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Homologs of SP_1040 gene of NC_003028_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SP_1040
( NP_345515.1 )

resolvase family site-specific recombinase

NC_003028
(Streptococcus pneumoniae TIGR4)

0.0

100

2) SP70585_1119
( YP_002740372.1 )

site-specific recombinase-like protein

NC_012468
(Streptococcus pneumoniae 70585)

0.0

3) SPD_0921
( YP_816399.1 )

site-specific recombinase, resolvase family protein

NC_008533
(Streptococcus pneumoniae D39)

0.0

4) ccrB
( NP_358536.1 )

hypothetical protein

NC_003098
(Streptococcus pneumoniae R6)

0.0

5) SPCG_1020
( YP_001835737.1 )

resolvase family site-specific recombinase

NC_010582
(Streptococcus pneumoniae CGSP14)

0.0

6) SPAP_1155
( YP_003876746.1 )

site-specific recombinase

NC_014494
(Streptococcus pneumoniae AP200)

0.0

7) SZO_12700
( YP_002744787.1 )

site-specific recombinase

NC_012470
(Streptococcus equi H70)

0.0

8) SPG_0966
( YP_002037676.1 )

resolvase family protein site-specific recombinase

NC_011072
(Streptococcus pneumoniae G54)

0.0

9) SPH_1141
( YP_001694482.1 )

hypothetical protein

NC_010380
(Streptococcus pneumoniae Hungary19A-6)

0.0

10) SCI_1271
( YP_008499196.1 )

site-specific DNA recombinase

NC_022238
(Streptococcus constellatus C1050)

0.0

11) SCRE_1212
( YP_008495606.1 )

site-specific DNA recombinase

NC_022236
(Streptococcus constellatus C232)

0.0

12) SCR2_1212
( YP_008511368.1 )

site-specific DNA recombinase

NC_022245
(Streptococcus constellatus C818)

0.0

13) M28_Spy1079
( YP_280547.1 )

site-specific recombinase

NC_007296
(Streptococcus pyogenes MGAS6180)

0.0

14) SANR_1839
( YP_008501509.1 )

site-specific DNA recombinase

NC_022239
(Streptococcus anginosus C238)

0.0

15) Apre_1795
( YP_003142372.1 )

resolvase domain-containing protein

NC_013164
(Anaerococcus prevotii DSM 20548)

0.0

16) INV104_09040
( YP_006062565.1 )

putative site-specific recombinase (pseudogene)

NC_017591
(Streptococcus pneumoniae INV104)

0.0

17) SPNINV200_09600
( YP_006066263.1 )

putative site-specific recombinase (pseudogene)

NC_017593
(Streptococcus pneumoniae INV200)

0.0

18) SP670_1284
( YP_003879445.1 )

site-specific recombinase/resolvase

NC_014498
(Streptococcus pneumoniae 670-6B)

0.0

19) ccrB
( YP_006904878.1 )

hypothetical protein

NC_019042
(Streptococcus dysgalactiae AC-2713)

0.0

20) SDE12394_07055
( YP_006013445.1 )

site-specific recombinase

NC_017567
(Streptococcus dysgalactiae ATCC 12394)

0.0

21) GGS_1218
( YP_006859853.1 )

putative site-specific recombinase

NC_018712
(Streptococcus dysgalactiae RE378)

0.0

22) SPNA45_01339
( YP_006701756.1 )

site-specific recombinase (pseudogene)

NC_018594
(Streptococcus pneumoniae A45)

0.0

23) SII_0995
( YP_008497166.1 )

site-specific DNA recombinase

NC_022237
(Streptococcus intermedius C270)

0.0

24) FP2_18180
( YP_007837529.1 )

Site-specific recombinases, DNA invertase Pin homologs

NC_021042
(Faecalibacterium prausnitzii L2/6)

0.0

25) CLS_31010
( YP_007850369.1 )

Site-specific recombinases, DNA invertase Pin homologs

NC_021047
(Clostridium saccharolyticum K10)

0.0

26) FPR_23970
( YP_007800951.1 )

Site-specific recombinases, DNA invertase Pin homologs

NC_021020
(Faecalibacterium prausnitzii SL3/3)

0.0

27) MYY_1101
( YP_006253294.1 )

site-specific recombinase, resolvase family protein

NC_017769
(Streptococcus pneumoniae ST556)

0.0

28) HMPREF0837_11434
( YP_003724876.1 )

resolvase family site-specific recombinase

NC_014251
(Streptococcus pneumoniae TCH8431/19A)

0.0

29) ROI_14610
( YP_007831638.1 )

Site-specific recombinases, DNA invertase Pin homologs

NC_021040
(Roseburia intestinalis M50/1)

3e-141

30) CL2_28980
( YP_007790694.1 )

Site-specific recombinases, DNA invertase Pin homologs

NC_021016
(butyrate-producing bacterium SSC/2)

3e-141

31) RHOM_13305
( YP_004839699.1 )

site-specific recombinase

NC_015977
(Roseburia hominis A2-183)

