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Homologs of STY4635 gene of NC_003198_P9

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) STY4635
( NP_458715.1 )

conserved hypothetical protein

NC_003198
(Salmonella enterica CT18)

0.0

100

2) t4328
( NP_807922.1 )

hypothetical protein

NC_004631
(Salmonella enterica Ty2)

0.0

3) TY21A_22045
( YP_007928569.1 )

hypothetical protein

NC_021176
(Salmonella enterica Ty21a)

0.0

4) SSPA2413
( YP_002143258.1 )

hypothetical protein

NC_011147
(Salmonella enterica AKU12601)

0.0

5) SPA2590
( YP_151769.1 )

hypothetical protein

NC_006511
(Salmonella enterica ATCC 9150)

0.0

6) CSSP291_01645
( YP_007439216.1 )

bacteriophage replication protein A

NC_020260
(Cronobacter sakazakii Sp291)

0.0

7) ECL_04434
( YP_003614912.1 )

bacteriophage replication protein A

NC_014121
(Enterobacter cloacae ATCC 13047)

0.0

8) CFSAN001992_19795
( YP_007473671.1 )

bacteriophage replication protein A

NC_020307
(Salmonella enterica CFSAN001992)

0.0

9) STM2729
( NP_461656.1 )

hypothetical protein

NC_003197
(Salmonella enterica LT2)

0.0

10) STMDT12_C27800
( YP_005248476.1 )

hypothetical protein

NC_016860
(Salmonella enterica T000240)

0.0

11) STU288_13805
( YP_007903852.1 )

hypothetical protein

NC_021151
(Salmonella enterica U288)

0.0

12) SeD_A3057
( YP_002216733.1 )

bacteriophage replication gene A

NC_011205
(Salmonella enterica CT_02021853)

0.0

13) SL1344_2701
( YP_005182597.1 )

bacteriophage protein

NC_016810
(Salmonella enterica SL1344)

0.0

14) endph
( YP_005243702.1 )

putative replication endonuclease from prophage-like region

NC_016857
(Salmonella enterica ST4/74)

0.0

15) UMN798_2950
( YP_005398098.1 )

bacteriophage protein

NC_017046
(Salmonella enterica 798)

0.0

16) STY3668
( NP_457859.1 )

possible endonuclease

NC_003198
(Salmonella enterica CT18)

0.0

17) STBHUCCB_35930
( YP_005219066.1 )

replication endonuclease from prophage-like region

NC_016832
(Salmonella enterica P-stx-12)

0.0

18) t3410
( NP_807073.1 )

endonuclease

NC_004631
(Salmonella enterica Ty2)

0.0

19) TY21A_17255
( YP_007927663.1 )

endonuclease

NC_021176
(Salmonella enterica Ty21a)

0.0

20) ECB_00825
( YP_003044043.1 )

putative replication protein for prophage

NC_012967
(Escherichia coli REL606)

0.0

21) c0942
( NP_752872.1 )

replication protein for prophage

NC_004431
(Escherichia coli CFT073)

0.0

22) LF82_407
( YP_002557482.1 )

replication protein for prophage

NC_011993
(Escherichia coli LF82)

0.0

23) N559_1281
( YP_008424325.1 )

bacteriophage replication protein A

NC_022082
(Klebsiella pneumoniae JM45)

0.0

24) EcHS_A0918
( YP_001457655.1 )

replication gene A protein

NC_009800
(Escherichia coli HS)

0.0

25) APECO78_07960
( YP_007380767.1 )

replication protein A

NC_020163
(Escherichia coli APEC O78)

0.0

26) SBO_0752
( YP_407253.1 )

endonuclease

NC_007613
(Shigella boydii Sb227)

0.0

27) EKO11_3027
( YP_005278678.1 )

replication protein A

NC_016902
(Escherichia coli KO11FL)

0.0

28) KO11_19480
( YP_006166214.1 )

putative replication protein for prophage

NC_017660
(Escherichia coli KO11FL)

0.0

29) ECW_m0916
( YP_006123665.1 )

replication gene A

NC_017635
(Escherichia coli W)

0.0

30) WFL_04460
( YP_006172342.1 )

putative replication protein for prophage

NC_017664
(Escherichia coli W)

0.0

31) E2348C_0809
( YP_002328375.1 )

replication protein

NC_011601
(Escherichia coli E2348/69)

0.0

32) P12B_c2745
( YP_006169756.1 )

Replication gene A

NC_017663
(Escherichia coli P12b)

0.0

33) UMNK88_898
( YP_006132687.1 )

hypothetical protein

NC_017641
(Escherichia coli UMNK88)

0.0

34) EcolC_2784
( YP_001725739.1 )

replication gene A

NC_010468
(Escherichia coli ATCC 8739)

0.0

35) ETA_05620
( YP_001906507.1 )

replication protein for prophage

NC_010694
(Erwinia tasmaniensis Et1/99)

0.0

36) Ent638_1350
( YP_001176082.1 )

bacteriophage replication gene A

NC_009436
(Enterobacter sp. 638)

0.0

37) KPN2242_07290
( YP_005953941.1 )

bacteriophage replication protein A

NC_017540
(Klebsiella pneumoniae KCTC 2242)

0.0

38) ECED1_3097
( YP_002398984.1 )

putative bacteriophage replication gene A protein

NC_011745
(Escherichia coli ED1a)

0.0

39) I137_13100
( YP_008382031.1 )

hypothetical protein

NC_021984
(Salmonella enterica S06004)

0.0

40) ECS88_2841
( YP_002392486.1 )

bacteriophage replication gene A protein (endonuclease)

NC_011742
(Escherichia coli S88)

0.0

41) Kvar_3185
( YP_003440102.1 )

replication protein A

NC_013850
(Klebsiella variicola At-22)

0.0

42) gpA
( YP_001005201.1 )

phage replication protein (endonuclease)

NC_008800
(Yersinia enterocolitica 8081)

6e-145

43) YPTB3137
( YP_071639.1 )

phage protein

NC_006155
(Yersinia pseudotuberculosis IP 32953)

4e-139

44) YPTS_3266
( YP_001873678.1 )

replication gene A

NC_010634
(Yersinia pseudotuberculosis PB1/+)

6e-139

45) UTI89_C0949
( YP_539965.1 )

prophage CP-933T replication protein

NC_007946
(Escherichia coli UTI89)

2e-137

46) ECH74115_2663
( YP_002271008.1 )

bacteriophage replication gene A protein

NC_011353
(Escherichia coli EC4115)

4e-137

47) ECSP_2494
( YP_003078381.1 )

replication protein for prophage CP-933T

NC_013008
(Escherichia coli TW14359)

4e-137

48) A
( YP_003367125.1 )

phage DNA replication protein

NC_013716
(Citrobacter rodentium ICC168)

5e-137

49) Z2978
( NP_288356.1 )

replication protein for prophage CP-933T

NC_002655
(Escherichia coli EDL933)

2e-136

50) A
( YP_003365547.1 )

phage DNA replication protein

NC_013716
(Citrobacter rodentium ICC168)

4e-136

51) ECNA114_0914
( YP_006138011.1 )

Putative Phage replication protein

NC_017644
(Escherichia coli NA114)

6e-136

52) SSON53_08320
( YP_005456214.1 )

replication protein for prophage CP-933T

NC_016822
(Shigella sonnei 53G)

6e-136

53) ECSE_1846
( YP_002293121.1 )

putative phage replication protein

NC_011415
(Escherichia coli SE11)

2e-135

54) E2348C_1806
( YP_002329327.1 )

replication protein

NC_011601
(Escherichia coli E2348/69)

8e-135

55) ECs2633
( NP_310660.1 )

phage replication protein

NC_002695
(Escherichia coli Sakai)

1e-134

56) O3M_11565
( YP_006769958.1 )

phage replication protein

NC_018650
(Escherichia coli 2009EL-2050)

2e-134

57) O3O_14035
( YP_006784082.1 )

phage replication protein

NC_018661
(Escherichia coli 2009EL-2071)

2e-134

58) O3K_11600
( YP_006779011.1 )

phage replication protein

NC_018658
(Escherichia coli 2011C-3493)

2e-134

59) UMNK88_1031
( YP_006132819.1 )

phage replication protein

NC_017641
(Escherichia coli UMNK88)

3e-134

60) ECOK1_2568
( YP_006101717.1 )

putative replication gene A protein

NC_017628
(Escherichia coli IHE3034)

4e-134

61) ECO103_1870
( YP_003221809.1 )

replication protein

NC_013353
(Escherichia coli 12009)

8e-134

62) G2583_2122
( YP_003499673.1 )

phage replication protein

NC_013941
(Escherichia coli CB9615)

1e-133

63) ECO26_2450
( YP_003229435.1 )

replication protein

NC_013361
(Escherichia coli 11368)

3e-133

64) EC55989_2098
( YP_002403152.1 )

phage replication protein

NC_011748
(Escherichia coli 55989)

5e-133

65) ETEC_1982
( YP_006115550.1 )

putative bacteriophage replication gene A

NC_017633
(Escherichia coli ETEC H10407)

5e-133

66) ECO26_2771
( YP_003229750.1 )

replication protein

NC_013361
(Escherichia coli 11368)

6e-133

67) A464_1368
( YP_008321964.1 )

Phage replication protein

NC_021870
(Salmonella bongori N268-08)

3e-129

68) ECA2627
( YP_050719.1 )

phage replication protein A

NC_004547
(Pectobacterium atrosepticum SCRI1043)

2e-99

69) PC1_2638
( YP_003018204.1 )

replication protein A

NC_012917
(Pectobacterium carotovorum PC1)

1e-98

• Sequence Alignments

1) STY4635 in NC_003198


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1296 bits (4918),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 804/804 (100%), Positives = 804/804 (100%), Gaps = 0/804 (0%)

Query  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60
            MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE
Sbjct  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60

Query  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA  120
            QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA
Sbjct  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA  120

Query  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180
            QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG
Sbjct  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180

Query  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240
            LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM
Sbjct  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240

Query  241  RLEVIPPAFEQLrrkkrrrkPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300
            RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC
Sbjct  241  RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300

Query  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360
            LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN
Sbjct  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360

Query  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420
            EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF
Sbjct  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420

Query  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480
            AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL
Sbjct  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480

Query  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540
            GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA
Sbjct  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540

Query  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600
            SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF
Sbjct  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600

Query  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660
            ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK
Sbjct  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660

Query  661  VRKAVDVQEAAADQGACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN  720
            VRKAVDVQEAAADQGACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN
Sbjct  661  VRKAVDVQEAAADQGACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN  720

Query  721  MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS  780
            MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS
Sbjct  721  MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS  780

Query  781  IPSGAGLRIFYRNHRLQEDDKWRQ  804
            IPSGAGLRIFYRNHRLQEDDKWRQ
Sbjct  781  IPSGAGLRIFYRNHRLQEDDKWRQ  804

2) TY21A_22045 in NC_021176


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1272 bits (4827),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 802/804 (99%), Positives = 802/804 (99%), Gaps = 2/804 (0%)

Query  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60
            MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE
Sbjct  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60

Query  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA  120
            QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA
Sbjct  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA  120

Query  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180
            QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG
Sbjct  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180

Query  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240
            LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM
Sbjct  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240

Query  241  RLEVIPPAFEQLrrkkrrrkPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300
            RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC
Sbjct  241  RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300

Query  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360
            LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN
Sbjct  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360

Query  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420
            EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF
Sbjct  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420

Query  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480
            AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL
Sbjct  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480

Query  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540
            GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA
Sbjct  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540

Query  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600
            SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF
Sbjct  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600

Query  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660
            ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK
Sbjct  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660

Query  661  VRKAVDVQEAAADQGACAPW--TRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN  718
            VRKAVDVQEAAADQGACAPW  TRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN
Sbjct  661  VRKAVDVQEAAADQGACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN  720

Query  719  MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS  778
            MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS
Sbjct  721  MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS  780

Query  779  IPSGAGLRIFYRNHRLQEDDKWRQ  802
            IPSGAGLRIFYRNHRLQEDDKWRQ
Sbjct  781  IPSGAGLRIFYRNHRLQEDDKWRQ  804

3) t4328 in NC_004631


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1272 bits (4827),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 802/804 (99%), Positives = 802/804 (99%), Gaps = 2/804 (0%)

Query  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60
            MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE
Sbjct  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60

Query  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA  120
            QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA
Sbjct  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA  120

Query  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180
            QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG
Sbjct  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180

Query  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240
            LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM
Sbjct  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240

Query  241  RLEVIPPAFEQLrrkkrrrkPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300
            RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC
Sbjct  241  RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300

Query  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360
            LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN
Sbjct  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360

Query  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420
            EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF
Sbjct  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420

Query  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480
            AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL
Sbjct  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480

Query  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540
            GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA
Sbjct  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540

Query  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600
            SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF
Sbjct  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600

Query  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660
            ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK
Sbjct  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660

Query  661  VRKAVDVQEAAADQGACAPW--TRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN  718
            VRKAVDVQEAAADQGACAPW  TRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN
Sbjct  661  VRKAVDVQEAAADQGACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN  720

Query  719  MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS  778
            MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS
Sbjct  721  MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS  780

Query  779  IPSGAGLRIFYRNHRLQEDDKWRQ  802
            IPSGAGLRIFYRNHRLQEDDKWRQ
Sbjct  781  IPSGAGLRIFYRNHRLQEDDKWRQ  804

4) SSPA2413 in NC_011147


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1267 bits (4806),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 799/804 (99%), Positives = 800/804 (99%), Gaps = 4/804 (0%)

Query  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60
            MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE
Sbjct  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60

Query  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLISHAKTAREQQRFNPDLVIIANVGA  120
            QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLI+HAKTAREQQRFNPDLVIIANVGA
Sbjct  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA  120

Query  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180
            QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG
Sbjct  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180

Query  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240
            LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM
Sbjct  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240

Query  241  RLEVIPPAFEQLrrkkrrrkPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300
            RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC
Sbjct  241  RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300

Query  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360
            LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN
Sbjct  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360

Query  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420
            EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF
Sbjct  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420

Query  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480
            AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL
Sbjct  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480

Query  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540
            GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA
Sbjct  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540

Query  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600
            SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF
Sbjct  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600

Query  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660
            ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK
Sbjct  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660

Query  661  VRKAVDVQEAAADQGACAPW----TRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN  716
            VRKAVDVQEAAADQGACAPW    TRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN
Sbjct  661  VRKAVDVQEAAADQGACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN  720

Query  717  MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS  776
            MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS
Sbjct  721  MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS  780

Query  777  IPSGAGLRIFYRNHRLQEDDKWRQ  800
            IPSGAGLRIFYRNHRLQEDDKWRQ
Sbjct  781  IPSGAGLRIFYRNHRLQEDDKWRQ  804

5) SPA2590 in NC_006511


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1267 bits (4806),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 799/804 (99%), Positives = 800/804 (99%), Gaps = 4/804 (0%)

Query  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60
            MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE
Sbjct  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60

Query  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLISHAKTAREQQRFNPDLVIIANVGA  120
            QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLI+HAKTAREQQRFNPDLVIIANVGA
Sbjct  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA  120

Query  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180
            QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG
Sbjct  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180

Query  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240
            LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM
Sbjct  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240

Query  241  RLEVIPPAFEQLrrkkrrrkPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300
            RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC
Sbjct  241  RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300

Query  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360
            LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN
Sbjct  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360

Query  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420
            EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF
Sbjct  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420

Query  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480
            AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL
Sbjct  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480

Query  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540
            GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA
Sbjct  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540

Query  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600
            SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF
Sbjct  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600

Query  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660
            ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK
Sbjct  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660

Query  661  VRKAVDVQEAAADQGACAPW----TRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN  716
            VRKAVDVQEAAADQGACAPW    TRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN
Sbjct  661  VRKAVDVQEAAADQGACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN  720

Query  717  MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS  776
            MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS
Sbjct  721  MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS  780

Query  777  IPSGAGLRIFYRNHRLQEDDKWRQ  800
            IPSGAGLRIFYRNHRLQEDDKWRQ
Sbjct  781  IPSGAGLRIFYRNHRLQEDDKWRQ  804

6) CSSP291_01645 in NC_020260


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1230 bits (4666),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 764/804 (96%), Positives = 786/804 (98%), Gaps = 4/804 (0%)

Query  1    MAVSKFTLHNAPTTGGSNEAAVAFSWNNPKKAVNPYLDPAEVAPESALSNLIALYAADNE  60
            MAVSK+TLH A TTGGSNEAA AF+WN PKKAVNPYLDPAE APESALSNLIALYA DNE
Sbjct  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60

Query  61   QEQLRREALSDEVWERYFFNESRDPVQREMEQDRLISRAKMAREQQRFNPDLVILADVNA  120
            QEQLRRE+LSDEVWERYFFNESRDPVQREMEQDRLI++AK AREQQRFNPDLVI+A+V A
Sbjct  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA  120

Query  121  MPSHISKPLLERIKYFHSLGRAKAYSRYLRETIRPCLERLERVRDSQVSASFRFMASHDG  180
             P+HISKPLLERIKYFHSLGRAKAYSRYL+ TIRPCLERLERVRDSQVSASFRFMASHDG
Sbjct  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180

Query  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240
            LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM
Sbjct  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240

Query  241  RLEIIPPAFEQLRRKKRRRKPVSYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300
            RLE+IPPAFEQLRRKKRRRKPV+YELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC
Sbjct  241  RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300

Query  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASNSNPAHRRN  360
            LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNASNSNPAHRRN
Sbjct  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360

Query  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420
            EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF
Sbjct  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420

Query  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITAMLRKFAIREDREEL  480
            AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITA+LRKFAIREDREEL
Sbjct  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480

Query  481  GTNTGPRFKSELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540
            G+NTGPRFK+ELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA
Sbjct  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540

Query  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600
            SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF
Sbjct  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600

Query  601  ATYIMKQGGVLIPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660
            ATYIMKQGGVL+PRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK
Sbjct  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660

Query  661  VRKAVDVQEAAADQGACAPW----TRGNNCPPVENLNKSGGDLPDIKTMDEKELQEYLHN  716
            VRKAVDVQEAAADQGACAPW    TRGNNCPPVENLNKSGGDLPDIKTM+EKELQ+YLHN
Sbjct  661  VRKAVDVQEAAADQGACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN  720

Query  717  MGQKERRELTARLRLVKPKRKKAYKQTISDQQRLQLEAELSSRGFDGSESEIDLLLRGGS  776
            MGQKERRELTARLRLVKPKRK  YKQ IS+QQRLQLEAEL++RGF+GS SEIDLLLRGGS
Sbjct  721  MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS  780

Query  777  IPSGAGLRIFYRNHRLQEDDKWRQ  800
            IPSGAGLRIFYRNHRLQEDDKWRQ
Sbjct  781  IPSGAGLRIFYRNHRLQEDDKWRQ  804

7) ECL_04434 in NC_014121


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1226 bits (4649),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 763/804 (95%), Positives = 784/804 (98%), Gaps = 4/804 (0%)

Query  1    MAVSKFTLHNAPTTGGSNEAAVAFSWNNPKKAVNPYLDPAEVAPESALSNLIALYAADNE  60
            MAVSK+TLH A TTGGSNEAA AF+WN PKKAVNPYLDPAE APESALSNLIALYA DNE
Sbjct  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60

Query  61   QEQLRREALSDEVWERYFFIESRDPVQREMEQDRLISRTKMAREQQRFNPDLVILADVNA  120
            QEQLRRE+LSDEVWERYFF ESRDPVQREMEQDRLI+++K AREQQRFNPDLVI+A+V A
Sbjct  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA  120

Query  121  MPPHISKPLLERIKYFHSLGRVKAYSRYLRETIRPCLERLERVRDSQVSASFRFMASHDG  180
             P+HISKPLLERIKYFHSLGR KAYSRYL+ TIRPCLERLERVRDSQVSASFRFMASHDG
Sbjct  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180

Query  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240
            LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM
Sbjct  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240

Query  241  RLEVIPPAFEQLrrkkrrrkPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300
            RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC
Sbjct  241  RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300

Query  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASNSNPAHRRN  360
            LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNASNSNPAHRRN
Sbjct  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360

Query  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420
            EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF
Sbjct  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420

Query  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITAMLRKFAIREDREEL  480
            AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITA+LRKFAIREDREEL
Sbjct  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480

Query  481  GTNTGPRFKSELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540
            G+NTGPRFK+ELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA
Sbjct  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540

Query  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600
            SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF
Sbjct  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600

Query  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660
            ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK
Sbjct  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660

Query  661  VRKAVDVQEAAADQGACAPW----TRGNNCPPVENLNKSGGDLPDIKTMDEKELQEYLHN  716
            VRKAVDVQEAAADQGACAPW    TRGNNCPPVENLNKSGGDLPDIKTM+EKELQ+YLHN
Sbjct  661  VRKAVDVQEAAADQGACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN  720

Query  717  MGQKERRELTARLRLVKPKRKKAYKQNISDQQRLQLEAELSSRGFDGSESEIDLLLRGGS  776
            MGQKERRELTARLRLVKPKRK  YKQNIS+QQRLQLEAEL++RGF+GS SEIDLLLRGGS
Sbjct  721  MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS  780

Query  777  IPSGGGLRIFYRNYRLQEDDKWRQ  800
            IPSG+GLRIFYRN RLQEDDKWRQ
Sbjct  781  IPSGAGLRIFYRNHRLQEDDKWRQ  804

8) CFSAN001992_19795 in NC_020307


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1220 bits (4628),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 764/804 (96%), Positives = 781/804 (98%), Gaps = 4/804 (0%)

Query  1    MAVSKFTLHNAPTTGGSNEAAVAFSWNNPKKAVNPYLDPADVAPESALSNLIALYAADNE  60
            MAVSK+TLH A TTGGSNEAA AF+WN PKKAVNPYLDPA+ APESALSNLIALYA DNE
Sbjct  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60

Query  61   QEQLRREALSDEVWERYFFNESRDPVQREMVQDRLISRAKMAREQQRFNPDLVILADVNA  120
            QEQLRRE+LSDEVWERYFFNESRDPVQREM QDRLI++AK AREQQRFNPDLVI+A+V A
Sbjct  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA  120

Query  121  MPPHISKPLLERIKYFHSLGREKAYSRYLRETIRPCLERLERVRDSQASASFRFMASHDG  180
             P+HISKPLLERIKYFHSLGR KAYSRYL+ TIRPCLERLERVRDSQ SASFRFMASHDG
Sbjct  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180

Query  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVCDDVKPEEIRQAWERVASEAM  240
            LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFV DDVKPEEIRQAWERVA+EAM
Sbjct  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240

Query  241  RLEVIPPAFEQLrrkkrrrkPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300
            RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC
Sbjct  241  RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300

Query  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASNSNPAHRRN  360
            LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNASNSNPAHRRN
Sbjct  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360

Query  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420
            EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF
Sbjct  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420

Query  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480
            AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL
Sbjct  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480

Query  481  GTNTGPRFKSELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540
            G+NTGPRFK+ELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA
Sbjct  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540

Query  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600
            SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF
Sbjct  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600

Query  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIVEGKICTHAVKWKK  660
            ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI EGKICTHAVKWKK
Sbjct  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660

Query  661  VRKAVDVQEAVADQGASAPW----TRGNNCPPVENTNKSGGDLPDIKAMNEKELQDYLHN  716
            VRKAVDVQEA ADQGA APW    TRGNNCPPVEN NKSGGDLPDIK+MNEKELQDYLHN
Sbjct  661  VRKAVDVQEAAADQGACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN  720

Query  717  MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLKAELTARGFEGSASEIDLLLRGGS  776
            MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQL AELTARGFEGSASEIDLLLRGGS
Sbjct  721  MGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGS  780

Query  777  IPSGAGLRIFYRNQRLQEDDRWRQ  800
            IPSGAGLRIFYRN+RLQEDD+WRQ
Sbjct  781  IPSGAGLRIFYRNHRLQEDDKWRQ  804

9) STM2729 in NC_003197


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1190 bits (4515),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 744/811 (92%), Positives = 774/811 (96%), Gaps = 11/811 (1%)

Query  1    MAVSKFTLHNAPTTGGSNEAAVVFPWNTPKKAVNPYLDPAEVAPESALSNLIALYAADNE  60
            MAVSK+TLH A TTGGSNEAA  FPWNTPKKAVNPYLDPAE APESALSNLIALYA DNE
Sbjct  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60

Query  61   QEQLRRETLSDEVWERYFFNESRDPVQREIEQDRLISHAKTAREQQRFNPDLVIIADVGA  120
            QEQLRRETLSDEVWERYFFNESRDPVQRE+EQDRLI+HAKTAREQQRFNPDLVIIA+VGA
Sbjct  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA  120

Query  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLRETIRPCLERLERVRDSQVSASFRFMASHDG  180
            QPAHISKPLLERIKYFHSLGRAKAYSRYL+ TIRPCLERLERVRDSQVSASFRFMASHDG
Sbjct  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180

Query  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240
            LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM
Sbjct  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240

Query  241  RLEVIPPAFEQLrrkkrrrkPVPYELIPPSLARMLCADWWCRKLWQMRCEWREEQLRAVC  300
            RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWW RKLWQMRCEWREEQLRAVC
Sbjct  241  RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300

Query  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360
            LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN
Sbjct  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360

Query  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420
            EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF
Sbjct  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420

Query  421  AAFRKAMHKTGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480
            AAFRKAMHK+GLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL
Sbjct  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480

Query  481  GTNTGPRFKSELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRPLRDSAEHVSAWA  540
            G+NTGPRFK+ELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGR+LRDSAEHVSAWA
Sbjct  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540

Query  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600
            SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF
Sbjct  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600

Query  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAMKWKK  660
            ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHA+KWKK
Sbjct  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660

Query  661  VRKAVDVQEAAADQGACAPW----TRGNNCPLAENLNQQEKDKSADGGTRTDITRMDDKE  716
            VRKAVDVQEAAADQGACAPW    TRGNNCP  ENLN+        GG   DI  M++KE
Sbjct  661  VRKAVDVQEAAADQGACAPWTRTRTRGNNCPPVENLNK-------SGGDLPDIKTMNEKE  713

Query  717  LHDYLYSMSKKDRRELAARLRLVKPKRRKDYKQRITDHQHQQLVYELKSRGFDGSEKEVD  776
            L+DYL +M++K+RREL+ARLRLVKPKR+  YKQ I+++Q+ QL  EL +RGF+GS  E+D
Sbjct  714  LQDYLHNMGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEID  773

Query  777  LLLRGGSIPSGAGLRIFYRNQRLKEDDKWRN  807
            LLLRGGSIPSGAGLRIFYRN+RL+EDDKWR+
Sbjct  774  LLLRGGSIPSGAGLRIFYRNHRLQEDDKWRQ  804

10) STMDT12_C27800 in NC_016860


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1190 bits (4515),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 744/811 (92%), Positives = 774/811 (96%), Gaps = 11/811 (1%)

Query  1    MAVSKFTLHNAPTTGGSNEAAVVFPWNTPKKAVNPYLDPAEVAPESALSNLIALYAADNE  60
            MAVSK+TLH A TTGGSNEAA  FPWNTPKKAVNPYLDPAE APESALSNLIALYA DNE
Sbjct  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60

Query  61   QEQLRRETLSDEVWERYFFNESRDPVQREIEQDRLISHAKTAREQQRFNPDLVIIADVGA  120
            QEQLRRETLSDEVWERYFFNESRDPVQRE+EQDRLI+HAKTAREQQRFNPDLVIIA+VGA
Sbjct  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA  120

Query  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLRETIRPCLERLERVRDSQVSASFRFMASHDG  180
            QPAHISKPLLERIKYFHSLGRAKAYSRYL+ TIRPCLERLERVRDSQVSASFRFMASHDG
Sbjct  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180

Query  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240
            LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM
Sbjct  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240

Query  241  RLEVIPPAFEQLrrkkrrrkPVPYELIPPSLARMLCADWWCRKLWQMRCEWREEQLRAVC  300
            RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWW RKLWQMRCEWREEQLRAVC
Sbjct  241  RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300

Query  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360
            LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN
Sbjct  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360

Query  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420
            EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF
Sbjct  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420

Query  421  AAFRKAMHKTGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480
            AAFRKAMHK+GLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL
Sbjct  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480

Query  481  GTNTGPRFKSELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRPLRDSAEHVSAWA  540
            G+NTGPRFK+ELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGR+LRDSAEHVSAWA
Sbjct  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540

Query  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600
            SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF
Sbjct  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600

Query  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAMKWKK  660
            ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHA+KWKK
Sbjct  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660

Query  661  VRKAVDVQEAAADQGACAPW----TRGNNCPLAENLNQQEKDKSADGGTRTDITRMDDKE  716
            VRKAVDVQEAAADQGACAPW    TRGNNCP  ENLN+        GG   DI  M++KE
Sbjct  661  VRKAVDVQEAAADQGACAPWTRTRTRGNNCPPVENLNK-------SGGDLPDIKTMNEKE  713

Query  717  LHDYLYSMSKKDRRELAARLRLVKPKRRKDYKQRITDHQHQQLVYELKSRGFDGSEKEVD  776
            L+DYL +M++K+RREL+ARLRLVKPKR+  YKQ I+++Q+ QL  EL +RGF+GS  E+D
Sbjct  714  LQDYLHNMGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEID  773

