Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of pilQ gene of AF000001

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) pilQ
( NP_458633.1 )

nucleotide-binding protein

NC_003198
(Salmonella enterica CT18)

0.0

100

2) STBHUCCB_44960
( YP_005219916.1 )

hypothetical protein

NC_016832
(Salmonella enterica P-stx-12)

0.0

100

3) pilQ
( NP_807844.1 )

nucleotide-binding protein

NC_004631
(Salmonella enterica Ty2)

0.0

100

4) TY21A_21615
( YP_007928483.1 )

nucleotide-binding protein

NC_021176
(Salmonella enterica Ty21a)

0.0

5) pilQ
( YP_002639904.1 )

nucleotide-binding protein

NC_012125
(Salmonella enterica RKS4594)

0.0

6) pilQ
( NP_928383.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

3e-146

7) YE3502
( YP_001007663.1 )

putative type IV pilus protein

NC_008800
(Yersinia enterocolitica 8081)

5e-132

8) ECSE_P1-0112
( YP_002296137.1 )

ATP-binding protein PilQ

NC_011419
(Escherichia coli SE11)

3e-131

9) YpsIP31758_3731
( YP_001402685.1 )

type IV secretion system protein

NC_009708
(Yersinia pseudotuberculosis IP 31758)

4e-131

10) SEEH1578_00590
( YP_008248854.1 )

ATP-binding protein

NC_021811
(Salmonella enterica 41578)

6e-131

11) CFSAN002069_23050
( YP_008253313.1 )

hypothetical protein

NC_021813
(Salmonella enterica CFSAN002069)

6e-131

12) pilQ
( YP_006203611.1 )

pilus ATP-binding protein

NC_017718
(Salmonella enterica SL1344)

6e-131

13) SeHA_A0114
( YP_002043949.1 )

ATP-binding protein

NC_011081
(Salmonella enterica SL476)

6e-131

14) pilQ
( YP_006200935.1 )

ATP-binding protein

NC_017675
(Salmonella enterica ST4/74)

6e-131

15) O3K_25702
( YP_006781738.1 )

type IV prepilin cluster, ATP-binding protein

NC_018659
(Escherichia coli 2011C-3493)

3e-130

16) EKO11_4733
( YP_005280350.1 )

type II secretion system protein E

NC_016904
(Escherichia coli KO11FL)

3e-130

17) pilQ
( YP_006137026.1 )

IncI1 conjugal transfer protein PilQ

NC_017642
(Escherichia coli UMNK88)

3e-130

18) pilQ
( YP_006127342.1 )

Type IVB thin prepilin ATPase

NC_017637
(Escherichia coli W)

3e-130

19) WFL_23665
( YP_006176111.1 )

type IV prepilin cluster; ATP-binding protein

NC_017665
(Escherichia coli W)

3e-130

20) EJP617_06750
( YP_005817243.1 )

hypothetical protein

NC_017445
(Erwinia sp. Ejp617)

9e-129

21) SPAB_05360
( YP_001591466.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

9e-117

22) ECL_00419
( YP_003610934.1 )

type IV secretion system protein

NC_014121
(Enterobacter cloacae ATCC 13047)

4e-116

23) PAGR_g3870
( YP_005994578.1 )

type IV secretion system protein PilQ

NC_017554
(Pantoea ananatis PA13)

2e-115

24) pilQ
( YP_005197434.1 )

type IV secretion system protein PilQ

NC_016816
(Pantoea ananatis LMG 5342)

2e-114

25) Ser39006_1485
( YP_008521867.1 )

type II secretion system protein E

NC_022268
(Serratia sp. ATCC 39006)

4e-114

26) outE
( YP_005804231.1 )

type II secretion system protein outE

NC_017390
(Erwinia pyrifoliae DSM 12163)

1e-94

27) pilQ
( YP_002650208.1 )

type IV secretion system protein

NC_012214
(Erwinia pyrifoliae Ep1/96)

1e-94

28) pilQ
( YP_005817283.1 )

type IV secretion system protein

NC_017445
(Erwinia sp. Ejp617)

1e-94

29) pilQ_3
( YP_002924139.1 )

PilQ type IV pilus biogenesis protein ATPase

NC_012751
(Candidatus Hamiltonella defensa T5A)

1e-92

30) epsE
( YP_008574651.1 )

Type II traffic warden ATPase

NC_022371
(Escherichia coli PMV-1)

2e-84

31) pilQ
( YP_002399370.1 )

Type IV pilus (ATPase)

NC_011745
(Escherichia coli ED1a)

4e-81

• Sequence Alignments

1) pilQ in NC_003198


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  883 bits (3345),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 571/571 (100%), Positives = 571/571 (100%), Gaps = 0/571 (0%)

Query  1    MSEHNDAVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRY  60
            MSEHNDAVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRY
Sbjct  1    MSEHNDAVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRY  60

Query  61   SEMARQQSEKGEKGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMR  120
            SEMARQQSEKGEKGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMR
Sbjct  61   SEMARQQSEKGEKGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMR  120

Query  121  VHGELETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARY  180
            VHGELETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARY
Sbjct  121  VHGELETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARY  180

Query  181  SHTPTADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGK  240
            SHTPTADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGK
Sbjct  181  SHTPTADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGK  240

Query  241  STTLRACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTS  300
            STTLRACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTS
Sbjct  241  STTLRACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTS  300

Query  301  ALRLDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVA  360
            ALRLDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVA
Sbjct  301  ALRLDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVA  360

Query  361  DAQLLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNE  420
            DAQLLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNE
Sbjct  361  DAQLLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNE  420

Query  421  EGCPTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREM  480
            EGCPTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREM
Sbjct  421  EGCPTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREM  480

Query  481  GGITRRIHLLHKLNDGLVdpldadliipldedevmqvvsdqvasssdIDTSLIERLAMVI  540
            GGITRRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQVVSDQVASSSDIDTSLIERLAMVI
Sbjct  481  GGITRRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQVVSDQVASSSDIDTSLIERLAMVI  540

Query  541  AASVREGMKQGVEEAIKEGVAAGMAALKEVA  571
            AASVREGMKQGVEEAIKEGVAAGMAALKEVA
Sbjct  541  AASVREGMKQGVEEAIKEGVAAGMAALKEVA  571

2) STBHUCCB_44960 in NC_016832


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  883 bits (3345),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 571/571 (100%), Positives = 571/571 (100%), Gaps = 0/571 (0%)

Query  1    MSEHNDAVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRY  60
            MSEHNDAVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRY
Sbjct  1    MSEHNDAVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRY  60

Query  61   SEMARQQSEKGEKGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMR  120
            SEMARQQSEKGEKGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMR
Sbjct  61   SEMARQQSEKGEKGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMR  120

Query  121  VHGELETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARY  180
            VHGELETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARY
Sbjct  121  VHGELETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARY  180

Query  181  SHTPTADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGK  240
            SHTPTADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGK
Sbjct  181  SHTPTADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGK  240

Query  241  STTLRACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTS  300
            STTLRACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTS
Sbjct  241  STTLRACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTS  300

Query  301  ALRLDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVA  360
            ALRLDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVA
Sbjct  301  ALRLDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVA  360

Query  361  DAQLLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNE  420
            DAQLLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNE
Sbjct  361  DAQLLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNE  420

Query  421  EGCPTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREM  480
            EGCPTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREM
Sbjct  421  EGCPTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREM  480

Query  481  GGITRRIHLLHKLNDGLVdpldadliipldedevmqvvsdqvasssdIDTSLIERLAMVI  540
            GGITRRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQVVSDQVASSSDIDTSLIERLAMVI
Sbjct  481  GGITRRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQVVSDQVASSSDIDTSLIERLAMVI  540

Query  541  AASVREGMKQGVEEAIKEGVAAGMAALKEVA  571
            AASVREGMKQGVEEAIKEGVAAGMAALKEVA
Sbjct  541  AASVREGMKQGVEEAIKEGVAAGMAALKEVA  571

3) pilQ in NC_004631


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  883 bits (3345),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 571/571 (100%), Positives = 571/571 (100%), Gaps = 0/571 (0%)

Query  1    MSEHNDAVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRY  60
            MSEHNDAVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRY
Sbjct  1    MSEHNDAVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRY  60

Query  61   SEMARQQSEKGEKGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMR  120
            SEMARQQSEKGEKGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMR
Sbjct  61   SEMARQQSEKGEKGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMR  120

Query  121  VHGELETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARY  180
            VHGELETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARY
Sbjct  121  VHGELETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARY  180

Query  181  SHTPTADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGK  240
            SHTPTADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGK
Sbjct  181  SHTPTADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGK  240

Query  241  STTLRACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTS  300
            STTLRACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTS
Sbjct  241  STTLRACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTS  300

Query  301  ALRLDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVA  360
            ALRLDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVA
Sbjct  301  ALRLDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVA  360

Query  361  DAQLLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNE  420
            DAQLLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNE
Sbjct  361  DAQLLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNE  420

Query  421  EGCPTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREM  480
            EGCPTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREM
Sbjct  421  EGCPTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREM  480

Query  481  GGITRRIHLLHKLNDGLVdpldadliipldedevmqvvsdqvasssdIDTSLIERLAMVI  540
            GGITRRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQVVSDQVASSSDIDTSLIERLAMVI
Sbjct  481  GGITRRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQVVSDQVASSSDIDTSLIERLAMVI  540

Query  541  AASVREGMKQGVEEAIKEGVAAGMAALKEVA  571
            AASVREGMKQGVEEAIKEGVAAGMAALKEVA
Sbjct  541  AASVREGMKQGVEEAIKEGVAAGMAALKEVA  571

4) TY21A_21615 in NC_021176


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  882 bits (3340),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 570/571 (99%), Positives = 571/571 (100%), Gaps = 0/571 (0%)

Query  1    MSEHNDAVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRY  60
            MSEHNDAVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRY
Sbjct  1    MSEHNDAVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRY  60

Query  61   SEMARQQSEKGEKGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMR  120
            SEMARQQSEKGEKGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMR
Sbjct  61   SEMARQQSEKGEKGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMR  120

Query  121  VHGELETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARY  180
            VHGELETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARY
Sbjct  121  VHGELETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARY  180

Query  181  SHTPTADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGK  240
            SHTPTADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGK
Sbjct  181  SHTPTADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGK  240

Query  241  STTLRACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTSIICDKADEAEVRLAWQRVLTS  300
            STTLRACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQT+IICDKADEAEVRLAWQRVLTS
Sbjct  241  STTLRACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTS  300

Query  301  ALRLDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVA  360
            ALRLDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVA
Sbjct  301  ALRLDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVA  360

Query  361  DAQLLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNE  420
            DAQLLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNE
Sbjct  361  DAQLLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNE  420

Query  421  EGCPTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREM  480
            EGCPTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREM
Sbjct  421  EGCPTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREM  480

Query  481  GGITRRIHLLHKLNDGLVdpldadliipldedevmqvvsdqvasssdIDTSLIERLAMVI  540
            GGITRRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQVVSDQVASSSDIDTSLIERLAMVI
Sbjct  481  GGITRRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQVVSDQVASSSDIDTSLIERLAMVI  540

Query  541  AASVREGMKQGVEEAIKEGVAAGMAALKEVA  571
            AASVREGMKQGVEEAIKEGVAAGMAALKEVA
Sbjct  541  AASVREGMKQGVEEAIKEGVAAGMAALKEVA  571

