Hit (GenBank Accn) |
Product |
Source Genome |
Eval. |
Ident.(%) |
|
type III secretion system protein |
NC_013971 (Erwinia amylovora ATCC 49946) |
0.0 |
69 |
|
type III secretion inner membrane protein HrcV |
NC_013961 (Erwinia amylovora CFBP1430) |
0.0 |
69 |
|
type III secretion protein, HrcV family |
NC_022268 (Serratia sp. ATCC 39006) |
0.0 |
70 |
|
type III secretion inner membrane protein HrcV |
NC_017390 (Erwinia pyrifoliae DSM 12163) |
0.0 |
69 |
|
hrp/hrc type III secretion system-Hrp/hrc secretion/translocation pathway-harpin secretion protein |
NC_012214 (Erwinia pyrifoliae Ep1/96) |
0.0 |
69 |
|
hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-harpin secretion protein |
NC_017445 (Erwinia sp. Ejp617) |
0.0 |
69 |
|
HrcV family type III secretion protein |
NC_012917 (Pectobacterium carotovorum PC1) |
0.0 |
69 |
|
Harpin secretion protein HrpI (hrp cluster) |
NC_010694 (Erwinia tasmaniensis Et1/99) |
0.0 |
68 |
|
protein HrcV |
NC_018525 (Pectobacterium carotovorum PCC21) |
0.0 |
69 |
|
type III secretion system protein |
NC_004547 (Pectobacterium atrosepticum SCRI1043) |
0.0 |
69 |
|
type III secretion protein, HrcV family |
NC_013592 (Dickeya dadantii Ech586) |
0.0 |
69 |
|
Type III secretion protein HrcV |
NC_007005 (Pseudomonas syringae B728a) |
0.0 |
65 |
|
type III secretion component protein HrcV |
NC_005773 (Pseudomonas syringae 1448A) |
0.0 |
66 |
|
type III secretion protein HrcV |
NC_004578 (Pseudomonas syringae DC3000) |
0.0 |
66 |
|
HrcV family type III secretion protein |
NC_012912 (Dickeya zeae Ech1591) |
0.0 |
69 |
|
type III secretion protein, HrcV family |
NC_020064 (Serratia marcescens FGI94) |
0.0 |
62 |
|
type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) |
NC_014500 (Dickeya dadantii 3937) |
0.0 |
69 |
|
protein HrcV |
NC_016830 (Pseudomonas fluorescens F113) |
0.0 |
67 |
|
HrcV family type III secretion protein |
NC_015276 (Marinomonas mediterranea MMB-1) |
0.0 |
64 |
|
type III secretion protein, membrane protein |
NC_015379 (Pseudomonas brassicacearum NFM421) |
0.0 |
67 |
|
type III secretion protein RscV |
NC_017911 (Pseudomonas fluorescens A506) |
0.0 |
64 |
|
HrcV family type III secretion protein |
NC_009439 (Pseudomonas mendocina ymp) |
0.0 |
65 |
|
type III secretion protein RscV |
NC_020209 (Pseudomonas poae RE*1-1-14) |
0.0 |
64 |
|
hypothetical protein |
NC_021500 (Enterobacter sp. R4-368) |
3e-163 |
57 |
|
type III secretion HrcV transmembrane protein |
NC_014323 (Herbaspirillum seropedicae SmR1) |
2e-108 |
45 |
|
type III secretory pathway subunit EscV |
NC_007645 (Hahella chejuensis KCTC 2396) |
2e-108 |
44 |
|
Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV |
NC_021285 (Achromobacter xylosoxidans NH44784-1996) |
2e-104 |
45 |
|
Low calcium response locus protein D (LcrD) |
NC_016642 (Pseudovibrio sp. FO-BEG1) |
1e-98 |
41 |
|
putative membrane-bound Yop protein YscV |
NC_005813 (Yersinia pestis 91001) |
2e-97 |
43 |
|
type III secretion protein LcrD |
NC_010157 (Yersinia pestis Angola) |
2e-97 |
43 |
|
membrane-bound Yop protein |
NC_008122 (Yersinia pestis Antiqua) |
2e-97 |
43 |
|
low calcium response protein D |
NC_003131 (Yersinia pestis CO92) |
2e-97 |
43 |
|
low calcium response protein D |
NC_017153 (Yersinia pestis D106004) |
2e-97 |
43 |
|
low calcium response protein D |
NC_017157 (Yersinia pestis D182038) |
2e-97 |
43 |
|
membrane-bound Yop protein |
