + L +YSWPGNIREL    ++ +       L C+ G  R+  
Sbjct  211  KAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERP--  268

Query  270  LHLSNL--RLERG---EELARGGPASGAAEHLLQQAFQRLFE  306
             +L +L  R+E+    + L R G + + A + L  +++ L++
Sbjct  269  -QLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYH  309

33) M062_12275 in NC_021577


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  177 bits (655),  Expect = 9e-46, Method: Compositional matrix adjust.
 Identities = 116/282 (42%), Positives = 185/282 (66%), Gaps = 16/282 (5%)

Query  37   QALLEHLRQVAPSEASVLVIGETGTGKELVARHIHNLSARRNGPFVAVNCGAFSESLVEA  96
            ++L E ++ VAP    +++ GETGTGK+ +AR IH+LS+ R G +VAVNC+A++E+L E+
Sbjct  32   DTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCR-GKLVAVNCAAIPETLAES  90

Query  97   ELFGHEKGAFTGALAAKAGWFEEANGGTLFLDEIGDLPMPIQVKLLRVLQEREVVRLGSR  156
            ELFG ++GA+TGA  A+AG  E A+ G LFLDEI+ +P+++Q K+LRVL++R V RLG+ 
Sbjct  91   ELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGT  150

Query  157  KSIPIDVRVLAATNVQLERAINAGHFREDLYYRLNVVSLELSPLRERPGDILPLTRHFIA  216
            +  P+++RV+ AT+  L   ++ G FR DLY+RLN VS++L PLR R   I+P+ R FI 
Sbjct  151  RFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQ  210

Query  217  EYSRRLGYGQSQLSPEAAQKLRAYSWPGNIRELENVIHHTL-------LICRDGLIRADD  269
              +  L  +  +++ E  + L +YSWPGNIREL    ++ +       L C+ G  R+  
Sbjct  211  KAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERP--  268

Query  270  LHLSNL--RLERG---EELARGGPASGAAEHLLQQAFQRLFE  306
             +L +L  R+E+    + L R G + + A + L  +++ L++
Sbjct  269  -QLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYH  309

34) lafK in NC_017626


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  160 bits (590),  Expect = 9e-41, Method: Compositional matrix adjust.
 Identities = 103/245 (43%), Positives = 163/245 (67%), Gaps = 14/245 (5%)

Query  17   LAKRVAAFNVPVLIQGETGAGKECVAKYIHSVAFGENAPYIGVNCAAIPENMLEATLFGY  76
            + K VA++++ ++++GETG+GK+ +A+ IH ++ G  +  ++VNCAAIPE + E+ LFG 
Sbjct  37   MIKTVAPLKIDLVLEGETGTGKDTLARKIHQLS-GCRGKLVAVNCAAIPETLAESELFGI  95

Query  77   DKGAFTGAIASVPGKMELANNGTLLLDEIGDMPLALQAKILRVLQEQQVERLGSNRQIKL  136
            ++GA+TGA  + +G +E A+NG L+LDEI+ MPL+LQAK+LRVL+++ VERLG+ R   +
Sbjct  96   NNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPV  155

Query  137  NFRLIACTNKNLEQEVAAGRFREDLYYRLAVIPITMPPLRERLNDIIPLAESFIKKYSTV  196
            N R+I  T+  L   V  G FR DLY+RL  ++I + PLR R++ IIP+  SFI+K ++ 
Sbjct  156  NMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAAST  215

Query  197  L-VKNITLSESTRRALLNYRWPGNVRQLENAIQRGMILNRDGVIFPDALGLPEIDVADHS  255
            L      +++     LL+Y WPGN+R+L  A +R          F   LGLP +D++ H 
Sbjct  216  LQCAPREITQEHYECLLSYSWPGNIRELKAAAER----------F--VLGLPPLDLPCHC  263

Query  256  ELQWP  260
              ++P
Sbjct  264  GQERP  268

35) lafK in NC_011751


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  160 bits (590),  Expect = 9e-41, Method: Compositional matrix adjust.
 Identities = 103/245 (43%), Positives = 163/245 (67%), Gaps = 14/245 (5%)

Query  17   LAKRVAAFNVPVLIQGETGAGKECVAKYIHSVAFGENAPYIGVNCAAIPENMLEATLFGY  76
            + K VA++++ ++++GETG+GK+ +A+ IH ++ G  +  ++VNCAAIPE + E+ LFG 
Sbjct  37   MIKTVAPLKIDLVLEGETGTGKDTLARKIHQLS-GCRGKLVAVNCAAIPETLAESELFGI  95

Query  77   DKGAFTGAIASVPGKMELANNGTLLLDEIGDMPLALQAKILRVLQEQQVERLGSNRQIKL  136
            ++GA+TGA  + +G +E A+NG L+LDEI+ MPL+LQAK+LRVL+++ VERLG+ R   +
Sbjct  96   NNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPV  155

Query  137  NFRLIACTNKNLEQEVAAGRFREDLYYRLAVIPITMPPLRERLNDIIPLAESFIKKYSTV  196
            N R+I  T+  L   V  G FR DLY+RL  ++I + PLR R++ IIP+  SFI+K ++ 
Sbjct  156  NMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAAST  215

Query  197  L-VKNITLSESTRRALLNYRWPGNVRQLENAIQRGMILNRDGVIFPDALGLPEIDVADHS  255
            L      +++     LL+Y WPGN+R+L  A +R          F   LGLP +D++ H 
Sbjct  216  LQCAPREITQEHYECLLSYSWPGNIRELKAAAER----------F--VLGLPPLDLPCHC  263

Query  256  ELQWP  260
              ++P
Sbjct  264  GQERP  268

36) BN4_10776 in NC_020409


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  159 bits (588),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 97/237 (41%), Positives = 157/237 (67%), Gaps = 4/237 (1%)

