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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrpQ gene of AF232004

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpQ
( NP_791228.1 )

type III secretion protein HrpQ

NC_004578
(Pseudomonas syringae DC3000)

2e-147

100

2) Psyr_1214
( YP_234306.1 )

type III secretion protein HrpQ

NC_007005
(Pseudomonas syringae B728a)

1e-123

3) hrpQ
( YP_273550.1 )

type III secretion component protein HrpQ

NC_005773
(Pseudomonas syringae 1448A)

8e-121

4) Pmen_0040
( YP_001185546.1 )

YscD/HrpQ family type III secretion apparatus protein

NC_009439
(Pseudomonas mendocina ymp)

5e-70

• Sequence Alignments

1) hrpQ in NC_004578


> AF232004|12|G11|11276510|AAG33878.1|Pseudomonas_syringae_pv._tomato_DC3000|+|14588..15580|hrpQ|-|HrpQ
Length=330

 Score =  515 bits (1941),  Expect = 2e-147, Method: Compositional matrix adjust.
 Identities = 330/330 (100%), Positives = 330/330 (100%), Gaps = 0/330 (0%)

Query  1    MFELRVLNGQHQGAALPLIGEQWSIGSAQQQDLALDDSGVESLHCRLQRLDDSWTLNAEE  60
            MFELRVLNGQHQGAALPLIGEQWSIGSAQQQDLALDDSGVESLHCRLQRLDDSWTLNAEE
Sbjct  1    MFELRVLNGQHQGAALPLIGEQWSIGSAQQQDLALDDSGVESLHCRLQRLDDSWTLNAEE  60

Query  61   GAVCDEEGHSQASVDLTLNTAFMLGSVWLCVSPAGDEWPSVPAVIPKQPQAEAEPARHEA  120
            GAVCDEEGHSQASVDLTLNTAFMLGSVWLCVSPAGDEWPSVPAVIPKQPQAEAEPARHEA
Sbjct  61   GAVCDEEGHSQASVDLTLNTAFMLGSVWLCVSPAGDEWPSVPAVIPKQPQAEAEPARHEA  120

Query  121  PLEKVKSRSQFLNRTTgiiagllvgvigSAWSLTRPAAIVLDQGPAHIASAMTTAPGMPN  180
            PLEKVKSRSQFLNRTTGIIAGLLVGVIGSAWSLTRPAAIVLDQGPAHIASAMTTAPGMPN
Sbjct  121  PLEKVKSRSQFLNRTTGIIAGLLVGVIGSAWSLTRPAAIVLDQGPAHIASAMTTAPGMPN  180

Query  181  AAPKTSQPAAKPAGPATDKRVRLASMEAVRHQLTTMLSDRMLTDVSVAETPEGLMLNGHL  240
            AAPKTSQPAAKPAGPATDKRVRLASMEAVRHQLTTMLSDRMLTDVSVAETPEGLMLNGHL
Sbjct  181  AAPKTSQPAAKPAGPATDKRVRLASMEAVRHQLTTMLSDRMLTDVSVAETPEGLMLNGHL  240

Query  241  KEESLVVYQRMLQRFKDRYDSPVTVLDNVASARNTLPFVVVQIMTGPHAHLVTADGRRMY  300
            KEESLVVYQRMLQRFKDRYDSPVTVLDNVASARNTLPFVVVQIMTGPHAHLVTADGRRMY
Sbjct  241  KEESLVVYQRMLQRFKDRYDSPVTVLDNVASARNTLPFVVVQIMTGPHAHLVTADGRRMY  300

Query  301  VGDEKDGLRLTKIDDQRLQFDGDRHIEVTW  330
            VGDEKDGLRLTKIDDQRLQFDGDRHIEVTW
Sbjct  301  VGDEKDGLRLTKIDDQRLQFDGDRHIEVTW  330

2) Psyr_1214 in NC_007005


> AF232004|12|G11|11276510|AAG33878.1|Pseudomonas_syringae_pv._tomato_DC3000|+|14588..15580|hrpQ|-|HrpQ
Length=330

 Score =  435 bits (1639),  Expect = 1e-123, Method: Compositional matrix adjust.
 Identities = 264/330 (80%), Positives = 307/330 (94%), Gaps = 6/330 (1%)