9e-137

32) CK5_04130
( YP_007803997.1 )

Site-specific recombinases, DNA invertase Pin homologs

NC_021022
([Ruminococcus] obeum A2-162)

3e-135

33) RTO_13170
( YP_007786457.1 )

Site-specific recombinases, DNA invertase Pin homologs

NC_021015
([Ruminococcus] torques L2-14)

4e-135

34) CCU_17030
( YP_007796551.1 )

Site-specific recombinases, DNA invertase Pin homologs

NC_021018
(Coprococcus sp. ART55/1)

3e-128

35) FPR_13150
( YP_007800010.1 )

Site-specific recombinases, DNA invertase Pin homologs

NC_021020
(Faecalibacterium prausnitzii SL3/3)

3e-128

36) ES1_00510
( YP_007838802.1 )

Site-specific recombinases, DNA invertase Pin homologs

NC_021043
(Eubacterium siraeum V10Sc8a)

4e-126

37) CK3_15360
( YP_007823694.1 )

Site-specific recombinases, DNA invertase Pin homologs

NC_021035
(butyrate-producing bacterium SS3/4)

2e-123

38) Sinf_0428
( YP_005203253.1 )

Phage integrase (Site-specific recombinase)

NC_016826
(Streptococcus infantarius CJ18)

3e-122

39) RBR_00340
( YP_007780280.1 )

Site-specific recombinases, DNA invertase Pin homologs

NC_021013
(Ruminococcus bromii L2-63)

1e-121

40) ROI_15030
( YP_007831672.1 )

Site-specific recombinases, DNA invertase Pin homologs

NC_021040
(Roseburia intestinalis M50/1)

2e-121

41) EC1_10040
( YP_007798146.1 )

Site-specific recombinases, DNA invertase Pin homologs

NC_021019
(Eubacterium cylindroides T2-87)

9e-121

42) RHOM_10770
( YP_004839195.1 )

site-specific recombinase

NC_015977
(Roseburia hominis A2-183)

3e-120

43) RTO_12950
( YP_007786436.1 )

Site-specific recombinases, DNA invertase Pin homologs

NC_021015
([Ruminococcus] torques L2-14)

5e-120

44) RO1_43180
( YP_007780250.1 )

Site-specific recombinases, DNA invertase Pin homologs

NC_021012
(Roseburia intestinalis XB6B4)

3e-116

45) DCF50_p74
( YP_006912065.1 )

Phage integrase (Site-specific recombinase)

NC_018867
(Dehalobacter sp. CF)

1e-109

• Sequence Alignments

1) SP_1040 in NC_003028


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  859 bits (3253),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 559/559 (100%), Positives = 559/559 (100%), Gaps = 0/559 (0%)

Query  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60
            MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120
            IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180
            DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240
            AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300
            IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIkkkkdgtkykdfyyygCNHRQMIRGNKCTFS  360
            KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420
            KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480
            FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540
            NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  541  IGLDNDEQVECVSLLEKRS  559
            IGLDNDEQVECVSLLEKRS
Sbjct  541  IGLDNDEQVECVSLLEKRS  559

2) SP70585_1119 in NC_012468


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  852 bits (3225),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 554/559 (99%), Positives = 558/559 (99%), Gaps = 0/559 (0%)

Query  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGR  60
            MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120
            IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAREGKWNGGFAPYGYKLEDGKLFINEEE  180
            DAGKLMISVLSAVAEIERENISIQTMEGRIQKA EGKWNGGFAPYGYKLEDGKLFINEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240
            AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300
            IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIkkkkdgtkykdfyyygCNHRQMIRGHKCTFS  360
            KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRG+KCTFS
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420
            KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGD  480
            FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDK+DELESSLIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540
            NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  541  IDLDNDEQVECVSLLEKRS  559
            I+LDNDEQVECVSLLEKRS
Sbjct  541  IGLDNDEQVECVSLLEKRS  559

3) SPD_0921 in NC_008533


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  851 bits (3221),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 553/559 (99%), Positives = 557/559 (99%), Gaps = 0/559 (0%)

Query  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGR  60
            MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120
            IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DAGKLMISVLSAVAEIERENIRIQTMEGRIQKAREGKWNGGFAPYGYKLEDGKLFINEEE  180
            DAGKLMISVLSAVAEIERENI IQTMEGRIQKA EGKWNGGFAPYGYKLEDGKLFINEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240
            AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300
            IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIkkkkdgtkykdfyyygCNHRQMIRGHKCTFS  360
            KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRG+KCTFS
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420
            KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGD  480
            FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDK+DELESSLIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540
            NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  541  IDLDNDEQVECVSLLEKRS  559
            I+LDNDEQVECVSLLEKRS
Sbjct  541  IGLDNDEQVECVSLLEKRS  559

4) ccrB in NC_003098


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  851 bits (3221),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 553/559 (99%), Positives = 557/559 (99%), Gaps = 0/559 (0%)