5) pilQ in NC_012125


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  880 bits (3333),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 569/571 (99%), Positives = 569/571 (99%), Gaps = 0/571 (0%)

Query  1    MSEHNDAVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRY  60
            MSEHNDAVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRY
Sbjct  1    MSEHNDAVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRY  60

Query  61   SEMARQQSEKGEKGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMR  120
            SEMARQQSEKGEKGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMR
Sbjct  61   SEMARQQSEKGEKGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMR  120

Query  121  VHGELETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARY  180
            VHGELETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARY
Sbjct  121  VHGELETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARY  180

Query  181  SHTPTADGLHFVMRVIPDDGDVVPTLEKLGFLPEQIRLIKRTLRLPEGMIILSGPTGAGK  240
            SHTPTADGLHFVMRVIPDDGDVVPTLEKLGFLP QIRLIKRTLRLPEGMIILSGPTGAGK
Sbjct  181  SHTPTADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGK  240

Query  241  STTLRACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRALTS  300
            STTLRACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQR LTS
Sbjct  241  STTLRACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTS  300

Query  301  ALRLDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVA  360
            ALRLDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVA
Sbjct  301  ALRLDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVA  360

Query  361  DAQLLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNE  420
            DAQLLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNE
Sbjct  361  DAQLLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNE  420

Query  421  EGCPTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREM  480
            EGCPTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREM
Sbjct  421  EGCPTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREM  480

Query  481  GGITRRIHLLHKLNDGLVdpldadliipldedevmqvvsdqvasssdIDTSLIERLAMVI  540
            GGITRRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQVVSDQVASSSDIDTSLIERLAMVI
Sbjct  481  GGITRRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQVVSDQVASSSDIDTSLIERLAMVI  540

Query  541  AASVREGMKQGVEEAIKEGVAAGMAALKEVA  571
            AASVREGMKQGVEEAIKEGVAAGMAALKEVA
Sbjct  541  AASVREGMKQGVEEAIKEGVAAGMAALKEVA  571

6) pilQ in NC_005126


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  511 bits (1929),  Expect = 3e-146, Method: Compositional matrix adjust.
 Identities = 313/510 (62%), Positives = 405/510 (80%), Gaps = 9/510 (1%)

Query  8    NDAVLLLCEEQQATVL---IDNNRRGDPQVQTRVMQLLEATPEAEIRFVNLSELQ--ANR  62
            ++  +LL ++ ++T+L   +D++RR D  VQ +VM L+E  P   +R+V  SEL   ++ 
Sbjct  4    HNDAVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEM  63

Query  63   QKQNQRTNEQGVCLSDLT-DVSERQKQVLTCFELAKKLNASDIHLTISPGLTRIEMRIHG  121
             +Q+    E+G+ L D+  +VS RQ +VL  F +AK + ASDIH T  PGLTRIEMR+HG
Sbjct  64   ARQQSEKGEKGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMRVHG  123

Query  122  elevvnelseeeGMALASTIILSMCDVTETQFFPGRQQDGRIKADFLRRVHLYGARYSHT  181
            ELE V+EL+EE+G A A+TIILSMCDVTE QF++GR+QDGR+ A FLR+V L+GARYSHT
Sbjct  124  ELETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHT  183

Query  182  PTADGLYVVMRVIADDGDKVPTLTQLGFLPQQIKRVSRILRLPEGLIVLSGPTGSGKSTT  241
            PTADGL  VMRVI+DDGD VPTL +LGFLP+QI+ + R LRLPEG+I+LSGPTG+GKSTT
Sbjct  184  PTADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTT  243

Query  242  LRTFCRQYLDRTGGKKRLLTVEDPPEGRIAGAIQTPIVCDKSDEEAVRLAWHRALTSALR  301
            LR+    YL RT  KKRLLTVEDPPEGRI GAIQTPI+CDK+DE  VRLAW+R LTSALR
Sbjct  244  LRACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALR  303

Query  302  LDPDAVMPGEMRDLTSMLTAIYAAQTGHSVMTTLHTNSAVGIPERMITMGVNagliadaq  361
            LDPDA++PGE+RDL S+L++I+AAQTGH V++TLH+NSA +IPERMITMG NAGL+ADAQ
Sbjct  304  LDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQ  363

Query  362  llialiSQRLVQTLCPHCRVPWAQKQAVLDEEQRAYLMRYCHAPGTCCVENLYFRHPEGC  421
            LL++LISQRLVQ LCP+CR+PW+ K+  L  E+R YL +YC   G C  ENL FR+ EGC
Sbjct  364  LLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGC  423

Query  422  EHCCQTITLSGR---IVSRGVTGRSVVAEVIRPDARFFTLLMTEGKEAARQHWVSNLGGI  478
              C +++ ++G+    V++GV+GRSVVAEV+R D+ +F LL+ +GKEAA+  W+ ++GGI
Sbjct  424  PTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGI  483

Query  479  TRRQHLLHKLNAGLIDPLEADLVCPLDEDD  508
            TRR HLLHKLN GL+DPL+ADL+ PLDED+
Sbjct  484  TRRIHLLHKLNDGLVDPLDADLIIPLDEDE  513

7) YE3502 in NC_008800


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  464 bits (1748),  Expect = 5e-132, Method: Compositional matrix adjust.
 Identities = 272/495 (55%), Positives = 370/495 (75%), Gaps = 7/495 (1%)

Query  23   LVIDNNRRTDPRVQRWVMEMARIHTGAKNEFVALSEL---NNRRTRITDGSQYSICLKDL  79
            L++D++RRTD  VQ+ VM +   + G    +V+ SEL   ++   + ++ ++ ++ L D+
Sbjct  21   LLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQQSEKGEKGLRLEDI  80

Query  80   T-NISERQKKVLRYFELSRQLRASDIHLIIDRKLTRVEMRLYGDLEEVDSLPRWEGMALA  138
              ++S RQ  VL YF +++++ ASDIH      LTR+EMR+ G+LE V  L+  +G A A
Sbjct  81   KKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMRVHGELETVSELAEEDGKAQA  140

Query  139  STIILSMCDVAETQFYPGREQGGRVKSDFARKVGVFGARYEHRPTADGLYVVMRIIDDDG  198
            +TIILSMCDV+E QFY+GR Q+GRV + F RKVG+FGARY H PTADGL  VMR+I DDG
Sbjct  141  ATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTPTADGLHFVMRVIPDDG  200

Query  199  DAVPTLNTLGFMPEQRAQAEKILRIPEGMVILSGPTGSGKSTTLRSFSRMYLDRTEGRRR  258
            D VPTL+ LGF+P Q     + LR+PEGM+ILSGPTG+GKSTTLR+ S +YL RT  ++R
Sbjct  201  DVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTLRACSDLYLKRTRYKKR  260

Query  259  LLTIEDPPEGGIKGAIQTPIIADKSRTDVVQQAWDSANASALRLDPDAILNGEMRDLISI  318
            LLT+EDPPEG I GAIQTPII DK+    V+ AW+   +SALRLDPDAIL GE+RDLISI
Sbjct  261  LLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRLDPDAILPGELRDLISI  320

Query  319  VAAVYAAQTGHLLLTTLHANSAVGILKRMAVLGVSEALIADAQLIVGLISQRLVQMLCPH  378
            +A+++AAQTGHL+L+TLH+NSA +I  RM  +G + +L+ADAQL+VGLISQRLVQ+LCP+
Sbjct  321  LAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQLLVGLISQRLVQVLCPE  380

Query  379  CRIPWETKAPRLTPEIRIRLERYCCVKGICHPQQLWFRSEEGCAHCQQRLAISDR---IV  435
            CRIPW  K  +LT E R  LE+YC V G+C+P++L FR+EEGC+ C++ + I+++    V
Sbjct  381  CRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCPTCRKAVIIGGKQVATV  440

Query  436  SRGVIGRSVVAEVIRPDARFMSLYLTHGPAVARQYWVNSLAGITRVTHLLHKLAAGLVDP  495
            ++GV GRSVVAEV+R D+ +  L L +G   A+ YW+  ++GITR  HLLHKL  GLVDP
Sbjct  441  GKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGITRRIHLLHKLNDGLVDP  500

Query  496  LDADLVCSLDEDHIL  510
            LDADL+ +LDED+++
Sbjct  501  LDADLIIPLDEDEVM  515

8) ECSE_P1-0112 in NC_011419


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  461 bits (1739),  Expect = 3e-131, Method: Compositional matrix adjust.
 Identities = 263/513 (52%), Positives = 389/513 (76%), Gaps = 8/513 (1%)

Query  8    DALLFISRGDT-HEILIETNQRTRPDVQSNLQELLKLYPDINPKVVSLSEL---QEAGQD  63
              LL+ + + T  E+L+++++RT   VQ ++  L+   P++  ++V+ SEL    E +++
Sbjct  7    AVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQ  66

Query  64   EKNRGQKERIIHLKDLA-DVSESEKKVLSYFETARKLGASDIHFLISESIFKVRMRIFGE  122
            + ++G+K   ++L D+  +VS  +  VL+YF  A+ +GASDIH     ++ ++ MR+ GE
Sbjct  67   QSEKGEKG--LRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMRVHGE  124

Query  123  LQTVDEDQPALGYSLCATAILSMADVTETSFFPQREQDARLSPQLMRKIGIFGARYSHRP  182
            L+TV E     G +  AT ILSM DVTE  F++ R QD+R++++++RK+G+FGARYSH P
Sbjct  125  LETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTP  184

Query  183  TGDGLIAVMRLIPDDGDKVPTFKQLGFIPEQIRLLNIMLRRPEGKIVLSGPTGSGKSTTL  242
            T+DGL  VMR+IPDDGD VPT+ +LGF+P QIRL++  LR PEG I+LSGPTG+GKSTTL
Sbjct  185  TADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTL  244

Query  243  RSACRVYLDDNQ-GRHLLTIEDPLEGQILGATQTPIICDKSDEDAVKLAWSRAISSAMRL  301
            R+   +YL   +  ++LLT+EDP EG+I+GA QTPIICDK+DE  V+LAW R ++SA+RL
Sbjct  245  RACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRL  304

Query  302  DPDAIMEGEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGIPERMITMGMNADLICDAQL  361
            DPDAI+ GE+RDLIS+++  +AAQTGH+VL+TLH+NSA++IPERMITMG NA+L+ DAQL
Sbjct  305  DPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQL  364

Query  362  LIGMISQRLVPTLCPSCRIPWEKRAPELSDDERDYLERHCNKDSLCSTDNIWFRNHHGCS  421
            L+G+ISQRLV  LCP CRIPW  +  +L+ +ER+YLE+ C+ +++C  +N+ FRN++GC+
Sbjct  365  LVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCP  424

Query  422  ECNHDVIINGRKRGEIGKGLTGRTVIAEVIEPDNRLFQILKTRGKVAARKYWLENMKGIS  481
             C   VII G++ + +GKG++GR+V+AEV+  D+ LF++L  +GK AA+ YW+ +M GI+
Sbjct  425  TCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGIT  484

Query  482  RVEHLLRRINEGLVDPLEADRIIPLDEDERLSI  514
            R  HLL+++N+GLVDPL+AD IIPLDEDE + +
Sbjct  485  RRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQV  517

9) YpsIP31758_3731 in NC_009708


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  461 bits (1737),  Expect = 4e-131, Method: Compositional matrix adjust.
 Identities = 276/498 (56%), Positives = 378/498 (76%), Gaps = 13/498 (2%)