Query  1    MALNLDGIIGDSSALADVFKVLGKVAPTDSTVLVSGESGTGKELLVRALHHNSERRDGAF  60
            ++L  +  I+   +LA+++K    VAP    +++ GE+GTGK+ L R +H+ S  R G +
Sbjct  20   ISLTEEQPIDIHDTLAEMIK---TVAPLKIDLVLEGETGTGKDTLARKIHQLSGCR-GKL  75

Query  61   VPINCGAIPKELLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLSLQVKI  120
            V++NC+AIP  L ESELFG ++GA+T A ++R+G  E AD G +FLDEI+ M LSLQ K+
Sbjct  76   VAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKM  135

Query  121  LRALQEKEIERVGGITIKKVDVRVVAATNRDLESEVKAGRFREDLYYRLNVIPLHLPPLR  180
            LR L+++ +ER+GG  +  V++RV+ AT+  L + V  G FR DLY+RLN ++++L PLR
Sbjct  136  LRVLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLR  195

Query  181  ERGNDILLLADHFLKEQSKAKARKRMRLSEQAAEIILTYSWPGNVRELENFMERLAI  237
             R + I+ +   F++  + +       ++++  E +L+YSWPGN+REL    ER+ +
Sbjct  196  ARIEVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVL  252

37) Nhal_2343 in NC_013960


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  158 bits (584),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 118/279 (43%), Positives = 178/279 (64%), Gaps = 13/279 (4%)

Query  48   VLISGESGTGKEVLAHYIHRHSRCCEGPFVAINCAAIPENMLEATLFGYEKGAFTGAHQT  107
            +++ GE+GTGK+ LA+ IH+ S C  G +VA+NCAAIPE + E+ LFG ++GA+TGA Q+
Sbjct  48   LVLEGETGTGKDTLARKIHQLSGC-RGKLVAVNCAAIPETLAESELFGINNGAYTGAGQA  106

Query  108  RPGKFEQAQGGTLLLDEISEMDLDLQAKLLRVLQEREVERLGGCKVIPLDVRILATTNQD  167
            R+G  E A+ G L+LDEI  M L LQAK+LRVL++R VERLGG +  P+++R++ +T+  
Sbjct  107  RAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPVNMRVIVATQTP  166

Query  168  LREQIGNGQFREDLYYRLNVFPLQLPPLRERTQDIlplarrltasraaaVGRLPPRLTLA  227
            L   +  G FR DLY+RLN  ++QL PLR R + I+P+ R +    A+++   P  +T  
Sbjct  167  LLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAASTLQCAPREITQE  226

Query  228  AETKLLAHPWPGNIRELDNVIQRALILEEGEAITAQALAFEAGMEAPLPRGVGELSKDLK  287
                LL+ +WPGNIREL    +R ++L    ++ +  L+ + G E P      +L   ++
Sbjct  227  HYECLLSYSWPGNIRELKAAAER-FVL----GLPPLDLPCHCGQERP------QLKELMR  275

Query  288  SHEKQLILDTLARCGGRRKQAAAQLGISERTLRYKLARL  326
              EK++I D L R G    +AA +LGI+ RTL Y   +L
Sbjct  276  RIEKNVIYDCLVRHGHSIDDAAQELGIPLRTL-YHRIKL  313

38) ECNA114_0217 in NC_017644


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  155 bits (573),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 102/247 (42%), Positives = 161/247 (66%), Gaps = 16/247 (6%)

Query  17   LAKRVAAFNVPVLIQGETGAGKECVAKYIHTVAFGENDNAPYIGVNCAAIPENMLEATLF  76
            + K VA++++ ++++GETG+GK+ +A+ IH ++      +  ++VNCAAIPE + E+ LF
Sbjct  37   MIKTVAPLKIDLVLEGETGTGKDTLARKIHQLS---GCRGKLVAVNCAAIPETLAESELF  93

Query  77   GYDKGAFTGAIASVPGKMELANNGTLLLDEIGDMPLALQAKILRVLQEQQVERLGSNRQI  136
            G ++GA+TGA  + +G +E A+NG L+LDEI+ MPL+LQAK+LRVL+++ VERLG+ R  
Sbjct  94   GINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFT  153

Query  137  KLNFRLIACTNKNLEQDVAAGRFREDLYYRLAVIPITMPPLRERLNDIIPLAESFIKKYA  196
             +N R+I  T+  L   V  G FR DLY+RL  ++I + PLR R++ IIP+  SFI+K A
Sbjct  154  PVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAA  213

Query  197  TVL-VKNITLSESTRRALLNYRWPGNVRQLENAIQRGMILNRDGVIYPDALGLPETDIAD  255
            + L      +++     LL+Y WPGN+R+L  A +R          +   LGLP  D++ 
Sbjct  214  STLQCAPREITQEHYECLLSYSWPGNIRELKAAAER----------F--VLGLPPLDLPC  261

Query  256  HSELQWP  262
            H   ++P
Sbjct  262  HCGQERP  268

39) Desac_1380 in NC_015388


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  155 bits (572),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 118/294 (41%), Positives = 175/294 (60%), Gaps = 26/294 (8%)

Query  15   MQEIFEQLALAAPTDATVLIL-GETGTGKELIARAIHHTSPRRDDPFVVVNCAAIPETLL  73
            +++ + ++  + +     L+L GETGTGK+ +AR IH+ S  R+  +V VNCAAIPETL 
Sbjct  30   IHDTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGK-LVAVNCAAIPETLA  88

Query  74   ESDLFGHERGAFTGALSRKIGRFAMAHGGTIFLDEIGELPLPIQAKILRVLQFKEVEPLG  133
            ES+LFG + GA+TGA   + G    A+ G +FLDEI+ +PL++QAK+LRVL+ + VE LG
Sbjct  89   ESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLG  148

Query  134  SNRIQKVDVRIIAATHRNLSDDVREGRFREDLYYRLNIVVLTLPPLRQRLEDIPLLAYHF  193
            + R+  V++R+I AT+  L   V  G FR DLY+RLN V + L PLR R+E I       
Sbjct  149  GTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVI----IPM  204

