Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of trwM gene of AJ496288

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) trwM
( YP_007463271.1 )

TrwM protein

NC_020301
(Bartonella vinsonii Winnie)

3e-39

2) trwM
( YP_032784.1 )

trwM protein

NC_005955
(Bartonella quintana Toulouse)

1e-38

3) trwM
( YP_034261.1 )

trwM protein

NC_005956
(Bartonella henselae Houston-1)

2e-38

4) trwM
( YP_001610475.1 )

TrwM protein

NC_010161
(Bartonella tribocorum CIP 105476)

1e-34

100

5) trwM
( YP_002972702.1 )

TrwM protein

NC_012846
(Bartonella grahamii as4aup)

2e-34

6) trwM
( YP_007461858.1 )

TrwM protein

NC_020300
(Bartonella australis Aust/NH1)

5e-30

7) A2cp1_1136
( YP_002491547.1 )

type IV secretory pathway VirB3 family protein

NC_011891
(Anaeromyxobacter dehalogenans 2CP-1)

1e-15

8) trwM
( YP_005994976.1 )

probable conjugal transfer protein

NC_017557
(Xanthomonas albilineans GPE PC73)

5e-14

9) traA
( YP_005994953.1 )

probable conjugal transfer protein

NC_017556
(Xanthomonas albilineans GPE PC73)

1e-06

• Sequence Alignments

1) trwM in NC_020301


> AJ496288|12|G12|32328581|CAD42843.1|Bartonella_tribocorum_IBS_506T|+|9168..9476|trwM|-|TrwM 
protein
Length=102

 Score =  154 bits (567),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 89/102 (88%), Positives = 96/102 (95%), Gaps = 0/102 (0%)

Query  1    MKSQKHEAFPLFKGATRVPTIWGVPMMPLIVMVVGVATIAMTVNIFLWVIAPPLWFIMVQ  60
            MKS+ +  FPLFKGATRVPTIWGVPMMPLIVMV+GVA +AM +NIFLW+IAPPLWFIMVQ
Sbjct  1    MKSKEQRDFPLFKGATRVPTIWGVPMMPLIVMVMGVAIVAMMINIFLWIIAPPLWFIMVQ  60

Query  61   ITKNDDKAFRIWWLWIDTKFRNRNKGFWGASSYSPSNYRKRR  102
            ITKNDDKAFRIWWLWIDTKFRNRNKGFWGASSYSPS+Y KRR
Sbjct  61   ITKNDDKAFRIWWLWIDTKFRNRNKGFWGASSYSPSDYSKRR  102

2) trwM in NC_005955


> AJ496288|12|G12|32328581|CAD42843.1|Bartonella_tribocorum_IBS_506T|+|9168..9476|trwM|-|TrwM 
protein
Length=102

 Score =  152 bits (560),  Expect = 1e-38, Method: Compositional matrix adjust.
 Identities = 86/102 (85%), Positives = 96/102 (95%), Gaps = 0/102 (0%)

Query  1    MKSQKHEAFPLFKGATRVPTIWGVPMMPLIVMVMGVAVMSMTINIFLWLIAPPLWFVMAQ  60
            MKS+ +  FPLFKGATRVPTIWGVPMMPLIVMVMGVA+++M INIFLW+IAPPLWF+M Q
Sbjct  1    MKSKEQRDFPLFKGATRVPTIWGVPMMPLIVMVMGVAIVAMMINIFLWIIAPPLWFIMVQ  60

Query  61   ITKNDDKAFHIWWLWIDTKFRNRNKSFWGASSYSPSNYQKRR  102
            ITKNDDKAF+IWWLWIDTKFRNRNK+FWGASSYSPS+Y KRR
Sbjct  61   ITKNDDKAFRIWWLWIDTKFRNRNKGFWGASSYSPSDYSKRR  102

3) trwM in NC_005956


> AJ496288|12|G12|32328581|CAD42843.1|Bartonella_tribocorum_IBS_506T|+|9168..9476|trwM|-|TrwM 
protein
Length=102