Query  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGR  60
            MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120
            IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DAGKLMISVLSAVAEIERENIRIQTMEGRIQKAREGKWNGGFAPYGYKLEDGKLFINEEE  180
            DAGKLMISVLSAVAEIERENI IQTMEGRIQKA EGKWNGGFAPYGYKLEDGKLFINEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240
            AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300
            IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIkkkkdgtkykdfyyygCNHRQMIRGHKCTFS  360
            KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRG+KCTFS
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420
            KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGD  480
            FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDK+DELESSLIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540
            NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  541  IDLDNDEQVECVSLLEKRS  559
            I+LDNDEQVECVSLLEKRS
Sbjct  541  IGLDNDEQVECVSLLEKRS  559

5) SPCG_1020 in NC_010582


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  849 bits (3213),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 552/559 (99%), Positives = 558/559 (99%), Gaps = 0/559 (0%)

Query  1    MSKEKIKVYLYTRVSTSIKIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGR  60
            MSKEKIKVYLYTRVSTSI+IEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYGVNLICVEDGIDSSK  120
            IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTL+IMQDYGVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAREGKWNGGFAPYGYKLEDGKLFINEEE  180
            DAGKLMISVLSAVAEIERENISIQTMEGRIQKA EGKWNGGFAPYGYKLEDGKLFINEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240
            AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300
            IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIkkkkdgtkykdfyyygCNHRQMIRGHKCTFS  360
            KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRG+KCTFS
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420
            KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGD  480
            FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDK+DELESSLIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540
            NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  541  IDLDNDEQVECVSLLEKRS  559
            I+LDNDEQVECVSLLEKRS
Sbjct  541  IGLDNDEQVECVSLLEKRS  559

6) SPAP_1155 in NC_014494


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  845 bits (3201),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 551/559 (99%), Positives = 556/559 (99%), Gaps = 0/559 (0%)

Query  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGR  60
            MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYGVNLICVEDGIDSSK  120
            IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTL+IMQDYGVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DAGKLMISVLSAVAEIERENIRIQTMEGRIQKAREGKWNGGFAPYGYKLEDGKLFINEEE  180
            DAGKLMISVLSAVAEIERENI IQTMEGRIQKA EGKWNGGFAPYGYKLEDGKLFINEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240
            AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300
            IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIkkkkdgtkykdfyyygykHRQMIRGHKCTFS  360
            KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYG +HRQMIRG+KCTFS
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420
            KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGD  480
            FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDK+DELESSLIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540
            NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  541  IGLDNDEQVECVSLLEKRS  559
            IGLDNDEQVECVSLLEKRS
Sbjct  541  IGLDNDEQVECVSLLEKRS  559

7) SZO_12700 in NC_012470


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  842 bits (3190),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 519/557 (94%), Positives = 550/557 (99%), Gaps = 0/557 (0%)

Query  1    MSKEKIKVYLYTRVSTSIQIDGYSLEAQKSRMKAFALYNDYEIVGEYEDAGKSGKSIEGR  60
            MSKEKIKVYLYTRVSTSIQI+GYSLEAQKSRMKAFA+YNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQTMQDFGVNLICVEDGIDSSK  120
            IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTL+ MQD+GVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DAGKLMISVLSAVAEIERENIRVQTMEGRIQKAREGKWNGGFAPYGYQLVDGKLFINEEE  180
            DAGKLMISVLSAVAEIERENI +QTMEGRIQKA EGKWNGGFAPYGY+L DGKLFINEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AVAIRTIFDQYVNTTIGANGLSKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240
            AVAIRTIFDQYVNTTIGANG+SKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLIAEGIHEAIISDELWQAAQVKLKSQAKKYEHVN  300
            IAFGRRTLEKVHGTRNEYKQVEQDEYLI+EGIHEAI+SDE+WQAAQVKLKSQAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  KGKDIRTHLLSGIVKCPVCGVGMFGNKCIKKRKDGTKYKDFYYYGCKHRQMMRGHKCTFS  360
            KGKD RTHLLSGIVKCP+CGVGMFGNKCIKK+KDGTKYKDFYYYGC+HRQM+RG+KCTFS
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  361  KQIREELLDDAVAEVIIKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420
            KQIREELLDDAVAEVI+KIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  421  YKLIEEIDNLDADDKHYKRRKQDLDDRLYRMYDKIEELESFLIDAKAKKQTIEAEKLTGD  480
            +KLIEEIDNLD +DKHYKRRKQDLDDRLYRMYDK++ELES LIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  481  NIYKVLIYFDKLYKVMNDVERRQLITALISEIQIYEEKQPNGQWLKSITFKLPIIDEDLN  540
            NIYKVLIYFDKLYKVMNDVERRQLI+ALISEIQ+YEEKQ+NGQWLKSITFKLPII+E+LN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  541  IGLDNDEQVECIALIQR  557
            IGLDNDEQVEC++L+++
Sbjct  541  IGLDNDEQVECVSLLEK  557