Query  1    MFELRVLNGQHQGAALPLIGEQWSIGSAGQHDLALDDAGVESLHCRLQRVDDNWTLNAEQ  60
            MFELRVLNGQHQGAALPLIGEQWSIGSA Q+DLALDD+GVESLHCRLQR+DD+WTLNAE+
Sbjct  1    MFELRVLNGQHQGAALPLIGEQWSIGSAQQQDLALDDSGVESLHCRLQRLDDSWTLNAEE  60

Query  61   GAVCDEQGNARPSIDLTLNNAFMLGSVWLCVSPAGDEWPSVPAVIPKQPEAESGQARNDV  120
            GAVCDE+G++++S+DLTLN AFMLGSVWLCVSPAGDEWPSVPAVIPKQP+AE+  AR++ 
Sbjct  61   GAVCDEEGHSQASVDLTLNTAFMLGSVWLCVSPAGDEWPSVPAVIPKQPQAEAEPARHEA  120

Query  121  PLEKVKSRSQFLNRTTgiiagllvgvigSAWSLTRPPAIAMDQSPAHLAAATT------E  174
            PLEKVKSRSQFLNRTTGIIAGLLVGVIGSAWSLTRP+AI +DQ+PAH+A+A T      +
Sbjct  121  PLEKVKSRSQFLNRTTGIIAGLLVGVIGSAWSLTRPAAIVLDQGPAHIASAMTTAPGMPN  180

Query  175  ASPDTPKAPARAANPVTDNRIRLSSADAVRHQLSTMLSDRLLTDVSVEETPDGLILNGDL  234
            A+P T++++A++A P TD+R+RL+S +AVRHQL+TMLSDR+LTDVSV ETP+GL+LNG+L
Sbjct  181  AAPKTSQPAAKPAGPATDKRVRLASMEAVRHQLTTMLSDRMLTDVSVAETPEGLMLNGHL  240

Query  235  KEESLLVYQRMLQRFKALYDSPVTVLDNVGSNRNTLPFVVVQIMTGPHAHLVTADGRRVY  294
            KEESL+VYQRMLQRFK  YDSPVTVLDNV+S RNTLPFVVVQIMTGPHAHLVTADGRR+Y
Sbjct  241  KEESLVVYQRMLQRFKDRYDSPVTVLDNVASARNTLPFVVVQIMTGPHAHLVTADGRRMY  300

Query  295  VGDEVDGLRLTRIDNQRLQFDGNRHIEVNW  324
            VGDE DGLRLT+ID+QRLQFDG+RHIEV W
Sbjct  301  VGDEKDGLRLTKIDDQRLQFDGDRHIEVTW  330

3) hrpQ in NC_005773


> AF232004|12|G11|11276510|AAG33878.1|Pseudomonas_syringae_pv._tomato_DC3000|+|14588..15580|hrpQ|-|HrpQ
Length=330

 Score =  426 bits (1603),  Expect = 8e-121, Method: Compositional matrix adjust.
 Identities = 260/330 (79%), Positives = 302/330 (92%), Gaps = 6/330 (1%)

Query  1    MFELRVLNGQHQGAALPLVGEQWSIGSAAQHDLALDDAGVESLHCRLQRLDDSWTLNAEE  60
            MFELRVLNGQHQGAALPL+GEQWSIGSA Q+DLALDD+GVESLHCRLQRLDDSWTLNAEE
Sbjct  1    MFELRVLNGQHQGAALPLIGEQWSIGSAQQQDLALDDSGVESLHCRLQRLDDSWTLNAEE  60

Query  61   GAVCDEEGNARPGIDLTLNTAFLLGSVWLCVSPAGDEWPSVPAVIPKQPQADPEPVRNDV  120
            GAVCDEEG++++++DLTLNTAF+LGSVWLCVSPAGDEWPSVPAVIPKQPQA++EP R++ 
Sbjct  61   GAVCDEEGHSQASVDLTLNTAFMLGSVWLCVSPAGDEWPSVPAVIPKQPQAEAEPARHEA  120

Query  121  PLKKVKSRSQLLIRTTgiiagllvgvigSAWSLTRPPAIAMYQSPGHMASVTAEAPVETS  180
            PL KVKSRSQ+L RTTGIIAGLLVGVIGSAWSLTRP+AI + Q+P+H+AS  + AP   +
Sbjct  121  PLEKVKSRSQFLNRTTGIIAGLLVGVIGSAWSLTRPAAIVLDQGPAHIASAMTTAPGMPN  180