Query  194  FDHFVQKNNRSIH----DIDPKVLQLLRRYPWPGNIRELENVIERAVIFCTGPTLTTENL  249
            F  F+QK   +++    +I     + L  Y+WPGNIREL    ER V+           L
Sbjct  205  FRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVL----------GL  254

Query  250  PDYLQPKHTGFTPPQIIDDREPSLM-DLERELIFRTLEKMDGNRQQAAQILGIS  302
            P    P H G   PQ+ +     LM  +E+++I+  L + + + ++AAQ LGI+
Sbjct  255  PPLDLPCHCGQERPQLKE-----LMRRIEKNVIYDCLVRHGHSIDDAAQELGIP  303

40) lafK in NC_010498


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  155 bits (570),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 102/247 (42%), Positives = 161/247 (66%), Gaps = 16/247 (6%)

Query  17   LAKRVAAFNVPVLIQGETGAGKECVAKYIHTVAFGENDNAPYIGVNCAAIPENMLESTLF  76
            + K VA++++ ++++GETG+GK+ +A+ IH ++      +  ++VNCAAIPE + ES LF
Sbjct  37   MIKTVAPLKIDLVLEGETGTGKDTLARKIHQLS---GCRGKLVAVNCAAIPETLAESELF  93

Query  77   GYDKGAFTGAIASVPGKMELANNGSLLLDEIGEMPLALQAKILRVLQEQQVERLGSNRQI  136
            G ++GA+TGA  + +G +E A+NG L+LDEI+ MPL+LQAK+LRVL+++ VERLG+ R  
Sbjct  94   GINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFT  153

Query  137  KLNFRLIACTNKNLEQEVAAGRFREDLYYRLAVIPITMPPLRERLNDIIPLAESFIKKYS  196
             +N R+I  T+  L   V  G FR DLY+RL  ++I + PLR R++ IIP+  SFI+K +
Sbjct  154  PVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAA  213

Query  197  TVL-VKNITLSESTRRALLNYRWPGNVRQLENAIQRGMILNRDGVIYPDALGLPDTDIAD  255
            + L      +++     LL+Y WPGN+R+L  A +R          +   LGLP  D++ 
Sbjct  214  STLQCAPREITQEHYECLLSYSWPGNIRELKAAAER----------F--VLGLPPLDLPC  261

Query  256  HSELQWP  262
            H   ++P
Sbjct  262  HCGQERP  268

41) EcolC_3384 in NC_010468


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  155 bits (570),  Expect = 4e-39, Method: Compositional matrix adjust.
 Identities = 101/245 (42%), Positives = 164/245 (67%), Gaps = 11/245 (4%)

Query  17   LAKRVAAFNVPVLIQGETGAGKECVAKYIHTVAFGENDNAPYIGVNCAAIPENMLEATLF  76
            + K VA++++ ++++GETG+GK+ +A+ IH ++      +  ++VNCAAIPE + E+ LF
Sbjct  37   MIKTVAPLKIDLVLEGETGTGKDTLARKIHQLS---GCRGKLVAVNCAAIPETLAESELF  93

Query  77   GYDKGAFTGAIASVPGKMELANNGTLLLDEIGDMPLALQAKILRVLQEQLVERLGSNRQI  136
            G ++GA+TGA  + +G +E A+NG L+LDEI+ MPL+LQAK+LRVL+++ VERLG+ R  
Sbjct  94   GINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFT  153

Query  137  KLNFRLIACTNKNLEQEVAAGRFREDLYYRLAVIPITMPPLRERLNDIIPLAESFIKKYS  196
             +N R+I  T+  L   V  G FR DLY+RL  ++I + PLR R++ IIP+  SFI+K +
Sbjct  154  PVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAA  213

Query  197  TVL-VKNITLSESTRRALLNYRWPGNVRQLENAIQRGMILNRDGVIYLDALGLPENDIAD  255
            + L      +++     LL+Y WPGN+R+L  A +R  +L       L +L+LP +   +
Sbjct  214  STLQCAPREITQEHYECLLSYSWPGNIRELKAAAER-FVLG------LPPLDLPCHCGQE  266

Query  256  RSELQ  260
            R++L+
Sbjct  267  RPQLK  271

42) KO11_01240 in NC_017660


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  154 bits (568),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 100/247 (41%), Positives = 161/247 (66%), Gaps = 16/247 (6%)

Query  17   LAKRVAAFNVPVLIQGETGAGKECVAKYIHTVAFGENENAPYIGVNCAAIPENMLEATLF  76
            + K VA++++ ++++GETG+GK+ +A+ IH ++      +  ++VNCAAIPE + E+ LF
Sbjct  37   MIKTVAPLKIDLVLEGETGTGKDTLARKIHQLS---GCRGKLVAVNCAAIPETLAESELF  93

Query  77   GYDKGAFTGAIASVPGKMELANNGTLLLDEIGDMPLALQAKILRVLQEQQVERLGSNRQI  136
            G ++GA+TGA  + +G +E A+NG L+LDEI+ MPL+LQAK+LRVL+++ VERLG+ R  
Sbjct  94   GINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFT  153

Query  137  KLNFRLIACTNKNLEQEVAAGRFREDLYYRLAVIPITMPPLRERLNDIIPLAESFIKKYS  196
             +N R+I  T+  L   V  G FR DLY+RL  ++I + PLR R++ IIP+  SFI+K +
Sbjct  154  PVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAA  213

Query  197  TVL-VKNITLSESTRRAMLNYRWPGNVRQLENAIQRGMILNRDGVIYPDALGLPENDIAD  255
            + L      +++     +L+Y WPGN+R+L  A +R          +   LGLP  D++ 
Sbjct  214  STLQCAPREITQEHYECLLSYSWPGNIRELKAAAER----------F--VLGLPPLDLPC  261

Query  256  HSELQWP  262
            H   ++P
Sbjct  262  HCGQERP  268

43) EKO11_3664 in NC_016902


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  154 bits (568),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 100/247 (41%), Positives = 161/247 (66%), Gaps = 16/247 (6%)