Query  777  LLLRGGSIPSGAGLRIFYRNQRLKEDDKWRN  807
            LLLRGGSIPSGAGLRIFYRN+RL+EDDKWR+
Sbjct  774  LLLRGGSIPSGAGLRIFYRNHRLQEDDKWRQ  804

11) STU288_13805 in NC_021151


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1190 bits (4515),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 744/811 (92%), Positives = 774/811 (96%), Gaps = 11/811 (1%)

Query  1    MAVSKFTLHNAPTTGGSNEAAVVFPWNTPKKAVNPYLDPAEVAPESALSNLIALYAADNE  60
            MAVSK+TLH A TTGGSNEAA  FPWNTPKKAVNPYLDPAE APESALSNLIALYA DNE
Sbjct  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60

Query  61   QEQLRRETLSDEVWERYFFNESRDPVQREIEQDRLISHAKTAREQQRFNPDLVIIADVGA  120
            QEQLRRETLSDEVWERYFFNESRDPVQRE+EQDRLI+HAKTAREQQRFNPDLVIIA+VGA
Sbjct  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA  120

Query  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLRETIRPCLERLERVRDSQVSASFRFMASHDG  180
            QPAHISKPLLERIKYFHSLGRAKAYSRYL+ TIRPCLERLERVRDSQVSASFRFMASHDG
Sbjct  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180

Query  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240
            LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM
Sbjct  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240

Query  241  RLEVIPPAFEQLrrkkrrrkPVPYELIPPSLARMLCADWWCRKLWQMRCEWREEQLRAVC  300
            RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWW RKLWQMRCEWREEQLRAVC
Sbjct  241  RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300

Query  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360
            LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN
Sbjct  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360

Query  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420
            EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF
Sbjct  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420

Query  421  AAFRKAMHKTGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480
            AAFRKAMHK+GLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL
Sbjct  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480

Query  481  GTNTGPRFKSELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRPLRDSAEHVSAWA  540
            G+NTGPRFK+ELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGR+LRDSAEHVSAWA
Sbjct  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540

Query  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600
            SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF
Sbjct  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600

Query  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAMKWKK  660
            ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHA+KWKK
Sbjct  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660

Query  661  VRKAVDVQEAAADQGACAPW----TRGNNCPLAENLNQQEKDKSADGGTRTDITRMDDKE  716
            VRKAVDVQEAAADQGACAPW    TRGNNCP  ENLN+        GG   DI  M++KE
Sbjct  661  VRKAVDVQEAAADQGACAPWTRTRTRGNNCPPVENLNK-------SGGDLPDIKTMNEKE  713

Query  717  LHDYLYSMSKKDRRELAARLRLVKPKRRKDYKQRITDHQHQQLVYELKSRGFDGSEKEVD  776
            L+DYL +M++K+RREL+ARLRLVKPKR+  YKQ I+++Q+ QL  EL +RGF+GS  E+D
Sbjct  714  LQDYLHNMGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEID  773

Query  777  LLLRGGSIPSGAGLRIFYRNQRLKEDDKWRN  807
            LLLRGGSIPSGAGLRIFYRN+RL+EDDKWR+
Sbjct  774  LLLRGGSIPSGAGLRIFYRNHRLQEDDKWRQ  804

12) SeD_A3057 in NC_011205


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1163 bits (4410),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 703/790 (89%), Positives = 761/790 (97%), Gaps = 4/790 (0%)

Query  10   SGFNEAAAAFSWNSPKKAINPYLDPAEVAPVSALSNLITLYAADNEQEQLRREALSDQVW  69
            +G NEAAAAF+WN+PKKA+NPYLDPAE AP SALSNLI+LYA DNEQEQLRRE+LSD+VW
Sbjct  15   GGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVW  74

Query  70   ERYFFNESRDPVQREMEQDKLISRAKLAHEQQRFNPDMVILADVNAQPSHISKPLMQRIE  129
            ERYFFNESRDPVQREMEQD+LI++AK A+EQQRFNPD+VI+A+V AQP+HISKPL++RI 
Sbjct  75   ERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIK  134

Query  130  YFSSLGRPKAYSRYLRETIKPCLERLEHVRDSQLSTSFRFMASHEGLDGLLILPEMSQDQ  189
            YF SLGR+KAYSRYL+ TI+PCLERLE+VRDSQ+S+SFRFMASH+GL+GLL+LPEM+QDQ
Sbjct  135  YFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQ  194

Query  190  VKRLSTLVAAHMSMCLDAACGDLYATDDVKPEEIRKTWEKVAAETLRLDVIPPAFEQLRR  249
            VKRLSTLVAAHMSMCLDAACGDL+ +DDVKPEEIR++WE+VAAE++RL+VIPPAFEQLRR
Sbjct  195  VKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  250  KRNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYEV  309
            K+ RRKPVPYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYE 
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  310  VMHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAE  369
            V+HKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIAE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  370  MRGDCAVFYTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGIFAAFRKAMLKAGLRW  429
            MRGDCAVFYTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+ FAAFRKAM KAGLRW
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRW  434

Query  430  YGVRVAEPHHDGTVHWHLLCFMRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELIN  489
            YGVRVAEPHHDGTVHWHLLCFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELIN
Sbjct  435  YGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELIN  494

Query  490  PRKGTPTSYIAKYISKNIDGRGLAGGISKETGKSLRDNAEYVNAWASLHRVQQFRFFGIP  549
            PRKGTPTSYIAKYISKNIDGRGLA  ISKETG+SLRD+AE V+AWASLHRVQQFRFFGIP
Sbjct  495  PRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIP  554

Query  550  GRQAYRELRLLAGQAARQQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMKQGGVLVPR  609
            GRQAYRELRLLAGQAAR QG++KAGAPVLDNPRLDA+LAAADAGCFATYIMKQGGVLVPR
Sbjct  555  GRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPR  614

Query  610  KYHLIRTAYEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQ  669
            K HL+RTAYE+N+EP+AYGDHGIRIYGIWSPIAEGKICTHAVKWK VRKAVDVQEAAADQ
Sbjct  615  KHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAADQ  674

Query  670  GACAPW----TRGNNCPPVENTNKSGGDLPDIKTMNEKELQDYLHNMGQKERRELTARLR  725
            GACAPW    TRGNNCPPVEN NKSGGDLPDIKTMNEKELQDYLHNMGQKERRELTARLR
Sbjct  675  GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHNMGQKERRELTARLR  734

Query  726  LVKPKRKTVYKQNISEQQRLQLKAELTARGFEGSASEIDLLLRGGSIPSGAGLRIFYRNQ  785
            LVKPKRKTVYKQNISEQQRLQL AELTARGFEGSASEIDLLLRGGSIPSGAGLRIFYRN+
Sbjct  735  LVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAGLRIFYRNH  794

Query  786  RLQEDDRWRQ  795
            RLQEDD+WRQ
Sbjct  795  RLQEDDKWRQ  804

13) SL1344_2701 in NC_016810


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1136 bits (4309),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 712/751 (95%), Positives = 728/751 (97%), Gaps = 4/751 (0%)

Query  1    MAVSKFTLHNAPTTGGSNEAAVAFSWNNPKKAVNPYLDPADVAPESALSNLIALYAADNE  60
            MAVSK+TLH A TTGGSNEAA AF+WN PKKAVNPYLDPA+ APESALSNLIALYA DNE
Sbjct  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60

Query  61   QEQLRREALSDEVWERYFFNESRDPVQREMVQDRLISRAKMAREQQRFNPDLVILADVNA  120
            QEQLRRE+LSDEVWERYFFNESRDPVQREM QDRLI++AK AREQQRFNPDLVI+A+V A
Sbjct  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA  120

Query  121  MPPHISKPLLERIKYFHSLGREKAYSRYLRETIRPCLERLERVRDSQASASFRFMASHDG  180
             P+HISKPLLERIKYFHSLGR KAYSRYL+ TIRPCLERLERVRDSQ SASFRFMASHDG
Sbjct  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180

Query  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVCDDVKPEEIRQAWERVASEAM  240
            LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFV DDVKPEEIRQAWERVA+EAM
Sbjct  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240

Query  241  RLEVIPPAFEQLrrkkrrrkPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300
            RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC
Sbjct  241  RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300

Query  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASNSNPAHRRN  360
            LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNASNSNPAHRRN
Sbjct  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360

Query  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420
            EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF
Sbjct  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420

Query  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480
            AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL
Sbjct  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480

Query  481  GTNTGPRFKSELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540
            G+NTGPRFK+ELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA
Sbjct  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540

Query  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600
            SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF
Sbjct  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600

Query  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIVEGKICTHAVKWKK  660
            ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI EGKICTHAVKWKK
Sbjct  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660

Query  661  VRKAVDVQEAVADQGASAPW----TRGNNCPPVENTNKSGGDLPDINAMNEKELQYYLHN  716
            VRKAVDVQEA ADQGA APW    TRGNNCPPVEN NKSGGDLPDI++MNEKELQ YLHN
Sbjct  661  VRKAVDVQEAAADQGACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN  720

Query  717  MGQKERRELTARLRLVKPKRKTVYKQNISEQ  747
            MGQKERRELTARLRLVKPKRKTVYKQNISEQ
Sbjct  721  MGQKERRELTARLRLVKPKRKTVYKQNISEQ  751

14) endph in NC_016857


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1136 bits (4309),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 712/751 (95%), Positives = 728/751 (97%), Gaps = 4/751 (0%)

Query  1    MAVSKFTLHNAPTTGGSNEAAVAFSWNNPKKAVNPYLDPADVAPESALSNLIALYAADNE  60
            MAVSK+TLH A TTGGSNEAA AF+WN PKKAVNPYLDPA+ APESALSNLIALYA DNE
Sbjct  1    MAVSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNE  60

Query  61   QEQLRREALSDEVWERYFFNESRDPVQREMVQDRLISRAKMAREQQRFNPDLVILADVNA  120
            QEQLRRE+LSDEVWERYFFNESRDPVQREM QDRLI++AK AREQQRFNPDLVI+A+V A
Sbjct  61   QEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGA  120

Query  121  MPPHISKPLLERIKYFHSLGREKAYSRYLRETIRPCLERLERVRDSQASASFRFMASHDG  180
             P+HISKPLLERIKYFHSLGR KAYSRYL+ TIRPCLERLERVRDSQ SASFRFMASHDG
Sbjct  121  QPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDG  180

Query  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVCDDVKPEEIRQAWERVASEAM  240
            LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFV DDVKPEEIRQAWERVA+EAM
Sbjct  181  LEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAM  240

Query  241  RLEVIPPAFEQLrrkkrrrkPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300
            RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC
Sbjct  241  RLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVC  300

Query  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASNSNPAHRRN  360
            LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNASNSNPAHRRN
Sbjct  301  LVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRN  360

Query  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420
            EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF
Sbjct  361  EMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTF  420

Query  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480
            AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL
Sbjct  421  AAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREEL  480

Query  481  GTNTGPRFKSELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540
            G+NTGPRFK+ELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA
Sbjct  481  GANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWA  540

Query  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600
            SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF
Sbjct  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600

Query  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIVEGKICTHAVKWKK  660
            ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI EGKICTHAVKWKK
Sbjct  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKK  660

Query  661  VRKAVDVQEAVADQGASAPW----TRGNNCPPVENTNKSGGDLPDINAMNEKELQYYLHN  716
            VRKAVDVQEA ADQGA APW    TRGNNCPPVEN NKSGGDLPDI++MNEKELQ YLHN
Sbjct  661  VRKAVDVQEAAADQGACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHN  720

Query  717  MGQKERRELTARLRLVKPKRKTVYKQNISEQ  747
            MGQKERRELTARLRLVKPKRKTVYKQNISEQ
Sbjct  721  MGQKERRELTARLRLVKPKRKTVYKQNISEQ  751

15) UMN798_2950 in NC_017046


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1132 bits (4292),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 709/749 (95%), Positives = 726/749 (97%), Gaps = 4/749 (0%)

Query  1    MSKFTLHNAPTTGGSNEAAVAFSWNNPKKAVNPYLDPADVAPESALSNLIALYAADNEQE  60
            +SK+TLH A TTGGSNEAA AF+WN PKKAVNPYLDPA+ APESALSNLIALYA DNEQE
Sbjct  3    VSKITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQE  62

Query  61   QLRREALSDEVWERYFFNESRDPVQREMVQDRLISRAKMAREQQRFNPDLVILADVNAMP  120
            QLRRE+LSDEVWERYFFNESRDPVQREM QDRLI++AK AREQQRFNPDLVI+A+V A P
Sbjct  63   QLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQP  122

Query  121  PHISKPLLERIKYFHSLGREKAYSRYLRETIRPCLERLERVRDSQASASFRFMASHDGLE  180
            +HISKPLLERIKYFHSLGR KAYSRYL+ TIRPCLERLERVRDSQ SASFRFMASHDGLE
Sbjct  123  AHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLE  182

Query  181  GLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVCDDVKPEEIRQAWERVASEAMRL  240
            GLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFV DDVKPEEIRQAWERVA+EAMRL
Sbjct  183  GLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRL  242

Query  241  EVIPPAFEQLrrkkrrrkPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLV  300
            EVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLV
Sbjct  243  EVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLV  302

Query  301  NKKASPYVSYEAVIHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASNSNPAHRRNEM  360
            NKKASPYVSYEAVIHKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNASNSNPAHRRNEM
Sbjct  303  NKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEM  362

Query  361  MACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAA  420
            MACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAA
Sbjct  363  MACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAA  422

Query  421  FRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGT  480
            FRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELG+
Sbjct  423  FRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGA  482

Query  481  NTGPRFKSELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASL  540
            NTGPRFK+ELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASL
Sbjct  483  NTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASL  542

Query  541  HRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFAT  600
            HRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFAT
Sbjct  543  HRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFAT  602

Query  601  YIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIVEGKICTHAVKWKKVR  660
            YIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI EGKICTHAVKWKKVR
Sbjct  603  YIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVR  662

Query  661  KAVDVQEAVADQGASAPW----TRGNNCPPVENTNKSGGDLPDINAMNEKELQYYLHNMG  716
            KAVDVQEA ADQGA APW    TRGNNCPPVEN NKSGGDLPDI++MNEKELQ YLHNMG
Sbjct  663  KAVDVQEAAADQGACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHNMG  722

Query  717  QKERRELTARLRLVKPKRKTVYKQNISEQ  745
            QKERRELTARLRLVKPKRKTVYKQNISEQ
Sbjct  723  QKERRELTARLRLVKPKRKTVYKQNISEQ  751

16) STY3668 in NC_003198


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1117 bits (4235),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 670/797 (85%), Positives = 747/797 (94%), Gaps = 11/797 (1%)

Query  10   SGFNEAAAAFSWNSPKKAINPYLDLAEVAPVSALSNLITLYAADNEQEQLRREALSDQVW  69
            +G NEAAAAF+WN+PKKA+NPYLD AE AP SALSNLI+LYA DNEQEQLRRE+LSD+VW
Sbjct  15   GGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVW  74

Query  70   ERYFFNESRDPVQREMEQDKFISRAKLAHEQQRFNPDMVILADVNAQPSHISRPLMQRIE  129
            ERYFFNESRDPVQREMEQD++I++AK A+EQQRFNPD+VI+A+V AQP+HIS+PL++RI 
Sbjct  75   ERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIK  134

Query  130  YFSSLGRPKAYSRYLRETIKPCLERLEHVRDSQLSTSFRFMASHEGLDGLLILPEMSQDQ  189
            YF SLGR+KAYSRYL+ TI+PCLERLE+VRDSQ+S+SFRFMASH+GL+GLL+LPEM+QDQ
Sbjct  135  YFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQ  194

Query  190  VKRLSTLVAAHMSMCLDAACGDLYATDDVKPEEIRKTWEKVAAETLRLDVIPPAFEQLRR  249
            VKRLSTLVAAHMSMCLDAACGDL+ +DDVKPEEIR++WE+VAAE++RL+VIPPAFEQLRR
Sbjct  195  VKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  250  KRNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYEA  309
            K+ RRKPVPYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYEA
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  310  MMHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAE  369
            ++HKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIAE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  370  MRGDCAVFYTITCPSRFHSTLNNGRPNPTWTNTTVRQSSDYLVGMFAAFRKAMHKAGLRW  429
            MRGDCAVFYTITCPSRFH+TLNNGRPNP WT++TVRQSSDYLV+ FAAFRKAMHKAGLRW
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRW  434

Query  430  YGVRVAEPHHDGTVHWHLLCFMRKKDRRTITALLRKFAIREDREELGNNTGPRFKSELIN  489
            YGVRVAEPHHDGTVHWHLLCFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELIN
Sbjct  435  YGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELIN  494

Query  490  PRKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGIP  549
            PRKGTPTSYIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGIP
Sbjct  495  PRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIP  554

Query  550  GRQAYRELRLLAGQAARQQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMKQGGVLVPR  609
            GRQAYRELRLLAGQAAR QG++KAGAPVLDNPRLDA+LAAADAGCFATYIMKQGGVLVPR
Sbjct  555  GRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPR  614

Query  610  KYHLIRTAYEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQ  669
            K HL+RTAYE+N+EP+AYGDHGIRIYGIWSPIAEGKICTHAVKWK VRKAVDVQEAAADQ
Sbjct  615  KHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAADQ  674

Query  670  GACAPW----TRGNNCPLAENLNQHEKDKSADGDTRTDITCMDDKELHDYLHSMGKKEHR  725
            GACAPW    TRGNNCP  ENLN+        G+   DI  M++KEL+DYLH+MG+KE+R
Sbjct  675  GACAPWTRTRTRGNNCPPVENLNK-------SGGDLPDIKTMNEKELQDYLHNMGQKERR  727

Query  726  ELAARLRLVKPKRRKDHKQRITEHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGL  785
            EL+ARLRLVKPKR+   KQ I+E+QR QL  EL +RGF+GS  E+DLLLRGGSIPSGAGL
Sbjct  728  ELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAGL  787

Query  786  RIFYRNQRLQEDDKWRD  802
            RIFYRN+RLQEDDKWR+
Sbjct  788  RIFYRNHRLQEDDKWRQ  804

17) STBHUCCB_35930 in NC_016832


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1117 bits (4235),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 670/797 (85%), Positives = 747/797 (94%), Gaps = 11/797 (1%)

Query  10   SGFNEAAAAFSWNSPKKAINPYLDLAEVAPVSALSNLITLYAADNEQEQLRREALSDQVW  69
            +G NEAAAAF+WN+PKKA+NPYLD AE AP SALSNLI+LYA DNEQEQLRRE+LSD+VW
Sbjct  15   GGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVW  74

Query  70   ERYFFNESRDPVQREMEQDKFISRAKLAHEQQRFNPDMVILADVNAQPSHISRPLMQRIE  129
            ERYFFNESRDPVQREMEQD++I++AK A+EQQRFNPD+VI+A+V AQP+HIS+PL++RI 
Sbjct  75   ERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIK  134

Query  130  YFSSLGRPKAYSRYLRETIKPCLERLEHVRDSQLSTSFRFMASHEGLDGLLILPEMSQDQ  189
            YF SLGR+KAYSRYL+ TI+PCLERLE+VRDSQ+S+SFRFMASH+GL+GLL+LPEM+QDQ
Sbjct  135  YFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQ  194

Query  190  VKRLSTLVAAHMSMCLDAACGDLYATDDVKPEEIRKTWEKVAAETLRLDVIPPAFEQLRR  249
            VKRLSTLVAAHMSMCLDAACGDL+ +DDVKPEEIR++WE+VAAE++RL+VIPPAFEQLRR
Sbjct  195  VKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  250  KRNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYEA  309
            K+ RRKPVPYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYEA
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  310  MMHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAE  369
            ++HKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIAE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  370  MRGDCAVFYTITCPSRFHSTLNNGRPNPTWTNTTVRQSSDYLVGMFAAFRKAMHKAGLRW  429
            MRGDCAVFYTITCPSRFH+TLNNGRPNP WT++TVRQSSDYLV+ FAAFRKAMHKAGLRW
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRW  434

Query  430  YGVRVAEPHHDGTVHWHLLCFMRKKDRRTITALLRKFAIREDREELGNNTGPRFKSELIN  489
            YGVRVAEPHHDGTVHWHLLCFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELIN
Sbjct  435  YGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELIN  494

Query  490  PRKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGIP  549
            PRKGTPTSYIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGIP
Sbjct  495  PRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIP  554

Query  550  GRQAYRELRLLAGQAARQQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMKQGGVLVPR  609
            GRQAYRELRLLAGQAAR QG++KAGAPVLDNPRLDA+LAAADAGCFATYIMKQGGVLVPR
Sbjct  555  GRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPR  614

Query  610  KYHLIRTAYEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQ  669
            K HL+RTAYE+N+EP+AYGDHGIRIYGIWSPIAEGKICTHAVKWK VRKAVDVQEAAADQ
Sbjct  615  KHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAADQ  674

Query  670  GACAPW----TRGNNCPLAENLNQHEKDKSADGDTRTDITCMDDKELHDYLHSMGKKEHR  725
            GACAPW    TRGNNCP  ENLN+        G+   DI  M++KEL+DYLH+MG+KE+R
Sbjct  675  GACAPWTRTRTRGNNCPPVENLNK-------SGGDLPDIKTMNEKELQDYLHNMGQKERR  727

Query  726  ELAARLRLVKPKRRKDHKQRITEHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGL  785
            EL+ARLRLVKPKR+   KQ I+E+QR QL  EL +RGF+GS  E+DLLLRGGSIPSGAGL
Sbjct  728  ELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAGL  787

Query  786  RIFYRNQRLQEDDKWRD  802
            RIFYRN+RLQEDDKWR+
Sbjct  788  RIFYRNHRLQEDDKWRQ  804

18) TY21A_17255 in NC_021176


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1117 bits (4235),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 670/797 (85%), Positives = 747/797 (94%), Gaps = 11/797 (1%)

Query  10   SGFNEAAAAFSWNSPKKAINPYLDLAEVAPVSALSNLITLYAADNEQEQLRREALSDQVW  69
            +G NEAAAAF+WN+PKKA+NPYLD AE AP SALSNLI+LYA DNEQEQLRRE+LSD+VW
Sbjct  15   GGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVW  74

Query  70   ERYFFNESRDPVQREMEQDKFISRAKLAHEQQRFNPDMVILADVNAQPSHISRPLMQRIE  129
            ERYFFNESRDPVQREMEQD++I++AK A+EQQRFNPD+VI+A+V AQP+HIS+PL++RI 
Sbjct  75   ERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIK  134

Query  130  YFSSLGRPKAYSRYLRETIKPCLERLEHVRDSQLSTSFRFMASHEGLDGLLILPEMSQDQ  189
            YF SLGR+KAYSRYL+ TI+PCLERLE+VRDSQ+S+SFRFMASH+GL+GLL+LPEM+QDQ
Sbjct  135  YFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQ  194

Query  190  VKRLSTLVAAHMSMCLDAACGDLYATDDVKPEEIRKTWEKVAAETLRLDVIPPAFEQLRR  249
            VKRLSTLVAAHMSMCLDAACGDL+ +DDVKPEEIR++WE+VAAE++RL+VIPPAFEQLRR
Sbjct  195  VKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  250  KRNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYEA  309
            K+ RRKPVPYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYEA
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  310  MMHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAE  369
            ++HKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIAE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  370  MRGDCAVFYTITCPSRFHSTLNNGRPNPTWTNTTVRQSSDYLVGMFAAFRKAMHKAGLRW  429
            MRGDCAVFYTITCPSRFH+TLNNGRPNP WT++TVRQSSDYLV+ FAAFRKAMHKAGLRW
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRW  434

Query  430  YGVRVAEPHHDGTVHWHLLCFMRKKDRRTITALLRKFAIREDREELGNNTGPRFKSELIN  489
            YGVRVAEPHHDGTVHWHLLCFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELIN
Sbjct  435  YGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELIN  494

Query  490  PRKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGIP  549
            PRKGTPTSYIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGIP
Sbjct  495  PRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIP  554

Query  550  GRQAYRELRLLAGQAARQQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMKQGGVLVPR  609
            GRQAYRELRLLAGQAAR QG++KAGAPVLDNPRLDA+LAAADAGCFATYIMKQGGVLVPR
Sbjct  555  GRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPR  614

Query  610  KYHLIRTAYEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQ  669
            K HL+RTAYE+N+EP+AYGDHGIRIYGIWSPIAEGKICTHAVKWK VRKAVDVQEAAADQ
Sbjct  615  KHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAADQ  674

Query  670  GACAPW----TRGNNCPLAENLNQHEKDKSADGDTRTDITCMDDKELHDYLHSMGKKEHR  725
            GACAPW    TRGNNCP  ENLN+        G+   DI  M++KEL+DYLH+MG+KE+R
Sbjct  675  GACAPWTRTRTRGNNCPPVENLNK-------SGGDLPDIKTMNEKELQDYLHNMGQKERR  727

Query  726  ELAARLRLVKPKRRKDHKQRITEHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGL  785
            EL+ARLRLVKPKR+   KQ I+E+QR QL  EL +RGF+GS  E+DLLLRGGSIPSGAGL
Sbjct  728  ELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAGL  787

Query  786  RIFYRNQRLQEDDKWRD  802
            RIFYRN+RLQEDDKWR+
Sbjct  788  RIFYRNHRLQEDDKWRQ  804

19) t3410 in NC_004631


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1117 bits (4235),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 670/797 (85%), Positives = 747/797 (94%), Gaps = 11/797 (1%)

Query  10   SGFNEAAAAFSWNSPKKAINPYLDLAEVAPVSALSNLITLYAADNEQEQLRREALSDQVW  69
            +G NEAAAAF+WN+PKKA+NPYLD AE AP SALSNLI+LYA DNEQEQLRRE+LSD+VW
Sbjct  15   GGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVW  74

Query  70   ERYFFNESRDPVQREMEQDKFISRAKLAHEQQRFNPDMVILADVNAQPSHISRPLMQRIE  129
            ERYFFNESRDPVQREMEQD++I++AK A+EQQRFNPD+VI+A+V AQP+HIS+PL++RI 
Sbjct  75   ERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIK  134

Query  130  YFSSLGRPKAYSRYLRETIKPCLERLEHVRDSQLSTSFRFMASHEGLDGLLILPEMSQDQ  189
            YF SLGR+KAYSRYL+ TI+PCLERLE+VRDSQ+S+SFRFMASH+GL+GLL+LPEM+QDQ
Sbjct  135  YFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQ  194

Query  190  VKRLSTLVAAHMSMCLDAACGDLYATDDVKPEEIRKTWEKVAAETLRLDVIPPAFEQLRR  249
            VKRLSTLVAAHMSMCLDAACGDL+ +DDVKPEEIR++WE+VAAE++RL+VIPPAFEQLRR
Sbjct  195  VKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  250  KRNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYEA  309
            K+ RRKPVPYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYEA
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  310  MMHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAE  369
            ++HKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIAE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  370  MRGDCAVFYTITCPSRFHSTLNNGRPNPTWTNTTVRQSSDYLVGMFAAFRKAMHKAGLRW  429
            MRGDCAVFYTITCPSRFH+TLNNGRPNP WT++TVRQSSDYLV+ FAAFRKAMHKAGLRW
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRW  434

Query  430  YGVRVAEPHHDGTVHWHLLCFMRKKDRRTITALLRKFAIREDREELGNNTGPRFKSELIN  489
            YGVRVAEPHHDGTVHWHLLCFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELIN
Sbjct  435  YGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELIN  494

Query  490  PRKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGIP  549
            PRKGTPTSYIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGIP
Sbjct  495  PRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIP  554

Query  550  GRQAYRELRLLAGQAARQQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMKQGGVLVPR  609
            GRQAYRELRLLAGQAAR QG++KAGAPVLDNPRLDA+LAAADAGCFATYIMKQGGVLVPR
Sbjct  555  GRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPR  614

Query  610  KYHLIRTAYEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQ  669
            K HL+RTAYE+N+EP+AYGDHGIRIYGIWSPIAEGKICTHAVKWK VRKAVDVQEAAADQ
Sbjct  615  KHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAADQ  674

Query  670  GACAPW----TRGNNCPLAENLNQHEKDKSADGDTRTDITCMDDKELHDYLHSMGKKEHR  725
            GACAPW    TRGNNCP  ENLN+        G+   DI  M++KEL+DYLH+MG+KE+R
Sbjct  675  GACAPWTRTRTRGNNCPPVENLNK-------SGGDLPDIKTMNEKELQDYLHNMGQKERR  727

Query  726  ELAARLRLVKPKRRKDHKQRITEHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGL  785
            EL+ARLRLVKPKR+   KQ I+E+QR QL  EL +RGF+GS  E+DLLLRGGSIPSGAGL
Sbjct  728  ELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAGL  787

Query  786  RIFYRNQRLQEDDKWRD  802
            RIFYRN+RLQEDDKWR+
Sbjct  788  RIFYRNHRLQEDDKWRQ  804

20) ECB_00825 in NC_012967


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1111 bits (4211),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 666/797 (84%), Positives = 743/797 (94%), Gaps = 11/797 (1%)

Query  10   SGFNEAAAAFSWNGSKKAINPYLDPAEVAPESALSNLITLYAADNEQEQLRREALSEQVW  69
            +G NEAAAAF+WN +KKA+NPYLDPAE APESALSNLI+LYA DNEQEQLRRE+LS++VW
Sbjct  15   GGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVW  74