8) SPG_0966 in NC_011072


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  839 bits (3176),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 548/559 (99%), Positives = 554/559 (99%), Gaps = 0/559 (0%)

Query  1    MSKEKIKVYLYTRXSTSIQXEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGR  60
            MSKEKIKVYLYTR STSIQ EGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYGVNLICVEDGIDSSK  120
            IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTL+IMQDYGVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DAGKLMISVLSAVAEIERENIRIQTMEGRIQKAREGKWNGGFAPYGYKLEDGKLFINEEE  180
            DAGKLMISVLSAVAEIERENI IQTMEGRIQKA EGKWNGGFAPYGYKLEDGKLFINEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240
            AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300
            IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIkkkkdgtkykdfyyygykHRQMIRGHKCTFS  360
            KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYG +HRQMIRG+KCTFS
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  361  KQIREEFLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420
            KQIREE+LDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGD  480
            FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDK+DELESSLIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540
            NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  541  IGLDNDEQVECVSLLEKRS  559
            IGLDNDEQVECVSLLEKRS
Sbjct  541  IGLDNDEQVECVSLLEKRS  559

9) SPH_1141 in NC_010380


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  836 bits (3166),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 546/559 (98%), Positives = 553/559 (99%), Gaps = 0/559 (0%)

Query  1    MSKEKIKVYLYTRVSTSIQIEGYSLGAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGR  60
            MSKEKIKVYLYTRVSTSIQIEGYSL AQKSRMKAFAIYNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYGVNLICVEDGIDSSK  120
            IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTL+IMQDYGVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DAGKLMISVLSAVAEIERENIRIQTMEGCIQKAREGKWNGGFAPYGYKLEDGKLFINEEE  180
            DAGKLMISVLSAVAEIERENI IQTMEG IQKA EGKWNGGFAPYGYKLEDGKLFINEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240
            AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYERVN  300
            IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYE+VN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIkkkkdgtkykdfyyygCKHRQMIRGHECTFS  360
            KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGC+HRQMIRG+ CTFS
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420
            KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLCRMYDKIDELESSLIDAKAKKQTIEAEKLTGD  480
            FKLIEEIDNLDVEDKHYKRRKQDLDDRL RMYDK+DELESSLIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  481  NIYKVLIYFDKLYKVMNDVEHRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540
            NIYKVLIYFDKLYKVMNDVE+RQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  541  IGLDNDEQVECVSLLEKRS  559
            IGLDNDEQVECVSLLEKRS
Sbjct  541  IGLDNDEQVECVSLLEKRS  559

10) SCI_1271 in NC_022238


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  817 bits (3093),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 512/555 (93%), Positives = 545/555 (99%), Gaps = 0/555 (0%)

Query  85   MSKEKIKVYLYTRVSTSIQIDGYSLEAQKTRMKAFALYNDYEIVGEYEDAGKSGKSIEGR  144
            MSKEKIKVYLYTRVSTSIQI+GYSLEAQK+RMKAFA+YNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  145  VQFTRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQTMQDFGVNLICVEDGIDSSK  204
            +QF RMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTL+ MQD+GVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  205  DAGKLMISVLSAVAEIERENIRVQTMEGRIQKAREGKWNGGFAPYGYQLVDGKLFINEEE  264
            DAGKLMISVLSAVAEIERENI +QTMEGRIQKA EGKWNGGFAPYGY+L DGKLFINEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  265  AVAIRTIFEQYVNTTIGANGLSKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYKGK  324
            AVAIRTIF+QYVNTTIGANG+SKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVY+GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  325  IAFGRRTLEKVHGTRNEYKQVEQDEYLIAEGIHEAIISDELWQAAQVKLKSQAKKYEHVN  384
            IAFGRRTLEKVHGTRNEYKQVEQDEYLI+EGIHEAI+SDE+WQAAQVKLKSQAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  385  KGKDVRTHLLSGIVKCPICGVGMFGNKCIkkkkdgtkykdfyyygCKHRQMIRGHKCTFS  444
            KGKD RTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGC+HRQMIRG+KCTFS
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  445  KQIREELLDDAVAELIIKIVSNPKFASIMQEKINMKVDTSEIEKEIDNYQKELRKSHSIK  504
            KQIREELLDDAVAE+I+KIVSNPKFAS+MQEKINMKVDTSEIEKEIDNYQKELRKSHS K
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  505  FKLIEEIDNLNVDDKHYKRRKQDLDDRLYRMYDKIEELESLLIDAKAKKQTIEAEKLTGD  564
            FKLIEEIDNL+V+DKHYKRRKQDLDDRLYRMYDK++ELES LIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  565  NIYKVLIYFDKLYNVMNDVERRQLITALISEIQIYEEKQPNGQWLKSITFKLPVIDEDLN  624
            NIYKVLIYFDKLY+VMNDVERRQLI+ALISEIQ+YEEKQ+NGQWLKSITFKLP+I+E+LN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  625  ISLDNDKQVECVVLM  639
            I+LDND QVECV L+
Sbjct  541  IGLDNDEQVECVSLL  555