Query  17   LAKRVAAFNVPVLIQGETGAGKECVAKYIHTVAFGENENAPYIGVNCAAIPENMLEATLF  76
            + K VA++++ ++++GETG+GK+ +A+ IH ++      +  ++VNCAAIPE + E+ LF
Sbjct  37   MIKTVAPLKIDLVLEGETGTGKDTLARKIHQLS---GCRGKLVAVNCAAIPETLAESELF  93

Query  77   GYDKGAFTGAIASVPGKMELANNGTLLLDEIGDMPLALQAKILRVLQEQQVERLGSNRQI  136
            G ++GA+TGA  + +G +E A+NG L+LDEI+ MPL+LQAK+LRVL+++ VERLG+ R  
Sbjct  94   GINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFT  153

Query  137  KLNFRLIACTNKNLEQEVAAGRFREDLYYRLAVIPITMPPLRERLNDIIPLAESFIKKYS  196
             +N R+I  T+  L   V  G FR DLY+RL  ++I + PLR R++ IIP+  SFI+K +
Sbjct  154  PVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAA  213

Query  197  TVL-VKNITLSESTRRAMLNYRWPGNVRQLENAIQRGMILNRDGVIYPDALGLPENDIAD  255
            + L      +++     +L+Y WPGN+R+L  A +R          +   LGLP  D++ 
Sbjct  214  STLQCAPREITQEHYECLLSYSWPGNIRELKAAAER----------F--VLGLPPLDLPC  261

Query  256  HSELQWP  262
            H   ++P
Sbjct  262  HCGQERP  268

44) pspF in NC_022364


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  154 bits (568),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 100/247 (41%), Positives = 161/247 (66%), Gaps = 16/247 (6%)

Query  17   LAKRVAAFNVPVLIQGETGAGKECVAKYIHTVAFGENENAPYIGVNCAAIPENMLEATLF  76
            + K VA++++ ++++GETG+GK+ +A+ IH ++      +  ++VNCAAIPE + E+ LF
Sbjct  37   MIKTVAPLKIDLVLEGETGTGKDTLARKIHQLS---GCRGKLVAVNCAAIPETLAESELF  93

Query  77   GYDKGAFTGAIASVPGKMELANNGTLLLDEIGDMPLALQAKILRVLQEQQVERLGSNRQI  136
            G ++GA+TGA  + +G +E A+NG L+LDEI+ MPL+LQAK+LRVL+++ VERLG+ R  
Sbjct  94   GINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFT  153

Query  137  KLNFRLIACTNKNLEQEVAAGRFREDLYYRLAVIPITMPPLRERLNDIIPLAESFIKKYS  196
             +N R+I  T+  L   V  G FR DLY+RL  ++I + PLR R++ IIP+  SFI+K +
Sbjct  154  PVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAA  213

Query  197  TVL-VKNITLSESTRRAMLNYRWPGNVRQLENAIQRGMILNRDGVIYPDALGLPENDIAD  255
            + L      +++     +L+Y WPGN+R+L  A +R          +   LGLP  D++ 
Sbjct  214  STLQCAPREITQEHYECLLSYSWPGNIRELKAAAER----------F--VLGLPPLDLPC  261

Query  256  HSELQWP  262
            H   ++P
Sbjct  262  HCGQERP  268

45) lafK in NC_013364


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  154 bits (568),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 100/247 (41%), Positives = 161/247 (66%), Gaps = 16/247 (6%)

Query  17   LAKRVAAFNVPVLIQGETGAGKECVAKYIHTVAFGENENAPYIGVNCAAIPENMLEATLF  76
            + K VA++++ ++++GETG+GK+ +A+ IH ++      +  ++VNCAAIPE + E+ LF
Sbjct  37   MIKTVAPLKIDLVLEGETGTGKDTLARKIHQLS---GCRGKLVAVNCAAIPETLAESELF  93

Query  77   GYDKGAFTGAIASVPGKMELANNGTLLLDEIGDMPLALQAKILRVLQEQQVERLGSNRQI  136
            G ++GA+TGA  + +G +E A+NG L+LDEI+ MPL+LQAK+LRVL+++ VERLG+ R  
Sbjct  94   GINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFT  153

Query  137  KLNFRLIACTNKNLEQEVAAGRFREDLYYRLAVIPITMPPLRERLNDIIPLAESFIKKYS  196
             +N R+I  T+  L   V  G FR DLY+RL  ++I + PLR R++ IIP+  SFI+K +
Sbjct  154  PVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAA  213

Query  197  TVL-VKNITLSESTRRAMLNYRWPGNVRQLENAIQRGMILNRDGVIYPDALGLPENDIAD  255
            + L      +++     +L+Y WPGN+R+L  A +R          +   LGLP  D++ 
Sbjct  214  STLQCAPREITQEHYECLLSYSWPGNIRELKAAAER----------F--VLGLPPLDLPC  261

Query  256  HSELQWP  262
            H   ++P
Sbjct  262  HCGQERP  268

46) lafK in NC_013361


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  154 bits (568),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 100/247 (41%), Positives = 161/247 (66%), Gaps = 16/247 (6%)

Query  17   LAKRVAAFNVPVLIQGETGAGKECVAKYIHTVAFGENENAPYIGVNCAAIPENMLEATLF  76
            + K VA++++ ++++GETG+GK+ +A+ IH ++      +  ++VNCAAIPE + E+ LF
Sbjct  37   MIKTVAPLKIDLVLEGETGTGKDTLARKIHQLS---GCRGKLVAVNCAAIPETLAESELF  93

Query  77   GYDKGAFTGAIASVPGKMELANNGTLLLDEIGDMPLALQAKILRVLQEQQVERLGSNRQI  136
            G ++GA+TGA  + +G +E A+NG L+LDEI+ MPL+LQAK+LRVL+++ VERLG+ R  
Sbjct  94   GINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFT  153

Query  137  KLNFRLIACTNKNLEQEVAAGRFREDLYYRLAVIPITMPPLRERLNDIIPLAESFIKKYS  196
             +N R+I  T+  L   V  G FR DLY+RL  ++I + PLR R++ IIP+  SFI+K +
Sbjct  154  PVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAA  213