Query  70   ERYFFNESRDPVQREMEQDKLISRAKLAHEQQRFNPDMVILADVNAQPSHISKPLMQRIE  129
            ERYFFNESRDPVQREMEQD+LI++AK A+EQQRFNPD+VI+A+V AQP+HISKPL++RI 
Sbjct  75   ERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIK  134

Query  130  YFSSLGRPKAYSRYLRETIKPCLERLDCVRDSQLSVSFRFMASHQGLEGLLILPEMSQDQ  189
            YF SLGR+KAYSRYL+ TI+PCLERL+ VRDSQ+S SFRFMASH+GLEGLL+LPEM+QDQ
Sbjct  135  YFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQ  194

Query  190  VKRLSTLVAAHMSMCLEDACGDLYATDDVKPEEIRKTWEKVAAETLRLDVIPPAFEKLRR  249
            VKRLSTLVAAHMSMCL+ ACGDL+ +DDVKPEEIR++WE+VAAE++RL+VIPPAFE+LRR
Sbjct  195  VKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  250  KINRRKPVLYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYEA  309
            K  RRKPV YELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYEA
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  310  VMHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAE  369
            V+HKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIAE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  370  MRSDCAVFYTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKAELRW  429
            MR+DCAVFYTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+ FAAFRKAMHKA LRW
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRW  434

Query  430  YGVRVAEPHHDGTVHWHLMCFMRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELIN  489
            YGVRVAEPHHDGTVHWHL+CFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELIN
Sbjct  435  YGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELIN  494

Query  490  PRKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGIP  549
            PRKGTPTSYIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGIP
Sbjct  495  PRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIP  554

Query  550  GRQAYRELRLLAGQAARQQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMKQGGVLVPR  609
            GRQAYRELRLLAGQAAR QG++KAGAPVLDNPRLDA+LAAADAGCFATYIMKQGGVLVPR
Sbjct  555  GRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPR  614

Query  610  KYHLIRTAYEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQ  669
            K HL+RTAYE+N+EP+AYGDHGIRIYGIWSPIAEGKICTHAVKWK VRKAVDVQEAAADQ
Sbjct  615  KHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAADQ  674

Query  670  GACAPW----TRGNNCPLAENLNQQGKDKSADGDSRTDITRMNDKELHNYLHSMSKKERR  725
            GACAPW    TRGNNCP  ENLN+ G D +       DI  MN+KEL++YLH+M++KERR
Sbjct  675  GACAPWTRTRTRGNNCPPVENLNKSGGDLP-------DIKTMNEKELQDYLHNMGQKERR  727

Query  726  ELAARLRQVKPKRRKDYKQRITDHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGL  785
            EL+ARLR VKPKR+  YKQ I+++QR QL  EL +RGF+GS  E+DLLLRGGSIPSGAGL
Sbjct  728  ELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAGL  787

Query  786  RIFYRNQRLKEDDKWRN  802
            RIFYRN+RL+EDDKWR+
Sbjct  788  RIFYRNHRLQEDDKWRQ  804

21) c0942 in NC_004431


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1106 bits (4193),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 671/799 (84%), Positives = 748/799 (94%), Gaps = 11/799 (1%)

Query  8    NSSGFNEAAASFSWNGPKKAINPYLDPAEVAPESALSNLITLYAADNEQEQLRREALSEQ  67
             ++G NEAAA+F+WN PKKA+NPYLDPAE APESALSNLI+LYA DNEQEQLRRE+LS++
Sbjct  13   TTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDE  72

Query  68   VWERYFFNESRDPVQREMEQDKLISRAKLAHEQQRFNPDMVILADVNAQPSHISKPLMQR  127
            VWERYFFNESRDPVQREMEQD+LI++AK A+EQQRFNPD+VI+A+V AQP+HISKPL++R
Sbjct  73   VWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLER  132

Query  128  IEYFSSLGRPKAYSRYLRETIKPCLERLEHIRDSQLSTSFRFMASHEGLDGLLILPEMSQ  187
            I YF SLGR+KAYSRYL+ TI+PCLERLE++RDSQ+S+SFRFMASH+GL+GLL+LPEM+Q
Sbjct  133  IKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQ  192

Query  188  EQVKRLSTLVAAHMSMCLDAACGDLYATDDVKPEEIRKTWERVAAETLRLDVIPPAFEQL  247
            +QVKRLSTLVAAHMSMCLDAACGDL+ +DDVKPEEIR++WERVAAE++RL+VIPPAFEQL
Sbjct  193  DQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQL  252

Query  248  RRKRNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSY  307
            RRK+ RRKPVPYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSY
Sbjct  253  RRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSY  312

Query  308  EAVMHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELI  367
            EAV+HKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELI
Sbjct  313  EAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELI  372

Query  368  AEMRGDCAVFYTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKAGL  427
            AEMRGDCAVFYTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+ FAAFRKAMHKAGL
Sbjct  373  AEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGL  432

Query  428  RWYGVRVAEPHHDGTVHWHLLCFMRKKDRRAITALLCKFAIREDREELGNNTGPRFKSEL  487
            RWYGVRVAEPHHDGTVHWHLLCFMRKKDRR+ITALL KFAIREDREELG NTGPRFK+EL
Sbjct  433  RWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPEL  492

Query  488  INPRKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFG  547
            INPRKGTPTSYIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFG
Sbjct  493  INPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFG  552

Query  548  IPGRQAYRELRLLAGQAARQQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMKQGGVLV  607
            IPGRQAYRELRLLAGQAAR QG++KAGAPVLDNPRLDA+LAAADAGCFATYIMKQGGVLV
Sbjct  553  IPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLV  612

Query  608  PRKYHLIRTAYEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAVA  667
            PRK HL+RTAYE+N+EP+AYGDHGIRIYGIWSPIAEGKICTHAVKWK VRKAVDVQEA A
Sbjct  613  PRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAA  672

Query  668  DQGACAPW----TRGNNCPLAENLNQQAKDKSADGDTRTDITRMDDKELHDYLHSMSKKe  723
            DQGACAPW    TRGNNCP  ENLN+        G+   DI  M++KEL+DYLH+M++KE
Sbjct  673  DQGACAPWTRTRTRGNNCPPVENLNK-------SGGDLPDIKTMNEKELQDYLHNMGQKE  725

Query  724  rrelaarlrlVKPKRRKDYKQRITDHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGA  783
            RREL+ARLRLVKPKR+  YKQ I+++QR QL  EL +RGF+GS  E+DLLLRGGSIPSGA
Sbjct  726  RRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGA  785

Query  784  GLRIFYRNQRLQEDDKWRN  802
            GLRIFYRN+RLQEDDKWR+
Sbjct  786  GLRIFYRNHRLQEDDKWRQ  804

22) LF82_407 in NC_011993


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1103 bits (4181),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 673/796 (85%), Positives = 749/796 (95%), Gaps = 11/796 (1%)

Query  11   GFNEAAAAFSWNSPKKAINPYLDPAEVAPVSTLSNLITLYAADNEQEQLRREALSDQVWE  70
            G NEAAAAF+WN+PKKA+NPYLDPAE AP S+LSNLI+LYA DNEQEQLRRE+LSD+VWE
Sbjct  16   GSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVWE  75

Query  71   RYFFNESRDPVQREMEQDKLISRAKLAHEQQRFNSDMVILADVNAQPSHISKPLMQRIEY  130
            RYFFNESRDPVQREMEQD+LI++AK A+EQQRFN+D+VI+A+V AQP+HISKPL++RI Y
Sbjct  76   RYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKY  135

Query  131  FSSLGRPKAYSRYLRETIKPCLERLEHVRDSQLSASFRFMASHEGLDGLLILPEMSQDQV  190
            F SLGR+KAYSRYL+ TI+PCLERLE+VRDSQ+SASFRFMASH+GL+GLL+LPEM+QDQV
Sbjct  136  FHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  191  KRLSTLVAAHMSMCLDAACGDLYATDDVKPEEIRKTWEKVAAETLRLDVIPPAFEQLRRK  250
            KRLSTLVAAHMSMCLDAACGDL+ +DDVKPEEIR++WE+VAAE++RL+VIPPAFEQLRRK
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRK  255

Query  251  RNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYEAV  310
            + RRKPVPYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYEAV
Sbjct  256  KRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAV  315

Query  311  MHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAEM  370
            +HKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIAEM
Sbjct  316  IHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEM  375

Query  371  RGDCAVFYTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKAGLRWY  430
            RGDCAVFYTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+ FAAFRKAMHKAGLRWY
Sbjct  376  RGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRWY  435

Query  431  GVRVAEPHHDGTVHWHLLCFMRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELINP  490
            GVRVAEPHHDGTVHWHLLCFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELINP
Sbjct  436  GVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELINP  495

Query  491  RKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGIPG  550
            RKGTPTSYIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGIPG
Sbjct  496  RKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIPG  555

Query  551  RQAYRELRLLAGQAARQQGDKNAGAPVLDNPRLDAILAAADAGCFATYIMKQGGVLVPRK  610
            RQAYRELRLLAGQAAR QG+++AGAPVLDNPRLDA+LAAADAGCFATYIMKQGGVLVPRK
Sbjct  556  RQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPRK  615

Query  611  YHLIRTAYEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQG  670
             HL+RTAYE+N+EP+AYGDHGIRIYGIWSPIAEGKICTHAVKWK VRKAVDVQEAAADQG
Sbjct  616  HHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAADQG  675

Query  671  ACAPW----TRGNNCPLAENLNQQGKDKSADGDTRTEITRMDDKELHDYLHSMSKKerre  726
            ACAPW    TRGNNCP  ENLN+ G D +       +I  M++KEL+DYLH+M++KERRE
Sbjct  676  ACAPWTRTRTRGNNCPPVENLNKSGGDLP-------DIKTMNEKELQDYLHNMGQKERRE  728

Query  727  laarlrlVKPKRRKDYKQRITDHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGLR  786
            L+ARLRLVKPKR+  YKQ I+++QR QL  EL +RGF+GS  E+DLLLRGGSIPSGAGLR
Sbjct  729  LTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAGLR  788

Query  787  IFYRNQRLQEDDKWRN  802
            IFYRN+RLQEDDKWR+
Sbjct  789  IFYRNHRLQEDDKWRQ  804

23) N559_1281 in NC_022082


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1102 bits (4177),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 683/799 (86%), Positives = 753/799 (95%), Gaps = 7/799 (0%)

Query  1    MSHHEVEKHGGAEDSAAAFAWNLPKKAINPYLDPAEVAPVSALSNLITLYAADNEQEQLR  60
            ++ H  +  GG++++AAAF+WN PKKA+NPYLDPAE AP SALSNLI+LYA DNEQEQLR
Sbjct  6    ITLHYAQTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLR  65

Query  61   REALSNEVWDRYFFNESRDPVQREMEQDRLISRAKMAREQQRFNPDLVILADVSAETSHI  120
            RE+LS+EVW+RYFFNESRDPVQREMEQDRLI++AK AREQQRFNPDLVI+A+V+A+ +HI
Sbjct  66   RETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHI  125

Query  121  SKPLLERIKYFEGLGKPKAYSRYLRETIRPCLERLERVRTSQVSASFRFMASHDGLEGLL  180
            SKPLLERIKYF++LG++KAYSRYL+ TIRPCLERLERVR SQVSASFRFMASHDGLEGLL
Sbjct  126  SKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLL  185

Query  181  VLPEMNQDQVKRLSTLVAAHMSMCLDAACGELFSDEDVTPEEIRRSWERVAAEAMRLDVI  240
            VLPEMNQDQVKRLSTLVAAHMSMCLDAACG+LF  +DV PEEIR++WERVAAEAMRL+VI
Sbjct  186  VLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVI  245

Query  241  PPAFEQLRRKKHRRNPVPYELIPGSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKK  300
            PPAFEQLRRKK+RR+PVPYELIP SLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKK
Sbjct  246  PPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKK  305

Query  301  ASPYVSYEAVIHKREQRRKSLEFFRSHELTNEQGDTLDMEDVVNASSSNPAHRRNEMMAC  360
            ASPYVSYEAVIHKREQRRKSLEFFRSHEL NE+GDTLDMEDVVNAS+SNPAHRRNEMMAC
Sbjct  306  ASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMAC  365

Query  361  VKGLELIAEMRGECAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVHMFAAFRK  420
            VKGLELIAEMRG+CAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLV+ FAAFRK
Sbjct  366  VKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRK  425

Query  421  AMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRKSITALLRKFAIREDREELGNNTG  480
            AMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDR+SITALLRKFAIREDREELG NTG
Sbjct  426  AMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTG  485

Query  481  PRFKSELINPRKGTPTSYIAKYISKNIDGRGLANEISKETGRSLRDNAEHVNAWASLHRV  540
            PRFK+ELINPRKGTPTSYIAKYISKNIDGRGLA+EISKETGRSLRD+AEHV+AWASLHRV
Sbjct  486  PRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRV  545

Query  541  QQFRFFGIPGRQAYrelrllagqaarqqaDKKAGAPVLDNPRLDAVLAAADAGCFATYIM  600
            QQFRFFGIPGRQAYRELRLLAGQAAR Q+++KAGAPVLDNPRLDAVLAAADAGCFATYIM
Sbjct  546  QQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIM  605

Query  601  KQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIIEGRICTHAMKWKMVRKAV  660
            KQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI EG+ICTHA+KWK VRKAV
Sbjct  606  KQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAV  665

Query  661  DVQEAPADQGACAPW----TRGNNCPPVEKMNYFESDLSGEKQLE--PLPDF-NSMSRKE  713
            DVQEA+ADQGACAPW    TRGNNCPPVE++N   +DL++ K ++   L D+ ++M++KE
Sbjct  666  DVQEAAADQGACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHNMGQKE  725

Query  714  LRELNARLRQVRPKRRKGYKQEINDRLRLQLEHELKSRGFDGSENEIDLLLRGGSIPSGA  773
             REL ARLR V+PKR+  YKQ+I+++ RLQLE EL +RGF+GS +EIDLLLRGGSIPSGA
Sbjct  726  RRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGA  785

Query  774  GLRLFYRNQRLQEDDKWRQ  792
            GLR+FYRN+RLQEDDKWRQ
Sbjct  786  GLRIFYRNHRLQEDDKWRQ  804

24) EcHS_A0918 in NC_009800


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1102 bits (4177),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 673/796 (85%), Positives = 748/796 (94%), Gaps = 11/796 (1%)

Query  11   GFNEAAAAFSWNSPKKAINPYLDPAEVAPVSTLSNLITLYAADNEQEQLRREALSDQVWE  70
            G NEAAAAF+WN+PKKA+NPYLDPAE AP S+LSNLI+LYA DNEQEQLRRE+LSD+VWE
Sbjct  16   GSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVWE  75

Query  71   RYFFNESRDPVQREMEQDKLISRAKLAHEQQRFNSDMVILADVNAQPSHISKPLMQRIEY  130
            RYFFNESRDPVQREMEQD+LI++AK A+EQQRFN+D+VI+A+V AQP+HISKPL++RI Y
Sbjct  76   RYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKY  135

Query  131  FSSLGRPKAYSRYLRETIKPCLERLEHVRDSQLSASFRFMASHEGLDGLLILPEMSQDQV  190
            F SLGR+KAYSRYL+ TI+PCLERLE+VRDSQ+SASFRFMASH+GL+GLL+LPEM+QDQV
Sbjct  136  FHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  191  KRLSTLVAAHMSMCLDAACGDLYATDDVKPEEIRKTWEKVAAETLRLDVIPPAFEQLRRK  250
            KRLSTLVAAHMSMCLDAACGDL+ +DDVKPEEIR++WE+VAAE++RL+VIPPAFEQLRRK
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRK  255

Query  251  RNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYEAV  310
            + RRKPVPYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYEAV
Sbjct  256  KRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAV  315

Query  311  MHKREQRRKSLEFFRSHELVNEDGDALDMEDVVNASSSNPAHRRNEMMACVKGLELIAEM  370
            +HKREQRRKSLEFFRSHEL+NEDGD+LDMEDVVNAS+SNPAHRRNEMMACVKGLELIAEM
Sbjct  316  IHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEM  375

Query  371  RGDCAVFYTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGTFAAFRKAMHKAGLRWY  430
            RGDCAVFYTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+TFAAFRKAMHKAGLRWY
Sbjct  376  RGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRWY  435

Query  431  GVRVAEPHHDGTVHWHLLCFMRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELINP  490
            GVRVAEPHHDGTVHWHLLCFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELINP
Sbjct  436  GVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELINP  495

Query  491  RKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGIPG  550
            RKGTPTSYIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGIPG
Sbjct  496  RKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIPG  555

Query  551  RQAYRELRLLAGQAARQQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMKQGGVLVPRK  610
            RQAYRELRLLAGQAAR QG++KAGAPVLDNPRLDA+LAAADAGCFATYIMKQGGVLVPRK
Sbjct  556  RQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPRK  615

Query  611  YHLIRTAYEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQG  670
             HL+RTAYE+N+EP+AYGDHGIRIYGIWSPIAEGKICTHAVKWK VRKAVDVQEAAADQG
Sbjct  616  HHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAADQG  675

Query  671  ACAPW----TRGNNCPLAENLNQQEKDKSADGDPRTDFTRMDDKELHDYLHSMNKKerre  726
            ACAPW    TRGNNCP  ENLN+        G+   D+  M++KEL+DYLH+M +KERRE
Sbjct  676  ACAPWTRTRTRGNNCPPVENLNK-------SGGDLPDIKTMNEKELQDYLHNMGQKERRE  728

Query  727  laarlrlVKPKRRRDYKQRITDHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGLR  786
            L+ARLRLVKPKR+  YKQ I+++QR QL  EL +RGF+GS  E+DLLLRGGSIPSGAGLR
Sbjct  729  LTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAGLR  788

Query  787  IFYRNQRLQEDDKWRN  802
            IFYRN+RLQEDDKWR+
Sbjct  789  IFYRNHRLQEDDKWRQ  804

25) APECO78_07960 in NC_020163


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1100 bits (4170),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 655/789 (84%), Positives = 736/789 (94%), Gaps = 11/789 (1%)

Query  4    SYSWNAEKKAINPYVETEEQSSVSALSNLIALYAADNEQEQLRREALSDQVWERYFFNES  63
            +++WN+ KKA+NPY++  E ++ SALSNLIALYA DNEQEQLRRE+LSD+VWERYFFNES
Sbjct  23   AFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNES  82

Query  64   RDPVQREMEQDKLISRAKLAHEQQRFNPDMVILADVNAQPSHISKPLMQRIEYFSSLGRP  123
            RDPVQREMEQD+LI++AK A+EQQRFNPD+VI+A+V AQP+HISKPL++RI YF SLGR+
Sbjct  83   RDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYFHSLGRA  142

Query  124  KAYSRYLRETIKPCLERLEHVRDCQLSTSFRFMASHEGLDGLLILPEMSQDQVKRLSTLV  183
            KAYSRYL+ TI+PCLERLE+VRD Q+S+SFRFMASH+GL+GLL+LPEM+QDQVKRLSTLV
Sbjct  143  KAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQVKRLSTLV  202

Query  184  AAHMSMCLDAACGDLYVTDDVKPEEIRKTWEKVAAETLHLDVIPPAFEQLRRKRNRRKPV  243
            AAHMSMCLDAACGDL+V+DDVKPEEIR++WE+VAAE+++L+VIPPAFEQLRRK+ RRKPV
Sbjct  203  AAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRKKRRRKPV  262

Query  244  PYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYEAVMHKREQR  303
            PYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYEAV+HKREQR
Sbjct  263  PYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAVIHKREQR  322

Query  304  RKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAEMRGDCAVF  363
            RKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIAEMRGDCAVF
Sbjct  323  RKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEMRGDCAVF  382

Query  364  YTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKAGLRWYGVRVAEP  423
            YTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+ FAAFRKAMHKAGLRWYGVRVAEP
Sbjct  383  YTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRWYGVRVAEP  442

Query  424  HHDGTVHWHLLCFMRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELINPRKGTPTS  483
            HHDGTVHWHLLCFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELINPRKGTPTS
Sbjct  443  HHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELINPRKGTPTS  502

Query  484  YIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGIPGRQAYREL  543
            YIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGIPGRQAYREL
Sbjct  503  YIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIPGRQAYREL  562

Query  544  RLLAGQAARQQGDKKAGARVLDNPRLDAILAAADAGCFATYIMKQGGVLVPRKYHLIRTA  603
            RLLAGQAAR QG++KAGA VLDNPRLDA+LAAADAGCFATYIMKQGGVLVPRK HL+RTA
Sbjct  563  RLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPRKHHLVRTA  622

Query  604  YEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQGACAPW--  661
            YE+N+EP+AYGDHGIRIYGIWSPIAEGKICTHAVKWK VRKAVDVQEAAADQGACAPW  
Sbjct  623  YELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAADQGACAPWTR  682

Query  662  --TRGNNCPLAENLNQQEKDKSADGDTRTDITRMDDKELHDYLHSMSKKDRRELAVRLRL  719
              TRGNNCP  ENLN+        G+   DI  M++KEL+DYLH+M++K+RREL+ RLRL
Sbjct  683  TRTRGNNCPPVENLNK-------SGGDLPDIKTMNEKELQDYLHNMGQKERRELTARLRL  735

Query  720  VKPKRCKDYKQRITDHQHQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGLRIFYRNQR  779
            VKPKR   YKQ I+++Q+ QL  EL +RGF+GS  E+DLLLRGGSIPSGAGLRIFYRN+R
Sbjct  736  VKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAGLRIFYRNHR  795

Query  780  LKEDDKWRN  788
            L+EDDKWR+
Sbjct  796  LQEDDKWRQ  804

26) SBO_0752 in NC_007613


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1097 bits (4159),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 670/796 (85%), Positives = 746/796 (94%), Gaps = 11/796 (1%)

Query  11   GFNEAAAAFSWNSPKKAINPYLDPAEVAPVSALSNLITLYAADNEQEQLRREALSDQVWE  70
            G NEAAAAF+WN+PKKA+NPYLDPAE AP SALSNLI+LYA DNEQEQLRRE+LSD+VWE
Sbjct  16   GSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVWE  75

Query  71   RYFFYESRDPVQHEMEQDKLISRAKLAHEQQRFNPDMVILADVNAQPSHISKPLMQRIEY  130
            RYFF ESRDPVQ+EMEQD+LI++AK A+EQQRFNPD+VI+A+V AQP+HISKPL++RI Y
Sbjct  76   RYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKY  135

Query  131  FSSLGRPKAYSRYLRETIKPCLERLEHVRDSQLSASFRFMASHVGLDGLLILPEMSQDQV  190
            F SLGR+KAYSRYL+ TI+PCLERLE+VRDSQ+SASFRFMASH GL+GLL+LPEM+QDQV
Sbjct  136  FHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  191  KRLSTLVAAHMSMCLDAACGDLYATDDVKPEEIRKTWEKVAAETLRLDVIPPAFEQLRRK  250
            KRLSTLVAAHMSMCLDAACGDL+ +DDVKPEEIR++WE+VAAE++RL+VIPPAFEQLRRK
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRK  255

Query  251  RNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYEAV  310
            + RRKPVPYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYEAV
Sbjct  256  KRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAV  315

Query  311  MHKREQRRKSLEFFRSHELVNEEGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAEM  370
            +HKREQRRKSLEFFRSHEL+NE+GDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIAEM
Sbjct  316  IHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEM  375

Query  371  RGDCAVFYTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKAGLRWY  430
            RGDCAVFYTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+ FAAFRKAMHKAGLRWY
Sbjct  376  RGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRWY  435

Query  431  GVRVAEPHHDGTVHWHLLCFMRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELINP  490
            GVRVAEPHHDGTVHWHLLCFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELINP
Sbjct  436  GVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELINP  495

Query  491  RKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNPWASLHRVQQFRFFGIPG  550
            RKGTPTSYIAKYISKNIDGRGLA EISKETG+SLRD+AE V++WASLHRVQQFRFFGIPG
Sbjct  496  RKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIPG  555

Query  551  RQAYRELRLLAGQAARQQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMRQGGVLVPRK  610
            RQAYRELRLLAGQAAR QG++KAGAPVLDNPRLDA+LAAADAGCFATYIM+QGGVLVPRK
Sbjct  556  RQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPRK  615

Query  611  YHLIRTAYEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQG  670
             HL+RTAYE+N+EP+AYGDHGIRIYGIWSPIAEGKICTHAVKWK VRKAVDVQEAAADQG
Sbjct  616  HHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAADQG  675

Query  671  ACAPW----TRGNNCLLAENLNQQEKDKSADGNPRTDITSMDDKELHDYLHSMSKKerre  726
            ACAPW    TRGNNC   ENLN+        G    DI +M++KEL+DYLH+M++KERRE
Sbjct  676  ACAPWTRTRTRGNNCPPVENLNK-------SGGDLPDIKTMNEKELQDYLHNMGQKERRE  728

Query  727  laarlrlVKPKRRKDYKQRITDHQRLQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGLR  786
            L+ARLRLVKPKR+  YKQ I+++QRLQL  EL +RGF+GS  E+DLLLRGGSIPSGAGLR
Sbjct  729  LTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAGLR  788

Query  787  IFYRNQRLQEDDQWRN  802
            IFYRN+RLQEDD+WR+
Sbjct  789  IFYRNHRLQEDDKWRQ  804

27) KO11_19480 in NC_017660


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1097 bits (4160),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 667/798 (84%), Positives = 747/798 (94%), Gaps = 11/798 (1%)

Query  9    SSGFNEAAAAFSWNGPKKAINPYLDPAEVAPVSALSNLITLYAADNeqeqlrreelseqV  68
            ++G NEAAAAF+WN PKKA+NPYLDPAE AP SALSNLI+LYA DNEQEQLRRE LS++V
Sbjct  14   TGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEV  73

Query  69   WERYFFNESRDPVQREMEQDKLISRAKLAHEQQRFNPDMVILADVSAQPTHISKPLMQRI  128
            WERYFFNESRDPVQREMEQD+LI++AK A+EQQRFNPD+VI+A+V+AQP+HISKPL++RI
Sbjct  74   WERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERI  133

Query  129  EYFSSLGRPKAYSRYLRETIKPCLERLDCVRDSQLSTSFRFMASHQGLEGLLILPEMSQD  188
             YF SLGR+KAYSRYL+ TI+PCLERL+ VRDSQ+S+SFRFMASH+GLEGLL+LPEM+QD
Sbjct  134  KYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQD  193

Query  189  QVKRLSTLVAAHMSMCLEAACGDLYTNDDVKPEEIRKTWEKVAAETLRLDVIPPAFEKLR  248
            QVKRLSTLVAAHMSMCL+AACGDL+ +DDVKPEEIR++WE+VAAE++RL+VIPPAFE+LR
Sbjct  194  QVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLR  253

Query  249  RKRNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYE  308
            RK+ RRKPVPYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYE
Sbjct  254  RKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYE  313

Query  309  AVMHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIA  368
            AV+HKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIA
Sbjct  314  AVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIA  373

Query  369  EMRGDCAVFYTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKTGLR  428
            EMRGDCAVFYTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+ FAAFRKAMHK+GLR
Sbjct  374  EMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLR  433

Query  429  WYGVRVAEPHHDGTVHWHLMCFMRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELI  488
            WYGVRVAEPHHDGTVHWHL+CFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELI
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  489  NPRKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGI  548
            NPRKGTPTSYIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGI
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGI  553

Query  549  PGRQAYRELRLLAGQAARQQGDKKAGAPVLDDPRLDAILAAADAGCFATYIMKQGGVLVP  608
            PGRQAYRELRLLAGQAAR QG++KAGAPVLD+PRLDA+LAAADAGCFATYIMKQGGVLVP
Sbjct  554  PGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVP  613

Query  609  RKYHLIRTAYEINEEPTAYGDHGIRIYGIWSPISEGKICTHAVKWKMVRKAVDVQEAVAD  668
            RK HL+RTAYE+N+EP+AYGDHGIRIYGIWSPI+EGKICTHAVKWK VRKAVDVQEA AD
Sbjct  614  RKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAAD  673

Query  669  QGACAPW----TRGNNCPLAENLNQQGKDKSADGDSRTDITRMNDKELHDYLHSMSKKER  724
            QGACAPW    TRGNNCP  ENLN+ G D +       DI  MN+KEL+DYLH+M++KER
Sbjct  674  QGACAPWTRTRTRGNNCPPVENLNKSGGDLP-------DIKTMNEKELQDYLHNMGQKER  726

Query  725  RELAARLRQVKPKRRKDYKQRITDHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAG  784
            REL+ARLR VKPKR+  YKQ I+++QR QL  EL +RGF+GS  E+DLLLRGGSIPSGAG
Sbjct  727  RELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAG  786

Query  785  LRIFYRNQRLKEDDKWRN  802
            LRIFYRN+RL+EDDKWR+
Sbjct  787  LRIFYRNHRLQEDDKWRQ  804

28) EKO11_3027 in NC_016902


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1097 bits (4160),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 667/798 (84%), Positives = 747/798 (94%), Gaps = 11/798 (1%)