Query  23   LVIDNNRRTDPRVQRWVVEMARIHTG------AKNEFMPLSELNNRRARIADSSQYSICL  76
            L++D++RRTD  VQ+ V+ +   + G      +++E++  SE+  +++   + ++ ++ L
Sbjct  21   LLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQQS---EKGEKGLRL  77

Query  77   KDLT-NISERQKKVLHYFELSRELRASDIHLIIDSQLARVEMRLHGDLEEVDSLPRGEGM  135
             D+  ++S RQ  VL+YF +++++ ASDIH    + L+R+EMR+HG+LE V  L+  +G 
Sbjct  78   EDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMRVHGELETVSELAEEDGK  137

Query  136  ALASTIILSMCDVAETQFYPGREQGGRVKSDFARKVGVFGARYEHRPTADGLYVVMRIID  195
            A A+TIILSMCDV+E QFY+GR Q+GRV + F RKVG+FGARY H PTADGL  VMR+I 
Sbjct  138  AQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTPTADGLHFVMRVIP  197

Query  196  DDGDAVPTLNTLGFMPEQRTLVEKILRIPEGMVILSGPTGAGKSTTLRSFSQMYLDrtgg  255
            DDGD VPTL+ LGF+P Q  L+ + LR+PEGM+ILSGPTGAGKSTTLR+ S++YL RT  
Sbjct  198  DDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTLRACSDLYLKRTRY  257

Query  256  rrrlltIEDPPEGRIKGAIQTPIIADKSRTDVVQQAWNSANASALRLDPDAILNGEMRDL  315
            ++RLLT+EDPPEGRI GAIQTPII DK+    V+ AW+   +SALRLDPDAIL GE+RDL
Sbjct  258  KKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRLDPDAILPGELRDL  317

Query  316  ISIVAAVYAAQTGHLLLTTLHANSAVGILKRMVVLGVSEALIADAQLIVGLISQRLVQTL  375
            ISI+A+++AAQTGHL+L+TLH+NSA +I  RM+ +G + +L+ADAQL+VGLISQRLVQ L
Sbjct  318  ISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQLLVGLISQRLVQVL  377

Query  376  CTYCRIPWKAKAPRLTPEIRMRLERYCCVEGVCRPEQLWFRSEEGCVHCQQRLSISDR--  433
            C  CRIPW  K  +LT E R  LE+YC VEGVC+PE+L FR+EEGC  C++ + I+++  
Sbjct  378  CPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCPTCRKAVIIGGKQV  437

Query  434  -IVSRGVTGRSVVAEVIRPDARFMSLYLAHGPAVARQYWVKSLRGITRVTHLLHQLAAGL  492
              V++GV+GRSVVAEV+R D+ +  L L +G   A+ YW++ + GITR  HLLH+L  GL
Sbjct  438  ATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGITRRIHLLHKLNDGL  497

Query  493  VDPLDADLICPLDEDHLL  510
            VDPLDADLI PLDED+++
Sbjct  498  VDPLDADLIIPLDEDEVM  515

10) SEEH1578_00590 in NC_021811


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  460 bits (1735),  Expect = 6e-131, Method: Compositional matrix adjust.
 Identities = 263/513 (52%), Positives = 388/513 (76%), Gaps = 8/513 (1%)

Query  8    DALLFISRGDT-HEILIETNQRTRPDVQSNLQELLKLYPDINPKVVSLSEL---QEAGQD  63
              LL+ + + T  E+L+++++RT   VQ ++  L+   P++  ++V+ SEL    E +++
Sbjct  7    AVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQ  66

Query  64   EKNRGPKERIIHLKDLA-DVSESEKKVLSYFETARKLGASDIHFLISESIFKVRMRIFGE  122
            + ++G K   ++L D+  +VS  +  VL+YF  A+ +GASDIH     ++ ++ MR+ GE
Sbjct  67   QSEKGEKG--LRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMRVHGE  124

Query  123  LQTVDEDQPALGYSLCATAILSMADVTETSFFPQREQDARLSPQLMRKIGIFGARYSHRP  182
            L+TV E     G +  AT ILSM DVTE  F++ R QD+R++++++RK+G+FGARYSH P
Sbjct  125  LETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTP  184

Query  183  TGDGLIAVMRLIPDDGDKVPTFKQLGFIPEQIRLLNIMLRRPEGKIVLSGPTGSGKSTTL  242
            T+DGL  VMR+IPDDGD VPT+ +LGF+P QIRL++  LR PEG I+LSGPTG+GKSTTL
Sbjct  185  TADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTL  244

Query  243  RSACRVYLDDNQ-GRHLLTIEDPLEGQILGATQTPIICDKSDEDAVKLAWSRAISSAMRL  301
            R+   +YL   +  ++LLT+EDP EG+I+GA QTPIICDK+DE  V+LAW R ++SA+RL
Sbjct  245  RACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRL  304

Query  302  DPDAIMEGEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGIPERMITMGMNADLICDAQL  361
            DPDAI+ GE+RDLIS+++  +AAQTGH+VL+TLH+NSA++IPERMITMG NA+L+ DAQL
Sbjct  305  DPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQL  364

Query  362  LIGMISQRLVPTLCPSCRIPWEKRAPELSDDERDYLERHCNKDSLCSTDNIWFRNHHGCS  421
            L+G+ISQRLV  LCP CRIPW  +  +L+ +ER+YLE+ C+ +++C  +N+ FRN++GC+
Sbjct  365  LVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCP  424

Query  422  ECNHDVIINGRKRGEIGKGLTGRTVIAEVIEPDNRLFQILKTRGKVAARKYWLENMKGIS  481
             C   VII G++ + +GKG++GR+V+AEV+  D+ LF++L  +GK AA+ YW+ +M GI+
Sbjct  425  TCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGIT  484

Query  482  RVEHLLRRINEGLVDPLEADRIIPLDEDERLSI  514
            R  HLL+++N+GLVDPL+AD IIPLDEDE + +
Sbjct  485  RRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQV  517

11) CFSAN002069_23050 in NC_021813


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  460 bits (1735),  Expect = 6e-131, Method: Compositional matrix adjust.
 Identities = 263/513 (52%), Positives = 388/513 (76%), Gaps = 8/513 (1%)

Query  8    DALLFISRGDT-HEILIETNQRTRPDVQSNLQELLKLYPDINPKVVSLSEL---QEAGQD  63
              LL+ + + T  E+L+++++RT   VQ ++  L+   P++  ++V+ SEL    E +++
Sbjct  7    AVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQ  66

Query  64   EKNRGPKERIIHLKDLA-DVSESEKKVLSYFETARKLGASDIHFLISESIFKVRMRIFGE  122
            + ++G K   ++L D+  +VS  +  VL+YF  A+ +GASDIH     ++ ++ MR+ GE
Sbjct  67   QSEKGEKG--LRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMRVHGE  124

Query  123  LQTVDEDQPALGYSLCATAILSMADVTETSFFPQREQDARLSPQLMRKIGIFGARYSHRP  182
            L+TV E     G +  AT ILSM DVTE  F++ R QD+R++++++RK+G+FGARYSH P
Sbjct  125  LETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTP  184

Query  183  TGDGLIAVMRLIPDDGDKVPTFKQLGFIPEQIRLLNIMLRRPEGKIVLSGPTGSGKSTTL  242
            T+DGL  VMR+IPDDGD VPT+ +LGF+P QIRL++  LR PEG I+LSGPTG+GKSTTL
Sbjct  185  TADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTL  244

Query  243  RSACRVYLDDNQ-GRHLLTIEDPLEGQILGATQTPIICDKSDEDAVKLAWSRAISSAMRL  301
            R+   +YL   +  ++LLT+EDP EG+I+GA QTPIICDK+DE  V+LAW R ++SA+RL
Sbjct  245  RACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRL  304

Query  302  DPDAIMEGEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGIPERMITMGMNADLICDAQL  361
            DPDAI+ GE+RDLIS+++  +AAQTGH+VL+TLH+NSA++IPERMITMG NA+L+ DAQL
Sbjct  305  DPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQL  364

Query  362  LIGMISQRLVPTLCPSCRIPWEKRAPELSDDERDYLERHCNKDSLCSTDNIWFRNHHGCS  421
            L+G+ISQRLV  LCP CRIPW  +  +L+ +ER+YLE+ C+ +++C  +N+ FRN++GC+
Sbjct  365  LVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCP  424

Query  422  ECNHDVIINGRKRGEIGKGLTGRTVIAEVIEPDNRLFQILKTRGKVAARKYWLENMKGIS  481
             C   VII G++ + +GKG++GR+V+AEV+  D+ LF++L  +GK AA+ YW+ +M GI+
Sbjct  425  TCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGIT  484

Query  482  RVEHLLRRINEGLVDPLEADRIIPLDEDERLSI  514
            R  HLL+++N+GLVDPL+AD IIPLDEDE + +
Sbjct  485  RRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQV  517

12) SeHA_A0114 in NC_011081


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  460 bits (1735),  Expect = 6e-131, Method: Compositional matrix adjust.
 Identities = 263/513 (52%), Positives = 388/513 (76%), Gaps = 8/513 (1%)

Query  8    DALLFISRGDT-HEILIETNQRTRPDVQSNLQELLKLYPDINPKVVSLSEL---QEAGQD  63
              LL+ + + T  E+L+++++RT   VQ ++  L+   P++  ++V+ SEL    E +++
Sbjct  7    AVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQ  66

Query  64   EKNRGPKERIIHLKDLA-DVSESEKKVLSYFETARKLGASDIHFLISESIFKVRMRIFGE  122
            + ++G K   ++L D+  +VS  +  VL+YF  A+ +GASDIH     ++ ++ MR+ GE
Sbjct  67   QSEKGEKG--LRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMRVHGE  124

Query  123  LQTVDEDQPALGYSLCATAILSMADVTETSFFPQREQDARLSPQLMRKIGIFGARYSHRP  182
            L+TV E     G +  AT ILSM DVTE  F++ R QD+R++++++RK+G+FGARYSH P
Sbjct  125  LETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTP  184

Query  183  TGDGLIAVMRLIPDDGDKVPTFKQLGFIPEQIRLLNIMLRRPEGKIVLSGPTGSGKSTTL  242
            T+DGL  VMR+IPDDGD VPT+ +LGF+P QIRL++  LR PEG I+LSGPTG+GKSTTL
Sbjct  185  TADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTL  244

Query  243  RSACRVYLDDNQ-GRHLLTIEDPLEGQILGATQTPIICDKSDEDAVKLAWSRAISSAMRL  301
            R+   +YL   +  ++LLT+EDP EG+I+GA QTPIICDK+DE  V+LAW R ++SA+RL
Sbjct  245  RACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRL  304

Query  302  DPDAIMEGEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGIPERMITMGMNADLICDAQL  361
            DPDAI+ GE+RDLIS+++  +AAQTGH+VL+TLH+NSA++IPERMITMG NA+L+ DAQL
Sbjct  305  DPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQL  364

Query  362  LIGMISQRLVPTLCPSCRIPWEKRAPELSDDERDYLERHCNKDSLCSTDNIWFRNHHGCS  421
            L+G+ISQRLV  LCP CRIPW  +  +L+ +ER+YLE+ C+ +++C  +N+ FRN++GC+
Sbjct  365  LVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCP  424

Query  422  ECNHDVIINGRKRGEIGKGLTGRTVIAEVIEPDNRLFQILKTRGKVAARKYWLENMKGIS  481
             C   VII G++ + +GKG++GR+V+AEV+  D+ LF++L  +GK AA+ YW+ +M GI+
Sbjct  425  TCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGIT  484