Query  197  TVL-VKNITLSESTRRAMLNYRWPGNVRQLENAIQRGMILNRDGVIYPDALGLPENDIAD  255
            + L      +++     +L+Y WPGN+R+L  A +R          +   LGLP  D++ 
Sbjct  214  STLQCAPREITQEHYECLLSYSWPGNIRELKAAAER----------F--VLGLPPLDLPC  261

Query  256  HSELQWP  262
            H   ++P
Sbjct  262  HCGQERP  268

47) lafK in NC_017635


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  154 bits (568),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 100/247 (41%), Positives = 161/247 (66%), Gaps = 16/247 (6%)

Query  17   LAKRVAAFNVPVLIQGETGAGKECVAKYIHTVAFGENENAPYIGVNCAAIPENMLEATLF  76
            + K VA++++ ++++GETG+GK+ +A+ IH ++      +  ++VNCAAIPE + E+ LF
Sbjct  37   MIKTVAPLKIDLVLEGETGTGKDTLARKIHQLS---GCRGKLVAVNCAAIPETLAESELF  93

Query  77   GYDKGAFTGAIASVPGKMELANNGTLLLDEIGDMPLALQAKILRVLQEQQVERLGSNRQI  136
            G ++GA+TGA  + +G +E A+NG L+LDEI+ MPL+LQAK+LRVL+++ VERLG+ R  
Sbjct  94   GINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFT  153

Query  137  KLNFRLIACTNKNLEQEVAAGRFREDLYYRLAVIPITMPPLRERLNDIIPLAESFIKKYS  196
             +N R+I  T+  L   V  G FR DLY+RL  ++I + PLR R++ IIP+  SFI+K +
Sbjct  154  PVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAA  213

Query  197  TVL-VKNITLSESTRRAMLNYRWPGNVRQLENAIQRGMILNRDGVIYPDALGLPENDIAD  255
            + L      +++     +L+Y WPGN+R+L  A +R          +   LGLP  D++ 
Sbjct  214  STLQCAPREITQEHYECLLSYSWPGNIRELKAAAER----------F--VLGLPPLDLPC  261

Query  256  HSELQWP  262
            H   ++P
Sbjct  262  HCGQERP  268

48) WFL_01245 in NC_017664


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  154 bits (568),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 100/247 (41%), Positives = 161/247 (66%), Gaps = 16/247 (6%)

Query  17   LAKRVAAFNVPVLIQGETGAGKECVAKYIHTVAFGENENAPYIGVNCAAIPENMLEATLF  76
            + K VA++++ ++++GETG+GK+ +A+ IH ++      +  ++VNCAAIPE + E+ LF
Sbjct  37   MIKTVAPLKIDLVLEGETGTGKDTLARKIHQLS---GCRGKLVAVNCAAIPETLAESELF  93

Query  77   GYDKGAFTGAIASVPGKMELANNGTLLLDEIGDMPLALQAKILRVLQEQQVERLGSNRQI  136
            G ++GA+TGA  + +G +E A+NG L+LDEI+ MPL+LQAK+LRVL+++ VERLG+ R  
Sbjct  94   GINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFT  153

Query  137  KLNFRLIACTNKNLEQEVAAGRFREDLYYRLAVIPITMPPLRERLNDIIPLAESFIKKYS  196
             +N R+I  T+  L   V  G FR DLY+RL  ++I + PLR R++ IIP+  SFI+K +
Sbjct  154  PVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAA  213

Query  197  TVL-VKNITLSESTRRAMLNYRWPGNVRQLENAIQRGMILNRDGVIYPDALGLPENDIAD  255
            + L      +++     +L+Y WPGN+R+L  A +R          +   LGLP  D++ 
Sbjct  214  STLQCAPREITQEHYECLLSYSWPGNIRELKAAAER----------F--VLGLPPLDLPC  261

Query  256  HSELQWP  262
            H   ++P
Sbjct  262  HCGQERP  268

49) Metme_3757 in NC_015572


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  152 bits (559),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 99/227 (44%), Positives = 153/227 (68%), Gaps = 5/227 (2%)

Query  15   EALIRSARMVAATDVTVLIKGETGTGKEVLASAIQKDSPRAGKPFVTLNCAALPEGLVES  74
            ++L    + VA+  + +++ GETGTGK+ LA  I++ S   GK +V++NCAA+PE L ES
Sbjct  32   DTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGK-LVAVNCAAIPETLAES  90

Query  75   EIFGHKKGAFTGATSDKQGLFQAADGGTLFLDEINSLPLTIQSKLLRFLESGECLPVGGT  134
            E+FG ++GA+TGA   + G  +AAD G LFLDEI+S+PL++Q+K+LR LE+     +GGT
Sbjct  91   ELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGT  150

Query  135  KPYHVNVRVIAATNSDLTTQIEAGEFRRDLYFRLNVVPLELPALHERSEDIEILAKHFFA  194
            +   VN+RVI AT++ L T +E G FRRDLYFRLN V+++L +L+ R E I  + + F+ 
Sbjct  151  RFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQ  210

Query  195  HFSEAHSLQSPT--FSKQALKALKTHKWPGNVRELRNLCERLSILLA  239
                A +LQ +   ++++    L +  WPGN+REL+   ER+ + L+
Sbjct  211  --KAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLP  255

50) Cpha266_1886 in NC_008639


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  150 bits (553),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 111/277 (41%), Positives = 165/277 (60%), Gaps = 12/277 (4%)

Query  17   LRELALQVADTEITVLIIGETGAGKEVLARFIHANSRRADKSFIPVNCGAIPSGILESEL  76
            L E+   VA   I +++ GETG+GK+ LAR IH  S   +K +++VNC+AIP  + ESEL
Sbjct  34   LAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGK-LVAVNCAAIPETLAESEL  92