Query  9    SSGFNEAAAAFSWNGPKKAINPYLDPAEVAPVSALSNLITLYAADNeqeqlrreelseqV  68
            ++G NEAAAAF+WN PKKA+NPYLDPAE AP SALSNLI+LYA DNEQEQLRRE LS++V
Sbjct  14   TGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEV  73

Query  69   WERYFFNESRDPVQREMEQDKLISRAKLAHEQQRFNPDMVILADVSAQPTHISKPLMQRI  128
            WERYFFNESRDPVQREMEQD+LI++AK A+EQQRFNPD+VI+A+V+AQP+HISKPL++RI
Sbjct  74   WERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERI  133

Query  129  EYFSSLGRPKAYSRYLRETIKPCLERLDCVRDSQLSTSFRFMASHQGLEGLLILPEMSQD  188
             YF SLGR+KAYSRYL+ TI+PCLERL+ VRDSQ+S+SFRFMASH+GLEGLL+LPEM+QD
Sbjct  134  KYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQD  193

Query  189  QVKRLSTLVAAHMSMCLEAACGDLYTNDDVKPEEIRKTWEKVAAETLRLDVIPPAFEKLR  248
            QVKRLSTLVAAHMSMCL+AACGDL+ +DDVKPEEIR++WE+VAAE++RL+VIPPAFE+LR
Sbjct  194  QVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLR  253

Query  249  RKRNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYE  308
            RK+ RRKPVPYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYE
Sbjct  254  RKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYE  313

Query  309  AVMHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIA  368
            AV+HKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIA
Sbjct  314  AVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIA  373

Query  369  EMRGDCAVFYTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKTGLR  428
            EMRGDCAVFYTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+ FAAFRKAMHK+GLR
Sbjct  374  EMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLR  433

Query  429  WYGVRVAEPHHDGTVHWHLMCFMRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELI  488
            WYGVRVAEPHHDGTVHWHL+CFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELI
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  489  NPRKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGI  548
            NPRKGTPTSYIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGI
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGI  553

Query  549  PGRQAYRELRLLAGQAARQQGDKKAGAPVLDDPRLDAILAAADAGCFATYIMKQGGVLVP  608
            PGRQAYRELRLLAGQAAR QG++KAGAPVLD+PRLDA+LAAADAGCFATYIMKQGGVLVP
Sbjct  554  PGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVP  613

Query  609  RKYHLIRTAYEINEEPTAYGDHGIRIYGIWSPISEGKICTHAVKWKMVRKAVDVQEAVAD  668
            RK HL+RTAYE+N+EP+AYGDHGIRIYGIWSPI+EGKICTHAVKWK VRKAVDVQEA AD
Sbjct  614  RKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAAD  673

Query  669  QGACAPW----TRGNNCPLAENLNQQGKDKSADGDSRTDITRMNDKELHDYLHSMSKKER  724
            QGACAPW    TRGNNCP  ENLN+ G D +       DI  MN+KEL+DYLH+M++KER
Sbjct  674  QGACAPWTRTRTRGNNCPPVENLNKSGGDLP-------DIKTMNEKELQDYLHNMGQKER  726

Query  725  RELAARLRQVKPKRRKDYKQRITDHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAG  784
            REL+ARLR VKPKR+  YKQ I+++QR QL  EL +RGF+GS  E+DLLLRGGSIPSGAG
Sbjct  727  RELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAG  786

Query  785  LRIFYRNQRLKEDDKWRN  802
            LRIFYRN+RL+EDDKWR+
Sbjct  787  LRIFYRNHRLQEDDKWRQ  804

29) ECW_m0916 in NC_017635


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1097 bits (4160),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 667/798 (84%), Positives = 747/798 (94%), Gaps = 11/798 (1%)

Query  9    SSGFNEAAAAFSWNGPKKAINPYLDPAEVAPVSALSNLITLYAADNeqeqlrreelseqV  68
            ++G NEAAAAF+WN PKKA+NPYLDPAE AP SALSNLI+LYA DNEQEQLRRE LS++V
Sbjct  14   TGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEV  73

Query  69   WERYFFNESRDPVQREMEQDKLISRAKLAHEQQRFNPDMVILADVSAQPTHISKPLMQRI  128
            WERYFFNESRDPVQREMEQD+LI++AK A+EQQRFNPD+VI+A+V+AQP+HISKPL++RI
Sbjct  74   WERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERI  133

Query  129  EYFSSLGRPKAYSRYLRETIKPCLERLDCVRDSQLSTSFRFMASHQGLEGLLILPEMSQD  188
             YF SLGR+KAYSRYL+ TI+PCLERL+ VRDSQ+S+SFRFMASH+GLEGLL+LPEM+QD
Sbjct  134  KYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQD  193

Query  189  QVKRLSTLVAAHMSMCLEAACGDLYTNDDVKPEEIRKTWEKVAAETLRLDVIPPAFEKLR  248
            QVKRLSTLVAAHMSMCL+AACGDL+ +DDVKPEEIR++WE+VAAE++RL+VIPPAFE+LR
Sbjct  194  QVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLR  253

Query  249  RKRNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYE  308
            RK+ RRKPVPYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYE
Sbjct  254  RKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYE  313

Query  309  AVMHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIA  368
            AV+HKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIA
Sbjct  314  AVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIA  373

Query  369  EMRGDCAVFYTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKTGLR  428
            EMRGDCAVFYTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+ FAAFRKAMHK+GLR
Sbjct  374  EMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLR  433

Query  429  WYGVRVAEPHHDGTVHWHLMCFMRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELI  488
            WYGVRVAEPHHDGTVHWHL+CFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELI
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  489  NPRKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGI  548
            NPRKGTPTSYIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGI
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGI  553

Query  549  PGRQAYRELRLLAGQAARQQGDKKAGAPVLDDPRLDAILAAADAGCFATYIMKQGGVLVP  608
            PGRQAYRELRLLAGQAAR QG++KAGAPVLD+PRLDA+LAAADAGCFATYIMKQGGVLVP
Sbjct  554  PGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVP  613

Query  609  RKYHLIRTAYEINEEPTAYGDHGIRIYGIWSPISEGKICTHAVKWKMVRKAVDVQEAVAD  668
            RK HL+RTAYE+N+EP+AYGDHGIRIYGIWSPI+EGKICTHAVKWK VRKAVDVQEA AD
Sbjct  614  RKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAAD  673

Query  669  QGACAPW----TRGNNCPLAENLNQQGKDKSADGDSRTDITRMNDKELHDYLHSMSKKER  724
            QGACAPW    TRGNNCP  ENLN+ G D +       DI  MN+KEL+DYLH+M++KER
Sbjct  674  QGACAPWTRTRTRGNNCPPVENLNKSGGDLP-------DIKTMNEKELQDYLHNMGQKER  726

Query  725  RELAARLRQVKPKRRKDYKQRITDHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAG  784
            REL+ARLR VKPKR+  YKQ I+++QR QL  EL +RGF+GS  E+DLLLRGGSIPSGAG
Sbjct  727  RELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAG  786

Query  785  LRIFYRNQRLKEDDKWRN  802
            LRIFYRN+RL+EDDKWR+
Sbjct  787  LRIFYRNHRLQEDDKWRQ  804

30) WFL_04460 in NC_017664


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1097 bits (4160),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 667/798 (84%), Positives = 747/798 (94%), Gaps = 11/798 (1%)

Query  9    SSGFNEAAAAFSWNGPKKAINPYLDPAEVAPVSALSNLITLYAADNeqeqlrreelseqV  68
            ++G NEAAAAF+WN PKKA+NPYLDPAE AP SALSNLI+LYA DNEQEQLRRE LS++V
Sbjct  14   TGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEV  73

Query  69   WERYFFNESRDPVQREMEQDKLISRAKLAHEQQRFNPDMVILADVSAQPTHISKPLMQRI  128
            WERYFFNESRDPVQREMEQD+LI++AK A+EQQRFNPD+VI+A+V+AQP+HISKPL++RI
Sbjct  74   WERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERI  133

Query  129  EYFSSLGRPKAYSRYLRETIKPCLERLDCVRDSQLSTSFRFMASHQGLEGLLILPEMSQD  188
             YF SLGR+KAYSRYL+ TI+PCLERL+ VRDSQ+S+SFRFMASH+GLEGLL+LPEM+QD
Sbjct  134  KYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQD  193

Query  189  QVKRLSTLVAAHMSMCLEAACGDLYTNDDVKPEEIRKTWEKVAAETLRLDVIPPAFEKLR  248
            QVKRLSTLVAAHMSMCL+AACGDL+ +DDVKPEEIR++WE+VAAE++RL+VIPPAFE+LR
Sbjct  194  QVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLR  253

Query  249  RKRNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYE  308
            RK+ RRKPVPYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYE
Sbjct  254  RKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYE  313

Query  309  AVMHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIA  368
            AV+HKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIA
Sbjct  314  AVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIA  373

Query  369  EMRGDCAVFYTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKTGLR  428
            EMRGDCAVFYTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+ FAAFRKAMHK+GLR
Sbjct  374  EMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLR  433

Query  429  WYGVRVAEPHHDGTVHWHLMCFMRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELI  488
            WYGVRVAEPHHDGTVHWHL+CFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELI
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  489  NPRKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGI  548
            NPRKGTPTSYIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGI
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGI  553

Query  549  PGRQAYRELRLLAGQAARQQGDKKAGAPVLDDPRLDAILAAADAGCFATYIMKQGGVLVP  608
            PGRQAYRELRLLAGQAAR QG++KAGAPVLD+PRLDA+LAAADAGCFATYIMKQGGVLVP
Sbjct  554  PGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVP  613

Query  609  RKYHLIRTAYEINEEPTAYGDHGIRIYGIWSPISEGKICTHAVKWKMVRKAVDVQEAVAD  668
            RK HL+RTAYE+N+EP+AYGDHGIRIYGIWSPI+EGKICTHAVKWK VRKAVDVQEA AD
Sbjct  614  RKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAAD  673

Query  669  QGACAPW----TRGNNCPLAENLNQQGKDKSADGDSRTDITRMNDKELHDYLHSMSKKER  724
            QGACAPW    TRGNNCP  ENLN+ G D +       DI  MN+KEL+DYLH+M++KER
Sbjct  674  QGACAPWTRTRTRGNNCPPVENLNKSGGDLP-------DIKTMNEKELQDYLHNMGQKER  726

Query  725  RELAARLRQVKPKRRKDYKQRITDHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAG  784
            REL+ARLR VKPKR+  YKQ I+++QR QL  EL +RGF+GS  E+DLLLRGGSIPSGAG
Sbjct  727  RELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAG  786

Query  785  LRIFYRNQRLKEDDKWRN  802
            LRIFYRN+RL+EDDKWR+
Sbjct  787  LRIFYRNHRLQEDDKWRQ  804

31) E2348C_0809 in NC_011601


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1096 bits (4156),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 665/799 (84%), Positives = 745/799 (94%), Gaps = 11/799 (1%)

Query  8    NSSGFNEAAAAFSWNGPKKAINPYLDPAEVAPESALSNMITLYAADNEQEQLRRDALSEQ  67
             ++G NEAAAAF+WN PKKA+NPYLDPAE APESALSN+I+LYA DNEQEQLRR++LS++
Sbjct  13   TTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDE  72

Query  68   VWERYFFNESRDPVQREMEQDNLISRAKLAHDQQRFNPDMVILADVSAQPTHISKPLMQR  127
            VWERYFFNESRDPVQREMEQD LI++AK A++QQRFNPD+VI+A+V+AQP+HISKPL++R
Sbjct  73   VWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLER  132

Query  128  IEYFSSLGRPKAYSRYLRETIKSCLERLEYVRDSQLSASFRFMASHQGLEGLLILPEMSQ  187
            I YF SLGR+KAYSRYL+ TI++CLERLE VRDSQ+SASFRFMASH+GLEGLL+LPEM+Q
Sbjct  133  IKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQ  192

Query  188  DQVKRLSTLVAAHMSMCLEAACGDLYASDDVKPEEIRKTWEKVAAETLRLDVIPPAFEKL  247
            DQVKRLSTLVAAHMSMCL+AACGDL+ SDDVKPEEIR++WE+VAAE++RL+VIPPAFE+L
Sbjct  193  DQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQL  252

Query  248  RRKRNRRKPVPYELIPGSLARMLCADWWYRKLWKIRCEWREEQLRAVCLVSKKASPYVSY  307
            RRK+ RRKPVPYELIP SLARMLCADWWYRKLW++RCEWREEQLRAVCLV+KKASPYVSY
Sbjct  253  RRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSY  312

Query  308  EAVTHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELI  367
            EAV HKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELI
Sbjct  313  EAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELI  372

Query  368  AEMRGDCAVFYTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKAGL  427
            AEMRGDCAVFYTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+ FAAFRKAMHKAGL
Sbjct  373  AEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGL  432

Query  428  RWYGVRVAEPHHDGTVHWHLMCFMRKKDRRAITALLRKFAIREDREELGNNTGPRFKSEL  487
            RWYGVRVAEPHHDGTVHWHL+CFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+EL
Sbjct  433  RWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPEL  492

Query  488  INPRKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFG  547
            INPRKGTPTSYIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFG
Sbjct  493  INPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFG  552

Query  548  IPGRQAYRELRLLAGQAARQQGDKKAGAPVLDDPRLDAILAAADAGCFATYIMKQGGVLV  607
            IPGRQAYRELRLLAGQAAR QG++KAGAPVLD+PRLDA+LAAADAGCFATYIMKQGGVLV
Sbjct  553  IPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLV  612

Query  608  PRKYHLIRTAYEINEEPTAYGDHGIRIYGIWSPIVQGKICTHAMKWKMVRKVVDVQEAAA  667
            PRK HL+RTAYE+N+EP+AYGDHGIRIYGIWSPI +GKICTHA+KWK VRK VDVQEAAA
Sbjct  613  PRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAA  672

Query  668  DQGACAPW----TRGNNCPLAENLNRQEKDKSADGDPRTDITRMDDKELHDYLHSMNKKe  723
            DQGACAPW    TRGNNCP  ENLN+        G+   DI  M++KEL+DYLH+M +KE
Sbjct  673  DQGACAPWTRTRTRGNNCPPVENLNK-------SGGDLPDIKTMNEKELQDYLHNMGQKE  725

Query  724  rrelaarlrlVKPKRRRDYKQRITDHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGA  783
            RREL+ARLRLVKPKR+  YKQ I+++QR QL  EL +RGF+GS  E+DLLLRGGSIPSGA
Sbjct  726  RRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGA  785

Query  784  GLRIFYRNQRLQEDDKWRN  802
            GLRIFYRN+RLQEDDKWR+
Sbjct  786  GLRIFYRNHRLQEDDKWRQ  804

32) P12B_c2745 in NC_017663


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1090 bits (4134),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 660/789 (84%), Positives = 739/789 (94%), Gaps = 11/789 (1%)

Query  4    SYSWNAEKKAINPYVGTEEQSSVSALSNLIALYAADNEQEHLRREVLSDQVWERYFFNES  63
            +++WN+ KKA+NPY++  E ++ SALSNLIALYA DNEQE+LRRE LSD+VWERYFFNES
Sbjct  23   AFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNES  82

Query  64   RDPVQREMEQDKLISRAKLAHEQQRFNPDMVILADVNAQPSHISKPLMQRIEYFSSLGRP  123
            RDPVQREMEQD+LI++AK A+EQQRFNPD+VI+A+V AQP+HISKPL++RI YF SLGR+
Sbjct  83   RDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYFHSLGRA  142

Query  124  KAYSRYLRETIKPCLERLEHVRDSQLSASFRFMASHEGLDGLLILPEMSQDQVKRLSTLV  183
            KAYSRYL+ TI+PCLERLE+VRDSQ+SASFRFMASH+GL+GLL+LPEM+QDQVKRLSTLV
Sbjct  143  KAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQVKRLSTLV  202

Query  184  AAHMSMCLDDACGDLYATDDVKPEEIRKTWERVAAETLRLDVIPPAFEQLRRKRNRRKPV  243
            AAHMSMCLD ACGDL+ +DDVKPEEIR++WERVAAE++RL+VIPPAFEQLRRK+ RRKPV
Sbjct  203  AAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRKKRRRKPV  262

Query  244  PYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYEAVMHKREQR  303
            PYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYEAV+HKREQR
Sbjct  263  PYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAVIHKREQR  322

Query  304  RKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAEMRGDCAVF  363
            RKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIAEMRGDCAVF
Sbjct  323  RKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEMRGDCAVF  382

Query  364  YTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKAGLRWYGVRVAEP  423
            YTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+ FAAFRKAMHKAGLRWYGVRVAEP
Sbjct  383  YTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRWYGVRVAEP  442

Query  424  HHDGTVHWHLLCFMRKKDRRAITALLRKFSIREDREELGNNTGPRFKSELINPRKGTPTS  483
            HHDGTVHWHLLCFMRKKDRR+ITALLRKF+IREDREELG NTGPRFK+ELINPRKGTPTS
Sbjct  443  HHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELINPRKGTPTS  502

Query  484  YIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGIPGRQAYREL  543
            YIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGIPGRQAYREL
Sbjct  503  YIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIPGRQAYREL  562

Query  544  RLLAGQAARQQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMKQGGVLVPRKYHLIRTA  603
            RLLAGQAAR QG++KAGAPVLDNPRLDA+LAAADAGCFATYIMKQGGVLVPRK HL+RTA
Sbjct  563  RLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPRKHHLVRTA  622

Query  604  YEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQGACAPW--  661
            YE+N+EP+AYGDHGIRIYGIWSPIAEGKICTHAVKWK VRKAVDVQEAAADQGACAPW  
Sbjct  623  YELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAADQGACAPWTR  682

Query  662  --TRGNNCPLAENLNQQEKDKSADGDPRTDITSMDDKELHDYLHSMSKKerrelaarlrl  719
              TRGNNCP  ENLN+        G+   DI +M++KEL+DYLH+M++KERREL+ARLRL
Sbjct  683  TRTRGNNCPPVENLNK-------SGGDLPDIKTMNEKELQDYLHNMGQKERRELTARLRL  735

Query  720  VKPKRRKDYKQRITDHQRLQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGLRIFYRNQR  779
            VKPKR+  YKQ I+++QRLQL  EL +RGF+GS  E+DLLLRGGSIPSGAGLRIFYRN+R
Sbjct  736  VKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAGLRIFYRNHR  795

Query  780  LQEDDQWRN  788
            LQEDD+WR+
Sbjct  796  LQEDDKWRQ  804

33) UMNK88_898 in NC_017641


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1086 bits (4117),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 661/789 (84%), Positives = 737/789 (94%), Gaps = 11/789 (1%)

Query  4    SYSWNAEKKAINPYVGTEEQSSVSALSNLIALYAADNEQEHLRREVLSDQVWERYFFNES  63
            +++WN+ KKA+NPY++  E ++ SALSNLIALYA DNEQE+LRRE LSD+VWERYFFNES
Sbjct  23   AFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNES  82

Query  64   RDPVQREMEQDKLISRAKLAHEQQRFNPDMVILADVNAQPSHISKPLMQRIEYFSSLGRP  123
            RDPVQREMEQD+LI++AK A+EQQRFNPD+VI+A+V AQP+HISKPL++RI YF SLGR+
Sbjct  83   RDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYFHSLGRA  142

Query  124  KAYSRYLRETIKPCLERLEHVRDSQLSASFRFMASHEGLDGLLILPEMSQDQVKRLSTLV  183
            KAYSRYL+ TI+PCLERLE+VRDSQ+SASFRFMASH+GL+GLL+LPEM+QDQVKRLSTLV
Sbjct  143  KAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQVKRLSTLV  202

Query  184  AAHMSMCLDAACGDLYATDDVKPEEIRKTWEKVAAETLRLDVIPPAFEQLRRKRNRRKPV  243
            AAHMSMCLDAACGDL+ +DDVKPEEIR++WE+VAAE++RL+VIPPAFEQLRRK+ RRKPV
Sbjct  203  AAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRKKRRRKPV  262

Query  244  PYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYEAVMHKREQR  303
            PYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYEAV+HKREQR
Sbjct  263  PYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAVIHKREQR  322

Query  304  RKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAEMRGDCAVF  363
            RKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIAEMRGDCAVF
Sbjct  323  RKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEMRGDCAVF  382

Query  364  YTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKAGLRWYGVRVAEP  423
            YTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+ FAAFRKAMHKAGLRWYGVRVAEP
Sbjct  383  YTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRWYGVRVAEP  442

Query  424  HHDGTVHWHLLCFMRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELINPRKGTPTS  483
            HHDGTVHWHLLCFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELINPRKGTPTS
Sbjct  443  HHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELINPRKGTPTS  502

Query  484  YIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGIPGRQAYREL  543
            YIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGIPGRQAYREL
Sbjct  503  YIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIPGRQAYREL  562

Query  544  RLLAGQAARQQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMKQGGVLVPRKYHLIRTA  603
            RLLAGQAAR QG++KAGAPVLDNPRLDA+LAAADAGCFATYIMKQGGVLVPRK HL+RTA
Sbjct  563  RLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPRKHHLVRTA  622

Query  604  YEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQGACAPW--  661
            YE+N+EP+AYGDHGIRIYGIWSPIAEGKICTHAVKWK VRKAVDVQEAAADQGACAPW  
Sbjct  623  YELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAADQGACAPWTR  682

Query  662  --TRGNNCPLAENLYQQGKDKSADGDTRTDITRMDDKELHDYLHSMNKKerrelaarlrl  719
              TRGNNCP  ENL + G D +       DI  M++KEL+DYLH+M +KERREL+ARLRL
Sbjct  683  TRTRGNNCPPVENLNKSGGDLP-------DIKTMNEKELQDYLHNMGQKERRELTARLRL  735

Query  720  VKPKRRRDYKQRITDHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGLRIFYRNQR  779
            VKPKR+  YKQ I+++QR QL  EL +RGF+GS  E+DLLLRGGSIPSGAGLRIFYRN+R
Sbjct  736  VKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAGLRIFYRNHR  795

Query  780  LQEDDKWRD  788
            LQEDDKWR+
Sbjct  796  LQEDDKWRQ  804

34) EcolC_2784 in NC_010468


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1085 bits (4114),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 657/789 (84%), Positives = 737/789 (94%), Gaps = 11/789 (1%)

Query  4    SYSWNAEKKAINPYVETEEQSSVSALSNLIALYAADNEQEQLRREALSDQVWERYFFNES  63
            +++WN+ KKA+NPY++  E ++ SALSNLIALYA DNEQEQLRRE+LSD+VWERYFFNES
Sbjct  23   AFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNES  82

Query  64   RDPVQREMEQDKLISRAKLAHEQQRFNPDMVILADVNAQPSHISKPLMQRIEYFSSLGRP  123
            RDPVQREMEQD+LI++AK A+EQQRFNPD+VI+A+V AQP+HISKPL++RI YF SLGR+
Sbjct  83   RDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYFHSLGRA  142

Query  124  KAYSRYLRETIKPCLERLEHVRDCQLSTSFRFMASHEGLDGLLILPEMSQDQVKRLSTLV  183
            KAYSRYL+ TI+PCLERLE+VRD Q+S+SFRFMASH+GL+GLL+LPEM+QDQVKRLSTLV
Sbjct  143  KAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQVKRLSTLV  202

Query  184  AAHMSMCLDAACGDLYVTDDVKPEEIRKTWEKVAAETLRLDVIPPAFEQLRRKRNRRKPV  243
            AAHMSMCLDAACGDL+V+DDVKPEEIR++WE+VAAE++RL+VIPPAFEQLRRK+ RRKPV
Sbjct  203  AAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRKKRRRKPV  262

Query  244  PYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYEAVMHKREQR  303
            PYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYEAV+HKREQR
Sbjct  263  PYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAVIHKREQR  322

Query  304  RKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAEMRGDCAVF  363
            RKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIAEMRGDCAVF
Sbjct  323  RKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEMRGDCAVF  382

Query  364  YTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKAGLRWYGVRVAEP  423
            YTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+ FAAFRKAMHKAGLRWYGVRVAEP
Sbjct  383  YTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRWYGVRVAEP  442

Query  424  HHDGTVHWHLLCFMRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELINPRKGTPTS  483
            HHDGTVHWHLLCFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELINPRKGTPTS
Sbjct  443  HHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELINPRKGTPTS  502

Query  484  YIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGIPGRQAYREL  543
            YIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGIPGRQAYREL
Sbjct  503  YIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIPGRQAYREL  562

Query  544  RLLAGQAARQQGDKKAGAPVLDNPHLDAILAAADAGCFATYIMKQGGVLVPRKYHLIRTA  603
            RLLAGQAAR QG++KAGAPVLDNP+LDA+LAAADAGCFATYIMKQGGVLVPRK HL+RTA
Sbjct  563  RLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPRKHHLVRTA  622

Query  604  YEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQGACTPW--  661
            YE+N+EP+AYGDHGIRIYGIWSPIAEGKICTHAVKWK VRKAVDVQEAAADQGAC+PW  
Sbjct  623  YELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAADQGACAPWTR  682

Query  662  --TRGNNCPLAENLYQQAKDKSADGDTRTDITRMDDKELHDYLHSMNKKerrelaarlrl  719
              TRGNNCP  ENL       +  G+   DI  M++KEL+DYLH+M +KERREL+ARLRL
Sbjct  683  TRTRGNNCPPVENL-------NKSGGDLPDIKTMNEKELQDYLHNMGQKERRELTARLRL  735

Query  720  VKPKRRKDYKQRITDHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGLRIFYRNQR  779
            VKPKR+  YKQ I+++QR QL  EL +RGF+GS  E+DLLLRGGSIPSGAGLRIFYRN+R
Sbjct  736  VKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAGLRIFYRNHR  795

Query  780  LREDDKWRN  788
            L+EDDKWR+
Sbjct  796  LQEDDKWRQ  804

35) ETA_05620 in NC_010694


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1080 bits (4096),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 649/807 (81%), Positives = 740/807 (92%), Gaps = 8/807 (0%)

Query  1    MSAGKPDLAHGDNIKPGGTDDAAWAFPWNAPKKAINPYLDRPEVKP-SALSDPIALFAAE  59
            M+ +K  L  ++    GG+++AA AFPWN+PKKA+NPYLD +E  P SALS+ IAL+A +
Sbjct  1    MAVSKITLHYAQT--TGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVD  58

Query  60   NEGAKQRRAALSDEAWNRYFYNESRDPVLKEMEQERLTGRARLIHEQHRFNPDLVIIDNV  119
            NE  + RR +LSDE W+RYF+NESRDPV +EMEQ+RL  +A+  +EQ+RFNPDLVII NV
Sbjct  59   NEQEQLRRETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANV  118

Query  120  RAEPAFISKPLMQRIAYFQQLDRPKACSRYLRDTITPCLQRLERVRDSQASASFRFMASR  179
             A+PA ISKPL++RI YF+ L+R+KA SRYL+ TI PCL+RLERVRDSQ SASFRFMAS+
Sbjct  119  GAQPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASH  178

Query  180  DGLDGLLVLAEMNQHQVKRLATLVGAHMSLCLEEAGSALFTADEVKPQEIRRVWERVAAE  239
            DGL+GLLVL+EMNQ+QVKRL+TLV+AHMS+CL+ A + LF +D+VKP+EIR+ WERVAAE
Sbjct  179  DGLEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAE  238

Query  240  AMRLDVIPPAFEALrrkkrrrkPVPYELIPGSLARMLCADWWYRKLWQTRCEWREEQLRA  299
            AMRL+VIPPAFE LRRKKRRRKPVPYELIP SLARMLCADWWYRKLWQ RCEWREEQLRA
Sbjct  239  AMRLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRA  298

Query  300  VCLVSKKASPYVSYEAVVHKREQRRKSLAFFRAHELVSENGDTLDMEEVVNASASNPAHR  359
            VCLV+KKASPYVSYEAV+HKREQRRKSL FFR+HEL++E+GDTLDME+VVNAS SNPAHR
Sbjct  299  VCLVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHR  358

Query  360  RNEMMACVKGLELIGEMRGDCAVFYTVTCPSRFHATLSNGRPNPTWSSATVRESSDYLVN  419
            RNEMMACVKGLELI+EMRGDCAVFYT+TCPSRFHATL+NGRPNP W+SATVR+SSDYLV+
Sbjct  359  RNEMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVD  418

Query  420  TFAAFRKAMHRRGLRWYGVRVAEPHHDGTVHWHLLCFMRKKERRSISALLRKFAIREDRA  479
            TFAAFRKAMH+ GLRWYGVRVAEPHHDGTVHWHLLCFMRKK+RRSI+ALLRKFAIREDR 
Sbjct  419  TFAAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDRE  478

Query  480  ELGNNTGPRFKSELINPRKGSPTGYIAKYISKNIDGRGLAGEISKETGKSLRDNAENVNA  539
            ELG NTGPRFK+ELINPRKG+PT+YIAKYISKNIDGRGLA EISKETG+SLRD+AE+V+A
Sbjct  479  ELGANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSA  538

Query  540  WASLHRVQQFRFFGIPGRQAYRELRLLAGQAGRAQGDKKAGAPvldnarldavlaaadvG  599
            WASLHRVQQFRFFGIPGRQAYRELRLLAGQA+R QG++KAGAPVLDN+RLDAVLAAAD G
Sbjct  539  WASLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAG  598