Query  482  RVEHLLRRINEGLVDPLEADRIIPLDEDERLSI  514
            R  HLL+++N+GLVDPL+AD IIPLDEDE + +
Sbjct  485  RRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQV  517

13) pilQ in NC_017718


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  460 bits (1735),  Expect = 6e-131, Method: Compositional matrix adjust.
 Identities = 263/513 (52%), Positives = 388/513 (76%), Gaps = 8/513 (1%)

Query  8    DALLFISRGDT-HEILIETNQRTRPDVQSNLQELLKLYPDINPKVVSLSEL---QEAGQD  63
              LL+ + + T  E+L+++++RT   VQ ++  L+   P++  ++V+ SEL    E +++
Sbjct  7    AVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQ  66

Query  64   EKNRGPKERIIHLKDLA-DVSESEKKVLSYFETARKLGASDIHFLISESIFKVRMRIFGE  122
            + ++G K   ++L D+  +VS  +  VL+YF  A+ +GASDIH     ++ ++ MR+ GE
Sbjct  67   QSEKGEKG--LRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMRVHGE  124

Query  123  LQTVDEDQPALGYSLCATAILSMADVTETSFFPQREQDARLSPQLMRKIGIFGARYSHRP  182
            L+TV E     G +  AT ILSM DVTE  F++ R QD+R++++++RK+G+FGARYSH P
Sbjct  125  LETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTP  184

Query  183  TGDGLIAVMRLIPDDGDKVPTFKQLGFIPEQIRLLNIMLRRPEGKIVLSGPTGSGKSTTL  242
            T+DGL  VMR+IPDDGD VPT+ +LGF+P QIRL++  LR PEG I+LSGPTG+GKSTTL
Sbjct  185  TADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTL  244

Query  243  RSACRVYLDDNQ-GRHLLTIEDPLEGQILGATQTPIICDKSDEDAVKLAWSRAISSAMRL  301
            R+   +YL   +  ++LLT+EDP EG+I+GA QTPIICDK+DE  V+LAW R ++SA+RL
Sbjct  245  RACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRL  304

Query  302  DPDAIMEGEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGIPERMITMGMNADLICDAQL  361
            DPDAI+ GE+RDLIS+++  +AAQTGH+VL+TLH+NSA++IPERMITMG NA+L+ DAQL
Sbjct  305  DPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQL  364

Query  362  LIGMISQRLVPTLCPSCRIPWEKRAPELSDDERDYLERHCNKDSLCSTDNIWFRNHHGCS  421
            L+G+ISQRLV  LCP CRIPW  +  +L+ +ER+YLE+ C+ +++C  +N+ FRN++GC+
Sbjct  365  LVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCP  424

Query  422  ECNHDVIINGRKRGEIGKGLTGRTVIAEVIEPDNRLFQILKTRGKVAARKYWLENMKGIS  481
             C   VII G++ + +GKG++GR+V+AEV+  D+ LF++L  +GK AA+ YW+ +M GI+
Sbjct  425  TCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGIT  484

Query  482  RVEHLLRRINEGLVDPLEADRIIPLDEDERLSI  514
            R  HLL+++N+GLVDPL+AD IIPLDEDE + +
Sbjct  485  RRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQV  517

14) pilQ in NC_017675


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  460 bits (1735),  Expect = 6e-131, Method: Compositional matrix adjust.
 Identities = 263/513 (52%), Positives = 388/513 (76%), Gaps = 8/513 (1%)

Query  8    DALLFISRGDT-HEILIETNQRTRPDVQSNLQELLKLYPDINPKVVSLSEL---QEAGQD  63
              LL+ + + T  E+L+++++RT   VQ ++  L+   P++  ++V+ SEL    E +++
Sbjct  7    AVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQ  66

Query  64   EKNRGPKERIIHLKDLA-DVSESEKKVLSYFETARKLGASDIHFLISESIFKVRMRIFGE  122
            + ++G K   ++L D+  +VS  +  VL+YF  A+ +GASDIH     ++ ++ MR+ GE
Sbjct  67   QSEKGEKG--LRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMRVHGE  124

Query  123  LQTVDEDQPALGYSLCATAILSMADVTETSFFPQREQDARLSPQLMRKIGIFGARYSHRP  182
            L+TV E     G +  AT ILSM DVTE  F++ R QD+R++++++RK+G+FGARYSH P
Sbjct  125  LETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTP  184

Query  183  TGDGLIAVMRLIPDDGDKVPTFKQLGFIPEQIRLLNIMLRRPEGKIVLSGPTGSGKSTTL  242
            T+DGL  VMR+IPDDGD VPT+ +LGF+P QIRL++  LR PEG I+LSGPTG+GKSTTL
Sbjct  185  TADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTL  244

Query  243  RSACRVYLDDNQ-GRHLLTIEDPLEGQILGATQTPIICDKSDEDAVKLAWSRAISSAMRL  301
            R+   +YL   +  ++LLT+EDP EG+I+GA QTPIICDK+DE  V+LAW R ++SA+RL
Sbjct  245  RACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRL  304

Query  302  DPDAIMEGEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGIPERMITMGMNADLICDAQL  361
            DPDAI+ GE+RDLIS+++  +AAQTGH+VL+TLH+NSA++IPERMITMG NA+L+ DAQL
Sbjct  305  DPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQL  364

Query  362  LIGMISQRLVPTLCPSCRIPWEKRAPELSDDERDYLERHCNKDSLCSTDNIWFRNHHGCS  421
            L+G+ISQRLV  LCP CRIPW  +  +L+ +ER+YLE+ C+ +++C  +N+ FRN++GC+
Sbjct  365  LVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCP  424

Query  422  ECNHDVIINGRKRGEIGKGLTGRTVIAEVIEPDNRLFQILKTRGKVAARKYWLENMKGIS  481
             C   VII G++ + +GKG++GR+V+AEV+  D+ LF++L  +GK AA+ YW+ +M GI+
Sbjct  425  TCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGIT  484

Query  482  RVEHLLRRINEGLVDPLEADRIIPLDEDERLSI  514
            R  HLL+++N+GLVDPL+AD IIPLDEDE + +
Sbjct  485  RRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQV  517

15) EKO11_4733 in NC_016904


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  458 bits (1726),  Expect = 3e-130, Method: Compositional matrix adjust.
 Identities = 262/513 (52%), Positives = 387/513 (76%), Gaps = 8/513 (1%)

Query  8    DALLFISRGDT-HEILIETNQRTRPDVQSNLQELLNLYPDIIPKVVSLSEL---QEAGQD  63
              LL+ + + T  E+L+++++RT   VQ ++  L++  P++  ++V+ SEL    E +++
Sbjct  7    AVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQ  66

Query  64   DENKGPKERIIHLKDLA-DVSESEKKVLSYFETARKLGASDIHFLISESIFKVRMRIFGE  122
            + +KG K   ++L D+  +VS  +  VL+YF  A+ +GASDIH     ++ ++ MR+ GE
Sbjct  67   QSEKGEKG--LRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMRVHGE  124

Query  123  LQTVDEDQPALGYSLCATAILSMADVTETSFFPQREQDARLSPQLMRKIGIFGARYSHRP  182
            L+TV E     G +  AT ILSM DVTE  F++ R QD+R++++++RK+G+FGARYSH P
Sbjct  125  LETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTP  184

Query  183  TGDGLIAVMRLIPDDGDKVPTFKQLGFIPEQIRLLNVMLRRPEGKIVLSGPTGSGKSTTL  242
            T+DGL  VMR+IPDDGD VPT+ +LGF+P QIRL++  LR PEG I+LSGPTG+GKSTTL
Sbjct  185  TADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTL  244

Query  243  RSACRVYLDDNQ-GRHLLTIEDPLEGQILGATQTPIICDKSDEEAVKLAWSRAISSAMRL  301
            R+   +YL   +  ++LLT+EDP EG+I+GA QTPIICDK+DE  V+LAW R ++SA+RL
Sbjct  245  RACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRL  304

Query  302  DPDAIMEGEMRDLVSMMSTTYAAQTGHIVLTTLHTNSALGIPERMITMGMNADLICDAQL  361
            DPDAI+ GE+RDL+S+++  +AAQTGH+VL+TLH+NSA++IPERMITMG NA+L+ DAQL
Sbjct  305  DPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQL  364

Query  362  LIGMISQRLVPTLCPSCRIPWEKRVPELSEDDRAYLERHCNKDSLCSTDNIWFRNPHGCS  421
            L+G+ISQRLV  LCP CRIPW  +  +L+ ++R YLE+ C+ +++C  +N+ FRN +GC+
Sbjct  365  LVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCP  424

Query  422  DCNHDVIINGRKRGEIGKGLTGRTVIAEVIEPDNRLFQILKTRGKVAARKYWLENMHGIS  481
             C   VII G++ + +GKG++GR+V+AEV+  D+ LF++L  +GK AA+ YW+ +M GI+
Sbjct  425  TCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGIT  484

Query  482  RVEHLLRRINEGLVDPLEADRIIPLDEDERLSI  514
            R  HLL+++N+GLVDPL+AD IIPLDEDE + +
Sbjct  485  RRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQV  517

16) O3K_25702 in NC_018659


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  458 bits (1726),  Expect = 3e-130, Method: Compositional matrix adjust.
 Identities = 262/513 (52%), Positives = 387/513 (76%), Gaps = 8/513 (1%)

Query  8    DALLFISRGDT-HEILIETNQRTRPDVQSNLQELLNLYPDIIPKVVSLSEL---QEAGQD  63
              LL+ + + T  E+L+++++RT   VQ ++  L++  P++  ++V+ SEL    E +++
Sbjct  7    AVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQ  66

Query  64   DENKGPKERIIHLKDLA-DVSESEKKVLSYFETARKLGASDIHFLISESIFKVRMRIFGE  122
            + +KG K   ++L D+  +VS  +  VL+YF  A+ +GASDIH     ++ ++ MR+ GE
Sbjct  67   QSEKGEKG--LRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMRVHGE  124

Query  123  LQTVDEDQPALGYSLCATAILSMADVTETSFFPQREQDARLSPQLMRKIGIFGARYSHRP  182
            L+TV E     G +  AT ILSM DVTE  F++ R QD+R++++++RK+G+FGARYSH P
Sbjct  125  LETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTP  184

Query  183  TGDGLIAVMRLIPDDGDKVPTFKQLGFIPEQIRLLNVMLRRPEGKIVLSGPTGSGKSTTL  242
            T+DGL  VMR+IPDDGD VPT+ +LGF+P QIRL++  LR PEG I+LSGPTG+GKSTTL
Sbjct  185  TADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTL  244

Query  243  RSACRVYLDDNQ-GRHLLTIEDPLEGQILGATQTPIICDKSDEEAVKLAWSRAISSAMRL  301
            R+   +YL   +  ++LLT+EDP EG+I+GA QTPIICDK+DE  V+LAW R ++SA+RL
Sbjct  245  RACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRL  304

Query  302  DPDAIMEGEMRDLVSMMSTTYAAQTGHIVLTTLHTNSALGIPERMITMGMNADLICDAQL  361
            DPDAI+ GE+RDL+S+++  +AAQTGH+VL+TLH+NSA++IPERMITMG NA+L+ DAQL
Sbjct  305  DPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQL  364

Query  362  LIGMISQRLVPTLCPSCRIPWEKRVPELSEDDRAYLERHCNKDSLCSTDNIWFRNPHGCS  421
            L+G+ISQRLV  LCP CRIPW  +  +L+ ++R YLE+ C+ +++C  +N+ FRN +GC+
Sbjct  365  LVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCP  424