Query  77   FGHEKGAFTGAFQSRKGYFESADRGTIFLDEIGEMPLETQVKFLRVLETGEFQRVGSSDS  136
            FG ++GA+TGA Q+R GY E+AD G +FLDEI+ MPL  Q K LRVLE    +R+G++  
Sbjct  93   FGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRF  152

Query  137  VFADTRIIAATNKNLYQAVADGNFREDLYYRLRSVELQIPPLRERGPDILLLAEHFIHEF  196
               + R+I AT+  L   V  G+FR DLY+RL +V +Q+ PLR R   I+ +   FI+  
Sbjct  153  TPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKA  212

Query  197  ERKHRVIFEGFTPESAELMLRYPWPGNIRELRNLVESLLI----LEKGKRITTEILE-KH  251
                +     +T E  E +L Y+WPGNIREL+   E +++    L+   +   E  + K+
Sbjct  213  ASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERPQLKE  272

Query  252  LIQRNR----YKSLVH--EPTKQENQELNIIYRSLIQ  282
            L++R      Y  LV+  ++  +  QEL I  R+L +
Sbjct  273  LMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYH  309

51) DND132_0036 in NC_016803


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  150 bits (551),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 99/242 (41%), Positives = 159/242 (66%), Gaps = 14/242 (5%)

Query  1    MSLNLDGIIGNSPALARVFKVLGKVAPTDSTVLVTGESGTGKELLVRALHRNSERRDMPF  60
            +SL  +  I+   +LA ++K    VAP    +++ GE+GTGK+ L R +H+ S  R+  +
Sbjct  20   ISLTEEQPIDIHDTLAEMIK---TVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGK-L  75

Query  61   VPINCGAIPRELLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGDMDLSLQVKI  120
            V++NC+AIP  L ESELFG ++GA+T A ++R+G  E AD G +FLDEI+ M LSLQ K+
Sbjct  76   VAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKM  135

Query  121  LRALQEKEIERVGGTSIKKVDVRVVAATNRDLEGEVSSGRFREDLFYRLNVIPLKLPPLR  180
            LR L+++ +ER+GGT +  V++RV+ AT+  L   V  G FR DL++RLN ++++L PLR
Sbjct  136  LRVLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLR  195

Query  181  SRGMDILLLAEHFLNR-----HCGSKARKALTLSDKAREMLLTYSWPGNVRELENFMERL  235
            +R   I+ +   F+++     +C+++      +++   E LL+YSWPGN+REL    ER+
Sbjct  196  ARIEVIIPMFRSFIQKAASTLQCAPRE-----ITQEHYECLLSYSWPGNIRELKAAAERF  250

Query  236  TI  237
             +
Sbjct  251  VL  252

52) Desaf_3756 in NC_016629


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  147 bits (540),  Expect = 8e-37, Method: Compositional matrix adjust.
 Identities = 99/242 (41%), Positives = 153/242 (64%), Gaps = 9/242 (3%)

Query  21   VLAKVAPTDSTVLVTGESGTGKELLVRALHRNSRRTEKPFVPINCGAIPKELLESELFGH  80
            ++  VAP    +++ GE+GTGK+ L R +H+ S    K +V++NC+AIP  L ESELFG 
Sbjct  37   MIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGK-LVAVNCAAIPETLAESELFGI  95

Query  81   EKGAFTHAIRTRPGRFEMADGGTVFLDEIGEMDLSLQVKILRVLQEKEFERVGATKTQKV  140
            ++GA+T A ++R+G  E AD G +FLDEI+ M LSLQ K+LRVL+++  ER+G+T+   V
Sbjct  96   NNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPV  155

Query  141  DVRLVAATNRDLEGEVAAGRFREDLFYRLNVIPMHLPPLRERGRDVMILATHFLAKFCEM  200
            ++R++ AT+  L   V  G FR DL++RLN ++++L PLR R   ++ +   F+ K    
Sbjct  156  NMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAAST  215

Query  201  KQRPPLSVAPDAEELLLRYEWPGNVRELVNFMER-------VSILCESDILRPADLPEKM  253
             Q +P  ++ +  E LL Y WPGN+REL    ER       + + C+ +  RP +L E M
Sbjct  216  LQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERP-QLKELM  274

Query  254  WR  255
            +R
Sbjct  275  RR  276

53) DGI_0391 in NC_022444


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  145 bits (535),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 100/249 (41%), Positives = 158/249 (64%), Gaps = 10/249 (4%)

Query  18   LFKVIAKVAPTDSTVLVTGESGTGKELLVRALHSNSLRKDKPFVPINCGAIPKELLESEL  77
            L  +I  VAP    +++ GE+GTGK+ L R +H  S  ++K +V++NC+AIP  L ESEL
Sbjct  34   LAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGK-LVAVNCAAIPETLAESEL  92

Query  78   FGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMELSLQVKILRVLQEKEFERVGGAGA  137
            FG ++GA+T A ++R+G  E AD G +FLDEI+ M LSLQ K+LRVL+++  ER+GG+  
Sbjct  93   FGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRF  152

Query  138  KKVDVRIVAATNRDLEEEVRTGRFREDLFYRLNVIPLHLPPLRDRGNDVLLLAESFLRRF  197
              V++R++ AT+  L   V  G FR DL++RLN ++++L PLR R + ++ +  SF+++ 
Sbjct  153  TPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKA  212

Query  198  CDKKNRALLTLTPKARELLLGYSWPGNVRELENFMER---------LSILCDNDAVTVDD  248
                + A   +T    E LL+YSWPGN+REL    ER         L+  C+++   + +
Sbjct  213  ASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERPQLKE  272

Query  249  LPEKILREV  257
            L  +I ++V
Sbjct  273  LMRRIEKNV  281

54) DMR_31690 in NC_012796


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  142 bits (523),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 100/247 (41%), Positives = 152/247 (62%), Gaps = 20/247 (8%)

Query  21   VLAKVAPTDSTVLVTGESGTGKELLVRALHANSRRAGKPFVPVNCGAIPRELLESELFGH  80
            ++  VAP    +++ GE+GTGK+ L R +H  S   GK +V+VNC+AIP  L ESELFG 
Sbjct  37   MIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGK-LVAVNCAAIPETLAESELFGI  95