11) SCRE_1212 in NC_022236


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  817 bits (3093),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 512/555 (93%), Positives = 545/555 (99%), Gaps = 0/555 (0%)

Query  85   MSKEKIKVYLYTRVSTSIQIDGYSLEAQKTRMKAFALYNDYEIVGEYEDAGKSGKSIEGR  144
            MSKEKIKVYLYTRVSTSIQI+GYSLEAQK+RMKAFA+YNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  145  VQFTRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQTMQDFGVNLICVEDGIDSSK  204
            +QF RMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTL+ MQD+GVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  205  DAGKLMISVLSAVAEIERENIRVQTMEGRIQKAREGKWNGGFAPYGYQLVDGKLFINEEE  264
            DAGKLMISVLSAVAEIERENI +QTMEGRIQKA EGKWNGGFAPYGY+L DGKLFINEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  265  AVAIRTIFEQYVNTTIGANGLSKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYKGK  324
            AVAIRTIF+QYVNTTIGANG+SKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVY+GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  325  IAFGRRTLEKVHGTRNEYKQVEQDEYLIAEGIHEAIISDELWQAAQVKLKSQAKKYEHVN  384
            IAFGRRTLEKVHGTRNEYKQVEQDEYLI+EGIHEAI+SDE+WQAAQVKLKSQAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  385  KGKDVRTHLLSGIVKCPICGVGMFGNKCIkkkkdgtkykdfyyygCKHRQMIRGHKCTFS  444
            KGKD RTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGC+HRQMIRG+KCTFS
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  445  KQIREELLDDAVAELIIKIVSNPKFASIMQEKINMKVDTSEIEKEIDNYQKELRKSHSIK  504
            KQIREELLDDAVAE+I+KIVSNPKFAS+MQEKINMKVDTSEIEKEIDNYQKELRKSHS K
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  505  FKLIEEIDNLNVDDKHYKRRKQDLDDRLYRMYDKIEELESLLIDAKAKKQTIEAEKLTGD  564
            FKLIEEIDNL+V+DKHYKRRKQDLDDRLYRMYDK++ELES LIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  565  NIYKVLIYFDKLYNVMNDVERRQLITALISEIQIYEEKQPNGQWLKSITFKLPVIDEDLN  624
            NIYKVLIYFDKLY+VMNDVERRQLI+ALISEIQ+YEEKQ+NGQWLKSITFKLP+I+E+LN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  625  ISLDNDKQVECVVLM  639
            I+LDND QVECV L+
Sbjct  541  IGLDNDEQVECVSLL  555

12) SCR2_1212 in NC_022245


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  817 bits (3093),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 512/555 (93%), Positives = 545/555 (99%), Gaps = 0/555 (0%)

Query  85   MSKEKIKVYLYTRVSTSIQIDGYSLEAQKTRMKAFALYNDYEIVGEYEDAGKSGKSIEGR  144
            MSKEKIKVYLYTRVSTSIQI+GYSLEAQK+RMKAFA+YNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  145  VQFTRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQTMQDFGVNLICVEDGIDSSK  204
            +QF RMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTL+ MQD+GVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  205  DAGKLMISVLSAVAEIERENIRVQTMEGRIQKAREGKWNGGFAPYGYQLVDGKLFINEEE  264
            DAGKLMISVLSAVAEIERENI +QTMEGRIQKA EGKWNGGFAPYGY+L DGKLFINEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  265  AVAIRTIFEQYVNTTIGANGLSKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYKGK  324
            AVAIRTIF+QYVNTTIGANG+SKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVY+GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  325  IAFGRRTLEKVHGTRNEYKQVEQDEYLIAEGIHEAIISDELWQAAQVKLKSQAKKYEHVN  384
            IAFGRRTLEKVHGTRNEYKQVEQDEYLI+EGIHEAI+SDE+WQAAQVKLKSQAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  385  KGKDVRTHLLSGIVKCPICGVGMFGNKCIkkkkdgtkykdfyyygCKHRQMIRGHKCTFS  444
            KGKD RTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGC+HRQMIRG+KCTFS
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  445  KQIREELLDDAVAELIIKIVSNPKFASIMQEKINMKVDTSEIEKEIDNYQKELRKSHSIK  504
            KQIREELLDDAVAE+I+KIVSNPKFAS+MQEKINMKVDTSEIEKEIDNYQKELRKSHS K
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  505  FKLIEEIDNLNVDDKHYKRRKQDLDDRLYRMYDKIEELESLLIDAKAKKQTIEAEKLTGD  564
            FKLIEEIDNL+V+DKHYKRRKQDLDDRLYRMYDK++ELES LIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  565  NIYKVLIYFDKLYNVMNDVERRQLITALISEIQIYEEKQPNGQWLKSITFKLPVIDEDLN  624
            NIYKVLIYFDKLY+VMNDVERRQLI+ALISEIQ+YEEKQ+NGQWLKSITFKLP+I+E+LN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  625  ISLDNDKQVECVVLM  639
            I+LDND QVECV L+
Sbjct  541  IGLDNDEQVECVSLL  555