Query  600  CFATYIMKQGGVLVPRKNHLIRTAYALNDEPGTYGDRGIRIYGIWSPLVAGRICTHALKW  659
            CFATYIMKQGGVLVPRK+HL+RTAY LNDEP++YGD+GIRIYGIWSP+  G+ICTHA+KW
Sbjct  599  CFATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKW  658

Query  660  KKVRKAVDVQEATADQGGSAAPW----TRGNNCPLVENLNKSGGELPDIKTMDEKELQEY  715
            KKVRKAVDVQEA+ADQG+  APW    TRGNNCP VENLNKSGG+LPDIKTM+EKELQ+Y
Sbjct  659  KKVRKAVDVQEAAADQGAC-APWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDY  717

Query  716  LHNMGQKERRELTARLRLVKPKRKKAYKQTISDHQRLQLEAELSSRGFDGSESEIDLLLR  775
            LHNMGQKERRELTARLRLVKPKRK  YKQ IS++QRLQLEAEL++RGF+GS SEIDLLLR
Sbjct  718  LHNMGQKERRELTARLRLVKPKRKTVYKQNISEQQRLQLEAELTARGFEGSASEIDLLLR  777

Query  776  GGSIPSGAGLRIFYRNHCLQEDGKWRQ  802
            GGSIPSGAGLRIFYRNH LQED+KWRQ
Sbjct  778  GGSIPSGAGLRIFYRNHRLQEDDKWRQ  804

36) Ent638_1350 in NC_009436


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1069 bits (4051),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 673/781 (87%), Positives = 746/781 (96%), Gaps = 7/781 (0%)

Query  28   YPWTSPKKAVNPYLDPADVAPVSALSNLITLYAADNQQEQLRREALSDEVWERYFFNESR  87
            +PW +PKKAVNPYLDPA+ AP SALSNLI+LYA DN+QEQLRRE+LSDEVWERYFFNESR
Sbjct  24   FPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNESR  83

Query  88   DPVQREMEQDQLTSRAKMAREQQRFNSDLVILANVSAEPAHVSKPLLERIKFFQGLGRPK  147
            DPVQREMEQD+L ++AK AREQQRFN+DLVI+ANV+A+PAH+SKPLLERIK+F++LGR+K
Sbjct  84   DPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYFHSLGRAK  143

Query  148  AYSRYLRETIRPCLERLDRVRESQVSASFRFMASHEGLEGLLVLPEMNQEQVKRLSTLVA  207
            AYSRYL+ TIRPCLERL+RVR+SQVSASFRFMASH+GLEGLLVLPEMNQ+QVKRLSTLVA
Sbjct  144  AYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQVKRLSTLVA  203

Query  208  AHMSMCLDAACSDLFVTDDVKPEQIRQSWEKVAAEAMRLDVIPPAFEQLrrkkrrrkPVP  267
            AHMSMCLDAAC+DLFV+DDVKPE+IRQ+WE+VAAEAMRL+VIPPAFEQLRRKKRRRKPVP
Sbjct  204  AHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRKKRRRKPVP  263

Query  268  YDLIPGSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAVIHKREQRR  327
            Y+LIP SLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAVIHKREQRR
Sbjct  264  YELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAVIHKREQRR  323

Query  328  KSLEFFQSHELVNADGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEMRGDCAVFY  387
            KSLEFF+SHEL+N DGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEMRGDCAVFY
Sbjct  324  KSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEMRGDCAVFY  383

Query  388  TITCPSRFHATINNGRPNPKWTSETVRQSSDYLVNTFAAFRKAMHKAGLRWYGVRVAEPH  447
            TITCPSRFHAT+NNGRPNPKWTS TVRQSSDYLV+TFAAFRKAMHKAGLRWYGVRVAEPH
Sbjct  384  TITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRWYGVRVAEPH  443

Query  448  HDGTVHWHLLCFMRKKDRRMLTALMRKFAIREDRAELGNNTGPRFKSELINPRKGTPTSY  507
            HDGTVHWHLLCFMRKKDRR +TAL+RKFAIREDR ELG NTGPRFK+ELINPRKGTPTSY
Sbjct  444  HDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELINPRKGTPTSY  503

Query  508  IAKYISKNIDGRGLAKEISKETGKSLRDSAEHVSAWASLHRVQQFRFFGIPGRQAYRElr  567
            IAKYISKNIDGRGLAKEISKETG+SLRDSAEHVSAWASLHRVQQFRFFGIPGRQAYRELR
Sbjct  504  IAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIPGRQAYRELR  563

Query  568  llagqaaraqgDKKAGAPVLENaqldavlaaadaGCFATYIMKQGGILVPRKHHLIRTAY  627
            LLAGQAAR QG++KAGAPVL+N++LDAVLAAADAGCFATYIMKQGG+LVPRKHHL+RTAY
Sbjct  564  LLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPRKHHLVRTAY  623

Query  628  ELNDEPGTYGDHGIRIYGIWSPIVEGRICTHAMKWKMVRKAVDVQEATADQGARAPW---  684
            ELNDEP++YGDHGIRIYGIWSPI EG+ICTHA+KWK VRKAVDVQEA+ADQGA APW   
Sbjct  624  ELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAADQGACAPWTRT  683

Query  685  -TRGNNCPPVEILNQTGGELPGREELS--ALPDF-ENMSKKELRELTARLRLVKPKRRKG  740
             TRGNNCPPVE LN++GG+LP+   ++   L D+ +NM++KE RELTARLRLVKPKR+  
Sbjct  684  RTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHNMGQKERRELTARLRLVKPKRKTV  743

Query  741  YKQEISEHQRLQLDAELKSRGFDASETEVDlllrggslpsggglrlFYRNQRLQEDDKWR  800
            YKQ+ISE+QRLQL+AEL +RGF++S +E+DLLLRGGS+PSG+GLR+FYRN+RLQEDDKWR
Sbjct  744  YKQNISEQQRLQLEAELTARGFEGSASEIDLLLRGGSIPSGAGLRIFYRNHRLQEDDKWR  803

Query  801  Q  801
            Q
Sbjct  804  Q  804

37) KPN2242_07290 in NC_017540


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score = 1024 bits (3880),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 619/684 (91%), Positives = 657/684 (97%), Gaps = 4/684 (0%)

Query  6    KDKGGPTEATVVFPWNAPKKAINPYHDPADVAPGSALSNLITLYAADNEQEKLRREALSD  65
            +  GG+ EA+  FPWN+PKKA+NPY DPA+ AP SALSNLI+LYA DNEQE+LRRE+LSD
Sbjct  12   QTTGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSD  71

Query  66   EVWERYFFNESRDPVQREMEQDKLISRAKMAREQQRANPDLVIIADVNAEPSHISKPLLE  125
            EVWERYFFNESRDPVQREMEQD+LI++AK AREQQR NPDLVIIA+V A+P+HISKPLLE
Sbjct  72   EVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLE  131

Query  126  RIKYFHGLGREKAYSRYLRETIRPCLERLARVRDSQVSASFRFMASHDGLEGLLVLPEMN  185
            RIKYFH+LGR KAYSRYL+ TIRPCLERL RVRDSQVSASFRFMASHDGLEGLLVLPEMN
Sbjct  132  RIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMN  191

Query  186  QEQIKRLSTLVAAHMSMCLDAACGDLFVTDDVKPEEIRQAWERVAAEVMRLEVIPPAFEK  245
            Q+Q+KRLSTLVAAHMSMCLDAACGDLFV+DDVKPEEIRQAWERVAAE MRLEVIPPAFE+
Sbjct  192  QDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQ  251

Query  246  LrrkkrrrkPVPYELIPPSLLRMMCADWWYDKLWQMRCEWREEQLRAVCLVNKKASPYVS  305
            LRRKKRRRKPVPYELIPPSL RM+CADWWY KLWQMRCEWREEQLRAVCLVNKKASPYVS
Sbjct  252  LRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVS  311

Query  306  YEAVIHKREQRRKSLEFFQSHELVNADGDTLDMEDVVNASNSNPAHRRNEMMACVKGLEL  365
            YEAVIHKREQRRKSLEFF+SHEL+N DGDTLDMEDVVNASNSNPAHRRNEMMACVKGLEL
Sbjct  312  YEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLEL  371

Query  366  IAEMRSDCAVFYTITCPSRFHATLNNGRPNPKWTSETVRQSSDYLVETFAAFRKAMHKAG  425
            IAEMR+DCAVFYTITCPSRFHATLNNGRPNPKWTS TVRQSSDYLV+TFAAFRKAMHKAG
Sbjct  372  IAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAG  431

Query  426  LRWYGVRVAEPHHDGTVHWHLLCFMRKKERRTITALLRKFAIREDREELGNNTGPRFKSE  485
            LRWYGVRVAEPHHDGTVHWHLLCFMRKK+RR+ITALLRKFAIREDREELG NTGPRFK+E
Sbjct  432  LRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPE  491

Query  486  LINPRKGTPTSYIAKYISKNIDGRGLAKEVSKETGRSLRDSAEHVTAWASLHRVQQFRFF  545
            LINPRKGTPTSYIAKYISKNIDGRGLAKE+SKETGRSLRDSAEHV+AWASLHRVQQFRFF
Sbjct  492  LINPRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFF  551

Query  546  GIPGRQAYRELRLLAGQAGRVQGDKKAGAPVLENPRLDAVLAAADAGCFATYIMKQGGVL  605
            GIPGRQAYRELRLLAGQA+RVQG++KAGAPVL+NPRLDAVLAAADAGCFATYIMKQGGVL
Sbjct  552  GIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVL  611

Query  606  VPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIIEGRICTHAIKWKMVRKAVDVQEAA  665
            VPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI EG+ICTHA+KWK VRKAVDVQEAA
Sbjct  612  VPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAA  671

Query  666  ADQGACAPW----TRGNNCPPVEK  685
            ADQGACAPW    TRGNNCPPVE+
Sbjct  672  ADQGACAPWTRTRTRGNNCPPVEN  695

38) ECED1_3097 in NC_011745


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  996 bits (3774),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 595/677 (88%), Positives = 652/677 (97%), Gaps = 4/677 (0%)

Query  10   SGFNEVAAAFSWNSPKKAINPYLDPAEVAPVSALSNLITLYATDNEQEQLRREALSDQVW  69
            +G NE AAAF+WN+PKKA+NPYLDPAE AP SALSNLI+LYA DNEQEQLRRE+LSD+VW
Sbjct  15   GGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVW  74

Query  70   ERYFFNESRDPVQREMEQDKLISRAKLAHEQQRFNPGMVILADVNAQPSHISKPLMQRIE  129
            ERYFFNESRDPVQREMEQD+LI++AK A+EQQRFNP++VI+A+V AQP+HISKPL++RI 
Sbjct  75   ERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIK  134

Query  130  YFSSLGRPKAYSRYLRETIKPCLERLEHVRDSQLSTSFRFMASHEGLDGLLILPEMSQDQ  189
            YF SLGR+KAYSRYL+ TI+PCLERLE+VRDSQ+S+SFRFMASH+GL+GLL+LPEM+QDQ
Sbjct  135  YFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQ  194

Query  190  VKRLSTLVAAHMSMCLDAACGDLYATDDVKPEEIRKTWEKVAAETLRLDVIPPAFEQLRR  249
            VKRLSTLVAAHMSMCLDAACGDL+ +DDVKPEEIR++WE+VAAE++RL+VIPPAFEQLRR
Sbjct  195  VKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  250  KRNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYEA  309
            K+ RRKPVPYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYEA
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  310  VMHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAE  369
            V+HKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIAE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  370  MRGDCAVFYTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKAGLRW  429
            MRGDCAVFYTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+ FAAFRKAMHKAGLRW
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRW  434

Query  430  YGVRVAEPHHDGTVHWHLLCFMRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELIN  489
            YGVRVAEPHHDGTVHWHLLCFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELIN
Sbjct  435  YGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELIN  494

Query  490  PRKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGIP  549
            PRKGTPTSYIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGIP
Sbjct  495  PRKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIP  554

Query  550  GRQAYRELRLLAGQAARQQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMKQGGVLVPR  609
            GRQAYRELRLLAGQAAR QG++KAGAPVLDNPRLDA+LAAADAGCFATYIMKQGGVLVPR
Sbjct  555  GRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPR  614

Query  610  KYHLIRTAYEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQ  669
            K HL+RTAYE+N+EP+AYGDHGIRIYGIWSPIAEGKICTHAVKWK VRKAVDVQEAAADQ
Sbjct  615  KHHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAADQ  674

Query  670  GACAPW----TRGNNCP  682
            GACAPW    TRGNNCP
Sbjct  675  GACAPWTRTRTRGNNCP  691

39) I137_13100 in NC_021984


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  995 bits (3769),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 596/676 (89%), Positives = 652/676 (97%), Gaps = 4/676 (0%)

Query  11   GFNEAAAAFSWNSPKKAINPYLDPAEVAPVSTLSNLITLYAADNEQEQLRREALSDQVWE  70
            G NEAAAAF+WN+PKKA+NPYLDPAE AP S+LSNLI+LYA DNEQEQLRRE+LSD+VWE
Sbjct  16   GSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVWE  75

Query  71   RYFFNESRDPVQREMEQDKLISRAKLAHEQQRFNSDMVILADVNAQPSHISKPLMQRIEY  130
            RYFFNESRDPVQREMEQD+LI++AK A+EQQRFN+D+VI+A+V AQP+HISKPL++RI Y
Sbjct  76   RYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKY  135

Query  131  FSSLGRPKAYSRYLRETIKPCLERLEHVRDSQLSASFRFMASHEGLDGLLILPEMSQDQV  190
            F SLGR+KAYSRYL+ TI+PCLERLE+VRDSQ+SASFRFMASH+GL+GLL+LPEM+QDQV
Sbjct  136  FHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  191  KRLSTLVAAHMSMCLDAACGDLYATDDVKPEEIRKTWEKVAAETLRLDVIPPAFEQLRRK  250
            KRLSTLVAAHMSMCLDAACGDL+ +DDVKPEEIR++WE+VAAE++RL+VIPPAFEQLRRK
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRK  255

Query  251  RNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYEAV  310
            + RRKPVPYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYEAV
Sbjct  256  KRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAV  315

Query  311  MHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAEM  370
            +HKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIAEM
Sbjct  316  IHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEM  375

Query  371  RGDCAVFYTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKAGLRWY  430
            RGDCAVFYTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+ FAAFRKAMHKAGLRWY
Sbjct  376  RGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRWY  435

Query  431  GVRVAEPHHDGTVHWHLLCFMRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELINP  490
            GVRVAEPHHDGTVHWHLLCFMRKKDRR+ITALLRKFAIREDREELG NTGPRFK+ELINP
Sbjct  436  GVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELINP  495

Query  491  RKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGIPG  550
            RKGTPTSYIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGIPG
Sbjct  496  RKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIPG  555

Query  551  RQAYRELRLLAGQAARQQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMKQGGVLVPRK  610
            RQAYRELRLLAGQAAR QG++KAGAPVLDNPRLDA+LAAADAGCFATYIMKQGGVLVPRK
Sbjct  556  RQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPRK  615

Query  611  YHLIRTAYEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQG  670
             HL+RTAYE+N+EP+AYGDHGIRIYGIWSPIAEGKICTHAVKWK VRKAVDVQEAAADQG
Sbjct  616  HHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAADQG  675

Query  671  ACAPW----TRGNNCP  682
            ACAPW    TRGNNCP
Sbjct  676  ACAPWTRTRTRGNNCP  691

40) ECS88_2841 in NC_011742


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  991 bits (3755),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 592/676 (88%), Positives = 649/676 (97%), Gaps = 4/676 (0%)

Query  11   GFNEAAAAFSWNSPKKAINPYLDPAEVAPVSALSNLITLYAADNEQEQLRREALSDQAWE  70
            G NEAAAAF+WN+PKKA+NPYLDPAE AP SALSNLI+LYA DNEQEQLRRE+LSD+ WE
Sbjct  16   GSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVWE  75

Query  71   RYFFNESRDPVQREMEQDKLISRAKLAHEQQRFNPDMVILADVNAQPSHISKPLMQRIEY  130
            RYFFNESRDPVQREMEQD+LI++AK A+EQQRFNPD+VI+A+V AQP+HISKPL++RI Y
Sbjct  76   RYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKY  135

Query  131  FSSLGRPKAYSRYLRETIKPCLERLEHVRDCQLSTSFRFMASHEGLDGLLILPEMSQDQV  190
            F SLGR+KAYSRYL+ TI+PCLERLE+VRD Q+S+SFRFMASH+GL+GLL+LPEM+QDQV
Sbjct  136  FHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  191  KRLSTLVAAHMSMCLDAACGDLYATDDIKPEEIRKTWEKVAAETLRLDVIPPAFEQLRRK  250
            KRLSTLVAAHMSMCLDAACGDL+ +DD+KPEEIR++WE+VAAE++RL+VIPPAFEQLRRK
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRK  255

Query  251  RNRRKPVPYELIPGSLARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSYEAV  310
            + RRKPVPYELIP SLARMLCADWWYRKLW+MRCEWREEQLRAVCLV+KKASPYVSYEAV
Sbjct  256  KRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAV  315

Query  311  MHKREQRRKSLEFFRSHELVNEDGDTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAEM  370
            +HKREQRRKSLEFFRSHEL+NEDGDTLDMEDVVNAS+SNPAHRRNEMMACVKGLELIAEM
Sbjct  316  IHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEM  375

Query  371  RGDCAVFYTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKAGLRWY  430
            RGDCAVFYTITCPSRFH+TLNNGRPNP WT+ATVRQSSDYLV+ FAAFRKAMHKAGLRWY
Sbjct  376  RGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRWY  435

Query  431  GVRVAEPHHDGTVHWHLLCFMRKKDRRAITALLRKFAIREDREELGNNTEPRFKSELINP  490
            GVRVAEPHHDGTVHWHLLCFMRKKDRR+ITALLRKFAIREDREELG NT PRFK+ELINP
Sbjct  436  GVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELINP  495

Query  491  RKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGIPG  550
            RKGTPTSYIAKYISKNIDGRGLA EISKETG+SLRD+AE V+AWASLHRVQQFRFFGIPG
Sbjct  496  RKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIPG  555

Query  551  RQAYRELRLLAGQAARQQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMKQGGVLVPRK  610
            RQAYRELRLLAGQAAR QG++KAGAPVLDNPRLDA+LAAADAGCFATYIMKQGGVLVPRK
Sbjct  556  RQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPRK  615

Query  611  YHLIRTAYEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDIQEAAADQG  670
             HL+RTAYE+N+EP+AYGDHGIRIYGIWSPIAEGKICTHAVKWK VRKAVD+QEAAADQG
Sbjct  616  HHLVRTAYELNDEPSAYGDHGIRIYGIWSPIAEGKICTHAVKWKKVRKAVDVQEAAADQG  675

Query  671  ACAPW----TRGNNCP  682
            ACAPW    TRGNNCP
Sbjct  676  ACAPWTRTRTRGNNCP  691

41) Kvar_3185 in NC_013850


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  713 bits (2698),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 455/791 (58%), Positives = 590/791 (75%), Gaps = 21/791 (2%)

Query  19   PDSTSLAWSWNARKQPVNPYAVDVPARKPSALAVWIALYEQDKSDQREQAEAMSRAA-EE  77
            ++ ++ A +WN+ K++VNPY         SAL+  IALY  D+ +++ + E++S    E 
Sbjct  17   SNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVWER  76

Query  78   YLFSVAHCDPWHYDELNDALIEKAKRHAELHRVDPLTLIRDDVASLPGFLRKPLETRIKY  137
            Y+F+ ++ DP + +  +D LI+ AK   E +R +P  +I  +V++ P+ + KPL  RIKY
Sbjct  77   YFFNESR-DPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKY  135

Query  138  LEKSEDPRHLPTYLNEVITPSLVRIDKVRANQASLSFQAMAGRDSLDQLLRLAELNQREV  197
            ++    ++  + YL+  I P L R+++VR +Q S SF+ MA++D+L+ LL L+E+NQ +V
Sbjct  136  FHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  198  KRLSTLVAAHIDMIFIQLCGEMLTDELASPIVILELYRRVAAEVSRLDVIPPGYEALRSK  257
            KRLSTLVAAH+ M +   CG+++  +   P  I +   RVAAE  RL+VIPP++E LR K
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRK  255

Query  258  HNRRNPINYELIPGALARMRCADWWQRKLWQLRNEWREELLRAACLVHRHASPYVSHDIL  317
              RR+P+ YELIP +LARM CADWW RKLWQ+R EWREE LRA CLV++ ASPYVS + +
Sbjct  256  KRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAV  315

Query  318  LQKREQRRKAMDFFRNHDLINEDGDTLSMEDVVLASASNPAHRRNEMMACVKGLELIAEM  377
            ++KREQRRK+++FFR+H+LINEDGDTL MEDVV AS SNPAHRRNEMMACVKGLELIAEM
Sbjct  316  IHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEM  375

Query  378  RGDCAMFYTITCPSKYHATLMNGKPNPTWDHSTVRKSSDYLVDTFAAFRKAMHKKELRWY  437
            RGDCA+FYTITCPS++HATL NG+PNP W  +TVR+SSDYLVDTFAAFRKAMHK  LRWY
Sbjct  376  RGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRWY  435

Query  438  GVRVAEPHHDGTVHWHLLCFMRKKHRRAITELLRRFAIREDRAELGNNTGARFKSKLIDP  497
            GVRVAEPHHDGTVHWHLLCFMRKK+RR+IT LLR+FAIREDR ELG NTG+RFK+ LI+P
Sbjct  436  GVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELINP  495

Query  498  RKGTPASYIAKYVSKNIDGRGLGDTVSKETGKSLRDSAEYVTAWASLHRVQQFRFFGIPG  557
            RKGTP+SYIAKY+SKNIDGRGL+  +SKETG+SLRDSAE V+AWASLHRVQQFRFFGIPG
Sbjct  496  RKGTPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIPG  555

Query  558  RQAYRELRLFASQATRAMKTSKPGAPVLMDPKLDAVLAAADVGCFATYIMKQGGVLVPRK  617
            RQAYRELRL+A+QA+R     K+GAPVL +P+LDAVLAAAD GCFATYIMKQGGVLVPRK
Sbjct  556  RQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPRK  615

Query  618  NYLIHTAYEPTVEPGTYGDHGIRIYGIWSPITGKENKICTHVHTWKMVKKASANPGAESA  677
            + L++TAYE   EP++YGDHGIRIYGIWSPI+  E KICTH   WK V+KA      E+A
Sbjct  616  HHLVRTAYELNDEPSAYGDHGIRIYGIWSPIA--EGKICTHAVKWKKVRKAVD--VQEAA  671

Query  678  AQGDPVAPW----TRGNNCPPNQKVRKKEMVTDVAIPEIMTPGEGTGALDVSKLPSKERR  733
            A+ ++ APW    TRGNNCPP +++ K    ++  +P+I T  E      + ++  KERR
Sbjct  672  ADQGACAPWTRTRTRGNNCPPVENLNK----SGGDLPDIKTMNEKELQDYLHNMGQKERR  727

Query  734  AILRRITEEIYNKKKA-QGNVESRNYSPLEVLLSNFASSIGIELSESQVNHLLNGKRIRF  792
             +  R+     ++K   + N+  ++   LE  L    ++ G+E S S+++ LL G  I  
Sbjct  728  ELTARLRLVKPKRKTVYKQNISEQQRLQLEAEL----TARGFEGSASEIDLLLRGGSIPS  783

Query  793  GD--RIYYATH  801
            G   RI+Y  H
Sbjct  784  GAGLRIFYRNH  794

42) gpA in NC_008800


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  508 bits (1916),  Expect = 6e-145, Method: Compositional matrix adjust.
 Identities = 326/690 (48%), Positives = 466/690 (68%), Gaps = 47/690 (6%)

Query  17   PGNDKTFAGVYSWNKPNASINPLLDIERFPKASPLARVIDAYRQDLQAATDALLTEGERK  76
             G  +  A+ ++WN P+ ++NP LD   F+  S+L+ +I  Y   ++   + L     R+
Sbjct  14   TGGSNEAAAAFPWNTPKKAVNPYLDPAEFAPESALSNLIALY--AVDNEQEQL-----RR  66

Query  77   ARGKRQRWIEYF-EEAED--RKELFLARLVESKKAERS----YPALEIQANLTSQPKFIR  129
                 + W  YF +E+ D  ++E+   RL++  K+ R      P L I AN+ +QP  I 
Sbjct  67   ETLSDEVWERYFFNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHIS  126

Query  130  QPLQRRIDYLRREQCDERANAFLNGTIEKALSRLDAMRGKQQTAAMRHIASREGLDGLLH  189
            +PL  RI Y++        + +L+ TI   L RL+ +R+ Q +A+ R +AS++GL+GLL 
Sbjct  127  KPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLV  186

Query  190  LAELNKREVTTLATMTAAHMDMLLDSQMANL-PAENATPRQILRIYHAVANEAKKLSITP  248
            L+E+N+ +V  L+T+ AAHM M LD+  ++L  +++  P +I +  + VA EA +L + P
Sbjct  187  LPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIP  246

Query  249  PNWDALNDKLRRRGEIPYDLIPGALARLRCATWWKGRLWRLRCQWREEQLRAAMLVHKKN  308
            P  + L  K RRR  +PY+LIP +LAR+ CA WW  +LW++RC+WREEQLRA  LV+KK 
Sbjct  247  PAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKA  306

Query  309  SPYISQEALIYQREQWRRSTEFIRAHELVNDSGFVMDMEEVVNASASNPHLRYIEMMTTC  368
            SPY+S EA+I +REQ+R+S EF+R+HEL+N+ G  +DME+VVNAS SNP  R  EMM+  
Sbjct  307  SPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACV  366

Query  369  KGLENLAEMRGDKAMFYTITCPSKYHATLKDGVPNPKWSTKTIKESSDYLVNLFAGIRKK  428
            KGLE +AEMRGD A+FYTITCPS++HATL++G PNPKW++ T+++SSDYLV+ FA++RK 
Sbjct  367  KGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKA  426

Query  429  LNRLGLRWYGVRIAEPHHDGTVHWHLMCIMEKKDRAAITQVMRDFAIREDRQELGRDIKP  488
            +++ GLRWYGVR+AEPHHDGTVHWHL+C+M KKDR +IT ++R FAIREDR+ELG +  P
Sbjct  427  MHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGP  486

Query  489  RFDVKPVLKSKGTITSYLTKYLGKNVRGSNLKGKLDKATGKPIVSKETGQPLGEDTERAV  548
            RF    +   KGT TSY++KY++KN+ G  L            +SKETG++L + +E+  
Sbjct  487  RFKPELINPRKGTPTSYIAKYISKNIDGRGLAKE---------ISKETGRSLRDSAEHVS  537

Query  549  AWASLHGVQQFRFFGIPSRQVYRELRMLAGQlrrkaeakaikleaalpeeSKDETGLNRV  608
            AWASLH VQQFRFFGIP+RQ YRELR+LAGQ  R    +                     
Sbjct  538  AWASLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAP----------------  581

Query  609  WLWKKVLANKAMDDVLAAADAGCMATYILKQGGVLEPRQNHLIRTAYIESETPNDYGEHG  668
                 VL N  +D VLAAADAGC ATYI+KQGGVL PR++HL+RTAY  ++ P+ YG+HG
Sbjct  582  -----VLDNPRLDAVLAAADAGCFATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHG  636

Query  669  TKIFGIWSPSLGERSRVCIHSDNWKMIRKT  698
             +I+GIWSP ++E +++C H+ +WK +RK+
Sbjct  637  IRIYGIWSP-IAE-GKICTHAVKWKKVRKA  664

43) YPTB3137 in NC_006155


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  489 bits (1843),  Expect = 4e-139, Method: Compositional matrix adjust.
 Identities = 331/727 (46%), Positives = 488/727 (68%), Gaps = 64/727 (8%)

Query  17   PGSDETFAGVYSWNKSKSSINPRLDIDLPLQFSPLSLVIdayykdakaaLAGIDALLTDD  76
             G+ +  A+ ++WN +K ++NP LD   P +F+P             +AL+ + AL + D
Sbjct  14   TGGSNEAAAAFPWNTPKKAVNPYLD---PAEFAP------------ESALSNLIALYAVD  58

Query  77   ERKARAKRQ--------RFIECFEDAEES--RELFLARLTESKKAERHNRALETQ----A  122
            + + + +R+        R++  F+++ ++  RE+   RL +  K+ R+++ ++ +    A
Sbjct  59   NEQEQLRRETLSDEVWERYF--FNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIA  116

Query  123  NLNSQHKFIRQPLQRRIDYLRQERGDKQANVFLNQLVEKALLRLDAMRVKQQTVSLRHIA  182
            N+ +Q   I +PL  RI Y++     K  + +L++ +   L RL+ +R  Q + S+R +A
Sbjct  117  NVGAQPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMA  176

Query  183  NRERLDGLLNLAALNKKEVTTLATMAAAHMDMLLDSQMATL-PTENATPRQILRLYHALA  241
            +++ L+GLL L+ +N+ +V  L+T+ AAHM M LD+  + L  +++  P +I +  + +A
Sbjct  177  SHDGLEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVA  236