Query  422  DCNHDVIINGRKRGEIGKGLTGRTVIAEVIEPDNRLFQILKTRGKVAARKYWLENMHGIS  481
             C   VII G++ + +GKG++GR+V+AEV+  D+ LF++L  +GK AA+ YW+ +M GI+
Sbjct  425  TCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGIT  484

Query  482  RVEHLLRRINEGLVDPLEADRIIPLDEDERLSI  514
            R  HLL+++N+GLVDPL+AD IIPLDEDE + +
Sbjct  485  RRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQV  517

17) pilQ in NC_017642


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  458 bits (1726),  Expect = 3e-130, Method: Compositional matrix adjust.
 Identities = 262/513 (52%), Positives = 387/513 (76%), Gaps = 8/513 (1%)

Query  8    DALLFISRGDT-HEILIETNQRTRPDVQSNLQELLNLYPDIIPKVVSLSEL---QEAGQD  63
              LL+ + + T  E+L+++++RT   VQ ++  L++  P++  ++V+ SEL    E +++
Sbjct  7    AVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQ  66

Query  64   DENKGPKERIIHLKDLA-DVSESEKKVLSYFETARKLGASDIHFLISESIFKVRMRIFGE  122
            + +KG K   ++L D+  +VS  +  VL+YF  A+ +GASDIH     ++ ++ MR+ GE
Sbjct  67   QSEKGEKG--LRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMRVHGE  124

Query  123  LQTVDEDQPALGYSLCATAILSMADVTETSFFPQREQDARLSPQLMRKIGIFGARYSHRP  182
            L+TV E     G +  AT ILSM DVTE  F++ R QD+R++++++RK+G+FGARYSH P
Sbjct  125  LETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTP  184

Query  183  TGDGLIAVMRLIPDDGDKVPTFKQLGFIPEQIRLLNVMLRRPEGKIVLSGPTGSGKSTTL  242
            T+DGL  VMR+IPDDGD VPT+ +LGF+P QIRL++  LR PEG I+LSGPTG+GKSTTL
Sbjct  185  TADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTL  244

Query  243  RSACRVYLDDNQ-GRHLLTIEDPLEGQILGATQTPIICDKSDEEAVKLAWSRAISSAMRL  301
            R+   +YL   +  ++LLT+EDP EG+I+GA QTPIICDK+DE  V+LAW R ++SA+RL
Sbjct  245  RACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRL  304

Query  302  DPDAIMEGEMRDLVSMMSTTYAAQTGHIVLTTLHTNSALGIPERMITMGMNADLICDAQL  361
            DPDAI+ GE+RDL+S+++  +AAQTGH+VL+TLH+NSA++IPERMITMG NA+L+ DAQL
Sbjct  305  DPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQL  364

Query  362  LIGMISQRLVPTLCPSCRIPWEKRVPELSEDDRAYLERHCNKDSLCSTDNIWFRNPHGCS  421
            L+G+ISQRLV  LCP CRIPW  +  +L+ ++R YLE+ C+ +++C  +N+ FRN +GC+
Sbjct  365  LVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCP  424

Query  422  DCNHDVIINGRKRGEIGKGLTGRTVIAEVIEPDNRLFQILKTRGKVAARKYWLENMHGIS  481
             C   VII G++ + +GKG++GR+V+AEV+  D+ LF++L  +GK AA+ YW+ +M GI+
Sbjct  425  TCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGIT  484

Query  482  RVEHLLRRINEGLVDPLEADRIIPLDEDERLSI  514
            R  HLL+++N+GLVDPL+AD IIPLDEDE + +
Sbjct  485  RRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQV  517

18) pilQ in NC_017637


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  458 bits (1726),  Expect = 3e-130, Method: Compositional matrix adjust.
 Identities = 262/513 (52%), Positives = 387/513 (76%), Gaps = 8/513 (1%)

Query  8    DALLFISRGDT-HEILIETNQRTRPDVQSNLQELLNLYPDIIPKVVSLSEL---QEAGQD  63
              LL+ + + T  E+L+++++RT   VQ ++  L++  P++  ++V+ SEL    E +++
Sbjct  7    AVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQ  66

Query  64   DENKGPKERIIHLKDLA-DVSESEKKVLSYFETARKLGASDIHFLISESIFKVRMRIFGE  122
            + +KG K   ++L D+  +VS  +  VL+YF  A+ +GASDIH     ++ ++ MR+ GE
Sbjct  67   QSEKGEKG--LRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMRVHGE  124

Query  123  LQTVDEDQPALGYSLCATAILSMADVTETSFFPQREQDARLSPQLMRKIGIFGARYSHRP  182
            L+TV E     G +  AT ILSM DVTE  F++ R QD+R++++++RK+G+FGARYSH P
Sbjct  125  LETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTP  184

Query  183  TGDGLIAVMRLIPDDGDKVPTFKQLGFIPEQIRLLNVMLRRPEGKIVLSGPTGSGKSTTL  242
            T+DGL  VMR+IPDDGD VPT+ +LGF+P QIRL++  LR PEG I+LSGPTG+GKSTTL
Sbjct  185  TADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTL  244

Query  243  RSACRVYLDDNQ-GRHLLTIEDPLEGQILGATQTPIICDKSDEEAVKLAWSRAISSAMRL  301
            R+   +YL   +  ++LLT+EDP EG+I+GA QTPIICDK+DE  V+LAW R ++SA+RL
Sbjct  245  RACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRL  304

Query  302  DPDAIMEGEMRDLVSMMSTTYAAQTGHIVLTTLHTNSALGIPERMITMGMNADLICDAQL  361
            DPDAI+ GE+RDL+S+++  +AAQTGH+VL+TLH+NSA++IPERMITMG NA+L+ DAQL
Sbjct  305  DPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQL  364

Query  362  LIGMISQRLVPTLCPSCRIPWEKRVPELSEDDRAYLERHCNKDSLCSTDNIWFRNPHGCS  421
            L+G+ISQRLV  LCP CRIPW  +  +L+ ++R YLE+ C+ +++C  +N+ FRN +GC+
Sbjct  365  LVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCP  424

Query  422  DCNHDVIINGRKRGEIGKGLTGRTVIAEVIEPDNRLFQILKTRGKVAARKYWLENMHGIS  481
             C   VII G++ + +GKG++GR+V+AEV+  D+ LF++L  +GK AA+ YW+ +M GI+
Sbjct  425  TCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGIT  484

Query  482  RVEHLLRRINEGLVDPLEADRIIPLDEDERLSI  514
            R  HLL+++N+GLVDPL+AD IIPLDEDE + +
Sbjct  485  RRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQV  517

19) WFL_23665 in NC_017665


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  458 bits (1726),  Expect = 3e-130, Method: Compositional matrix adjust.
 Identities = 262/513 (52%), Positives = 387/513 (76%), Gaps = 8/513 (1%)

Query  8    DALLFISRGDT-HEILIETNQRTRPDVQSNLQELLNLYPDIIPKVVSLSEL---QEAGQD  63
              LL+ + + T  E+L+++++RT   VQ ++  L++  P++  ++V+ SEL    E +++
Sbjct  7    AVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQ  66

Query  64   DENKGPKERIIHLKDLA-DVSESEKKVLSYFETARKLGASDIHFLISESIFKVRMRIFGE  122
            + +KG K   ++L D+  +VS  +  VL+YF  A+ +GASDIH     ++ ++ MR+ GE
Sbjct  67   QSEKGEKG--LRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPGLTRIEMRVHGE  124

Query  123  LQTVDEDQPALGYSLCATAILSMADVTETSFFPQREQDARLSPQLMRKIGIFGARYSHRP  182
            L+TV E     G +  AT ILSM DVTE  F++ R QD+R++++++RK+G+FGARYSH P
Sbjct  125  LETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTP  184

Query  183  TGDGLIAVMRLIPDDGDKVPTFKQLGFIPEQIRLLNVMLRRPEGKIVLSGPTGSGKSTTL  242
            T+DGL  VMR+IPDDGD VPT+ +LGF+P QIRL++  LR PEG I+LSGPTG+GKSTTL
Sbjct  185  TADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTL  244

Query  243  RSACRVYLDDNQ-GRHLLTIEDPLEGQILGATQTPIICDKSDEEAVKLAWSRAISSAMRL  301
            R+   +YL   +  ++LLT+EDP EG+I+GA QTPIICDK+DE  V+LAW R ++SA+RL
Sbjct  245  RACSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRL  304

Query  302  DPDAIMEGEMRDLVSMMSTTYAAQTGHIVLTTLHTNSALGIPERMITMGMNADLICDAQL  361
            DPDAI+ GE+RDL+S+++  +AAQTGH+VL+TLH+NSA++IPERMITMG NA+L+ DAQL
Sbjct  305  DPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQL  364

Query  362  LIGMISQRLVPTLCPSCRIPWEKRVPELSEDDRAYLERHCNKDSLCSTDNIWFRNPHGCS  421
            L+G+ISQRLV  LCP CRIPW  +  +L+ ++R YLE+ C+ +++C  +N+ FRN +GC+
Sbjct  365  LVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCP  424

Query  422  DCNHDVIINGRKRGEIGKGLTGRTVIAEVIEPDNRLFQILKTRGKVAARKYWLENMHGIS  481
             C   VII G++ + +GKG++GR+V+AEV+  D+ LF++L  +GK AA+ YW+ +M GI+
Sbjct  425  TCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGIT  484

Query  482  RVEHLLRRINEGLVDPLEADRIIPLDEDERLSI  514
            R  HLL+++N+GLVDPL+AD IIPLDEDE + +
Sbjct  485  RRIHLLHKLNDGLVDPLDADLIIPLDEDEVMQV  517

20) EJP617_06750 in NC_017445


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  453 bits (1707),  Expect = 9e-129, Method: Compositional matrix adjust.
 Identities = 267/501 (54%), Positives = 364/501 (73%), Gaps = 7/501 (1%)

Query  21   MTLHIDNNRRQDPRIQRWVMDIVRVHPTARSEFVTLSELNRRRELAERQGYDLSQGISET  80
            + L +D++RR D  +Q+ VM ++  +P     +VT SEL R  E+A +Q+    +G+   
Sbjct  19   LELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQQSEKGEKGLRLE  78

Query  81   DLKSRDVSISQEKLLSYFRLGEQLGASDIHIEISEDRKLTIIQLRIHGELEVVDELKHTE  140
            D+K ++VS  Q  +L+YF ++ ++GASDIH     +  LT I++R+HGELE V EL + +
Sbjct  79   DIK-KEVSSRQGDVLNYFMVAKDIGASDIHGTTRPG--LTRIEMRVHGELETVSELAEED  135

Query  141  GMTLASTGYISMCDVHEQSFFAGREQSGRIDAKFARQAGLFGARYEHRPTPDGLIVVMRL  200
            G + A+T  +SMCDV E  F+AGR Q GR+ AKF R+ GLFGARY H PT+DGL  VMR+
Sbjct  136  GKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTPTADGLHFVMRV  195

Query  201  IPDDGDHVPTLEQLGFLPEQIRHIQQILRLPEGMVILTGPTGSGKSTTLRVCSRLWLDRT  260
            IPDDGD VPTLE+LGFLP QIR I++ LRLPEGM+IL+GPTG+GKSTTLR CS L L RT
Sbjct  196  IPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTLRACSDLYLKRT  255