13) M28_Spy1079 in NC_007296


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  806 bits (3050),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 539/559 (97%), Positives = 553/559 (99%), Gaps = 0/559 (0%)

Query  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGR  60
            MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   KQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYGVNLICVEDGIDSSK  120
             QFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTL+IMQDYGVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DAGKLMISVLSAVAEIERENIRIQTMEGRIQKAREGKWNGGFAPYGYKLEDGKLFINEEE  180
            DAGKLMISVLSAVAEIERENI IQTMEGRIQKA EGKWNGGFAPYGYKLEDGKLFINEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AVAIRTIFDQYVNTTIGANGLSKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240
            AVAIRTIFDQYVNTTIGANG+SKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300
            IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  KGKDTRTHLLSGIVKCPICGAGMFGNkctkkkkdgtkykdfyyygCKHRQMIRGHKCTFR  360
            KGKDTRTHLLSGIVKCPICG GMFGNKC KKKKDGTKYKDFYYYGC+HRQMIRG+KCTF 
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420
            KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  421  FKIIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGD  480
            FK+IEEIDNLDVEDKHYKRRKQDLDDRLYRMYDK+DELESSLIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  481  NIYKVLIYFDKLYKVMNDVERRQLITALISEIQVYEEKQPNGQWLKSITFKlpiidddln  540
            NIYKVLIYFDKLYKVMNDVERRQLI+ALISEIQVYEEKQ+NGQWLKSITFKLPII+++LN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  541  isldnnEQVECVSLLEKRS  559
            I+LDN+EQVECVSLLEKRS
Sbjct  541  IGLDNDEQVECVSLLEKRS  559

14) SANR_1839 in NC_022239


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  806 bits (3051),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 507/550 (93%), Positives = 538/550 (98%), Gaps = 0/550 (0%)

Query  1    MSKEKIKVYLYTRVSTSIQIDGYSLEAQKTRMKAFALYNDYEIVGEYEDAGKSGKSIEGR  60
            MSKEKIKVYLYTRVSTSIQI+GYSLEAQK+RMKAFA+YNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   AQFTRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQTMQDFGVNLICVEDGIDSSK  120
             QF RMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTL+ MQD+GVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DAGKLMISVLSAVAEIERENIRVQTMEGRIQKAREGKWNGGFAPYGYQLVDGKLFINEEE  180
            DAGKLMISVLSAVAEIERENI +QTMEGRIQKA EGKWNGGFAPYGY+L DGKLFINEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AVAIRTIFEQYVNTTIGANGLSKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYKGK  240
            AVAIRTIF+QYVNTTIGANG+SKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVY+GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLIAEGIHEAIISDELWQAAQVKLKSQAKKYEHVN  300
            IAFGRRTLEKVHGTRNEYKQVEQDEYLI+EGIHEAI+SDE+WQAAQVKLKSQAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  KGKDVRTHLLSGIVKCPICGVGMFGNKCIkkkkdgtkykdfyyygCKHRQMIRGHKCTFS  360
            KGKD RTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGC+HRQMIRG+KCTFS
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  361  KQIREELLDDAVAELIIKIVSTPKFASIMQEKINMKVDTSEIEKEIDNYQKELRKSHSIK  420
            KQIREELLDDAVAE+I+KIVS PKFAS+MQEKINMKVDTSEIEKEIDNYQKELRKSHS K
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  421  FKLIEEIDNLNVDDKHYKRRKQDLDDRLYRMYDKIEELESLLIDAKAKKQTIEAEKLTGD  480
            FKLIEEIDNL+V+DKHYKRRKQDLDDRLYRMYDK++ELES LIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  481  NIYKVLIYFDKLYNVMNDVERRQLITALISEIQIYEEKQLNGQWLKSITFKLPVIDEDLN  540
            NIYKVLIYFDKLY+VMNDVERRQLI+ALISEIQ+YEEKQ NGQWLKSITFKLP+I+E+LN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  541  ISLDNDKQVD  550
            I+LDND QV+
Sbjct  541  IGLDNDEQVE  550

15) Apre_1795 in NC_013164


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  804 bits (3043),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 535/557 (97%), Positives = 551/557 (99%), Gaps = 0/557 (0%)