Query  242  NEAKKLSITPPNWDALNDKLRRRGEIPYDLIPGALARLRCATWWRGRLWRLRCQWREEQL  301
             EA +L + PP  + L  K RRR  +PY+LIP +LAR+ CA WW  +LW++RC+WREEQL
Sbjct  237  AEAMRLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQL  296

Query  302  RAVMLVHKHASPYISSEALIQQREQWRRSAEFIRAHDLVNDAGFVMNMEDVVNASASNPH  361
            RAV LV+K ASPY+S EA+I++REQ+R+S EF+R+H+L+N+ G  ++MEDVVNAS SNP 
Sbjct  297  RAVCLVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPA  356

Query  362  LRYIEMMTTCKGLENLAEMRGDKAMFYTITCPSKYHATLKSGKRNPKWSTKTVKESSDYL  421
             R  EMM+  KGLE +AEMRGD A+FYTITCPS++HATL++G+ NPKW++ TV++SSDYL
Sbjct  357  HRRNEMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYL  416

Query  422  VNLFAGIRKKLSRLGLRWYGVRIAEPHHDGTVHWHLMCIMQKQDRAAITQVMRDFAIRED  481
            V+ FA++RK + + GLRWYGVR+AEPHHDGTVHWHL+C+M+K+DR +IT ++R FAIRED
Sbjct  417  VDTFAAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIRED  476

Query  482  RQELGRDIKPRFDVKPVLKSKGTITSYLTKYLGKNVRGSNLKGKLDKATGKPIVSKETGQ  541
            R+ELG +  PRF    +   KGT TSY++KY++KN+ G  L            +SKETG+
Sbjct  477  REELGANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKE---------ISKETGR  527

Query  542  PLGEDTERAVAWASLHGVQQFRFFGIPSRQAYRElrllagqlqrqaKPEQGKWKQVLPNK  601
            +L + +E+  AWASLH VQQFRFFGIP+RQAYRELRLLAGQ  R     ++    VL N 
Sbjct  528  SLRDSAEHVSAWASLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAG-APVLDNP  586

Query  602  AMDDVLAAADAGCMATYILKQGGVLEPRSNHLIRTAYIESETPNDYGELGTKIYGVWAPS  661
             +D VLAAADAGC ATYI+KQGGVL PR +HL+RTAY  ++ P+ YG+ G +IYG+W+P 
Sbjct  587  RLDAVLAAADAGCFATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI  646

Query  662  LGDESRICTHADNWKMVRKTGSDDSQTKASEAAAGVDLGFDFAVGAGGIGPW----TRGN  717
               E++ICTHA +WK VRK+   +                  A + G+ +PW    TRGN
Sbjct  647  --AEGKICTHAVKWKKVRKAVDVQEA----------------AADQGACAPWTRTRTRGN  688

Query  718  KCPPPAD  724
            +CPP  +
Sbjct  689  NCPPVEN  695

44) YPTS_3266 in NC_010634


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  488 bits (1841),  Expect = 6e-139, Method: Compositional matrix adjust.
 Identities = 330/727 (46%), Positives = 487/727 (67%), Gaps = 64/727 (8%)

Query  17   PGSDETFAGVYSWNKSKPSINPRLDIDLPLQFSPLSLVIdayykdakaaLAGIDALLTDD  76
             G+ +  A+ ++WN +K ++NP LD   P +F+P             +AL+ + AL + D
Sbjct  14   TGGSNEAAAAFPWNTPKKAVNPYLD---PAEFAP------------ESALSNLIALYAVD  58

Query  77   ERKARAKRQ--------RFIECFEDAEES--RELFLARLTESKKAERHNRALETQ----A  122
            + + + +R+        R++  F+++ ++  RE+   RL +  K+ R+++ ++ +    A
Sbjct  59   NEQEQLRRETLSDEVWERYF--FNESRDPVQREMEQDRLINHAKTAREQQRFNPDLVIIA  116

Query  123  NLNSQHKFIRQPLQRRIDYLRQERGDKQANVFLNQVVEKALLRLDAMRAKQQTVSLRHIA  182
            N+ +Q   I +PL  RI Y++     K  + +L++ +   L RL+ +R  Q + S+R +A
Sbjct  117  NVGAQPAHISKPLLERIKYFHSLGRAKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMA  176

Query  183  NRERLDGLLNLAALNKKEVTTLATMAAAHMDMLLDSQMATL-PTENATPRQILRIYHALA  241
            +++ L+GLL L+ +N+ +V  L+T+ AAHM M LD+  + L  +++  P +I +  + +A
Sbjct  177  SHDGLEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVA  236

Query  242  NEAKKLSITPPNWDALNDKLRRRGEIPYDLIPGALARLRCATWWRGRLWRLRCQWREEQL  301
             EA +L + PP  + L  K RRR  +PY+LIP +LAR+ CA WW  +LW++RC+WREEQL
Sbjct  237  AEAMRLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQL  296

Query  302  RAVMLVHKHASPYISSEALIQQREQWRRSAEFIRAHDLVNDAGFVMNMEDVVNASASNPH  361
            RAV LV+K ASPY+S EA+I++REQ+R+S EF+R+H+L+N+ G  ++MEDVVNAS SNP 
Sbjct  297  RAVCLVNKKASPYVSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPA  356

Query  362  LRYIEMMTTCKGLENLAEMRGDKAMFYTITCPSKYHATLKSGKRNPKWSTKTVKESSDYL  421
             R  EMM+  KGLE +AEMRGD A+FYTITCPS++HATL++G+ NPKW++ TV++SSDYL
Sbjct  357  HRRNEMMACVKGLELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYL  416

Query  422  VNLFAGIRKKLSRLGLRWYGVRIAEPHHDGTVHWHLMCIMQKQDRAAITQVMRDFAIRED  481
            V+ FA++RK + + GLRWYGVR+AEPHHDGTVHWHL+C+M+K+DR +IT ++R FAIRED
Sbjct  417  VDTFAAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIRED  476

Query  482  RQELGRDIKPRFDVKPVLKSKGTITSYLTKYLGKNVRGSNLRGKLDKATGKPIVSKETGQ  541
            R+ELG +  PRF    +   KGT TSY++KY++KN+ G  L            +SKETG+
Sbjct  477  REELGANTGPRFKPELINPRKGTPTSYIAKYISKNIDGRGLAKE---------ISKETGR  527

Query  542  PLGEDTERAVAWASLHGVQQFRFFGIPSRQAYRElrllagqlqrqaKPEQGKWKQVLANK  601
            +L + +E+  AWASLH VQQFRFFGIP+RQAYRELRLLAGQ  R     ++    VL N 
Sbjct  528  SLRDSAEHVSAWASLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAG-APVLDNP  586

Query  602  AMDDVLAAADAGCMATYILKQGGVLEPRSNHLIRTAYIESETPNDYGELGTKIYGVWAPS  661
             +D VLAAADAGC ATYI+KQGGVL PR +HL+RTAY  ++ P+ YG+ G +IYG+W+P 
Sbjct  587  RLDAVLAAADAGCFATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI  646

Query  662  LGDESRICTHADNWKMVRKTGSDDSQTKASEAAAGVDLGFDFAVGAGGIGPW----TRGN  717
               E++ICTHA +WK VRK+   +                  A + G+ +PW    TRGN
Sbjct  647  --AEGKICTHAVKWKKVRKAVDVQEA----------------AADQGACAPWTRTRTRGN  688

Query  718  KCPHPAD  724
            +CP   +
Sbjct  689  NCPPVEN  695

45) UTI89_C0949 in NC_007946


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  483 bits (1822),  Expect = 2e-137, Method: Compositional matrix adjust.
 Identities = 336/803 (42%), Positives = 528/803 (66%), Gaps = 62/803 (7%)

Query  9    WQQPRHAVGR--EGTGIPAPESALSSWLDAYRVENE----RRQEMADAAFSATPLGNLIN  62
            W+ P+ AV    + + + APESALS+ +  Y V+NE    RR+ ++D       + +   
Sbjct  26   WNTPKKAVNPYLDPAEF-APESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNE-SR  83

Query  63   KSLDAQEKQDKTITLAGDARKQARGAVD-EAMASLRLLPSYLRDPLIRHLSFLRKKQEAD  121
             +++ +  QD+ I  A  AR Q R   D   +A++   P+ +  PL+ ++ ++   +  +
Sbjct  84   DPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLG  140

Query  122  RQKGKKSWQAERYARGTLRKIFERLDRTDSRWLTPGYRSIAGRERLDDLLYLPQLNKHQI  181
            R K+       RY + T+R  +ERL+R     +++++R +A+++ L++LL LP++N++Q+
Sbjct  141  RAKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  182  QTLATMTAAMFSSTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHYDALTT  241
            + L+T+ AA  S  ++  C+++  +D ++  +   +A + +A  A++L+ +PP ++ L  
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  242  DKDRRNEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDA  301
             K RR+    EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  302  LSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAE  361
            + + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  362  ARGDKAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLR  421
             RGD AVF T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLR
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLR  433

Query  422  WYGIRTVEPHHDGTVHWHMMVFAHPEEIDSIVAITRDIAIQEDRHELGDDITPRFKAEYV  481
            WYG+R  EPHHDGTVHWH++ F +  +  SI A+ R +AI+EDR+ELG +  PRFK+E +
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  482  DGSKGTPTSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMAESVERAIGWARLHRV  541
            +  KGTPTSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRV  545

Query  542  RQFQFFGIPSRQVWRELRRLASQMARNP----EGPQQLKddamdavlaaadaGCFATYIE  597
            +QF+FFGIP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCFATYI 
Sbjct  546  QQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIM  605

Query  598  KQGGVLVPRKDYLIRTAYDFAEELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRR  657
            KQGGVLVPRK+ L+RTAY++ +E + YG+++++IYGIWSP+    +++CTH+ +WK VR+
Sbjct  606  KQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRK  663

Query  658  KPEAEDSARENGFDLQGGPAAPW----TRGNNCPRVQETDNNGTEQPEERPAPWPQLPDG  713
              + +++A ++      G+ APW    TRGNNCP V++ +++G + P+ +        + 
Sbjct  664  AVDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NE  711

Query  714  VEVNEWMRSLKRHERRALMRSLRDKQAKNSSDEMQSWTQSRKQQRPLPDNHELLAKEWRE  773
             E+++ ++++ + ERR L   LR  ++K  +       Q+  +Q+ L  + EL A+    
Sbjct  712  KELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEG  767

Query  774  SAESLGLHIGEQQMQHLLRGGSL  796
            SA  ++L         LLRGGS+
Sbjct  768  SASEIDL---------LLRGGSI  781

46) ECH74115_2663 in NC_011353


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  482 bits (1819),  Expect = 4e-137, Method: Compositional matrix adjust.
 Identities = 335/803 (42%), Positives = 527/803 (66%), Gaps = 62/803 (7%)

Query  9    WQQPRHAVGR--EGTGIPAPESALSSWLDAYRVENE----RRQEMADAAFSATPLGNLIN  62
            W+ P+ AV    + + + APESALS+ +  Y V+NE    RR+ ++D       + +   
Sbjct  26   WNTPKKAVNPYLDPAEF-APESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNE-SR  83

Query  63   KSLDAQEKQDKTITLAGDARKQARGAVD-EAMASLRLLPSYLRDPLIRHLSFLRKKQEAD  121
             +++ +  QD+ I  A  AR Q R   D   +A++   P+ +  PL+ ++ ++   +  +
Sbjct  84   DPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLG  140

Query  122  RQKGKKSWQAERYARGNLRKIFERLERTDHRWLTQGYRSLAGRERLDDLLYLPQLNKHQI  181
            R K+       RY +  +R  +ERLER  +  ++ ++R +A+++ L++LL LP++N++Q+
Sbjct  141  RAKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  182  QTLATMTAAMFSSTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHYDALTT  241
            + L+T+ AA  S  ++  C+++  +D ++  +   +A + +A  A++L+ +PP ++ L  
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  242  DKDRRNEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDA  301
             K RR+    EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  302  LSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAE  361
            + + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  362  ARGDKAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLR  421
             RGD AVF T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLR
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLR  433

Query  422  WYGIRTVEPHHDGTVHWHMMVFAHPEEIDTIVSHTRDIAIQEDRHELGDDITPRFKAEYV  481
            WYG+R  EPHHDGTVHWH++ F +  +  +I +  R +AI+EDR+ELG +  PRFK+E +
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  482  DGSKGTPTSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMTESVERAIGWARLHRV  541
            +  KGTPTSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRV  545

Query  542  RQFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFTTYIE  597
            +QF+FFGIP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCF+TYI 
Sbjct  546  QQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIM  605

Query  598  KQGGVLVPRKDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRR  657
            KQGGVLVPRK+ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+
Sbjct  606  KQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRK  663

Query  658  KPGVEDSARENGFDLQGGPAAPW----TRGNNCPRVQETDNNGTEQPEERPAPWPQLPDG  713
              +V+++A ++      G+ APW    TRGNNCP V++ +++G + P+ +        + 
Sbjct  664  AVDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NE  711

Query  714  VDVNEWMRSLKRHERRALMRSLRDKQAKNSSDEMQSWTQSRKQQRPLPDNHELLAKEWRE  773
             ++++ ++++ + ERR L   LR  ++K  +       Q+  +Q+ L  + EL A+    
Sbjct  712  KELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEG  767

Query  774  SAESLGLHIGEQQMQHLLRGGSL  796
            SA  ++L         LLRGGS+
Sbjct  768  SASEIDL---------LLRGGSI  781

47) ECSP_2494 in NC_013008


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  482 bits (1819),  Expect = 4e-137, Method: Compositional matrix adjust.
 Identities = 335/803 (42%), Positives = 527/803 (66%), Gaps = 62/803 (7%)

Query  9    WQQPRHAVGR--EGTGIPAPESALSSWLDAYRVENE----RRQEMADAAFSATPLGNLIN  62
            W+ P+ AV    + + + APESALS+ +  Y V+NE    RR+ ++D       + +   
Sbjct  26   WNTPKKAVNPYLDPAEF-APESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNE-SR  83

Query  63   KSLDAQEKQDKTITLAGDARKQARGAVD-EAMASLRLLPSYLRDPLIRHLSFLRKKQEAD  121
             +++ +  QD+ I  A  AR Q R   D   +A++   P+ +  PL+ ++ ++   +  +
Sbjct  84   DPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLG  140

Query  122  RQKGKKSWQAERYARGNLRKIFERLERTDHRWLTQGYRSLAGRERLDDLLYLPQLNKHQI  181
            R K+       RY +  +R  +ERLER  +  ++ ++R +A+++ L++LL LP++N++Q+
Sbjct  141  RAKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  182  QTLATMTAAMFSSTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHYDALTT  241
            + L+T+ AA  S  ++  C+++  +D ++  +   +A + +A  A++L+ +PP ++ L  
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  242  DKDRRNEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDA  301
             K RR+    EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  302  LSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAE  361
            + + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  362  ARGDKAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLR  421
             RGD AVF T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLR
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLR  433

Query  422  WYGIRTVEPHHDGTVHWHMMVFAHPEEIDTIVSHTRDIAIQEDRHELGDDITPRFKAEYV  481
            WYG+R  EPHHDGTVHWH++ F +  +  +I +  R +AI+EDR+ELG +  PRFK+E +
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  482  DGSKGTPTSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMTESVERAIGWARLHRV  541
            +  KGTPTSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRV  545

Query  542  RQFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFTTYIE  597
            +QF+FFGIP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCF+TYI 
Sbjct  546  QQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIM  605

Query  598  KQGGVLVPRKDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRR  657
            KQGGVLVPRK+ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+
Sbjct  606  KQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRK  663

Query  658  KPGVEDSARENGFDLQGGPAAPW----TRGNNCPRVQETDNNGTEQPEERPAPWPQLPDG  713
              +V+++A ++      G+ APW    TRGNNCP V++ +++G + P+ +        + 
Sbjct  664  AVDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NE  711

Query  714  VDVNEWMRSLKRHERRALMRSLRDKQAKNSSDEMQSWTQSRKQQRPLPDNHELLAKEWRE  773
             ++++ ++++ + ERR L   LR  ++K  +       Q+  +Q+ L  + EL A+    
Sbjct  712  KELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEG  767

Query  774  SAESLGLHIGEQQMQHLLRGGSL  796
            SA  ++L         LLRGGS+
Sbjct  768  SASEIDL---------LLRGGSI  781

48) A in NC_013716


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  482 bits (1817),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 337/803 (42%), Positives = 528/803 (66%), Gaps = 62/803 (7%)

Query  9    WQQPRHAVGR--EGTGIPAPESALSSWLGAYRVENE----RRQEMADAAFSATPLGNLIN  62
            W+ P+ AV    + + + APESALS+ ++ Y V+NE    RR+ ++D       + +   
Sbjct  26   WNTPKKAVNPYLDPAEF-APESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNE-SR  83

Query  63   KSLDAQEKQDKTITLAGDARKQARGAVD-EAMASLRLLPSYLRDPLIRHLSFLRKKQEAD  121
             +++ +  QD+ I  A  AR Q R   D   +A++   P+ +  PL+ ++ ++   +  +
Sbjct  84   DPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLG  140

Query  122  RRKGKKSWQAERYARGTLRKIFERLDRTDHRWLTPGYRSLAGRERLDDLLYLPQLNKHQI  181
            R K+       RY + T+R  +ERL+R  +  +++++R +A+++ L++LL LP++N++Q+
Sbjct  141  RAKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  182  QTLATMTAAMFSSTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHYDALTT  241
            + L+T+ AA  S  ++  C+++  +D ++  +   +A + +A  A++L+ +PP ++ L  
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  242  DKDRRNEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDA  301
             K RR+    EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  302  LSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAE  361
            + + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  362  ARGDRAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLR  421
             RGD AVF T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLR
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLR  433

Query  422  WYGIRTVEPHHDGTVHWHMMVFAHPEEIDSIVAITRDIAIQEDRHELGNDITPRFKVEYV  481
            WYG+R  EPHHDGTVHWH++ F +  +  SI A+ R +AI+EDR+ELG +  PRFK E +
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  482  DGSKGTPTSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMAESVERAIGWARLHRV  541
            +  KGTPTSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRV  545

Query  542  RQFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFATYIE  597
            +QF+FFGIP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCFATYI 
Sbjct  546  QQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIM  605

Query  598  KQGGVLVPRKDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRR  657
            KQGGVLVPRK+ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+
Sbjct  606  KQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRK  663

Query  658  KPEQEGSAHENGFDLQGGPAAPW----TRGNNCPSVQETDNNGTEQPEERPTPWPQLPDG  713
              + + +A ++      G+ APW    TRGNNCP+V++ +++G + P+ +        + 
Sbjct  664  AVDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NE  711

Query  714  VEVNEWMRSLKRHERRALMRSLRDKQAKNSSDEMQSWTQSRKQPRPLPDNHELLAKEWRE  773
             E+++ ++++ + ERR L   LR  ++K  +       Q+  + + L  + EL A+    
Sbjct  712  KELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEG  767

Query  774  SAESLGLHIGEQQMQHLLRGGSL  796
            SA  ++L         LLRGGS+
Sbjct  768  SASEIDL---------LLRGGSI  781

49) Z2978 in NC_002655


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  480 bits (1810),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 333/803 (42%), Positives = 525/803 (66%), Gaps = 62/803 (7%)

Query  9    WQQPRHAVGR--EGTGIPAPESALSSWLDAYRVENE----RRQEMADAAFSATPLGNLIN  62
            W+ P+ AV    + + + APESALS+ +  Y V+NE    RR+ ++D       + +   
Sbjct  26   WNTPKKAVNPYLDPAEF-APESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNE-SR  83

Query  63   KSLDAQEKQDKTITLAGDARKQARGAVD-EAMASLRLLPSYLRDPLIRHLSFLRKKQEAD  121
             +++ +  QD+ I  A  AR Q R   D   +A++   P+ +  PL+ ++ ++   +  +
Sbjct  84   DPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLG  140

Query  122  RQKGKKSWQAERYARGNLRKIFERLERTDHRWLTQGYRSLAGRERLDDLLYLPQLNKHQI  181
            R K+       RY +  +R  +ERLER  +  ++ ++R +A+++ L++LL LP++N++Q+
Sbjct  141  RAKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  182  QTLATMTAAMFSSTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHYDALTT  241
            + L+T+ AA  S  ++  C+++  +D ++  +   +A + +A  A++L+ +PP ++ L  
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  242  DKDRRNEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDA  301
             K RR+    EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  302  LSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAE  361
            + + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  362  ARGDKAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLR  421
             RGD AVF T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLR
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLR  433

Query  422  WYGIRTVEPHHDGTVHWHMMVFAHPEEIDTIVSHTRDIAIQEDRHELGDDITPRFKAEYV  481
            WYG+R  EPHHDGTVHWH++ F +  +  +I +  R +AI+EDR+ELG +  PRFK+E +
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  482  DGSKGTPTXYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMTESVERAIGWARLHRV  541
            +  KGTPT YIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRV  545

Query  542  RQFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFTTYIE  597
            +QF+FFGIP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCF+TYI 
Sbjct  546  QQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIM  605

Query  598  KQGGVLVPRKDYLIRTXYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRR  657
            KQGGVLVPRK+ L+RT Y+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+
Sbjct  606  KQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRK  663

Query  658  KPGVEDSARENGFDLQGGPAAPW----TRGNNCPRVQETDNNGTEQPEERPAPWPQLPDG  713
              +V+++A ++      G+ APW    TRGNNCP V++ +++G + P+ +        + 
Sbjct  664  AVDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NE  711

Query  714  VDVNEWMRSLKRHERRALMRSLRDKQAKNSSDEMQSWTQSRKQQRPLPDNHELLAKEWRE  773
             ++++ ++++ + ERR L   LR  ++K  +       Q+  +Q+ L  + EL A+    
Sbjct  712  KELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEG  767

Query  774  SAESLGLHIGEQQMQHLLRGGSL  796
            SA  ++L         LLRGGS+
Sbjct  768  SASEIDL---------LLRGGSI  781

50) A in NC_013716


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  479 bits (1805),  Expect = 4e-136, Method: Compositional matrix adjust.
 Identities = 342/804 (43%), Positives = 529/804 (66%), Gaps = 58/804 (7%)

Query  9    WQQPRHAVGR-EGTGTPAPESALSSWLDAYRAENE----RRQEMADAAFSATPLGNLINK  63
            W+ P+ AV    + +  APESALS+ +  Y  +NE    RR+ ++D       + +    
Sbjct  26   WNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNE-SRD  84

Query  64   SLDAQEKQDKTITLAGDARKQARGAVD-EAMASLRLLPSYLRDPLIRHLSFLRKKQEADR  122
            +++ +  QD+ I  A  AR Q R   D   +A++   P+ +  PL+ ++ ++   +  +R
Sbjct  85   PVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLGR  141

Query  123  RKGKKSWQAERYARGTLRKIFERLDRTDHRWLTPGYRSLAGRERLDDLLYLPQLNKHQIQ  182
             K+       RY + T+R  +ERL+R  +  +++++R +A+++ L++LL LP++N++Q++
Sbjct  142  AKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQVK  196

Query  183  TLATMTAAMFSSTFEKLCDGLGARDGELTMEVTLKAYQMLARMALHLHTIPPHYDALTTD  242
             L+T+ AA  S  ++  C++L   D ++  E   +A + +A  A++L+ IPP ++ L   
Sbjct  197  RLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRK  255

Query  243  KDRRNEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDAL  302
            K RR+    EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A+
Sbjct  256  KRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAV  315

Query  303  SEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAEA  362
             + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE 
Sbjct  316  IHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEM  375

Query  363  RGDKAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLRW  422
            RGD AVF T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLRW
Sbjct  376  RGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLRW  434

Query  423  YGIRTVEPHHDGTVHWHMMVFAHPEEIDTIVSHTRDIAIQEDRHELGDDITPRFKAEYVD  482
            YG+R  EPHHDGTVHWH++ F +  +  +I +  R +AI+EDR+ELG +  PRFK+E ++
Sbjct  435  YGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELIN  494

Query  483  GSKGTPTSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMAESVERAIGWARLHRVR  542
              KGTPTSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV+
Sbjct  495  PRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRVQ  546

Query  543  QFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFATYIEK  598
            QF+FFGIP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCFATYI K
Sbjct  547  QFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMK  606

Query  599  QGGVLVPRKDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRRK  658
            QGGVLVPRK+ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+ 
Sbjct  607  QGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRKA  664

Query  659  PEAEDSARENGFDLQGDPAAPWtrtrtrtrGNNCPRVQETDNNGTEQPEERPAPWPQLPD  718
             + +++A ++G      + APW  TRTRTRGNNCP V++ +++G + P+ +        +
Sbjct  665  VDVQEAAADQG------ACAPW--TRTRTRGNNCPPVENLNKSGGDLPDIKTM------N  710

Query  719  GVEVNEWMRSLKRHERRALMRSLRDKQAKNSSDEMQSWTQSRKQQRPLPDNHELLAKEWR  778
              E+++ ++++ + ERR L   LR  ++K  +       Q+  +Q+ L  + EL A+   
Sbjct  711  EKELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFE  766

Query  779  ESAESLGLHIGEQQMQHLLRGGSL  802
             SA  ++L         LLRGGS+
Sbjct  767  GSASEIDL---------LLRGGSI  781

51) ECNA114_0914 in NC_017644


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  478 bits (1803),  Expect = 6e-136, Method: Compositional matrix adjust.
 Identities = 334/803 (42%), Positives = 525/803 (66%), Gaps = 62/803 (7%)

Query  9    WQQPRHAVGR--EGTGIPAPESALSSWLDAYRAENE----RRQEMADAAFSATPLGNLIN  62
            W+ P+ AV    + + + APESALS+ +  Y  +NE    RR+ ++D       + +   
Sbjct  26   WNTPKKAVNPYLDPAEF-APESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNE-SR  83

Query  63   KSLDAQEKQDKTITLAGDARKQARGAVD-EAMASLRLLPSYLRDPLIRHLSFLRKKQEAD  121
             +++ +  QD+ I  A  AR Q R   D   +A++   P+ +  PL+ ++ ++   +  +
Sbjct  84   DPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLG  140

Query  122  RRKGKKSWQAERYARGTLRKIFERLDSTDGRWLTPGYRSLAGRERLDDLLYLPQLNKHQI  181
            R K+       RY + T+R  +ERL+   +  +++++R +A+++ L++LL LP++N++Q+
Sbjct  141  RAKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  182  QTLATMTAAMFSSTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHYDALTT  241
            + L+T+ AA  S  ++  C+++  +D ++  +   +A + +A  A++L+ +PP ++ L  
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  242  DKDRRNEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDA  301
             K RR+    EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  302  LSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAE  361
            + + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  362  ARGDKAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLR  421
             RGD AVF T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLR
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLR  433

Query  422  WYGIRTVEPHHDGTVHWHMMVFAHPEEIDTIVSHTRDIAIQEDRHELGNDITPRFKVEYV  481
            WYG+R  EPHHDGTVHWH++ F +  +  +I +  R +AI+EDR+ELG +  PRFK E +
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  482  DGSKGTPTSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMAESVERAIGWARLHRV  541
            +  KGTPTSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRV  545

Query  542  RQFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFATYIE  597
            +QF+FFGIP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCFATYI 
Sbjct  546  QQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIM  605

Query  598  KQGGVLVPRKDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRR  657
            KQGGVLVPRK+ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+
Sbjct  606  KQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRK  663

Query  658  KPEAEDSARENGFDLQGGPAAPW----TRGNNCPRVQETDNNGTEQPEERPAPWPQLPDG  713
              + +++A ++      G+ APW    TRGNNCP V++ +++G + P+ +        + 
Sbjct  664  AVDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NE  711

Query  714  VEVNEWMRSLKRHERRALMRSLRDKQAKNSSDEMQSWTQSRKQQRPLPDNHELLAKEWRE  773
             E+++ ++++ + ERR L   LR  ++K  +       Q+  +Q+ L  + EL A+    
Sbjct  712  KELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEG  767

Query  774  SAESLGLHIGEQQMQHLLRGGSL  796
            SA  ++L         LLRGGS+
Sbjct  768  SASEIDL---------LLRGGSI  781

52) SSON53_08320 in NC_016822


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  478 bits (1803),  Expect = 6e-136, Method: Compositional matrix adjust.
 Identities = 333/803 (42%), Positives = 526/803 (66%), Gaps = 62/803 (7%)

Query  9    WQQPRHAVGR--EGTGIPAPESALSSWLDAHRAENE----RRQEMADAAFSATPLGNLIN  62
            W+ P+ AV    + + + APESALS+ +     +NE    RR+ ++D       + +   
Sbjct  26   WNTPKKAVNPYLDPAEF-APESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNE-SR  83

Query  63   KSLDAQEKQDKTITLAGDARKQARGAVD-EAMASLRLLPSYLRDPLIRHLSFLRKKQEAD  121
             +++ +  QD+ I  A  AR Q R   D   +A++   P+ +  PL+ ++ ++   +  +
Sbjct  84   DPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLG  140