Query  81   EKGAFTSAVRTRQGRFELAEGGTIFLDEIGEMDLSLQVKILRALQEKEYERVGGDKTLKA  140
            ++GA+T+A ++R G  E A+ G +FLDEI+ M LSLQ K+LR L+++  ER+GG +    
Sbjct  96   NNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPV  155

Query  141  DVRIVAATNRDLETEVAAGRFREDLYYRLNVIPLHLPPLRERGQDILLLADYFLGRFCRQ  200
            ++R++ AT+  L T V  G FR DLY+RLN ++++L PLR R + I+ +   F+     Q
Sbjct  156  NMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFI-----Q  210

Query  201  KSRPTLTFSPEARGL-----VLGYPWPGNVRELENFMER---------LSILCDSEVVGI  246
            K+ +TL  +P          +L+Y+WPGN+REL    ER         L+  C+ E   +
Sbjct  211  KAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCHCGQERPQL  270

Query  247  EDLPRKI  253
             +L R+I
Sbjct  271  KELMRRI  277

55) Hneap_1253 in NC_013422


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  137 bits (503),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 93/231 (41%), Positives = 154/231 (67%), Gaps = 15/231 (6%)

Query  16   VFESVLRSVQIVAATEATTLILGESGTGKELVARALHDGSGRRARPYVAVNCASFSEALA  75
            + +++   ++ VA+     ++ GE+GTGK+ +AR +H+ SG R++  VAVNCA+++E+LA
Sbjct  30   IHDTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGK-LVAVNCAAIPETLA  88

Query  76   ESQLFGHKRGAFTGAQCDYDGQIRSADGGTLFLDEIAELSLPVQAKLLRFLETGEVMGLG  135
            ES+LFG + GA+TGA     G + +AD G LFLDEI  ++L++QAK+LR LE   V  LG
Sbjct  89   ESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLG  148

Query  136  ESQSRRVDVRLVAATHRDLLQMVEQGLFRADLFYRLQVVPIELPPLRMRQGDIDWLLARF  195
             ++   V++R++ AT+  LL +VE+G FR DL++RL+ V+I+L PLR R   I+ +++ F
Sbjct  149  GTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRAR---IEVIIPMF  205

Query  196  MNEFAERYTLHMPRLTSKARGVIRRH-------PWPGNVRELRNMAERLVI  239
             + F ++ +   + L   +R + + H       +WPGN+REL+  AER+V+
Sbjct  206  RS-FIQKAA---STLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFVL  252

56) Spea_0085 in NC_009901


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  137 bits (505),  Expect = 8e-34, Method: Compositional matrix adjust.
 Identities = 124/308 (41%), Positives = 190/308 (62%), Gaps = 24/308 (7%)

Query  127  LAHRAASTEATVLLTGESGTGKEPLARYIHRHSNRADKAFIAINCAAIPESILESILFGH  186
            +    A+    ++L GE+GTGK+ LAR IH+ S   +K ++A+NCAAIPE++ ES LFG 
Sbjct  37   MIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGK-LVAVNCAAIPETLAESELFGI  95

Query  187  IKGAFTGATTDQPGKFELANGGTLLLDEIGEMPlllqakllrvlQEREVERLGSHRSIAL  246
             +GA+TGA   ++G  E A+ G L+LDEI+ MPL LQAK+LRVL++R VERLG+ R  ++
Sbjct  96   NNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPV  155

Query  247  DIRVIAATNKDLRQAVQDGKFREDLFYRLDVLPIKILPLRQRREDILPIAEHFLQRYKIL  306
            ++RVI AT+  L   V+ G FR DL++RL+ ++I++ PLR R E I+P+   F+Q+    
Sbjct  156  NMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQK---A  212

Query  307  AANQQCYFSEQARNL---LLSHNWPGNVRELENTIQRALVMRRGQALQAEDLGLENQDGS  363
            A+  QC   E +++    LLS +WPGN+REL  + +R +            LGL   D +
Sbjct  213  ASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAERFV------------LGLPPLDLP  260

Query  364  ILVEQNELGLKASKRQAEFQYIIDTLKRHNGHRI-QTAEALGMTTRALRYKLAQMREEGI  422
                Q+   LK   R+ E + I D L RH GH I ++A+ LG+  R+L  ++  +    +
Sbjct  261  CHCGQERPQLKELMRRIEKNVIYDCLVRH-GHSIDDAAQELGIPLRTLYHRIKLL---NV  316

Query  423  DIERLLAQ  430
            +  R++AQ
Sbjct  317  NTGRVIAQ  324

57) SpiGrapes_2045 in NC_016633


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  134 bits (492),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 95/233 (41%), Positives = 149/233 (64%), Gaps = 9/233 (3%)

Query  9    NQQPLGESEVFLDFQNQLSRAATVNRSVLLVGERGSGKEIAARRLHFLSPRWQQNLVTVN  68
            ++QP++  + + +    +   A ++  ++L GE G+GK+  AR++H LS   + +LV+VN
Sbjct  24   EEQPIDIHDTLAEM---IKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGC-RGKLVAVN  79

Query  69   CAALPPSLIETELFGYEQGAFTGAQKTRKGRFEEAEGGTLFLDEIGIIPLEVQEKILRVV  128
            CAA+P +L E+ELFG ++GA+TGA ++R G  E A+ G LFLDEI+ +PL +Q K+LRV+
Sbjct  80   CAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVL  139

Query  129  EYGTYERVGSSVTHETNVRIIGATNADLPQLCKEGKFKEDLLDRLSFEVLFLPPLRKRGD  188
            E    ER+G++     N+R+I AT++ L  L   G F+ DL  RL+   + L PLR R +
Sbjct  140  ENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIE  199

Query  189  DILLLANYFAAKMA--LECGRQEMPILSEEVSAVLLGYSWPGNVRELKNVIER  239
             I+ +   F  K A  L+C+ +E+   ++E    LL+YSWPGN+RELK   ER
Sbjct  200  VIIPMFRSFIQKAASTLQCAPREI---TQEHYECLLSYSWPGNIRELKAAAER  249