Query  1    MLKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGR  60
            M KEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   KQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYGVNLICVEDGIDSSK  120
             QFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTL+IMQDYGVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DAGKLMISVLSAVAEIERENIRIQTMEGRIQKAREGKWNGGFAPYGYKLEDGKLFINEEE  180
            DAGKLMISVLSAVAEIERENI IQTMEGRIQKA EGKWNGGFAPYGYKLEDGKLFINEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AVAIRTIFDQYVNTTIGANGLSKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240
            AVAIRTIFDQYVNTTIGANG+SKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300
            IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  KGKDTRTHLLSGIVKCPICGVGMFGNkctkkkkdgtkykdfyyygCKHRQMIRGHKCTFS  360
            KGKDTRTHLLSGIVKCPICGVGMFGNKC KKKKDGTKYKDFYYYGC+HRQMIRG+KCTFS
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420
            KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGD  480
            FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDK+DELESSLIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  481  NIYKVLIYFDKLYKVMNDVERRQLITALISEIQVYEEKQPNGQWLKSITFKLPiidddln  540
            NIYKVLIYFDKLYKVMNDVERRQLI+ALISEIQVYEEKQ+NGQWLKSITFKLPII+++LN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  541  isldndEQVEAIALIQK  557
            I+LDNDEQVE ++L++K
Sbjct  541  IGLDNDEQVECVSLLEK  557

16) INV104_09040 in NC_017591


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  803 bits (3041),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 522/528 (99%), Positives = 526/528 (99%), Gaps = 0/528 (0%)

Query  1    MKAFAIYNDYEIVGEYEDAGKSGKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARN  60
            MKAFAIYNDYEIVGEYEDAGKS+KSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARN
Sbjct  32   MKAFAIYNDYEIVGEYEDAGKSDKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARN  91

Query  61   AADVLSTLQIMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIERENIRIQTMEGRIQ  120
            AADVLSTL+IMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIERENI IQTMEGRIQ
Sbjct  92   AADVLSTLHIMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIERENISIQTMEGRIQ  151

Query  121  KAREGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIGANGISKYLENHGIR  180
            KA EGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIGANGISKYLENHGIR
Sbjct  152  KAGEGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIGANGISKYLENHGIR  211

Query  181  KIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVHGTRNEYKQVEQDEYLISEG  240
            KIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVHGTRNEYKQVEQDEYLISEG
Sbjct  212  KIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVHGTRNEYKQVEQDEYLISEG  271

Query  241  IHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCPICGVGMFGNKCIkk  300
            IHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCPICGVGMFGNKCIKK
Sbjct  272  IHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCPICGVGMFGNKCIKK  331

Query  301  kkdgtkykdfyyygCNHRQMIRGHKCTFSKQIREELLDDAVAEVIVKIVSNPKFASMMQE  360
            KKDGTKYKDFYYYGCNHRQMIRG+KCTFSKQIREELLDDAVAEVIVKIVSNPKFASMMQE
Sbjct  332  KKDGTKYKDFYYYGCNHRQMIRGNKCTFSKQIREELLDDAVAEVIVKIVSNPKFASMMQE  391

Query  361  KINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRLYRM  420
            KINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRLYRM
Sbjct  392  KINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRLYRM  451

Query  421  YDKVDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKLYKVMNDVERRQLISALISE  480
            YDK+DELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKLYKVMNDVERRQLISALISE
Sbjct  452  YDKLDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKLYKVMNDVERRQLISALISE  511

Query  481  IQVYEEKQSNGQWLKSITFKLPIIEENLNIGLDNDEQVECVSLLEKRS  528
            IQVYEEKQSNGQWLKSITFKLPIIEENLNIGLDNDEQVECVSLLEKRS
Sbjct  512  IQVYEEKQSNGQWLKSITFKLPIIEENLNIGLDNDEQVECVSLLEKRS  559

17) SPNINV200_09600 in NC_017593


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  803 bits (3038),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 522/528 (99%), Positives = 527/528 (99%), Gaps = 0/528 (0%)

Query  1    MKAFAIYNDYEIVGEYEDAGKSGKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARN  60
            MKAFAIYNDYEIVGEYEDAGKS+KSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARN
Sbjct  32   MKAFAIYNDYEIVGEYEDAGKSDKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARN  91

Query  61   AADVLSTLQIMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIERENISIQTMEGRIQ  120
            AADVLSTL+IMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIERENISIQTMEGRIQ
Sbjct  92   AADVLSTLHIMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIERENISIQTMEGRIQ  151

Query  121  KAREGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIGANGISKYLENHGIR  180
            KA EGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIGANGISKYLENHGIR
Sbjct  152  KAGEGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIGANGISKYLENHGIR  211

Query  181  KIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVHGTRNEYKQVEQDEYLISEG  240
            KIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVHGTRNEYKQVEQDEYLISEG
Sbjct  212  KIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVHGTRNEYKQVEQDEYLISEG  271

Query  241  IHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCPICGVGMFGNKCIkk  300
            IHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCPICGVGMFGNKCIKK
Sbjct  272  IHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCPICGVGMFGNKCIKK  331

Query  301  kkdgtkykdfyyygCNHRQMIRGHKCTFSKQIREELLDDAVAEVIVKIVSNPKFASMMQE  360
            KKDGTKYKDFYYYGCNHRQMIRG+KCTFSKQIREELLDDAVAEVIVKIVSNPKFASMMQE
Sbjct  332  KKDGTKYKDFYYYGCNHRQMIRGNKCTFSKQIREELLDDAVAEVIVKIVSNPKFASMMQE  391

