Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of shiE gene of NC_004741_P2

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) shiE
( NP_839225.1 )

hypothetical protein

NC_004741
(Shigella flexneri 2457T)

3e-153

100

2) shiE
( NP_709452.1 )

hypothetical protein

NC_004337
(Shigella flexneri 301)

2e-152

3) SFxv_4045
( YP_005729311.1 )

IS600 ORF2

NC_017328
(Shigella flexneri 2002017)

9e-150

100

4) EC55989_4647
( YP_002405522.1 )

hypothetical protein

NC_011748
(Escherichia coli 55989)

4e-123

• Sequence Alignments

1) shiE in NC_004741


> NC_004741_P2|11|G11|30065054|NP_839225.1|Shigella_flexneri_2a_str._2457T|-|15629..16600|shiE|S4829|hypothetical 
protein
Length=323

 Score =  534 bits (2014),  Expect = 3e-153, Method: Compositional matrix adjust.
 Identities = 323/323 (100%), Positives = 323/323 (100%), Gaps = 0/323 (0%)

Query  1    MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPW  60
            MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPW
Sbjct  1    MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPW  60

Query  61   SETKAAYRCFSNDKVSANKIMTPHKENITERAQQFKRVLVLQDTTELNYSGQKEKQGVGP  120
            SETKAAYRCFSNDKVSANKIMTPHKENITERAQQFKRVLVLQDTTELNYSGQKEKQGVGP
Sbjct  61   SETKAAYRCFSNDKVSANKIMTPHKENITERAQQFKRVLVLQDTTELNYSGQKEKQGVGP  120

Query  121  KKHKDERNLFLHPQLVISESGVCLGVYDDYQWFRDELKTSKNTRQEICNDLLHKKHVSEK  180
            KKHKDERNLFLHPQLVISESGVCLGVYDDYQWFRDELKTSKNTRQEICNDLLHKKHVSEK
Sbjct  121  KKHKDERNLFLHPQLVISESGVCLGVYDDYQWFRDELKTSKNTRQEICNDLLHKKHVSEK  180

Query  181  ETWRWVEGYNKATELARQCPDTHVLSISDREGDFYDLFERAAQTPGIKADWLVRMKFNNR  240
            ETWRWVEGYNKATELARQCPDTHVLSISDREGDFYDLFERAAQTPGIKADWLVRMKFNNR
Sbjct  181  ETWRWVEGYNKATELARQCPDTHVLSISDREGDFYDLFERAAQTPGIKADWLVRMKFNNR  240

Query  241  ATLNINGKRDHRLLHERIMEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYS  300
            ATLNINGKRDHRLLHERIMEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYS
Sbjct  241  ATLNINGKRDHRLLHERIMEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYS  300

Query  301  SKVMIISLFDSTVMPDKYRHNGK  323
            SKVMIISLFDSTVMPDKYRHNGK
Sbjct  301  SKVMIISLFDSTVMPDKYRHNGK  323

2) shiE in NC_004337


> NC_004741_P2|11|G11|30065054|NP_839225.1|Shigella_flexneri_2a_str._2457T|-|15629..16600|shiE|S4829|hypothetical 
protein
Length=323

 Score =  531 bits (2005),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 322/323 (99%), Positives = 322/323 (99%), Gaps = 0/323 (0%)

Query  1    MPCFTAMRAEIAQMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPW  60
            MPCFTAMRAEIA MSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPW
Sbjct  1    MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPW  60

Query  61   SETKAAYRCFSNDKVSANKIMTPHKENITERAQQFKRVLVLQDTTELNYSGQKEKQGVGP  120
            SETKAAYRCFSNDKVSANKIMTPHKENITERAQQFKRVLVLQDTTELNYSGQKEKQGVGP
Sbjct  61   SETKAAYRCFSNDKVSANKIMTPHKENITERAQQFKRVLVLQDTTELNYSGQKEKQGVGP  120

Query  121  KKHKDERNLFLHPQLVISESGVCLGVYDDYQWFRDELKTSKNTRQEICNDLLHKKHVSEK  180
            KKHKDERNLFLHPQLVISESGVCLGVYDDYQWFRDELKTSKNTRQEICNDLLHKKHVSEK
Sbjct  121  KKHKDERNLFLHPQLVISESGVCLGVYDDYQWFRDELKTSKNTRQEICNDLLHKKHVSEK  180

Query  181  ETWRWVEGYNKATELARQCPDTHVLSISDREGDFYDLFERAAQTPGIKADWLVRMKFNNR  240
            ETWRWVEGYNKATELARQCPDTHVLSISDREGDFYDLFERAAQTPGIKADWLVRMKFNNR
Sbjct  181  ETWRWVEGYNKATELARQCPDTHVLSISDREGDFYDLFERAAQTPGIKADWLVRMKFNNR  240