 Score =  151 bits (557),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 86/102 (85%), Positives = 95/102 (94%), Gaps = 0/102 (0%)

Query  1    MKPQKHEAFPLFKGATRVPTIWGVPMMPLIVMAMSVAVIAMTINIFLWLIAPPLWFIMAQ  60
            MK++ +  FPLFKGATRVPTIWGVPMMPLIVM M+VA++AM INIFLW+IAPPLWFIM Q
Sbjct  1    MKSKEQRDFPLFKGATRVPTIWGVPMMPLIVMVMGVAIVAMMINIFLWIIAPPLWFIMVQ  60

Query  61   ITKNDDKAFRIWWLWIDTKFRNRNKSFWGASSYSPSNYRKRR  102
            ITKNDDKAFRIWWLWIDTKFRNRNK+FWGASSYSPS+Y KRR
Sbjct  61   ITKNDDKAFRIWWLWIDTKFRNRNKGFWGASSYSPSDYSKRR  102

4) trwM in NC_010161


> AJ496288|12|G12|32328581|CAD42843.1|Bartonella_tribocorum_IBS_506T|+|9168..9476|trwM|-|TrwM 
protein
Length=102

 Score =  139 bits (510),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 102/102 (100%), Positives = 102/102 (100%), Gaps = 0/102 (0%)

Query  1    MKSKEQRDFPLFKGATRVPTIWGVPMMPLivmvmgvaivamminiFLWIIAPPLWFIMVQ  60
            MKSKEQRDFPLFKGATRVPTIWGVPMMPLIVMVMGVAIVAMMINIFLWIIAPPLWFIMVQ
Sbjct  1    MKSKEQRDFPLFKGATRVPTIWGVPMMPLIVMVMGVAIVAMMINIFLWIIAPPLWFIMVQ  60

Query  61   ITKNDDKAFRIWWLWIDTKFRNRNKGFWGASSYSPSDYSKRR  102
            ITKNDDKAFRIWWLWIDTKFRNRNKGFWGASSYSPSDYSKRR
Sbjct  61   ITKNDDKAFRIWWLWIDTKFRNRNKGFWGASSYSPSDYSKRR  102

5) trwM in NC_012846


> AJ496288|12|G12|32328581|CAD42843.1|Bartonella_tribocorum_IBS_506T|+|9168..9476|trwM|-|TrwM 
protein
Length=102

 Score =  138 bits (507),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 93/102 (92%), Positives = 101/102 (99%), Gaps = 0/102 (0%)

Query  1    MKSQEQKEFPLFKGATRVPTIWGVPMMPFivmvmgvaviamtvSIFLWIIAPPLWFIMVQ  60
            MKS+EQ++FPLFKGATRVPTIWGVPMMP+IVMVMGVA++AM ++IFLWIIAPPLWFIMVQ
Sbjct  1    MKSKEQRDFPLFKGATRVPTIWGVPMMPLIVMVMGVAIVAMMINIFLWIIAPPLWFIMVQ  60

Query  61   ITKNDDKAFRIWWLWIDTKFRNRNKGFWGASSYSPSDYSKRR  102
            ITKNDDKAFRIWWLWIDTKFRNRNKGFWGASSYSPSDYSKRR
Sbjct  61   ITKNDDKAFRIWWLWIDTKFRNRNKGFWGASSYSPSDYSKRR  102

6) trwM in NC_020300


> AJ496288|12|G12|32328581|CAD42843.1|Bartonella_tribocorum_IBS_506T|+|9168..9476|trwM|-|TrwM 
protein
Length=102

 Score =  123 bits (451),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 79/102 (78%), Positives = 93/102 (92%), Gaps = 0/102 (0%)