Query  261  AGKKRLLTLENPPEGRIVGAIQTPVMPVDNSPEAISRAWTNANASALRLDPDAILNGEMR  320
              KKRLLT+E+PPEGRIVGAIQTP++        +  AW    +SALRLDPDAIL GE+R
Sbjct  256  RYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRLDPDAILPGELR  315

Query  321  DLHSLNAGIHASETGHKMMTTLHTNSAIGALPRMENFGVDRRLIADATLITGLVGQRLVP  380
            DL S+ AGI A++TGH +++TLH+NSA++   RM   G +  L+ADA L+ GL++QRLV 
Sbjct  316  DLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQLLVGLISQRLVQ  375

Query  381  LLCEHCRIPWLLKATRLDADTRTRLEKYCTLEGICHPEQLRFRNHEGCEHCRKTIPQTGR  440
            +LC +CRIPW +K  +L ++ R  LEKYC++EG+C+PE+L+FRN+EGC  CRK++   G+
Sbjct  376  VLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCPTCRKAVIIGGK  435

Query  441  ---IVSRGVTGRTVVADVIRPDARQMQLWLSHGTAVARQYWVNQ-GGITRRQHLLMHLSA  496
                V++GV+GR+VVA+V+R D+   +L L +G   A+ YW+ + GGITRR HLL  L+ 
Sbjct  436  QVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGITRRIHLLHKLND  495

Query  497  GRVDPLEGDLICPLDEDEIMQ  517
            G VDPL++DLI PLDEDE+MQ
Sbjct  496  GLVDPLDADLIIPLDEDEVMQ  516

21) SPAB_05360 in NC_010102


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  413 bits (1556),  Expect = 9e-117, Method: Compositional matrix adjust.
 Identities = 261/508 (52%), Positives = 368/508 (73%), Gaps = 8/508 (1%)

Query  15   QHPSGGV-TLLIDGNRRKDPGIQRWVMDVTRTWGDAKTEFVTLSELNRRREVAERQGRGL  73
            ++P   +  LL+D++RR D ++Q+ VM +     +    +VT SEL R  E+A +Q+   
Sbjct  12   HNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQQSEKG  71

Query  74   NQGVSEADLSNRDVSVSQDKVISYMRLGNDFNASDIHMEISGDRKICIVQLRIHGelevv  133
            ++G+   D+ +++VS  Q+ V++Y  +++D+ ASDIH     +  +  +++R+HGELE V
Sbjct  72   EKGLRLEDI-KKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPG--LTRIEMRVHGELETV  128

Query  134  devkdveGMTLASTSYLSMCDVREQSFFAGREQSGRIDAKFARRAGLYGARYEHRPTPDG  193
             E+ + +G + A+T  LSMCDV E  F+AGR Q GR+ AKF R+ GL+GARY H PT+DG
Sbjct  129  SELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTPTADG  188

Query  194  LIVVMRLIPDDGDNIPTLPQLGFLPEQIKLIMQILRMPEGMTLLTGPTGSGKSATLRVFS  253
            L  VMR+IPDDGD +PTL +LGFLP QI+LI + LR+PEGM +L+GPTG+GKS+TLR  S
Sbjct  189  LHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTLRACS  248

Query  254  DIWlkltggkkrlltlENPPEGRIPGGIQTPVMPEDNSPEAISRAWSNGNASALRLDPDA  313
            D+ LK T  KKRLLT+E+PPEGRI G+IQTP++ +      +  AW    +SALRLDPDA
Sbjct  249  DLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRLDPDA  308

Query  314  ILNGEIRDLYSLLAAIFASETGHLVLSTLHTQSPIGSLRRMEHFGIDRHLLADAALITGL  373
            IL GE+RDL S+LA+IFA++TGHLVLSTLH++S+++   RM   G +  L+ADA L+ GL
Sbjct  309  ILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQLLVGL  368

Query  374  IGQRLVPLLCEHCRVPWEVKVPELDEETRARLEKYCSVAGLCEPKNLFFRNYEGCEHCRK  433
            I+QRLV +LC +CR+PW VK  +L  E R  LEKYCSV G+C+P NL FRN EGC  CRK
Sbjct  369  ISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCPTCRK  428

Query  434  TVPLTGR---IISRGVTGRTAIAEVVRTDARLMQLWLSHGPSVARKYWVNQ-GGITRRMH  489
            +V + G+    +++GV+GR+ +AEVVRTD+ L +L L +G   A+ YW+ + GGITRR+H
Sbjct  429  AVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGITRRIH  488

Query  490  LLRYLAEGLVDPLEGDLICPLDEDDIMD  517
            LL+ L +GLVDPL++DLI PLDED++M+
Sbjct  489  LLHKLNDGLVDPLDADLIIPLDEDEVMQ  516

22) ECL_00419 in NC_014121


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  411 bits (1547),  Expect = 4e-116, Method: Compositional matrix adjust.
 Identities = 256/508 (51%), Positives = 368/508 (73%), Gaps = 8/508 (1%)

Query  15   QHPSGGV-TLLIDGNRRKEPAIQRWVMDVTREYPTAKTEFVTLSELNRRREVAERQGLAL  73
            ++P   +  LL+D++RR + A+Q+ VM +  E P     +VT SEL R  E+A +Q+   
Sbjct  12   HNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQQSEKG  71

Query  74   SRSVSESDLNSRDISVSQDKVISYMKLGNEFSASDIHIEISADRKLSIVQLRIHGelevv  133
             +++   D++ +++S  Q+ V++Y  ++++++ASDIH    ++  L+ +++R+HGELE V
Sbjct  72   EKGLRLEDIK-KEVSSRQGDVLNYFMVAKDIGASDIHGTTRPG--LTRIEMRVHGELETV  128

Query  134  devkdveGMTLASTSYLSMCDVREQSFFAGREQSGRIDAKFARRAGLYGARYEHRPTPDG  193
             E+ + +G + A+T  LSMCDV E  F+AGR Q GR+ AKF R+ GL+GARY H PT+DG
Sbjct  129  SELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTPTADG  188

Query  194  LIVVMRLIPDDGDNIPGLPQLGFLPEQITLIMQILRLPEGMVLLTGPTGSGKSATLRVFS  253
            L  VMR+IPDDGD +P L +LGFLP QI LI + LRLPEGM++L+GPTG+GKS+TLR  S
Sbjct  189  LHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTLRACS  248

Query  254  DIWlkltggkkrlltlENPPEGRIPGAIQTPVMPADNSPEAISRAWSNANASALRLDPDA  313
            D+ LK T  KKRLLT+E+PPEGRI GAIQTP++        +  AW    +SALRLDPDA
Sbjct  249  DLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRLDPDA  308

Query  314  ILNGEMRDLYSLIAAIYASETGHALFSTLHTQSPIGSLRRMEHFGIDRHLLADAALITGL  373
            IL GE+RDL S++A+I+A++TGH ++STLH++S+++   RM   G +  L+ADA L+ GL
Sbjct  309  ILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQLLVGL  368

Query  374  IGQRLVPLLCEKCRIPWQVKAPELDGETRARLEKYCTVEGVCDTGKLFFRNHEGCSHCQK  433
            I+QRLV +LC  CRIPW VK  +L  E R  LEKYC+VEGVC+  +L FRN+EGC+ C+K
Sbjct  369  ISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCPTCRK  428

Query  434  TVPLTGR---IVSRGVTGRTAIAEVVRTDARLMQLWLSHGPAVARQYWVNQ-GGITRRMH  489
            +V + G+    V++GV+GR+ +AEVVRTD+ L +L L +G   A+ YW+ + GGITRR+H
Sbjct  429  AVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGITRRIH  488

Query  490  LLRYLAQGRVDPVEGDLICPLDEDDIMQ  517
            LL+ L +G VDP+++DLI PLDED++MQ
Sbjct  489  LLHKLNDGLVDPLDADLIIPLDEDEVMQ  516

23) PAGR_g3870 in NC_017554


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  409 bits (1540),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 254/515 (50%), Positives = 365/515 (71%), Gaps = 12/515 (2%)

Query  15   HHPVQGV-TLLIDKNRRQDPAIQRWAMDSAKQYPGARTEFVSLSEL----NQRRESAAAL  69
            H+P   +  LL+D +RR D A+Q+  M    + PG    +V+ SEL    +  R+ +   
Sbjct  12   HNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQQSEKG  71

Query  70   GPGVTEDDLSTKDVSRSQDKVLSYFRLANELNASDIHLEISADRKLTVIQLRIHGELEVI  129
              G+  +D+  K+VS  Q+ VL+YF +A+++ ASDIH   ++   LT I++R+HGELE +
Sbjct  72   EKGLRLEDI-KKEVSSRQGDVLNYFMVAKDIGASDIH--GTTRPGLTRIEMRVHGELETV  128

Query  130  DELTDEEGTTLASTVYISMCDVREQSFVAGREQSGRVSSKFARQAGLFGARYEHRPTPDG  189
             EL++E+G + A+T+ +SMCDV E  F AGR Q GRV++KF R+ GLFGARY H PT+DG
Sbjct  129  SELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTPTADG  188

Query  190  LYLVMRMIPDDSKNIPTLPQLGFLAEQIKIITQILRLPSGMVLVTGPTGAGKSATLRVLS  249
            L +VMR+IPDD+  +PTL +LGFL+ QI++I + LRLP GM++++GPTGAGKS+TLR  S
Sbjct  189  LHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTLRACS  248

Query  250  DIWltltggkkrlltlENPPEGLIPGAIQTPVMPDDNTPEAISRAWNNANASALRLDPDA  309
            D+ L  T  KKRLLT+E+PPEG I GAIQTP++ D      +  AW+   +SALRLDPDA
Sbjct  249  DLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRLDPDA  308

Query  310  ILNGEMRDFYSIMAGIYGTETGHIFMSTQHTLSAIGALSRMEHFGIKRQLLADASLITGL  369
            IL GE+RD+ SI+AGI++++TGH+ +ST H+ SA++   RM   G +  L+ADA L+ GL
Sbjct  309  ILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQLLVGL  368

Query  370  IGQRLVPLLCDNCKISWADKLPELDSDTRERLEKYCTVKGGCRPEQLFFRNPEGCDRCRK  429
            I+QRLV +LC +C+I+W+ K  +L ++ RE LEKYC+V G C+PE+L FRN EGC  CRK
Sbjct  369  ISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCPTCRK  428

Query  430  VIPVTKR---VVSKGITGRTAVVEVVRTDAMMMQLWLNQGAAVARQYWV-NKGGITRVMH  485
             + +  +    V+KG++GR+ V EVVRTD+ + +L L+QG   A+ YW+ + GGITR +H
Sbjct  429  AVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGITRRIH  488

Query  486  LLRYLAEGRVDPLEGDLVCPLDEDELMRCEVPHVA  520
            LL+ L +G VDPL++DL+ PLDEDE+M+    +VA
Sbjct  489  LLHKLNDGLVDPLDADLIIPLDEDEVMQVVSDQVA  523

24) pilQ in NC_016816


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  405 bits (1525),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 249/517 (49%), Positives = 366/517 (71%), Gaps = 16/517 (3%)

Query  15   QHPTQGV-TLLIDKNRRQDPAIQRWAVDMAKQHPG------ARTEFVTLSELSQRRESAV  67
            ++P   +  LL+D +RR D A+Q+  + +  ++PG      +R+E++  SE+++++    
Sbjct  12   HNPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQQSEKG  71

Query  68   AQGLVVTENDLDKKDVSRSQDKVLSYFSLAYELNSSDIHFEISADRKLTIIRMRIHGELE  127
             +GL + +    KK+VS  Q+ VL+YF +A ++ +SDIH    ++  LT I MR+HGELE
Sbjct  72   EKGLRLEDI---KKEVSSRQGDVLNYFMVAKDIGASDIHGTTRPG--LTRIEMRVHGELE  126