Query  122  RRKGKKSWQAERYARGTLRKIFERLDRTDGHWLTPGYRSLAGRERLDDLLYLPQLNKHQI  181
            R K+       RY + T+R  +ERL+R  +  +++++R +A+++ L++LL LP++N++Q+
Sbjct  141  RAKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  182  QTLATMTAAMFSSTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHYDALTT  241
            + L+T+ AA  S  ++  C+++  +D ++  +   +A + +A  A++L+ +PP ++ L  
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  242  DKDRRHEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDA  301
             K RR     EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  302  LSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAE  361
            + + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  362  ARGDKAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFATVRKKLNRDGLR  421
             RGD AVF T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FA+ RK +++ GLR
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLR  433

Query  422  WYGIRTAEPHHDGTVHWHMMVFAHPEEIDTIVSHTRDIAIQEDRHELGDDITPRFKAEYV  481
            WYG+R AEPHHDGTVHWH++ F +  +  +I +  R +AI+EDR+ELG +  PRFK+E +
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  482  DGSKGTPTSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMAESVERAIGWARLHRV  541
            +  KGTPTSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRV  545

Query  542  RQFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFATYIE  597
            +QF+FFGIP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCFATYI 
Sbjct  546  QQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIM  605

Query  598  KQGGVLVPRKDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRR  657
            KQGGVLVPRK+ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+
Sbjct  606  KQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRK  663

Query  658  KPEAEDSARENGFDLQGGPAAPW----TRGNNCPRVQETDNNGTEQPEERPAPWPQLPDG  713
              + +++A ++      G+ APW    TRGNNCP V++ +++G + P+ +        + 
Sbjct  664  AVDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NE  711

Query  714  VDVDEWMRSLKRHERRALMRSLRDKQAKNSSDEMQSWTQSRKQQRPLPDNHELLAKEWRE  773
             ++++ ++++ + ERR L   LR  ++K  +       Q+  +Q+ L  + EL A+    
Sbjct  712  KELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEG  767

Query  774  SAESLGLHIGEQQMQHLLRGGSL  796
            SA  ++L         LLRGGS+
Sbjct  768  SASEIDL---------LLRGGSI  781

53) ECSE_1846 in NC_011415


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  477 bits (1797),  Expect = 2e-135, Method: Compositional matrix adjust.
 Identities = 336/808 (42%), Positives = 528/808 (66%), Gaps = 72/808 (8%)

Query  9    WQQPRHAVGR--EGTGIPAPESALSSWLDAYRVENE----RRQEMADAA-----FSATPL  57
            W+ P+ AV    + + + APESALS+ +  Y V+NE    RR+ ++D       F+ +  
Sbjct  26   WNTPKKAVNPYLDPAEF-APESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNESR-  83

Query  58   GNLINKSLDAQEKQDKTITLAGDARKQARGAVD-EAMASLRLLPSYLRDPLIRHLSFLRK  116
             + +++ ++    QD+ I  A  AR Q R   D   +A++   P+ +  PL+ ++ ++  
Sbjct  84   -DPVQREME----QDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF--  136

Query  117  KQEADRQKGKKSWQAERYARGNLRKIFERLERTDHRWLTQGYRSLAGRERLDDLLYLPQL  176
             +  +R K+       RY +  +R  +ERLER  +  ++ ++R +A+++ L++LL LP++
Sbjct  137  -HSLGRAKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEM  190

Query  177  NKHQIQTLATMTAAMFSSTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHY  236
            N++Q++ L+T+ AA  S  ++  C+++  +D ++  +   +A + +A  A++L+ +PP +
Sbjct  191  NQDQVKRLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAF  249

Query  237  DALTTDKDRRNEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPY  296
            + L   K RR+    EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY
Sbjct  250  EQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPY  309

Query  297  LSQDALSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGL  356
            +S +A+ + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGL
Sbjct  310  VSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGL  369

Query  357  ELLAEARGDKAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLN  416
            EL+AE RGD AVF T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK ++
Sbjct  370  ELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMH  428

Query  417  RDGLRWYGIRTVEPHHDGTVHWHMMVFAHPEEIDSIVAITRDIAIQEDRHELGDDITPRF  476
            + GLRWYG+R  EPHHDGTVHWH++ F +  +  SI A+ R +AI+EDR+ELG +  PRF
Sbjct  429  KAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRF  488

Query  477  KAEYVDGSKGTPTSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMAESVERAIGWA  536
            K+E ++  KGTPTSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA
Sbjct  489  KPELINPRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWA  540

Query  537  RLHRVRQFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCF  592
             LHRV+QF+FFGIP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCF
Sbjct  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600

Query  593  ASYIEKQGGVLVPRKDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNW  652
            A+YI KQGGVLVPRK+ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +W
Sbjct  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKW  658

Query  653  KLVRRKPEAEDSARENGFDIQGGPTAPW----TRGNNCPRVQETGNSGTEQSEEQPTPWS  708
            K VR+  + +++A ++      G+ APW    TRGNNCP V++  +SG + ++ +     
Sbjct  659  KKVRKAVDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM---  709

Query  709  QIPDGVDVDEWMRSLKRHERRALMRSLCDKRAKNSSDEMRSWTQSRKQQRPLPDNHELLA  768
               +  ++++ ++++ + ERR L   L   ++K  +       Q+  +Q+ L  + EL A
Sbjct  710  ---NEKELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTA  762

Query  769  KEWRESAESLGLHIGEQQMQHLLRGGSL  796
            +    SA  ++L         LLRGGS+
Sbjct  763  RGFEGSASEIDL---------LLRGGSI  781

54) E2348C_1806 in NC_011601


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  475 bits (1789),  Expect = 8e-135, Method: Compositional matrix adjust.
 Identities = 321/742 (44%), Positives = 496/742 (67%), Gaps = 54/742 (7%)

Query  18   SLDAQEKQDKTITLAGDARKQARGAVD-EAMASLRLLPSYLRDPLIRHLSFLRKKQEADR  76
            +++ +  QD+ I  A  AR Q R   D   +A++   P+ +  PL+ ++ ++   +  +R
Sbjct  85   PVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLGR  141

Query  77   QKGKNARQAERYARGTLRKIFERLERTDHRWLTPGYRSLAGRERLDDLLYLPQLNKHQIK  136
             K+       RY + T+R  +ERLER  +  +++++R +A+++ L++LL LP++N++Q+K
Sbjct  142  AKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQVK  196

Query  137  TLATMTAAMFSSTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHYDALTTD  196
             L+T+ AA  S  ++  C+++  +D ++  +   +A + +A  A++L+ +PP ++ L   
Sbjct  197  RLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRK  255

Query  197  KDRRNEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDAL  256
            K RR+    EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A+
Sbjct  256  KRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAV  315

Query  257  SEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAEA  316
             + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE 
Sbjct  316  IHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEM  375

Query  317  RGDRAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLRW  376
            RGD AVF T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLRW
Sbjct  376  RGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLRW  434

Query  377  YGIRTVEPHHDGTVHWHMMVFAHPEEIDSIVTITRDIAIQEDRHELGNDITPRFKVEYVD  436
            YG+R  EPHHDGTVHWH++ F +  +  SI ++ R +AI+EDR+ELG +  PRFK E ++
Sbjct  435  YGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELIN  494

Query  437  GTKGTPTSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMAESVERAIGWARLHRVR  496
              KGTPTSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV+
Sbjct  495  PRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRVQ  546

Query  497  QFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFATYIEK  552
            QF+FFGIP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCFATYI K
Sbjct  547  QFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMK  606

Query  553  QGGVLVPRKDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRRK  612
            QGGVLVPRK+ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+ 
Sbjct  607  QGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRKA  664

Query  613  PEQEGSAHENGFDLQGGPAAPW----TRGNNCPRVQETDNNGTEQPEERPAPWPQLPDGV  668
             + + +A ++      G+ APW    TRGNNCP V++ +++G + P+ +        +  
Sbjct  665  VDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NEK  712

Query  669  EVNEWVRSLKRHERRALMRSLRDKQAKNSSDEMQSWTQSRKQQRPLPDNHELLAKEWRES  728
            E+++ ++++ + ERR L   LR  ++K  +       Q+  +Q+ L  + EL A+    S
Sbjct  713  ELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEGS  768

Query  729  AESLGLHIGEQQMQHLLRGGSL  750
            A  ++L         LLRGGS+
Sbjct  769  ASEIDL---------LLRGGSI  781

55) ECs2633 in NC_002695


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  474 bits (1786),  Expect = 1e-134, Method: Compositional matrix adjust.
 Identities = 317/742 (43%), Positives = 496/742 (67%), Gaps = 54/742 (7%)

Query  18   SLDAQEKQDKTITLAGDARKQARGAVD-EAMASLRLLPSYLRDPLIRHLSFLRKKQEADR  76
            +++ +  QD+ I  A  AR Q R   D   +A++   P+ +  PL+ ++ ++   +  +R
Sbjct  85   PVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLGR  141

Query  77   QKGKKSWQAERYARGNLRKIFERLERTDHRWLTQGYRSLAGRERLDDLLYLPQLNKHQIQ  136
             K+       RY +  +R  +ERLER  +  ++ ++R +A+++ L++LL LP++N++Q++
Sbjct  142  AKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQVK  196

Query  137  TLATMTAAMFSSTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHYDALTTD  196
             L+T+ AA  S  ++  C+++  +D ++  +   +A + +A  A++L+ +PP ++ L   
Sbjct  197  RLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRK  255

Query  197  KDRRNEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDAL  256
            K RR+    EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A+
Sbjct  256  KRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAV  315

Query  257  SEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAEA  316
             + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE 
Sbjct  316  IHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEM  375

Query  317  RGDKAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLRW  376
            RGD AVF T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLRW
Sbjct  376  RGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLRW  434

Query  377  YGIRTVEPHHDGTVHWHMMVFAHPEEIDTIVSHTRDIAIQEDRHELGDDITPRFKAEYVD  436
            YG+R  EPHHDGTVHWH++ F +  +  +I +  R +AI+EDR+ELG +  PRFK+E ++
Sbjct  435  YGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELIN  494

Query  437  GSKGTPTSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMTESVERAIGWARLHRVR  496
              KGTPTSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV+
Sbjct  495  PRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRVQ  546

Query  497  QFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFTTYIEK  552
            QF+FFGIP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCF+TYI K
Sbjct  547  QFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMK  606

Query  553  QGGVLVPRKDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRRK  612
            QGGVLVPRK+ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+ 
Sbjct  607  QGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRKA  664

Query  613  PGVEDSARENGFDLQGGPAAPW----TRGNNCPRVQETDNNGTEQPEERPAPWPQLPDGV  668
             +V+++A ++      G+ APW    TRGNNCP V++ +++G + P+ +        +  
Sbjct  665  VDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NEK  712

Query  669  DVNEWMRSLKRHERRALMRSLRDKQAKNSSDEMQSWTQSRKQQRPLPDNHELLAKEWRES  728
            ++++ ++++ + ERR L   LR  ++K  +       Q+  +Q+ L  + EL A+    S
Sbjct  713  ELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEGS  768

Query  729  AESLGLHIGEQQMQHLLRGGSL  750
            A  ++L         LLRGGS+
Sbjct  769  ASEIDL---------LLRGGSI  781

56) O3M_11565 in NC_018650


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  473 bits (1784),  Expect = 2e-134, Method: Compositional matrix adjust.
 Identities = 315/743 (43%), Positives = 496/743 (67%), Gaps = 57/743 (7%)

Query  72   EAGQREKLAQSIISKRRATEQ----DPVARAFATLKALPVYLREPLSRHLSFLRKKQEAD  127
            ++ QRE   + +I+  +++ +    +P    +A + A P  +  PL  ++ ++   +  +
Sbjct  84   DPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLG  140

Query  128  RQKGKKSWQAERYARGTLRKIFERLDRTDGRWLTPGYRSLAGRERLDDLLYLPQLNKHQI  187
            R K+       RY + T+R  +ERL+R  +  +++++R +A+++ L++LL LP++N++Q+
Sbjct  141  RAKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  188  QTLATMTAAMFSSTFEKLCDGFGATDGELTMDVTLKTYQMLARMALHLHAMPPHYDALTT  247
            + L+T+ AA  S  ++  C+++  +D ++  +   ++ + +A  A++L+ +PP ++ L  
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  248  DKDRRNEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDA  307
             K RR+    EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  308  LSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAE  367
            + + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  368  ARGDRAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLR  427
             RGD AVF T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLR
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLR  433

Query  428  WYGIRTVEPHHDGTVHWHMMVFAHPEEIDSIVAITRDIAIQEDRHELGNDITPRFKVEYV  487
            WYG+R  EPHHDGTVHWH++ F +  +  SI A+ R +AI+EDR+ELG +  PRFK E +
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  488  DGSKGTPTSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMAESVERAIGWARLHRV  547
            +  KGTPTSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRV  545

Query  548  RQFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFATYIE  603
            +QF+FFGIP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCFATYI 
Sbjct  546  QQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIM  605

Query  604  KQGGVLVPRKDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRR  663
            KQGGVLVPRK+ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+
Sbjct  606  KQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRK  663

Query  664  KPEAEDSARENGFDLQGGPAAPW----TRGNNCPRVQETDNNGTEQPEERPAPWPQLPDG  719
              + +++A ++      G+ APW    TRGNNCP V++ +++G + P+ +        + 
Sbjct  664  AVDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NE  711

Query  720  VDVDEWMRSLKRHERRALMRSLRDKQAKNSSDEMQSWTQSRKQQRPLPDNHELLAKEWRE  779
             ++++ ++++ + ERR L   LR  ++K  +       Q+  +Q+ L  + EL A+    
Sbjct  712  KELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEG  767

Query  780  SAESLGLHIGEQQMQHLLRGGSL  802
            SA  ++L         LLRGGS+
Sbjct  768  SASEIDL---------LLRGGSI  781

57) O3O_14035 in NC_018661


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  473 bits (1784),  Expect = 2e-134, Method: Compositional matrix adjust.
 Identities = 315/743 (43%), Positives = 496/743 (67%), Gaps = 57/743 (7%)

Query  72   EAGQREKLAQSIISKRRATEQ----DPVARAFATLKALPVYLREPLSRHLSFLRKKQEAD  127
            ++ QRE   + +I+  +++ +    +P    +A + A P  +  PL  ++ ++   +  +
Sbjct  84   DPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLG  140

Query  128  RQKGKKSWQAERYARGTLRKIFERLDRTDGRWLTPGYRSLAGRERLDDLLYLPQLNKHQI  187
            R K+       RY + T+R  +ERL+R  +  +++++R +A+++ L++LL LP++N++Q+
Sbjct  141  RAKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  188  QTLATMTAAMFSSTFEKLCDGFGATDGELTMDVTLKTYQMLARMALHLHAMPPHYDALTT  247
            + L+T+ AA  S  ++  C+++  +D ++  +   ++ + +A  A++L+ +PP ++ L  
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  248  DKDRRNEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDA  307
             K RR+    EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  308  LSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAE  367
            + + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  368  ARGDRAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLR  427
             RGD AVF T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLR
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLR  433

Query  428  WYGIRTVEPHHDGTVHWHMMVFAHPEEIDSIVAITRDIAIQEDRHELGNDITPRFKVEYV  487
            WYG+R  EPHHDGTVHWH++ F +  +  SI A+ R +AI+EDR+ELG +  PRFK E +
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  488  DGSKGTPTSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMAESVERAIGWARLHRV  547
            +  KGTPTSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRV  545

Query  548  RQFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFATYIE  603
            +QF+FFGIP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCFATYI 
Sbjct  546  QQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIM  605

Query  604  KQGGVLVPRKDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRR  663
            KQGGVLVPRK+ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+
Sbjct  606  KQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRK  663

Query  664  KPEAEDSARENGFDLQGGPAAPW----TRGNNCPRVQETDNNGTEQPEERPAPWPQLPDG  719
              + +++A ++      G+ APW    TRGNNCP V++ +++G + P+ +        + 
Sbjct  664  AVDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NE  711

Query  720  VDVDEWMRSLKRHERRALMRSLRDKQAKNSSDEMQSWTQSRKQQRPLPDNHELLAKEWRE  779
             ++++ ++++ + ERR L   LR  ++K  +       Q+  +Q+ L  + EL A+    
Sbjct  712  KELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEG  767

Query  780  SAESLGLHIGEQQMQHLLRGGSL  802
            SA  ++L         LLRGGS+
Sbjct  768  SASEIDL---------LLRGGSI  781

58) O3K_11600 in NC_018658


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  473 bits (1784),  Expect = 2e-134, Method: Compositional matrix adjust.
 Identities = 315/743 (43%), Positives = 496/743 (67%), Gaps = 57/743 (7%)

Query  72   EAGQREKLAQSIISKRRATEQ----DPVARAFATLKALPVYLREPLSRHLSFLRKKQEAD  127
            ++ QRE   + +I+  +++ +    +P    +A + A P  +  PL  ++ ++   +  +
Sbjct  84   DPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLG  140

Query  128  RQKGKKSWQAERYARGTLRKIFERLDRTDGRWLTPGYRSLAGRERLDDLLYLPQLNKHQI  187
            R K+       RY + T+R  +ERL+R  +  +++++R +A+++ L++LL LP++N++Q+
Sbjct  141  RAKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  188  QTLATMTAAMFSSTFEKLCDGFGATDGELTMDVTLKTYQMLARMALHLHAMPPHYDALTT  247
            + L+T+ AA  S  ++  C+++  +D ++  +   ++ + +A  A++L+ +PP ++ L  
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  248  DKDRRNEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDA  307
             K RR+    EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  308  LSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAE  367
            + + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  368  ARGDRAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLR  427
             RGD AVF T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLR
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLR  433

Query  428  WYGIRTVEPHHDGTVHWHMMVFAHPEEIDSIVAITRDIAIQEDRHELGNDITPRFKVEYV  487
            WYG+R  EPHHDGTVHWH++ F +  +  SI A+ R +AI+EDR+ELG +  PRFK E +
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  488  DGSKGTPTSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMAESVERAIGWARLHRV  547
            +  KGTPTSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRV  545

Query  548  RQFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFATYIE  603
            +QF+FFGIP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCFATYI 
Sbjct  546  QQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIM  605

Query  604  KQGGVLVPRKDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRR  663
            KQGGVLVPRK+ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+
Sbjct  606  KQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRK  663

Query  664  KPEAEDSARENGFDLQGGPAAPW----TRGNNCPRVQETDNNGTEQPEERPAPWPQLPDG  719
              + +++A ++      G+ APW    TRGNNCP V++ +++G + P+ +        + 
Sbjct  664  AVDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NE  711

Query  720  VDVDEWMRSLKRHERRALMRSLRDKQAKNSSDEMQSWTQSRKQQRPLPDNHELLAKEWRE  779
             ++++ ++++ + ERR L   LR  ++K  +       Q+  +Q+ L  + EL A+    
Sbjct  712  KELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEG  767

Query  780  SAESLGLHIGEQQMQHLLRGGSL  802
            SA  ++L         LLRGGS+
Sbjct  768  SASEIDL---------LLRGGSI  781

59) UMNK88_1031 in NC_017641


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  473 bits (1782),  Expect = 3e-134, Method: Compositional matrix adjust.
 Identities = 332/803 (42%), Positives = 524/803 (66%), Gaps = 62/803 (7%)

Query  9    WQQPRHAVGR--EGTGIPAPESALSSWLDAYRAENE----RRKEMADAAFSATPLGNLIN  62
            W+ P+ AV    + + + APESALS+ +  Y  +NE    RR  ++D       + +   
Sbjct  26   WNTPKKAVNPYLDPAEF-APESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNE-SR  83

Query  63   KSLDAQEKQDKTITLAGDARKQARGAVD-EAMASLRLLPSYLRDPLIRHLSFLRKKQEAD  121
             +++ +  QD+ I  A  AR Q R   D   +A++   P+ +  PL+ ++ ++   +  +
Sbjct  84   DPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLG  140

Query  122  RRKGKKSWQAERYARGTLRKIFERLDRTDHRWLTPGYRSLAGRERLDDLLYLPQLNKHQI  181
            R K+       RY + T+R  +ERL+R  +  +++++R +A+++ L++LL LP++N++Q+
Sbjct  141  RAKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  182  QTLATMTAAMFSSTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHYDALTT  241
            + L+T+ AA  S  ++  C+++  +D ++  +   +A + +A  A++L+ +PP ++ L  
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  242  DKDRRNEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDA  301
             K RR+    EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  302  LSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAE  361
            + + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  362  ARGDRAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLR  421
             RGD AVF T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLR
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLR  433

Query  422  WYGIRTVEPHHDGTVHWHMMVFAHPDEIETIVSHVCDIAIQEDRHELGDDITPRFKAEYV  481
            WYG+R  EPHHDGTVHWH++ F +  +  +I + +  +AI+EDR+ELG +  PRFK+E +
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  482  DGSKGTPTSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMAESVERAIGWARLHRV  541
            +  KGTPTSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRV  545

Query  542  RQFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFATYIE  597
            +QF+FFGIP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCFATYI 
Sbjct  546  QQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIM  605

Query  598  KQGGVLVPRKDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRR  657
            KQGGVLVPRK+ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+
Sbjct  606  KQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRK  663

Query  658  KPEPEDNAHENGFDLQGGPAAPW----TRGNNCPRVQETGNSGTEQSEERPAPWPQLPDG  713
              + ++ A ++      G+ APW    TRGNNCP V++  +SG + ++ +        + 
Sbjct  664  AVDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NE  711

Query  714  VDVDEWMRSLKRHERRALMRSLRDKQAKNNSDEMQNWTQSRKQPRPLPDNHELLAKEWRE  773
             ++++ ++++ + ERR L   LR  ++K ++       Q+  + + L  + EL A+    
Sbjct  712  KELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEG  767

Query  774  SAESLGLHIGEQQMLHLLRGGSL  796
            SA  ++L         LLRGGS+
Sbjct  768  SASEIDL---------LLRGGSI  781

60) ECOK1_2568 in NC_017628


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  472 bits (1780),  Expect = 4e-134, Method: Compositional matrix adjust.
 Identities = 331/803 (42%), Positives = 523/803 (66%), Gaps = 67/803 (8%)

Query  9    WQQPRHAVGR--EGTGIPAPESALSSWLDAYRVENERCQEMADAAFSATP----LGNLIN  62
            W+ P+ AV    + + + APESALS+ +  Y V+NE+ +++   ++S       + N   
Sbjct  26   WNTPKKAVNPYLDPAEF-APESALSNLIALYAVDNEQ-EQLRRETLSDEVWERYFFNESR  83

Query  63   KSLDAQEKQDKTITLAGDARKQARGAVD-EAMASLRLLPSYLRDPLIRHLSFLRKKQEAD  121
             +++ +  QD+ I  A  AR Q R   D   +A++   P+ +  PL+ ++ ++   +  +
Sbjct  84   DPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLG  140

Query  122  RQKGKKSWQAERYARGNLRKIFERLERTDHRWLTQGYRSLAGRERLDDLLYLPQLNQHQI  181
            R K+       RY +  +R  +ERLER  +  ++ ++R +A+++ L++LL LP++NQ+Q+
Sbjct  141  RAKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  182  QTLATMTAAMFSSTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHYEALNK  241
            + L+T+ AA  S  ++  C+++  +D ++  +   +A + +A  A++L+ +PP +E L +
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  242  SDPDT-----ELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDA  296
                      EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  297  LSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAE  356
            + + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  357  ARGDKAVFLTITCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLR  416
             RGD AVF TITCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLR
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLR  433

Query  417  WYGIRTVEPHHDGTVHWHMMVFAHPEEIDTIVSHTRDIAIQEDRHELGDDITPRFKAEYV  476
            WYG+R  EPHHDGTVHWH++ F +  +  +I +  R +AI+EDR+ELG +  PRFK+E +
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  477  DGSKGTPTSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMAESVERAIGWARLHRV  536
            +  KGTPTSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRV  545

Query  537  RQFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFATYIE  592
            +QF+FFGIP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCFATYI 
Sbjct  546  QQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIM  605

Query  593  KQGGVLVPRQDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRR  652
            KQGGVLVPR++ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+
Sbjct  606  KQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRK  663

Query  653  KPEAEDSSHENGFDLQGGPAAPW----TRGNNCPRVQETDNNGTEQPEERPAPWPQLPDG  708
              + ++++ ++      G+ APW    TRGNNCP V++ +++G + P+ +        + 
Sbjct  664  AVDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NE  711

Query  709  VDVNEWMRSLKRHERRALMRSLRDKQAKNSSDEMQNWTQSRKQPRPLPDNHELLAKEWRE  768
             ++++ ++++ + ERR L   LR  ++K  +       Q+  + + L  + EL A+    
Sbjct  712  KELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEG  767

Query  769  SAESLGLHIGEQQMQHLLRGGSL  791
            SA  ++L         LLRGGS+
Sbjct  768  SASEIDL---------LLRGGSI  781

61) ECO103_1870 in NC_013353


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  471 bits (1776),  Expect = 8e-134, Method: Compositional matrix adjust.
 Identities = 339/808 (42%), Positives = 534/808 (67%), Gaps = 72/808 (8%)

Query  9    WQQPRHAVGR--EGTGIPAPKSALSSWLDAYRVENE----RRQEMADAA-----FSATPL  57
            W+ P+ AV    + + + AP SALS+ +  Y V+NE    RR+ ++D       F+ +  
Sbjct  26   WNTPKKAVNPYLDPAEF-APESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNESR-  83

Query  58   GNLINKNLDAQEKQDKTITLAGDARKQARGAVD-EAMASLRLLPSYLRDPLIRHLSFLRK  116
             + ++++++    QD+ I  A  AR Q R   D   +A++   P+ +  PL+ ++ ++  
Sbjct  84   -DPVQREME----QDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF--  136

Query  117  KQEADRRKGKKSWQAERYARGTLRKIFERLDRTDHRWLTPGYRSLAGRERLDDLLYLPQL  176
             +  +R K+       RY + T+R  +ERL+R  +  +++++R +A+++ L++LL LP++
Sbjct  137  -HSLGRAKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEM  190

Query  177  NKHQIQTLATMTAAMFSSTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHY  236
            N++Q++ L+T+ AA  S  ++  C+++  +D ++  +   +A + +A  A++L+ +PP +
Sbjct  191  NQDQVKRLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAF  249

Query  237  DALTTDKDRRNEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPY  296
            + L   K RR+    EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY
Sbjct  250  EQLRRKKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPY  309

Query  297  LSQDALSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGL  356
            +S +A+ + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGL
Sbjct  310  VSYEAVIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGL  369

Query  357  ELLAEARGDRAVFLTVTCPSKYHATTENGNPNPKWNGATMRDSSDYLVNTFFAAVRKKLN  416
            EL+AE RGD AVF T+TCPS++HAT +NG PNPKW +AT+R+SSDYLV+T FAA RK ++
Sbjct  370  ELIAEMRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMH  428

Query  417  RDGLRWYGIRTVEPHHDGTVHWHMMVFAHPEEIDTIVSHTRDIAIQEDRHELGDDITPRF  476
            + GLRWYG+R  EPHHDGTVHWH++ F +  +  +I +  R +AI+EDR+ELG +  PRF
Sbjct  429  KAGLRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRF  488

Query  477  KAEYVDGSKGTPTSYIATYIGKNLDSRAVGGIDPKTSKPRVDHETGKSMAESVERAIGWA  536
            K+E ++  KGTPTSYIA YI+KN+D+R+++          +  ETG+S+ +S E+  +WA
Sbjct  489  KPELINPRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWA  540

Query  537  RLHRVRQFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLENdamdavlaaadagcf  592
             LHRV+QF+FFGIP+RQ  RELR LA+Q AR       G+  L+N  +DAVLAAADAGCF
Sbjct  541  SLHRVQQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCF  600

Query  593  aTYIEKQGGVLVPRKDYLIRTAYDLAEELNDYGEQSVQIYGIWSPQIGESSRVCTHPDNW  652
            ATYI KQGGVLVPRK+ L+RTAY+L +E + YG+++++IYGIWSP I+E +++CTH+ +W
Sbjct  601  ATYIMKQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSP-IAE-GKICTHAVKW  658

Query  653  KLVRRKPEAEDSARENGFDLQGGPAAPW----TRGNNCPRVQETNNNGTEQPEERPAPWP  708
            K VR+  + +++A ++      G+ APW    TRGNNCP V++ N++G + P+ +     
Sbjct  659  KKVRKAVDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM---  709

Query  709  QLPDGVEVNEWMRSLKRHERRALMRSLRDKQAKNSSDEMQSWTQSRKQQRPLPDNHELLA  768
               +  E+++ ++++ + ERR L   LR  ++K  +       Q+  +Q+ L  + EL A
Sbjct  710  ---NEKELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTA  762

Query  769  KEWRESAESLGLHIGEQQMQHLLRGGSL  796
            +    SA  ++L         LLRGGS+
Sbjct  763  RGFEGSASEIDL---------LLRGGSI  781

62) G2583_2122 in NC_013941


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  470 bits (1773),  Expect = 1e-133, Method: Compositional matrix adjust.
 Identities = 310/736 (43%), Positives = 489/736 (67%), Gaps = 53/736 (7%)

Query  75   QREKLAQSIISKRQATEQDPVARAFATLKVLPVYLREPLSRHLSFLRKKQEADRQKGKKS  134
            ++++L +   + R+    +P    +A +   P  +  PL  ++ ++   +  +R K+   
Sbjct  91   EQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLGRAKA---  144