Query  1    MKQQKQKEFPLFKGATRVPTIWGVPMIPLmvmamgvavvamTISLLWWFVALPLWFIMAQ  60
            MK + Q++FPLFKGATRVPTIWGVPM+PL+VM MGVA+VAM I+++ W++A PLWFIM Q
Sbjct  1    MKSKEQRDFPLFKGATRVPTIWGVPMMPLIVMVMGVAIVAMMINIFLWIIAPPLWFIMVQ  60

Query  61   ITKSDDRAFRIWWLWIDTKFRNRNKNFWGASSYSPSNYRKRR  102
            ITK+DD+AFRIWWLWIDTKFRNRNK FWGASSYSPS+Y KRR
Sbjct  61   ITKNDDKAFRIWWLWIDTKFRNRNKGFWGASSYSPSDYSKRR  102

7) A2cp1_1136 in NC_011891


> AJ496288|12|G12|32328581|CAD42843.1|Bartonella_tribocorum_IBS_506T|+|9168..9476|trwM|-|TrwM 
protein
Length=102

 Score = 76.0 bits (269),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 47/98 (48%), Positives = 71/98 (73%), Gaps = 10/98 (10%)

Query  5    FPLFKGATRVPTVAGVPLIPAVVLVITVASATVLLG-FSWLALLAPGWLLMAQVTRTDDR  63
            FPLFKGATRVPT+ GVP++P +V+V+ VA  ++++  F W+ + +P W++M Q+T+ DD+
Sbjct  9    FPLFKGATRVPTIWGVPMMPLIVMVMGVAIVAMMINIFLWI-IAPPLWFIMVQITKNDDK  67

Query  64   AFRILWLWAQTKVANRLRLGARRGVHDLWGASAYATSD  101
            AFRI WLW +TK  NR +        ++WGAS+Y+ SD
Sbjct  68   AFRIWWLWIDTKFRNRNK--------GFWGASSYSPSD  97

8) trwM in NC_017557


> AJ496288|12|G12|32328581|CAD42843.1|Bartonella_tribocorum_IBS_506T|+|9168..9476|trwM|-|TrwM 
protein
Length=102

 Score = 70.5 bits (248),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 55/101 (55%), Positives = 71/101 (71%), Gaps = 0/101 (0%)

Query  1    MNKPQQNAFPLFKGATRTPLFMGvpllplifvvflvfipaalvSIWCWAALVPLYFTMRL  60
            M+  +Q  FPLFKGATR P + GVP++PLI +V  V I A +++I  W    PL F M  
Sbjct  1    MKSKEQRDFPLFKGATRVPTIWGVPMMPLIVMVMGVAIVAMMINIFLWIIAPPLWFIMVQ  60

Query  61   IVKHDDRAFSIWGLWLDTSLRNRNKGFWKASSYAPATYHKK  101
            I K+DD+AF IW LW+DT +RNRNKGFW ASSY+P+ Y K+
Sbjct  61   ITKNDDKAFRIWWLWIDTKFRNRNKGFWGASSYSPSDYSKR  101

9) traA in NC_017556


> AJ496288|12|G12|32328581|CAD42843.1|Bartonella_tribocorum_IBS_506T|+|9168..9476|trwM|-|TrwM 
protein
Length=102

 Score = 45.8 bits (154),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 39/94 (42%), Positives = 59/94 (63%), Gaps = 4/94 (4%)

Query  9    FPLFRGATRLPTFAGVPRTAFLATFVTCATLFLTIHlwalalfalawfIEFCIAKHDDRI  68
            FPLF+GATR+PT+ GVP  +++   +  A + + I++    + +  WFI   I+K+DD+ 
Sbjct  9    FPLFKGATRVPTIWGVPMMPLIVMVMGVAIVAMMINIFLWIIAPPLWFIMVQITKNDDKA  68

Query  69   FRIIALAVRTKGLNSINSPFTKKWGGSSYSPVDY  102
            FRI  L + TK + + N  F   WG+SSYSP DY
Sbjct  69   FRIWWLWIDTK-FRNRNKGF---WGASSYSPSDY  98