Query  241  ATLNINGKRDHRLLHERIMEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYS  300
            ATLNINGKRDHRLLHERIMEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYS
Sbjct  241  ATLNINGKRDHRLLHERIMEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYS  300

Query  301  SKVMIISLFDSTVMPDKYRHNGK  323
            SKVMIISLFDSTVMPDKYRHNGK
Sbjct  301  SKVMIISLFDSTVMPDKYRHNGK  323

3) SFxv_4045 in NC_017328


> NC_004741_P2|11|G11|30065054|NP_839225.1|Shigella_flexneri_2a_str._2457T|-|15629..16600|shiE|S4829|hypothetical 
protein
Length=323

 Score =  522 bits (1970),  Expect = 9e-150, Method: Compositional matrix adjust.
 Identities = 317/317 (100%), Positives = 317/317 (100%), Gaps = 0/317 (0%)

Query  1    MRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPWSETKAA  60
            MRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPWSETKAA
Sbjct  7    MRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPWSETKAA  66

Query  61   YRCFSNDKVSANKIMTPHKENITERAQQFKRVLVLQDTTELNYSGQKEKQGVGPKKHKDE  120
            YRCFSNDKVSANKIMTPHKENITERAQQFKRVLVLQDTTELNYSGQKEKQGVGPKKHKDE
Sbjct  67   YRCFSNDKVSANKIMTPHKENITERAQQFKRVLVLQDTTELNYSGQKEKQGVGPKKHKDE  126

Query  121  RNLFLHPQLVISESGVCLGVYDDYQWFRDELKTSKNTRQEICNDLLHKKHVSEKETWRWV  180
            RNLFLHPQLVISESGVCLGVYDDYQWFRDELKTSKNTRQEICNDLLHKKHVSEKETWRWV
Sbjct  127  RNLFLHPQLVISESGVCLGVYDDYQWFRDELKTSKNTRQEICNDLLHKKHVSEKETWRWV  186

Query  181  EGYNKATELARQCPDTHVLSISDREGDFYDLFERAAQTPGIKADWLVRMKFNNRATLNIN  240
            EGYNKATELARQCPDTHVLSISDREGDFYDLFERAAQTPGIKADWLVRMKFNNRATLNIN
Sbjct  187  EGYNKATELARQCPDTHVLSISDREGDFYDLFERAAQTPGIKADWLVRMKFNNRATLNIN  246

Query  241  GKRDHRLLHERIMEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYSSKVMII  300
            GKRDHRLLHERIMEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYSSKVMII
Sbjct  247  GKRDHRLLHERIMEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYSSKVMII  306

Query  301  SLFDSTVMPDKYRHNGK  317
            SLFDSTVMPDKYRHNGK
Sbjct  307  SLFDSTVMPDKYRHNGK  323

4) EC55989_4647 in NC_011748


> NC_004741_P2|11|G11|30065054|NP_839225.1|Shigella_flexneri_2a_str._2457T|-|15629..16600|shiE|S4829|hypothetical 
protein
Length=323

 Score =  434 bits (1633),  Expect = 4e-123, Method: Compositional matrix adjust.
 Identities = 260/265 (99%), Positives = 261/265 (99%), Gaps = 0/265 (0%)

Query  44   TWSETKAAYLCFSNDKVSANKIMAPHKENITERAQQFKRVLVLQDTTELNYSGQKEKQGV  103
             WSETKAAY CFSNDKVSANKIM+PHKENITERAQQFKRVLVLQDTTELNYSGQKEKQGV
Sbjct  59   PWSETKAAYRCFSNDKVSANKIMTPHKENITERAQQFKRVLVLQDTTELNYSGQKEKQGV  118

Query  104  GHKKHKDERNLFLHPQLVISESGVCLGVYDDYQWFRDELKTSKNTRQEICNDLLHKKHVS  163
            G KKHKDERNLFLHPQLVISESGVCLGVYDDYQWFRDELKTSKNTRQEICNDLLHKKHVS
Sbjct  119  GPKKHKDERNLFLHPQLVISESGVCLGVYDDYQWFRDELKTSKNTRQEICNDLLHKKHVS  178

Query  164  EKETWRWVEGYNKATELARQCPDTHVLSISDREGDFYDLFERAEQTPGIKADWLVRMKFN  223
            EKETWRWVEGYNKATELARQCPDTHVLSISDREGDFYDLFERA QTPGIKADWLVRMKFN
Sbjct  179  EKETWRWVEGYNKATELARQCPDTHVLSISDREGDFYDLFERAAQTPGIKADWLVRMKFN  238

Query  224  NRATLNINGKRDHRLLHERIMEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLI  283
            NRATLNINGKRDHRLLHERIMEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLI
Sbjct  239  NRATLNINGKRDHRLLHERIMEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLI  298

Query  284  YSSKVMIISLFDSTVMPDKYRHNGK  308
            YSSKVMIISLFDSTVMPDKYRHNGK
Sbjct  299  YSSKVMIISLFDSTVMPDKYRHNGK  323