Query  135  WQAERYARGTLRKIFERLDRTDHRWLTPGYRSLAGRERLDDLLYLPQLNKHQIQTLATMT  194
                RY + T+R  +ERL+R  +  +++++R +A+++ L++LL LP++N++Q++ L+T+ 
Sbjct  145  --YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQVKRLSTLV  202

Query  195  AAMFSSTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHYDALTTDKDRRNE  254
            AA  S  ++  C+++  +D ++  +   +A + +A  A++L+ +PP ++ L   K RR+ 
Sbjct  203  AAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRKKRRRKP  261

Query  255  PDTELLPGATLRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDALSEFRAQ  314
               EL+P +  R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A+ + R Q
Sbjct  262  VPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAVIHKREQ  321

Query  315  REKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAEARGDKAV  374
            R K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE RGD AV
Sbjct  322  RRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEMRGDCAV  381

Query  375  FLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLRWYGIRTV  434
            F T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLRWYG+R  
Sbjct  382  FYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLRWYGVRVA  440

Query  435  EPHHDGTVHWHMMVFAHPEEIDTIVSHTRDIAIQEDRHELGNDITPRFKVEYVDGSKGTP  494
            EPHHDGTVHWH++ F +  +  +I +  R +AI+EDR+ELG +  PRFK E ++  KGTP
Sbjct  441  EPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELINPRKGTP  500

Query  495  TSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMAESVERAIGWARLHRVRQFQFFG  554
            TSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV+QF+FFG
Sbjct  501  TSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRVQQFRFFG  552

Query  555  IPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFATYIEKQGGVLV  610
            IP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCFATYI KQGGVLV
Sbjct  553  IPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLV  612

Query  611  PRKDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRRKPEAEDS  670
            PRK+ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+  + +++
Sbjct  613  PRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRKAVDVQEA  670

Query  671  TRENGFDLQGGPAAPW----TRGNNCPRVQETDNNGTEQPEERPAPWPQLPDGVDVDEWM  726
            + ++      G+ APW    TRGNNCP V++ +++G + P+ +        +  ++++ +
Sbjct  671  AADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NEKELQDYL  718

Query  727  RSLKRHERRALMRSLRDKQAKNSSDEMQSWTQSRKQQRPLPDNHELLAKEWRESAESLGL  786
            +++ + ERR L   LR  ++K  +       Q+  +Q+ L  + EL A+    SA  ++L
Sbjct  719  HNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEGSASEIDL  774

Query  787  HIGEQQMQHLLRGGSL  802
                     LLRGGS+
Sbjct  775  ---------LLRGGSI  781

63) ECO26_2450 in NC_013361


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  470 bits (1770),  Expect = 3e-133, Method: Compositional matrix adjust.
 Identities = 311/736 (43%), Positives = 487/736 (67%), Gaps = 53/736 (7%)

Query  75   QREKLAQSIISKRQATEQDPVARAFATLKVLPVYLREPLSRHLSFLRKKQESDRQKGKKS  134
            ++++L +   + R+    +P    +A +   P  +  PL  ++ ++   +  +R K+   
Sbjct  91   EQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLGRAKA---  144

Query  135  WQAERYARGNLRKIFERLERTDHRWLTPGYRSLTGRERLDDLLYLPQLNKHQIQTLATMT  194
                RY +  +R  +ERLER  +  +++++R +++++ L++LL LP++N++Q++ L+T+ 
Sbjct  145  --YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQVKRLSTLV  202

Query  195  AAMFSSTFEKLCDSFGATDGELTMDVTLKAYQMLARMALHLHAMPPHYDALTTDKDRRNE  254
            AA  S  ++  C+ +  +D ++  +   +A + +A  A++L+ +PP ++ L   K RR+ 
Sbjct  203  AAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRKKRRRKP  261

Query  255  PDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDALSEFRAQ  314
               EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A+ + R Q
Sbjct  262  VPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAVIHKREQ  321

Query  315  REKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAEARGDRAV  374
            R K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE RGD AV
Sbjct  322  RRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEMRGDCAV  381

Query  375  FLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLRWYGIRTV  434
            F T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLRWYG+R  
Sbjct  382  FYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLRWYGVRVA  440

Query  435  EPHHDGTVHWHMMVFAHPEEIDSIVAITRDIAIQEDRHELGNDITPRFKVEYVDGSKGTP  494
            EPHHDGTVHWH++ F +  +  SI A+ R +AI+EDR+ELG +  PRFK E ++  KGTP
Sbjct  441  EPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELINPRKGTP  500

Query  495  TSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMAESVERAIGWARLHRVRQFQFFG  554
            TSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV+QF+FFG
Sbjct  501  TSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRVQQFRFFG  552

Query  555  IPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFATYIEKQGGVLV  610
            IP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCFATYI KQGGVLV
Sbjct  553  IPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLV  612

Query  611  PRKDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRRKPEPEDN  670
            PRK+ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+  + ++ 
Sbjct  613  PRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRKAVDVQEA  670

Query  671  AHENGFDLQGGPAASW----TRGNNCPRVQETDNNGTKQPEERPAPWPQLPDGVDVDEWM  726
            A ++      G+ A+W    TRGNNCP V++ +++G   P+ +        +  ++++ +
Sbjct  671  AADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NEKELQDYL  718

Query  727  RSLKRHERRALMRSLRDKQAKNSSDEMQSWTQSRKQQRPLPDNHELLAKEWRESAESLGL  786
            +++ + ERR L   LR  ++K  +       Q+  +Q+ L  + EL A+    SA  ++L
Sbjct  719  HNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEGSASEIDL  774

Query  787  HIGEQQMQHLLRGGSL  802
                     LLRGGS+
Sbjct  775  ---------LLRGGSI  781

64) EC55989_2098 in NC_011748


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  469 bits (1766),  Expect = 5e-133, Method: Compositional matrix adjust.
 Identities = 337/803 (42%), Positives = 528/803 (66%), Gaps = 62/803 (7%)

Query  9    WQQPRHAVGR--EGTGIPAPESALSSWLDAYRAENE----RRQEMADAAFSATPLGNLIN  62
            W+ P+ AV    + + + APESALS+ +  Y  +NE    RR+ ++D       + +   
Sbjct  26   WNTPKKAVNPYLDPAEF-APESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNE-SR  83

Query  63   KSLDAQEKQDKTITLAGDARKQARGAVD-EAMASLRLLPSYLRDPLIRHLSFLRKKQEAD  121
             +++ +  QD+ I  A  AR Q R   D   +A++   P+ +  PL+ ++ ++   +  +
Sbjct  84   DPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLG  140

Query  122  RQKGKNARQAERYARGTLRKIFERLERTDHRWLTSGYRSLAGRERLDDLLYLPQLNKHQI  181
            R K+       RY + T+R  +ERLER  +  +++++R +A+++ L++LL LP++N++Q+
Sbjct  141  RAKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  182  QTLATMTAAMFSSTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHYDALTT  241
            + L+T+ AA  S  ++  C+++  +D ++  +   +A + +A  A++L+ +PP ++ L  
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  242  DKDRRHEPDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDA  301
             K RR     EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  302  LSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAE  361
            + + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  362  ARGDKAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDDLR  421
             RGD AVF T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ +LR
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLR  433

Query  422  WYGIRTVEPHHDGTVHWHMMVFAHPEEIDTIVSHTRDIAIQEDRHELGNDITPRFKVEYV  481
            WYG+R  EPHHDGTVHWH++ F +  +  +I +  R +AI+EDR+ELG +  PRFK E +
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  482  DGSKGTPTSYIATYIGKNLDSRAVDGIDPKTDKPRVDHETGKSMAESVERAIGWARLHRV  541
            +  KGTPTSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRV  545

Query  542  RQFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLENdamdavlaaadagcfaTYIE  597
            +QF+FFGIP+RQ  RELR LA+Q AR       G+  L+N  +DAVLAAADAGCFATYI 
Sbjct  546  QQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIM  605

Query  598  KQGGVLVPRKDYLIRTAYDLAEELNDYGEQSVQIYGIWSPQIGESSRVCTHPDNWKLVRR  657
            KQGGVLVPRK+ L+RTAY+L +E + YG+++++IYGIWSP I+E +++CTH+ +WK VR+
Sbjct  606  KQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSP-IAE-GKICTHAVKWKKVRK  663

Query  658  KPEAEDSARENGFDLQGGPAAPW----TRGNNCPRVQETDNNGTEQPEERPAPWPQLPDG  713
              + +++A ++      G+ APW    TRGNNCP V++ +++G + P+ +        + 
Sbjct  664  AVDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NE  711

Query  714  VEVNEWMRSLKRHERRALMRSLRDKQAKNSSDEAQSWTQSRKQQRPLPDNHELLAKEWRE  773
             E+++ ++++ + ERR L   LR  ++K  +       Q+  +Q+ L  + EL A+    
Sbjct  712  KELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEG  767

Query  774  SAESLGLHIGEQQMQHLLRGGSL  796
            SA  ++L         LLRGGS+
Sbjct  768  SASEIDL---------LLRGGSI  781

65) ETEC_1982 in NC_017633


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  469 bits (1767),  Expect = 5e-133, Method: Compositional matrix adjust.
 Identities = 332/803 (42%), Positives = 524/803 (66%), Gaps = 67/803 (8%)

Query  9    WQQPRHAVGR--EGTGIPAPESALSSWLDAYRAENERCQEMADAAFSATP----LGNLIN  62
            W+ P+ AV    + + + APESALS+ +  Y  +NE+ +++   ++S       + N   
Sbjct  26   WNTPKKAVNPYLDPAEF-APESALSNLIALYAVDNEQ-EQLRRETLSDEVWERYFFNESR  83

Query  63   KSLDAQEKQDKTITLAGDARKQVRGAVD-EAMASLRLLPSYLRDPLIRHLSFLRKKQESD  121
             +++ +  QD+ I  A  AR Q R   D   +A++   P+ +  PL+ ++ ++   +  +
Sbjct  84   DPVQREMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLG  140

Query  122  RQKGKKNQQAERYARGTLRKIFERLDRTDGRWLTPGYRSLAGRERLDDLLYLPQLNKHQI  181
            R K+       RY + T+R  +ERL+R  +  +++++R +A+++ L++LL LP++N++Q+
Sbjct  141  RAKA-----YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQV  195

Query  182  QTLATMTAAMFSSTFETLCDGFGARDGELTMDVMLKAYRMLARIALRLHIMPPHYEALNK  241
            + L+T+ AA  S  +++ C+++   D ++  + + +A   +A  A+RL+++PP +E L +
Sbjct  196  KRLSTLVAAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRR  254

Query  242  SDPDT-----ELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDA  296
                      EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A
Sbjct  255  KKRRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEA  314

Query  297  LSEFRAQREKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPVHRKAEMMATMKGLELLAE  356
            + + R QR K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE
Sbjct  315  VIHKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAE  374

Query  357  ARGDKAVFLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLR  416
             RGD AVF T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLR
Sbjct  375  MRGDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLR  433

Query  417  WYGIRTVEPHHDGTVHWHMMVFAHPDEIETIVSHVCDIAIQEDRHELGDDITPRFKAEYV  476
            WYG+R  EPHHDGTVHWH++ F +  +  +I + +  +AI+EDR+ELG +  PRFK+E +
Sbjct  434  WYGVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELI  493

Query  477  DGSKGTPTSYIATYIGKNLDSRAVDGIDQKTGKPRVDHETGKSMAESVERAIGWARLHRV  536
            +  KGTPTSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV
Sbjct  494  NPRKGTPTSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRV  545

Query  537  RQFQFFGIPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFATYIE  592
            +QF+FFGIP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCFATYI 
Sbjct  546  QQFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIM  605

Query  593  KQGGVLVPRKDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRR  652
            KQGGVLVPRK+ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+
Sbjct  606  KQGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRK  663

Query  653  KPEAEDSARENGFDLQGGPAAPW----TRGNNCPRVQETGNSGTEQSKERPAPWPQLPDG  708
              + +++A ++      G+ APW    TRGNNCP V++  +SG + +  +        + 
Sbjct  664  AVDVQEAAADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NE  711

Query  709  VEVNEWMRSLKRHERRALMRSLRDKQAKNSSDEMQSWTQSRKQQRPLPDNHELLAKEWRE  768
             E+++ ++++ + ERR L   LR  ++K  +       Q+  +Q+ L  + EL A+    
Sbjct  712  KELQDYLHNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEG  767

Query  769  SAESLGLHIGEQQMQHLLRGGSL  791
            SA  ++L         LLRGGS+
Sbjct  768  SASEIDL---------LLRGGSI  781

66) ECO26_2771 in NC_013361


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  468 bits (1765),  Expect = 6e-133, Method: Compositional matrix adjust.
 Identities = 309/736 (42%), Positives = 488/736 (67%), Gaps = 53/736 (7%)

Query  75   QREKLAQSIISKRQATEQDPVARAFATLKVLPVYLREPLSRHLSFLRKKQEADRQKGKKS  134
            ++++L +   + R+    +P    +A +   P  +  PL  ++ ++   +  +R K+   
Sbjct  91   EQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYF---HSLGRAKA---  144

Query  135  WQAERYARGTLRKIFERLDRTDSRWLTPGYRSLAGRERLDDLLYLPQLNKHQIQTLATMT  194
                RY + T+R  +ERL+R     +++++R +A+++ L++LL LP++N++Q++ L+T+ 
Sbjct  145  --YSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQVKRLSTLV  202

Query  195  AAMFSGTFEKLCDGFGATDGELTMDVTLKAYQMLARMALHLHAMPPHYDALTTDKDRRNE  254
            AA  S  ++  C+++  +D ++  +   +A + +A  A++L+ +PP ++ L   K RR+ 
Sbjct  203  AAHMSMCLDAACGDLFVSD-DVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRKKRRRKP  261

Query  255  PDTELLPGAILRLTCAEWWKRKLWLLRCEWREEQLRAACLVSRKTSPYLSQDALSEFRAQ  314
               EL+P ++ R+ CA+WW RKLW +RCEWREEQLRA CLV++K+SPY+S +A+ + R Q
Sbjct  262  VPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAVIHKREQ  321

Query  315  REKTRDFLKSFMLENEDGFTIDLETVYYAGVSNPIHRKAEMMATMKGLELLAEARGDRAV  374
            R K+ +F++S  L NEDG T+D+E V  A+ SNP HR+ EMMA +KGLEL+AE RGD AV
Sbjct  322  RRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEMRGDCAV  381

Query  375  FLTVTCPSKYHATTENGHPNPKWNGATMRDSSDYLVNTFFAAVRKKLNRDGLRWYGIRTV  434
            F T+TCPS++HAT +NG+PNPKW +AT+R+SSDYLV+T FAA RK +++ GLRWYG+R  
Sbjct  382  FYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLRWYGVRVA  440

Query  435  EPHHDGTVHWHMMVFAHPEEIDTIVSHTRDIAIQEDRHELGNDITPRFKVEYVDGSKGTP  494
            EPHHDGTVHWH++ F +  +  +I +  R +AI+EDR+ELG +  PRFK E ++  KGTP
Sbjct  441  EPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELINPRKGTP  500

Query  495  TSYIATYIGKNLDSRAVDGIDPKTGKPRVDHETGKSMAESVERAIGWARLHRVRQFQFFG  554
            TSYIA YI+KN+D+R++           +  ETG+S+ +S E+  +WA LHRV+QF+FFG
Sbjct  501  TSYIAKYISKNIDGRGLA--------KEISKETGRSLRDSAEHVSAWASLHRVQQFRFFG  552

Query  555  IPSRQVWRELRRLASQMARNP----EGPQRLKddamdavlaaadaGCFATYIEKQGGVLV  610
            IP+RQ  RELR LA+Q AR       G+  L +  +DAVLAAADAGCFATYI KQGGVLV
Sbjct  553  IPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLV  612

Query  611  PRKDYLIRTAYDLADELNDYGEQSVQIYGIWSPLIGESSRVCTHPDNWKLVRRKPEAEDS  670
            PRK+ L+RTAY+L DE + YG+++++IYGIWSP+    +++CTH+ +WK VR+  + +++
Sbjct  613  PRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRKAVDVQEA  670

Query  671  TRENGFDLQGGPAAPW----TRGNNCPRVQETDNNGTEQPEERPAPWPQLPDGVDVNEWM  726
            + ++      G+ APW    TRGNNCP V++ +++G + P+ +        +  ++++ +
Sbjct  671  AADQ------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTM------NEKELQDYL  718

Query  727  RSLKRHERRALMRSLRDKQAKNSSDEMQNWTQSRKQPRPLPDNHELLAKEWRESAESLGL  786
            +++ + ERR L   LR  ++K  +       Q+  + + L  + EL A+    SA  ++L
Sbjct  719  HNMGQKERRELTARLRLVKPKRKT----VYKQNISEQQRLQLEAELTARGFEGSASEIDL  774

Query  787  HIGEQQMQHLLRGGSL  802
                     LLRGGS+
Sbjct  775  ---------LLRGGSI  781

67) A464_1368 in NC_021870


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  456 bits (1718),  Expect = 3e-129, Method: Compositional matrix adjust.
 Identities = 302/719 (43%), Positives = 478/719 (67%), Gaps = 44/719 (6%)

Query  9    WNAPRPAIDPATFGNEHPEESSLTRLIALF--DEEEERARWQKSGDG--PKTYPDRIKDA  64
            WN+P+ A++P     E + ES+L+ LIAL+  D+E+E+ R++  +D    + + +  +D+
Sbjct  26   WNTPKKAVNPYLDPAEFAPESALSNLIALYAVDNEQEQLRRETLSDEVWERYFFNESRDP  85

Query  65   AERKEAARNSklaelakkrlaaaSDRDNPVITRLNALPSYLRNPLYSHLRFLRAKERRAE  124
             +R E  ++  + +    R     + D  +I+ + A P+ + +PL  +++++++  R   
Sbjct  86   VQR-EMEQDRLINHAKTAREQQRFNPDLVIIANVGAQPAHISKPLLERIKYFHSLGR---  141

Query  125  EAGKPQRPATRYIHGKLTRILDRIERTDARFCTLGYQRVVVIERLDALLTLPQLSKREVQ  184
                  ++ +RY++  +   L+R+ER      + +++ +   + L++LL LP++++ +V+
Sbjct  142  -----AKAYSRYLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQVK  196

Query  185  TAATLTASAFNCEYDRLCNQY--GDEMTLNDALTVYQKLADRALLLNITPPYYESLrtdr  242
              +TL A+  +   D  C +   +D++  ++     +++A  A+ L++ PP +E LR  +
Sbjct  197  RLSTLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRKK  256

Query  243  drrtppdidKLPGALLRLSCADWWNTKLWRLRRIWREEQLRSACLVSRKKSAYLSQDALT  302
             RR P   + +P +L R+ CADWW  KLW++R  WREEQLR+ CLV++K S+Y+S +A+ 
Sbjct  257  RRRKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAVI  316

Query  303  EFREQRRRMKQFLKSHELVNEDGFTIDMADVYYSGNSNPVHRRHEMMANMKGLELIAKER  362
            + REQRR+  +F++SHEL+NEDG T+DM DV  ++NSNP HRR+EMMA +KGLELIA  R
Sbjct  317  HKREQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEMR  376

Query  363  GDDAVFVTVTCPSRCHATTADGHPNPKWDGSTIRDSSDYLVNVFFATVRRKLNRKKLRWY  422
            GD AVF T+TCPSR HAT  +G+PNPKW ++T+R+SSDYLV+  FA+ R+ +++  LRWY
Sbjct  377  GDCAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDT-FAAFRKAMHKAGLRWY  435

Query  423  GVRVAEPHHDGTVHWHMMIFVRPEERETIISEMEKIAIREDREELGDDITPRFKQELITE  482
            GVRVAEPHHDGTVHWH++ F+R  +R +I + + K+AIREDREELG +  PRFK ELI  
Sbjct  436  GVRVAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELINP  495

Query  483  EKGTPTGYIATYIGKNLD-KGAVKGNDPKTGKPLIDDESGLTMAESVERAVGWAGLHGVR  541
             KGTPT+YIA YI+KN+D +G  K          I  E+G ++ +S E+  +WA+LH V+
Sbjct  496  RKGTPTSYIAKYISKNIDGRGLAKE---------ISKETGRSLRDSAEHVSAWASLHRVQ  546

Query  542  QFQFFGIPSRQVWRELRRLACQMERNPD----GPQKLKDPAMDNVLVAADMGCFASYIMK  597
            QF+FFGIP+RQ  RELR LA Q  R  +    G+  L +P +D VL AAD GCFA+YIMK
Sbjct  547  QFRFFGIPGRQAYRELRLLAGQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMK  606

Query  598  QGGVLVPRKDYVIRTAYDIADKPNDYGETGIQIYGIWSPLIGPESRICTHPDNWTLIKKQ  657
            QGGVLVPRK+ ++RTAY++ D P+ YG+ GI+IYGIWSP+  +E++ICTH+ +W  ++K 
Sbjct  607  QGGVLVPRKHHLVRTAYELNDEPSAYGDHGIRIYGIWSPI--AEGKICTHAVKWKKVRKA  664

Query  658  PKPKDDAPEQGFEVDLPGGFVAPW----TRGNNCTPIQKMNLPTAEDRVMRALSKEGIH  712
               ++ A++Q        G  APW    TRGNNC P++++N + ++   +++++   ++
Sbjct  665  VDVQEAAADQ--------GACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQ  715

68) ECA2627 in NC_004547


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  357 bits (1341),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 254/613 (42%), Positives = 393/613 (65%), Gaps = 35/613 (5%)

Query  137  FFMGTVKKALLRLDAVRVKQ--------GVRDGFTSELASYWRARWQHLAEFTKHEAINA  188
            ++  T++  L RL+ VR  Q        + +DG+ + L          L+E  +++    
Sbjct  148  YLQKTIRPCLERLERVRDSQVSASFRFMASHDGLEGLLV---------LPEMNQDQVKRL  198

Query  189  GHAIAASITEMFETECGNTLPSDMTNDEIQSLFW-HLGHEMLALRVTPPCWGVIIGDNES  247
            +  +AA ++  +++ CG+ + SD  + E     W +++ E + L V PP    +   +  
Sbjct  199  STLVAAHMSMCLDAACGDLFVSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRKKRR  258

Query  248  KKR-----ICSAILRIISPEWWGRKLWRLRCEWRENQFRAIGVIHKKRMPYVSIDALNQW  302
            +K      I +++ R++ ++WW RKLW++RCEWRE+Q+RA+ +++KK  PYVS +A+ + 
Sbjct  259  RKPVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAVIHK  318

Query  303  QEQRRKNREFFKAHELVDEDGNVASLENMVYASISNPVIRRHELMTRMAGVEMVAISRSD  362
            +EQRRK+ EFF++HEL++EDG+   +E++V AS SNP  RR+E+M+ + G+E++A  R+D
Sbjct  319  REQRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEMRGD  378

Query  363  EGVFLTITCPSRYHATIQSGHQNPKWDTSSPRQGQRYLCKTWAKAMSKLNRRGLRPYGFR  422
             +VF TITCPSR+HAT+++G+ NPKW +++ RQ+  YL  T A     +++ GLR YG R
Sbjct  379  CAVFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRWYGVR  438

Query  423  VAEPHHDATPHWHVLLFMPPEDRKEITEILREYFIAVDRAELGRNTGARFKAKRLDPQKG  482
            VAEPHHD+T HWH+L FM   DR+ IT +LR + I  DR ELG NTG+RFK+  ++P+KG
Sbjct  439  VAEPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELINPRKG  498

Query  483  SATAYVAKYISKNIDGYALDGERDNETGKPLRETARFAMAWASQHNIRQFQPFGLPPVTV  542
            ++T+Y+AKYISKNIDG +L  E  +ETG++LR++A    AWAS H ++QF+ FG+P    
Sbjct  499  TPTSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIPGRQA  558

Query  543  WRELRKLANQLTAVQKEAGTFRRGASQLADPAMDAVLASADAGCFATYIEKQGGVLIPRE  602
             RELR LA Q + VQ E    + GA+ L +P +DAVLA+ADAGCFATYI KQGGVL+PR 
Sbjct  559  YRELRLLAGQAARVQGER---KAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPRK  615

Query  603  LYTVRIAYEEADEQNDYGETPEKIFGVFSPRLGEISRICTRLVKW-KIRKKQAADAGVND  661
               VR AYE  DE + YG+   +I+G+ SP ++E ++ICT+ VKW K+RK    + +  D
Sbjct  616  HHLVRTAYELNDEPSAYGDHGIRIYGIWSP-IAE-GKICTHAVKWKKVRKAVDVQEAAAD  673

Query  662  GADRGLAVTSPTGDAWSSVNNSTGDEKISISEPADREICSTSEPEITDF-ELMTDTERRG  720
             +       +P   +++  NN    E+++ S     +I + +E E+ D+ + M + ERR 
Sbjct  674  QGA-----CAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHNMGQKERRE  728

Query  721  LLNRLRSQPPDRR  733
            L  RLR   P R+
Sbjct  729  LTARLRLVKPKRK  741

69) PC1_2638 in NC_012917


> NC_003198_P9|111|G100|16763098|NP_458715.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|90314..92728|STY4635|-|conserved 
hypothetical protein
Length=804

 Score =  354 bits (1330),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 254/610 (42%), Positives = 391/610 (65%), Gaps = 29/610 (4%)

Query  137  FFMGTVKKALLRLDAVRAKQGVRNGF-----TSELASYWRARWMHLAEFTKHEAINAGHA  191
            ++  T++  L RL+ VR  Q V  +F        L +      + L+E  +++    +  
Sbjct  148  YLQKTIRPCLERLERVRDSQ-VSASFRFMASHDGLEGL-----LVLPEMNQDQVKRLSTL  201

Query  192  IAASIAEMFETECGNT-LPADMTNDDIQALFW-HLGREMLALRVTPPCWGVIIGDNESRN  249
            +AA ++  +++ CG+  ++ D+  ++I+   W +++ E + L V PP    +   +  R+
Sbjct  202  VAAHMSMCLDAACGDLFVSDDVKPEEIRQA-WERVAAEAMRLEVIPPAFEQLRRKKRRRK  260

Query  250  RI-Y----SAILRITNADWWGRKLWRLRCEWRENQFRAIGVIHKKRMQYVSIDALNQWQE  304
             + Y    +++ R+  ADWW RKLW++RCEWRE+Q+RA+ +++KK   YVS +A+ + +E
Sbjct  261  PVPYELIPPSLARMLCADWWYRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAVIHKRE  320

Query  305  QRRKNREFFKAHELVDEDGNVASLENMVYASVSNPVIRRHELMTRMAGVEMVAISRSDEG  364
            QRRK+ EFF++HEL++EDG+   +E++V AS SNP  RR+E+M+ + G+E++A  R+D +
Sbjct  321  QRRKSLEFFRSHELINEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEMRGDCA  380

Query  365  VFLTITCPSRYHATIQSGHQNPKWDTSSPRQGQRYLCKTWAKAMSKLNRRGLRPYGFRVA  424
            VF TITCPSR+HAT+++G+ NPKW +++ RQ+  YL  T A     +++ GLR YG RVA
Sbjct  381  VFYTITCPSRFHATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKAGLRWYGVRVA  440

Query  425  EPHHDATPHWHVLLFMPPEDRKEITEILREYFIAVDRAELGRNTGARFKAKRLDPKKGSA  484
            EPHHD+T HWH+L FM   DR+ IT +LR + I  DR ELG NTG+RFK+  ++P+KG++
Sbjct  441  EPHHDGTVHWHLLCFMRKKDRRSITALLRKFAIREDREELGANTGPRFKPELINPRKGTP  500

Query  485  TAYVAKYISKNIDGYALDGERDNETGKPLRETAKFAMAWASQHNIRQFQPFGLPPVTVWR  544
            T+Y+AKYISKNIDG +L  E  +ETG++LR++A    AWAS H ++QF+ FG+P     R
Sbjct  501  TSYIAKYISKNIDGRGLAKEISKETGRSLRDSAEHVSAWASLHRVQQFRFFGIPGRQAYR  560

Query  545  ELRKLANQLIAVQKEAGTFKRGTAQLADPAMDAVLASADAGCFATYIEKQGGVLIPRELY  604
            ELR LA Q   VQ E    K G++ L +P +DAVLA+ADAGCFATYI KQGGVL+PR   
Sbjct  561  ELRLLAGQAARVQGER---KAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPRKHH  617

Query  605  TVRIAYEEADEQNDYGETPEKIFGVFSPRLGELSRICTRLVKWKIRKKQaadagasdsag  664
             VR AYE  DE + YG+   +I+G+ SP ++E ++ICT+ VKWK  +K      A+    
Sbjct  618  LVRTAYELNDEPSAYGDHGIRIYGIWSP-IAE-GKICTHAVKWKKVRKAVDVQEAAA---  672

Query  665  RDLAVTSPAGDAWSSVNNSTGDEKVSISEPADREIGSTSEPEITDFEH-MTDAELRGLLN  723
             D +  +P   +++  NN    E+++ S     +I + +E E+ D+ H M + E R L  
Sbjct  673  -DQGACAPWTRTRTRGNNCPPVENLNKSGGDLPDIKTMNEKELQDYLHNMGQKERRELTA  731

Query  724  RLRSQPPDRR  733
            RLR   P R+
Sbjct  732  RLRLVKPKRK  741