Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of SERP1621 gene of NC_002976_P2

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SERP1621
( YP_189186.1 )

DNA-binding protein HU

NC_002976
(Staphylococcus epidermidis RP62A)

5e-44

100

2) SATW20_21510
( YP_005732123.1 )

phage DNA-binding protein

NC_017331
(Staphylococcus aureus TW20)

3e-42

• Sequence Alignments

1) SERP1621 in NC_002976


> NC_002976_P2|121|G121|57867550|YP_189186.1|Staphylococcus_epidermidis_RP62A|+|78653..78982|-|SERP1621|DNA-binding 
protein 
HU
Length=109

 Score =  170 bits (630),  Expect = 5e-44, Method: Compositional matrix adjust.
 Identities = 109/109 (100%), Positives = 109/109 (100%), Gaps = 0/109 (0%)

Query  1    MTKLAKKDLINELQESARVRGLEITKKDAATLFSAFEDTVIEAIHAADEVGYDSFSTNFG  60
            MTKLAKKDLINELQESARVRGLEITKKDAATLFSAFEDTVIEAIHAADEVGYDSFSTNFG
Sbjct  1    MTKLAKKDLINELQESARVRGLEITKKDAATLFSAFEDTVIEAIHAADEVGYDSFSTNFG  60

Query  61   TFKIVEVSEKSGVSRLGGEEKFWTSPAHKTVRFKLNKSVKDKLKAETSK  109
            TFKIVEVSEKSGVSRLGGEEKFWTSPAHKTVRFKLNKSVKDKLKAETSK
Sbjct  61   TFKIVEVSEKSGVSRLGGEEKFWTSPAHKTVRFKLNKSVKDKLKAETSK  109

2) SATW20_21510 in NC_017331


> NC_002976_P2|121|G121|57867550|YP_189186.1|Staphylococcus_epidermidis_RP62A|+|78653..78982|-|SERP1621|DNA-binding 
protein 
HU
Length=109

 Score =  164 bits (607),  Expect = 3e-42, Method: Compositional matrix adjust.
 Identities = 104/109 (96%), Positives = 107/109 (99%), Gaps = 0/109 (0%)

Query  1    MTKLAKKDLINELQEKSRVRGLEITKKDAATLFSAFEDTMIEAIHAADEVGYDSFSTNFG  60
            MTKLAKKDLINELQE +RVRGLEITKKDAATLFSAFEDT+IEAIHAADEVGYDSFSTNFG
Sbjct  1    MTKLAKKDLINELQESARVRGLEITKKDAATLFSAFEDTVIEAIHAADEVGYDSFSTNFG  60

Query  61   TFKIVEVPEKSGVSRLGGEEKSWTSPAHKTVRFKLNKSVKDKLKAETSK  109
            TFKIVEV+EKSGVSRLGGEEK WTSPAHKTVRFKLNKSVKDKLKAETSK
Sbjct  61   TFKIVEVSEKSGVSRLGGEEKFWTSPAHKTVRFKLNKSVKDKLKAETSK  109