NC_009377 (Yersinia pestis Pestoides F) |
2e-97 |
43 |
|
low calcium response protein D |
NC_014017 (Yersinia pestis Z176003) |
2e-97 |
43 |
|
lcrD, yscV; membrane-bound Yop protein |
NC_006153 (Yersinia pseudotuberculosis IP 32953) |
2e-97 |
43 |
|
HrcV family type III secretion protein |
NC_010635 (Yersinia pseudotuberculosis PB1/+) |
2e-97 |
43 |
|
Low calcium response locus protein D |
NC_015717 (Hyphomicrobium sp. MC1) |
2e-97 |
42 |
|
low calcium response locus membrane protein D,required for Yop secretion |
NC_015475 (Yersinia enterocolitica 105.5R(r)) |
3e-97 |
42 |
|
type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) |
NC_017565 (Yersinia enterocolitica Y11) |
3e-97 |
42 |
|
low calcium response locus membrane protein d |
NC_008791 (Yersinia enterocolitica 8081) |
5e-97 |
42 |
|
type III secretion pore protein |
NC_018829 (Bordetella bronchiseptica MO149) |
2e-96 |
46 |
|
putative type III secretion pore protein |
NC_017223 (Bordetella pertussis CS) |
6e-96 |
46 |
|
type III secretion pore protein |
NC_002929 (Bordetella pertussis Tohama I) |
6e-96 |
46 |
|
type III secretion pore protein |
NC_018518 (Bordetella pertussis 18323) |
8e-96 |
46 |
|
type III secretion pore protein |
NC_019382 (Bordetella bronchiseptica 253) |
3e-95 |
45 |
|
type III secretion pore protein |
NC_018828 (Bordetella parapertussis Bpp5) |
3e-95 |
45 |
|
type III secretion pore protein |
NC_002927 (Bordetella bronchiseptica RB50) |
4e-95 |
46 |
|
type III secretory pathway subunit EscV |
NC_007645 (Hahella chejuensis KCTC 2396) |
2e-93 |
41 |
|
type III secretion pore protein |
NC_002928 (Bordetella parapertussis 12822) |
5e-90 |
45 |
|
secretion system apparatus protein SsaV |
NC_017168 (Yersinia pestis A1122) |
2e-89 |
41 |
|
secretion system apparatus protein SsaV |
NC_008150 (Yersinia pestis Antiqua) |
2e-89 |
41 |
|
secretion system apparatus protein SsaV |
NC_003143 (Yersinia pestis CO92) |
2e-89 |
41 |
|
secretion system apparatus protein |
NC_017154 (Yersinia pestis D106004) |
2e-89 |
41 |
|
secretion system apparatus protein |
NC_017160 (Yersinia pestis D182038) |
2e-89 |
41 |
|
secretion system apparatus protein |
NC_017265 (Yersinia pestis Harbin 35) |
2e-89 |
41 |
|
secretion system apparatus protein SsaV |
NC_009381 (Yersinia pestis Pestoides F) |
2e-89 |
41 |
|
secretion system apparatus protein |
NC_014029 (Yersinia pestis Z176003) |
2e-89 |
41 |
|
secretion system apparatus protein SsaV |
NC_005810 (Yersinia pestis 91001) |
3e-89 |
41 |
|
secretion system apparatus protein SsaV |
NC_004088 (Yersinia pestis KIM) |
3e-89 |
41 |
|
secretion system apparatus protein SsaV |
NC_006155 (Yersinia pseudotuberculosis IP 32953) |
8e-87 |
41 |
|
secretion system apparatus protein SsaV |
NC_010634 (Yersinia pseudotuberculosis PB1/+) |
8e-87 |
41 |
|
secretion system apparatus protein SsaV |
NC_005085 (Chromobacterium violaceum ATCC 12472) |
3e-86 |
41 |
SELECT distinct ph.genome_accn, ph.id_genome_orf, ph.position_begin_pai, ph.position_end_pai, ph.position_begin_genome, ph.position_end_genome, ph.identity, ph.qcoverage, ph.tcoverage,
ph.evalue, ph.score, ph.multi_hsp, ph.multi_strand, ph.source_class, hsp, go.name, go.name_alt, go.pid
FROM pai_homolog as ph, genome_orf as go
WHERE ph.pai_accn='DQ168848' AND ph.id_pai_orf='12' AND match_level='P'
AND go.genome_accn=ph.genome_accn AND ph.id_genome_orf=go.id_genome_orf
ORDER BY ph.score desc, ph.evalue asc, ph.identity desc