Query  128  VIDELTDEEGITLVSTVYISMCDVREQSFYMGREQSGRVDAKFARQAGLYGARYEHRATP  187
             + EL++E+G +  +T+ +SMCDV E  FY GR Q GRV AKF R+ GL+GARY H +T+
Sbjct  127  TVSELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTPTA  186

Query  188  DGLFVVMRMIPDDSKNMPTLPQLGFLPEQIGLVMQLLRLPSGMVLLTGPTGSGKSASMRS  247
            DGL  VMR+IPDD+  +PTL +LGFLP QI L+ + LRLP GM++L+GPTG+GKS+++R+
Sbjct  187  DGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTLRA  246

Query  248  FCDLWMkltggkkllltlENPTEGLMPGAIQTQVMPDDNSPEAISRAWNNGNASSLRLDP  307
              DL +K T  KK LLT+E+P EG + GAIQT ++ D      +  AW+   +S+LRLDP
Sbjct  247  CSDLYLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRLDP  306

Query  308  DALGTGEMRDLYSILAAIYACETGHLFFSTLHTKTPIGALRRMELFGIDRRLLADPSLIV  367
            DA+  GE+RDL SILA+I+A +TGHL +STLH++++++   RM   G +  L+AD+ L+V
Sbjct  307  DAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQLLV  366

Query  368  GLIGQRLVPLLCESCKIPWSGKMPELDTETRERLEKYCNVEGVCTPQQLFFRNPEGCECC  427
            GLI+QRLV +LC  C+IPWS K  +L TE RE LEKYC+VEGVC P++L FRN EGC  C
Sbjct  367  GLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCPTC  426

Query  428  RKVIPFNGR---VVSKGVTGRAAVAEVMRTDARMMKIWLSDGPDAARLDWIK-RGGISRL  483
            RK + + G+    V+KGV+GR+ VAEV+RTD+ + ++ L +G +AA+  WI+  GGI+R 
Sbjct  427  RKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGITRR  486

Query  484  MHLMRYLAEGRVDPLEADLICPLDEDEHLHSEASHVA  520
            +HL++ L +G VDPL+ADLI PLDEDE ++  + +VA
Sbjct  487  IHLLHKLNDGLVDPLDADLIIPLDEDEVMQVVSDQVA  523

25) Ser39006_1485 in NC_022268


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  404 bits (1521),  Expect = 4e-114, Method: Compositional matrix adjust.
 Identities = 234/498 (47%), Positives = 352/498 (71%), Gaps = 10/498 (2%)

Query  25   LVIDTNRRTDPLVQRWVMDMVSAFPMAVKEFVSLSEL----NTRRERQANAEDSVMPRGV  80
            L++D++RRTD  VQ+ VM ++   P     +V+ SEL    +  R++  ++E ++   ++
Sbjct  21   LLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQQSEKGEKGLRLEDI  80

Query  81   QAQDISATQQKVLTYMALAGQLDSSDIHLTLSKNEKITVIEMRIHGELEIIDELTFDEGL  140
            + +++S+ Q  VL Y  +A ++++SDIH T      +T IEMR+HGELE + EL+ ++G 
Sbjct  81   K-KEVSSRQGDVLNYFMVAKDIGASDIHGT--TRPGLTRIEMRVHGELETVSELAEEDGK  137

Query  141  SLVSTIYRSMCDLQSTDFLEQIAQKGRVASNYARRAGLFGARYQHMPTPDGLYVVLRIIP  200
            +  +TI  SMCD+   +F     Q GRVA+++ R+ GLFGARY H PT+DGL  V+R+IP
Sbjct  138  AQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTPTADGLHFVMRVIP  197

Query  201  DDSHKVPTMAQLGFLPEQQALAEKILRIPEGMVTLTGPTGSGKSTTLRTFSRHWLDRTQG  260
            DD++ VPT+ +LGFLP Q  L  + LR+PEGM+ L+GPTG+GKSTTLR+ S   L RT+ 
Sbjct  198  DDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTLRACSDLYLKRTRY  257

Query  261  KKRLLTIEFPVEGRIAGAIQTSVTPKSSAREAVVEAWEDSNAAALRSDPDAIVIGEMQER  320
            KKRLLT+E P EGRI GAIQT++    +    V  AW+   ++ALR DPDAI+ GE+++ 
Sbjct  258  KKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRLDPDAILPGELRDL  317

Query  321  NSVMAAVHAVESGHIVLDTLHAPSAAGAIPRMASMGVNIQLIADPQIMIGLLSQRLVQTL  380
             S++A++ A ++GH+VL TLH+ SA +   RM +MG N  L+AD+Q+++GL+SQRLVQ L
Sbjct  318  ISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQLLVGLISQRLVQVL  377

Query  381  CPHCRIPWTQKASALPADVRSRLEKYCNVPGICAAEQLWFRHPQGCEHCQKKVELTGR--  438
            CP+CRIPW+ K   L ++ R  LEKYC+V G+C +E+L FR+ +GC  C+K V + G+  
Sbjct  378  CPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCPTCRKAVIIGGKQV  437

Query  439  -IVSRGVTGRTVLAEVIRPDARFMTLFLSQGAAVARQYWLQHLGGISRRTHLLRRLAEGT  497
              V++GV+GR+V+AEV+R D+ +  L+L QG   A+ YW++++GGI+RR HLL++L +G 
Sbjct  438  ATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGITRRIHLLHKLNDGL  497

Query  498  VDPLDGDLVCPLDEDELL  515
            VDPLD+DL+ PLDEDE++
Sbjct  498  VDPLDADLIIPLDEDEVM  515

26) pilQ in NC_017445


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  340 bits (1275),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 207/442 (47%), Positives = 303/442 (69%), Gaps = 22/442 (4%)

Query  59   NGVHSGGKTEANSEQQARVVGFFRSAKRRNASDIHLLIGMNNVCIVQIRIHGELHTIAQL  118
            +G++  +     S +Q+ V+ +F  AK   ASDIH       +  +++R+HGEL+T+++L
Sbjct  73   KGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHG-TTRPGLTRIEMRVHGELETVSEL  131

Query  119  EKDEGMQLASTIIMSMCDVTEKSFNPNRAQDGRIRKEFVQDLNLFGARYAHTPAEFGLYV  178
              ++G   A+TII+SMCDVTE  F + R QDGR+   F++ + LFGARY+HTP+  GL  
Sbjct  132  AEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTPTADGLHF  191

Query  179  VMRILPDEGGNPPSLQDLGFLPPQQQLIHRMLSRPEGILIIAGPTGSGKSTSLRSFSELY  238
            VMR++PD+G+  P+L+ LGFLP Q +LI R L  PEG++I++GPTG+GKST+LR+ S+LY
Sbjct  192  VMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTLRACSDLY  251

Query  239  LTRYGQHKRLLTLEDPPEGLISGAVQTPVIADKSDPLAVDFAWNRSISASLRLDPDAMII  298
            L R    KRLLT+EDPPEG I GA+QTP+I DK+D   V +AW+R ++++LRLDPDA++ 
Sbjct  252  LKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRLDPDAILP  311

Query  299  GEIRDTNSLKSALIAAKSGHLVQTTLHANDAPGILARLTDTLDVPVAHIADPQIMIGLIA  358
            GE+RD  S+ ++++AA++GHLV +TLH+N A +I  R+  T++   + +AD+Q+++GLI+
Sbjct  312  GELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMI-TMGANAGLVADAQLLVGLIS  370

Query  359  QRLVQVLCPHCKQHWQEVQSKLTAAQHQLLTRHCQV------EKLYFRHKEGCTYC----  408
            QRLVQVLCP+C+  W   +  LT+ +++ L + C V      E+L FR+ EGC  C    
Sbjct  371  QRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCPTCRKAV  430

Query  409  ----------TAGVTGRRVIAEVIGPDVGFMTKYRHEGKLAARHYWITELNGITRRQHLQ  458
                        GV+GR V+AEV+  D  +     ++GK AA+ YWI E+ GITRR HL 
Sbjct  431  IIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGITRRIHLL  490

Query  459  TYLNEGLVDPLDADVQCPLDED  480
              LN+GLVDPLDAD+  PLDED
Sbjct  491  HKLNDGLVDPLDADLIIPLDED  512

27) outE in NC_017390


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  340 bits (1276),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 206/442 (47%), Positives = 303/442 (69%), Gaps = 22/442 (4%)

Query  59   NGVHSGGKTEANSEQQARVVGFFRSAKRRNASDIHLLIGMNNVCIVQIRIHGELHTIAQL  118
            +G++  +     S +Q+ V+ +F  AK   ASDIH       +  +++R+HGEL+T+++L
Sbjct  73   KGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHG-TTRPGLTRIEMRVHGELETVSEL  131

Query  119  EKDEGMQLASTIIMSMCDVTEKSFNPNRAQDGRIRKEFVQDLNLFGARYAHTPAEFGLYV  178
              ++G   A+TII+SMCDVTE  F + R QDGR+   F++ + LFGARY+HTP+  GL  
Sbjct  132  AEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTPTADGLHF  191

Query  179  VMRILPDEGGNPPSLQDLGFLPPQQQLIHRMLSRPEGILIIAGPTGSGKSTSLRSFSELY  238
            VMR++PD+G+  P+L+ LGFLP Q +LI R L  PEG++I++GPTG+GKST+LR+ S+LY
Sbjct  192  VMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTLRACSDLY  251

Query  239  LTRYGQHKRLLTLEDPPEGLISGAVQTPVIADKSDPLAVDFAWNRSISASLRLDPDAMII  298
            L R    KRLLT+EDPPEG I GA+QTP+I DK+D   V +AW+R ++++LRLDPDA++ 
Sbjct  252  LKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRLDPDAILP  311

Query  299  GEIRDTNSLKSALIAAKSGHLVQTTLHANDAPGILARLTDTLDVPVAHIADPQIMIGLIA  358
            GE+RD  S+ ++++AA++GHLV +TLH+N A +I  R+  T++   + +AD+Q+++GLI+
Sbjct  312  GELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMI-TMGANAGLVADAQLLVGLIS  370

Query  359  QRLVQVLCPHCKQHWQEVQSKLTAAQHQLLTRHCQV------EKLYFRHKEGCTYC----  408
            QRLVQVLCP+C+  W   +  LT+ +++ L + C V      E+L FR+ EGC  C    
Sbjct  371  QRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCPTCRKAV  430

Query  409  ----------TAGVTGRRVIAEVIGPDVGFMTKYRHEGKLAARHYWVTELNGITRRQHLQ  458
                        GV+GR V+AEV+  D  +     ++GK AA+ YW+ E+ GITRR HL 
Sbjct  431  IIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGITRRIHLL  490

Query  459  TYLNEGLVDPLDADVQCPLDED  480
              LN+GLVDPLDAD+  PLDED
Sbjct  491  HKLNDGLVDPLDADLIIPLDED  512

28) pilQ in NC_012214


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  340 bits (1276),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 206/442 (47%), Positives = 303/442 (69%), Gaps = 22/442 (4%)

Query  59   NGVHSGGKTEANSEQQARVVGFFRSAKRRNASDIHLLIGMNNVCIVQIRIHGELHTIAQL  118
            +G++  +     S +Q+ V+ +F  AK   ASDIH       +  +++R+HGEL+T+++L
Sbjct  73   KGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIHG-TTRPGLTRIEMRVHGELETVSEL  131