58) pspF in NC_016617


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  128 bits (468),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 104/236 (45%), Positives = 145/236 (62%), Gaps = 15/236 (6%)

Query  7    SLLGESP-AFHAVLAHVSR-VAPLERPLLVIGERGTGKELIAARLHYLSRRWDRPFVKVN  64
            SL  E P  +H  LA++ + VAPL   L++ GE GTGK+ +A ++H LS  +++ +V VN
Sbjct  21   SLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGK-LVAVN  79

Query  65   CAALTESLLDSELFGHEAGAFTGAIRRQIGRVEQADGGTLFLDEIATASAAVQEKLLRAV  124
            CAA+ E+L +SELFG + GA+TGA + + G VE AD G LFLDEI + + ++Q K+LR +
Sbjct  80   CAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVL  139

Query  125  EYGEIERVGG-RTQTVDVRVIGATNADLPALAEAGRFRADLLDRLAFDVVTLPPLRARRE  183
            E   +ER+GG R   V++RVI AT++ L +L E G FR DL  RL    + L PLRAR E
Sbjct  140  ENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIE  199

Query  184  DIPVLAEHFALGMVRELERSLFPGFAPRALEQ-----LLDHGWPGNVRELRNAVER  234
             I  +   F       L+       APR + Q     LL  +WPGN+REL+ A ER
Sbjct  200  VIIPMFRSFIQKAASTLQC------APREITQEHYECLLSYSWPGNIRELKAAAER  249

59) A225_2562 in NC_018106


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  126 bits (460),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 94/231 (41%), Positives = 141/231 (62%), Gaps = 32/231 (13%)

Query  25   EQVSRLAPLDKPVLVIGERGTGKELIASRLHFLSSRWQGPFISLNCAALNENLLDSELFG  84
            E +  +APL   +++ GE GTGK+ +A ++H LS+  +G ++++NCAA+ E L +SELFG
Sbjct  36   EMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGC-RGKLVAVNCAAIPETLAESELFG  94

Query  85   HEAGAFTGASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQ  144
             + GA+TGA++ ++G  E AD G LFLDE+ + P+ +Q K+LRV+E   +ER+GG++   
Sbjct  95   INNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTP  154

Query  145  VNVRLVCATNADLPQMVEDGLFRADLLDRLAFDVVQLPPLRERQSDIMLLATQFAIQMCR  204
            VN+R++ AT++ L  +VE G FR DL  RL    +QL PLR R                 
Sbjct  155  VNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARI----------------  198

Query  205  ELGLPLFPGFSERAAMTLQ---------------NYRWPGNIRELKNVVER  240
            E+ +P+F +F ++AA TLQ               +Y WPGNIRELK   ER
Sbjct  199  EVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAER  249

60) pspF in NC_016612


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  126 bits (460),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 94/231 (41%), Positives = 141/231 (62%), Gaps = 32/231 (13%)

Query  20   EQVSRLAPLDKPVLVIGERGTGKELIASRLHFLSSRWQGPFISLNCAALNENLLDSELFG  79
            E +  +APL   +++ GE GTGK+ +A ++H LS+  +G ++++NCAA+ E L +SELFG
Sbjct  36   EMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGC-RGKLVAVNCAAIPETLAESELFG  94

Query  80   HEAGAFTGASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQ  139
             + GA+TGA++ ++G  E AD G LFLDE+ + P+ +Q K+LRV+E   +ER+GG++   
Sbjct  95   INNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTP  154

Query  140  VNVRLVCATNADLPQMVEDGLFRADLLDRLAFDVVQLPPLRERQSDIMLLATQFAIQMCR  199
            VN+R++ AT++ L  +VE G FR DL  RL    +QL PLR R                 
Sbjct  155  VNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARI----------------  198

Query  200  ELGLPLFPGFSERAAMTLQ---------------NYRWPGNIRELKNVVER  235
            E+ +P+F +F ++AA TLQ               +Y WPGNIRELK   ER
Sbjct  199  EVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNIRELKAAAER  249

61) Fbal_2587 in NC_014541


> AF083877|13|G4|4581632|AAD24684.1|Erwinia_amylovora_321|+|3465..4439|hrpS|-|sigma-54-dependent 
enhancer-binding protein HrpS
Length=324

 Score =  115 bits (419),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 102/251 (41%), Positives = 157/251 (63%), Gaps = 4/251 (1%)

Query  2    PTQRQHDNLIG-QSVSFHEVLDHVSK-VAPLNKPVLIIGERGTGKELIAERLHFLSSRWD  59
            P +R+H +L   Q++ +H+ L ++ K VAPL+  +++ GE GTGK+ +A ++H LS+ ++
Sbjct  14   PGRREHISLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRG  73

Query  60   QPYlklncaalnenlleselFGHESGAFTGASKRHEGRFERADKGTLFLDELANTSGLVQ  119
            +  + +NCAA+ E L ESELFG ++GA+TGA++ + G  E AD+G LFLDE+ + +  +Q
Sbjct  74   K-LVAVNCAAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQ  132

Query  120  EKLLRVIEYGEFERVGGSRTVRADVRLVCATNEDLPALAERGEFRADLLDRLAFDVITLP  179
             K+LRV+E    ER+GG+R    ++R++ AT+  L +L ERG FR DL  RL    I L 
Sbjct  133  AKMLRVLENRGVERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQ  192

Query  180  PLRERPEDVLLLAEHFAIQMTRQLELELFSGFTEKARRTLLDYHWPGNIRELKNTVERSV  239
            PLR R E ++ +   F  + +  L+      +T+     LL Y WPGNIRELK + ER V
Sbjct  193  PLRARIEVIIPMFRSFIQKAASTLQCAP-REITQEHYECLLSYSWPGNIRELKAAAERFV  251

Query  240  YRHNNAQLPLH  250
                  +LP H
Sbjct  252  LGLPPLDLPCH  262