Query  181  PTP------AKIIKPVADKRIRLTSADAVRHQLGTMLSDRLLTDVSVEETAEGLVLNGDL  234
            ++P      AK   P +DKR+RL+S +AVRHQL TMLSDR+LTDVSV ET+EGL+LNG+L
Sbjct  181  AAPKTSQPAAKPAGPATDKRVRLASMEAVRHQLTTMLSDRMLTDVSVAETPEGLMLNGHL  240

Query  235  KEESLLVYQRMLQRFKDRYESPVTVFDNVASTRSALPFVVVQIMTGPHAHLVTADGRRIY  294
            KEESL+VYQRMLQRFKDRY+SPVTV+DNVAS+R++LPFVVVQIMTGPHAHLVTADGRR+Y
Sbjct  241  KEESLVVYQRMLQRFKDRYDSPVTVLDNVASARNTLPFVVVQIMTGPHAHLVTADGRRMY  300

Query  295  VGDEVDGLRLTRIDNQRLQFDGNRHIEVNW  324
            VGDE DGLRLT+ID+QRLQFDG+RHIEV W
Sbjct  301  VGDEKDGLRLTKIDDQRLQFDGDRHIEVTW  330

4) Pmen_0040 in NC_009439


> AF232004|12|G11|11276510|AAG33878.1|Pseudomonas_syringae_pv._tomato_DC3000|+|14588..15580|hrpQ|-|HrpQ
Length=330

 Score =  257 bits (959),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 154/330 (47%), Positives = 227/330 (69%), Gaps = 26/330 (7%)

Query  1    MYELRVLTGLHKGAALPLIGEQWLIGAEEGRDLALHDPGVETLHCRLQRAGDSWQLLAEE  60
            M+ELRVL G H+GAALPLIGEQW IG+ + +DLAL+D+GVE+LHCRLQR +DSW L AEE
Sbjct  1    MFELRVLNGQHQGAALPLIGEQWSIGSAQQQDLALDDSGVESLHCRLQRLDDSWTLNAEE  60

Query  61   GAVLDGEGHSHASMEVLLDCPLVLGSVWVYLAAAESPWPTLPALVGHPGEDGDSKASAEV  120
            GAV D EGHS+AS+++ L+ +++LGSVW+ +++A   WP++PA++    +     A  E 
Sbjct  61   GAVCDEEGHSQASVDLTLNTAFMLGSVWLCVSPAGDEWPSVPAVIPKQPQAEAEPARHEA  120

Query  121  G---ERGRVRLLNRGTGIALGVLLGVMGSAWSLSWPVG------------SASGPAAVPT  165
                 ++R ++LNR TGI  G+L+GV+GSAWSL++P +            + + ++++P 
Sbjct  121  PLEKVKSRSQFLNRTTGIIAGLLVGVIGSAWSLTRPAAIVLDQGPAHIASAMTTAPGMPN  180

Query  166  SEP----------AAVSDGRTLLQKDEAVR-VLKQMLSERLLTAVSVEPNEQGVALMGSL  214
            + P          ++ +D R  L   EAVR  L  MLS+R+LT VSV    +G+ L G L
Sbjct  181  AAPKTSQPAAKPAGPATDKRVRLASMEAVRHQLTTMLSDRMLTDVSVAETPEGLMLNGHL  240

Query  215  QGEGMLVYERMLQRFEKDYETDFVLQDQVSSGAAGLPFVIVQIIAGPRGHLVMEDGRRLH  274
            + E+++VY+RMLQRF   Y++   + D+V+S+   LPFV+VQI++GP++HLV  DGRR+ 
Sbjct  241  KEESLVVYQRMLQRFKDRYDSPVTVLDNVASARNTLPFVVVQIMTGPHAHLVTADGRRMY  300

Query  275  VGDKLDGLRLVRIDNERILFDGVRRYEVAW  304
            VGD  DGLRL +ID++R+ FDG R+ EV+W
Sbjct  301  VGDEKDGLRLTKIDDQRLQFDGDRHIEVTW  330