Query  119  EKDEGMQLASTIIMSMCDVTEKSFNPNRAQDGRIRKEFVQDLNLFGARYAHTPAEFGLYV  178
              ++G   A+TII+SMCDVTE  F + R QDGR+   F++ + LFGARY+HTP+  GL  
Sbjct  132  AEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTPTADGLHF  191

Query  179  VMRILPDEGGNPPSLQDLGFLPPQQQLIHRMLSRPEGILIIAGPTGSGKSTSLRSFSELY  238
            VMR++PD+G+  P+L+ LGFLP Q +LI R L  PEG++I++GPTG+GKST+LR+ S+LY
Sbjct  192  VMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTLRACSDLY  251

Query  239  LTRYGQHKRLLTLEDPPEGLISGAVQTPVIADKSDPLAVDFAWNRSISASLRLDPDAMII  298
            L R    KRLLT+EDPPEG I GA+QTP+I DK+D   V +AW+R ++++LRLDPDA++ 
Sbjct  252  LKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRLDPDAILP  311

Query  299  GEIRDTNSLKSALIAAKSGHLVQTTLHANDAPGILARLTDTLDVPVAHIADPQIMIGLIA  358
            GE+RD  S+ ++++AA++GHLV +TLH+N A +I  R+  T++   + +AD+Q+++GLI+
Sbjct  312  GELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMI-TMGANAGLVADAQLLVGLIS  370

Query  359  QRLVQVLCPHCKQHWQEVQSKLTAAQHQLLTRHCQV------EKLYFRHKEGCTYC----  408
            QRLVQVLCP+C+  W   +  LT+ +++ L + C V      E+L FR+ EGC  C    
Sbjct  371  QRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCPTCRKAV  430

Query  409  ----------TAGVTGRRVIAEVIGPDVGFMTKYRHEGKLAARHYWVTELNGITRRQHLQ  458
                        GV+GR V+AEV+  D  +     ++GK AA+ YW+ E+ GITRR HL 
Sbjct  431  IIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGITRRIHLL  490

Query  459  TYLNEGLVDPLDADVQCPLDED  480
              LN+GLVDPLDAD+  PLDED
Sbjct  491  HKLNDGLVDPLDADLIIPLDED  512

29) pilQ_3 in NC_012751


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  333 bits (1251),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 224/509 (45%), Positives = 329/509 (65%), Gaps = 42/509 (8%)

Query  20   QAEDGMIDMVIADNYREDFKVQHFVSRVQKAFPGRTRWVSLSLD------------DIAH  67
            +++  ++++++  + R D  VQ+ V  +    PG T ++    +            + ++
Sbjct  13   NPDTTILELLVDSQRRTDVAVQQKVMSLMEENPGVTMRLVTRSELLRYSEMARQQSEKGE  72

Query  68   AALPPSGDAPAHSVNQQRVSGYFRKAIALSASDVHLTVGRDGGEFCYVEARVHGELHCLD  127
             +L   +     S  Q  V  YF  A  ++ASD+H   G     +  +E RVHGEL+ + 
Sbjct  73   KGLRLEDIKKEVSSRQGDVLNYFMVAKDIGASDIH---GTTRPGLTRIEMRVHGELETVS  129

Query  128  CIDKDEGMALASTIILSMCDVTEKQFYPHLHQDGRIAERFLKPLGIFGARYAHMPAVGGL  187
             +  ++G A A+TIILSMCDVTE QFY+   QDGR+A +FL+ +G+FGARY+H P+ +GL
Sbjct  130  ELAEEDGKAQAATIILSMCDVTEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTPTADGL  189

Query  188  YVVMRLIQEEGEAVPDFESLGFLPDQVRVLKRLLRRPEGMIILSGPTGSGKSTTLRTASA  247
              VMR+I ++G+ VP +E LGFLP Q+R++KR LR PEGMIILSGPTG+GKSTTLR+ S 
Sbjct  190  HFVMRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTLRACSD  249

Query  248  AWLALWGYINRLP-VRRLLTIEDSPEGRIDGAIQTPIIADKKNPEDIKRAWRLSMAYALR  306
                   Y++R    +RLLT+ED+PEGRI GAIQTPII DK +  +++ AW+  ++ ALR
Sbjct  250  L------YLKRTRYKKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALR  303

Query  307  CDPDAILNGEIRDLESALTALKAAMTGHLVMTTLHANDGLNILERLEIEGVSAGLLADPQ  366
             DPDAIL GE+RDL S L+++ AA TGHLV++TLH+N +++I ER+   G +AGL+AD+Q
Sbjct  304  LDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQ  363

Query  367  LLIGLISQRLVQRLCPHCKVPYQRVAGQLEADDRNLIEHH------CQPEKVFMRHVEGC  420
            LL+GLISQRLVQ LCP+C++P      +L +++R+ +E        CQPE++  R+ EGC
Sbjct  364  LLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGC  423

Query  421  EHCY--------------HGIVGRMVVAEVIAPDAPFFELYRTKSRAAAKTYWHRKLGGI  466
              C                G+ GR VVAEV+  D+ +F L   +++ AAK+YW R +GGI
Sbjct  424  PTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGI  483

Query  467  TRNQHVLNYIHAGEVDPLAAHCVCPIDED  495
            TR  H+L+ ++ G VDPL A+ + P+DED
Sbjct  484  TRRIHLLHKLNDGLVDPLDADLIIPLDED  512

30) epsE in NC_022371


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  306 bits (1146),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 196/449 (44%), Positives = 297/449 (67%), Gaps = 40/449 (8%)

Query  75   ISGVENGINPVQQKMLGYISHAATLSASDLHITPGRDSTDFTYLEARVHGELELLDIVRK  134
            + ++ + +++ Q  +L Y+  A  ++ASD+H   G    ++T +E RVHGELE +  +  
Sbjct  77   LEDIKKEVSSRQGDVLNYFMVAKDIGASDIH---GTTRPGLTRIEMRVHGELETVSELAE  133

Query  135  DEGLELLGATYSGMTDVIKGTQFDPGVPQDARLAERFLKLAGLFGARYSHYPCVGGLYAV  194
            ++G    ++   +M DV    QF +G  QD+R+A +FL+  GLFGARYSH P  +GL  V
Sbjct  134  EDGKAQAATIILSMCDV-TEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTPTADGLHFV  192

Query  195  LRLIKDDSQHIPTFSMLGYHPEQERAVRRMLQRPEGIVILSGPTGSGKSTTLRTASAAYL  254
            +R+I DD++ +PT+  LG+ P Q R ++R L+ PEG++ILSGPTG+GKSTTLR+ S  YL
Sbjct  193  MRVIPDDGDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTLRACSDLYL  252

Query  255  EQYGFNDTGGILLPRRRLFTIESPPEGRIPGAIQTAVM-------DTAQGWVDSVKSALR  307
             +  +         ++RL+T+E PPEGRI GAIQT+++       +   +W   + SALR
Sbjct  253  KRTRY---------KKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALR  303

Query  308  LDPDAILNGEIRDHASAITAIKAAMTGHLMLTTLHANDPINILERLEMEGVQARMIADPQ  367
            LDPDAIL GE+RD  S +++I AA TGHL+L+TLH+N +++I ER+   G +A ++AD+Q
Sbjct  304  LDPDAILPGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQ  363

Query  368  LFIGLLSQRLVQVICPHCRLPWHEVESSRTDEERRLVENF------CQPDAVYLRNHNGC  421
            L++GL+SQRLVQV+CP+CR+PW       T EER  +E++      CQP+ + +RN++GC
Sbjct  364  LLVGLISQRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGC  423

Query  422  PHCW--------------RGVNGRTVIAEVISPDAKFFQIYREKGRIEAKTYWHRELGGM  467
            P C+              +GV GR+V+AEV+  D+ +F++  ++G+  AK+YW RE+GG+
Sbjct  424  PTCRKAVIIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGI  483

Query  468  TRNQHLLGKINSGQVDPLAAHYISPVDED  496
            TR  HLL K+N G VDPL A+ I P+DED
Sbjct  484  TRRIHLLHKLNDGLVDPLDADLIIPLDED  512

31) pilQ in NC_011745


> AF000001|13|G10|7274590|AAF14817.2|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|+|12287..14002|pilQ|-|PilQ
Length=571

 Score =  295 bits (1104),  Expect = 4e-81, Method: Compositional matrix adjust.
 Identities = 196/442 (45%), Positives = 296/442 (67%), Gaps = 40/442 (9%)

Query  86   INTVQRKVLDYIRKAAQLDASDLHITPGRDNTDFTYVEARVHGELEVLDILRKEEGLELL  145
            +++ Q  VL+Y+  A +++ASD+H   G    ++T +E RVHGELE +  L  E+G    
Sbjct  84   VSSRQGDVLNYFMVAKDIGASDIH---GTTRPGLTRIEMRVHGELETVSELAEEDGKAQA  140

Query  146  GATYSGMTDVIKGTQFDPGVPQDARLSEQYLKLAGLFGARYSHYPCVGGLYAVLRLIKDD  205
            ++   +M DV    QF +G  QD+R++ ++L+  GLFGARYSH P  +GL  V+R+I DD
Sbjct  141  ATIILSMCDV-TEPQFYAGRKQDGRVAAKFLRKVGLFGARYSHTPTADGLHFVMRVIPDD  199

Query  206  SLQIPTFSMLGYHPDQELTLRRILQRPEGIITLSGPTGSGKSTTLRTASAAYLEQYGFNN  265
            +  +PT+  LG+ P Q   ++R L+ PEG+I LSGPTG+GKSTTLR+ S  YL +  +  
Sbjct  200  GDVVPTLEKLGFLPKQIRLIKRTLRLPEGMIILSGPTGAGKSTTLRACSDLYLKRTRY--  257

Query  266  TGGILLPRRRLFTIESPPEGRIPGAIQTAVM----DSAQ---GWVDSIKSALRLDPDGIL  318
                   ++RL+T+E PPEGRI GAIQT+++    D A+   +W   + SALRLDPD+IL
Sbjct  258  -------KKRLLTVEDPPEGRIVGAIQTPIICDKADEAEVRLAWQRVLTSALRLDPDAIL  310

Query  319  NGEIRDHDSAITAIKAAMTGHLMLTTIHANDPINILERLEMEGVQARMIADPQLFIGLLS  378
             GE+RD  S +++I AA TGHL+L+T+H+N +++I ER+   G +A ++AD+QL++GL+S
Sbjct  311  PGELRDLISILAGIFAAQTGHLVLSTLHSNSAFSIPERMITMGANAGLVADAQLLVGLIS  370

Query  379  QRLVQLICPHCRRPWHEVATDRTDDERR------LVESVCNPDQVYLRNHEGCPHCW---  429
            QRLVQ++CP+CR PW     + T +ER        VE+VC+P+++ +RN+EGCP C+   
Sbjct  371  QRLVQVLCPECRIPWSVKKEHLTTEEREYLEKYCSVEGVCQPENLHFRNEEGCPTCRKAV  430

Query  430  -----------RGVTGRTVIAEVISPDARFFQLYREKGRIEARTYWHRELGGMTRNQHLL  478
                       +GV+GR+V+AEV+  D+ +F+L  ++G+  A++YW RE+GG+TR  HLL
Sbjct  431  IIGGKQVATVGKGVAGRSVVAEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGITRRIHLL  490

Query  479  GKINSGQVDPLAAHYISPVDED  500
             K+N G VDPL A+ I P+DED
Sbjct  491  HKLNDGLVDPLDADLIIPLDED  512