Query  361  KINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRLYRM  420
            KINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRLYRM
Sbjct  392  KINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRLYRM  451

Query  421  YDKIDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKLYKVMNDVERRQLISALISE  480
            YDK+DELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKLYKVMNDVERRQLISALISE
Sbjct  452  YDKLDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKLYKVMNDVERRQLISALISE  511

Query  481  IQVYEEKQSNGQWLKSITFKLPIIEENLNIDLDNDEQVECVSLLEKRS  528
            IQVYEEKQSNGQWLKSITFKLPIIEENLNI+LDNDEQVECVSLLEKRS
Sbjct  512  IQVYEEKQSNGQWLKSITFKLPIIEENLNIGLDNDEQVECVSLLEKRS  559

18) SP670_1284 in NC_014498


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  802 bits (3037),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 521/528 (99%), Positives = 526/528 (99%), Gaps = 0/528 (0%)

Query  1    MKAFAIYNDYEIVGEYEDAGKSGKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARN  60
            MKAFAIYNDYEIVGEYEDAGKS+KSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARN
Sbjct  32   MKAFAIYNDYEIVGEYEDAGKSDKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARN  91

Query  61   AADVLSTLQIMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIERENIRIQTMEGRIQ  120
            AADVLSTL+IMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIERENI IQTMEGRIQ
Sbjct  92   AADVLSTLHIMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIERENISIQTMEGRIQ  151

Query  121  KAREGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIGANGISKYLENHGIR  180
            KA EGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIGANGISKYLENHGIR
Sbjct  152  KAGEGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIGANGISKYLENHGIR  211

Query  181  KIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVHGTRNEYKQVEQDEYLISEG  240
            KIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVHGTRNEYKQVEQDEYLISEG
Sbjct  212  KIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVHGTRNEYKQVEQDEYLISEG  271

Query  241  IHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCPICGVGMFGNKCIkk  300
            IHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCPICGVGMFGNKCIKK
Sbjct  272  IHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCPICGVGMFGNKCIKK  331

Query  301  kkdgtkykdfyyygCKHRQMIRGHKCTFSKQIREELLDDAVAEVIVKIVSNPKFASMMQE  360
            KKDGTKYKDFYYYGC+HRQMIRG+KCTFSKQIREELLDDAVAEVIVKIVSNPKFASMMQE
Sbjct  332  KKDGTKYKDFYYYGCNHRQMIRGNKCTFSKQIREELLDDAVAEVIVKIVSNPKFASMMQE  391

Query  361  KINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRLYRM  420
            KINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRLYRM
Sbjct  392  KINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRLYRM  451

Query  421  YDKIDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKLYKVMNDVERRQLISALISE  480
            YDK+DELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKLYKVMNDVERRQLISALISE
Sbjct  452  YDKLDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKLYKVMNDVERRQLISALISE  511

Query  481  IQVYEEKQSNGQWLKSITFKLPIIEENLNIGLDNDEQVECVSLLEKRS  528
            IQVYEEKQSNGQWLKSITFKLPIIEENLNIGLDNDEQVECVSLLEKRS
Sbjct  512  IQVYEEKQSNGQWLKSITFKLPIIEENLNIGLDNDEQVECVSLLEKRS  559

19) ccrB in NC_019042


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  801 bits (3032),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 503/557 (91%), Positives = 542/557 (98%), Gaps = 0/557 (0%)

Query  1    MSKEKIKVYLYTRVSTSIQIDGYSLEAQKSRMKAFALYNDYEIVGEYEDAGKSGKSIEGR  60
            MSKEKIKVYLYTRVSTSIQI+GYSLEAQKSRMKAFA+YNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   IQFTRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQTMQDFGVNLICVEDGIDSSK  120
            IQF RMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTL+ MQD+GVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DAGKLMISVLSAVAEIERENIRVQTMEGRIQKAREGKWNGGFAPYGYQLIDGKLLINEEE  180
            DAGKLMISVLSAVAEIERENI +QTMEGRIQKA EGKWNGGFAPYGY+L DGKL+INEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AIAIRTIFDQYVNTSIGANGLSKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240
            A+AIRTIFDQYVNT+IGANG+SKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAFGRRTLEKVHGTRNEYRQVDQDDYIVAEGIHEAIIPDELWqaaqvklkaqakkYEHVN  300
            IAFGRRTLEKVHGTRNEY+QV+QD+Y+++EGIHEAI++DE+WQAAQVKLK+QAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  KGKNMRTHLLSGIVKCPICGAGMFGNKSIKYKKDGTKYKDFYYYGCKHRLMNRGHKCTYN  360
            KGK+ RTHLLSGIVKCPICG GMFGNK IK KKDGTKYKDFYYYGC+HR M RG+KCT++
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  361  KQIREELLDDAVAEVIIKLVSNPKFASMMQEKINMKVDTSAIENEIDNYQKELRKSHSTK  420
            KQIREELLDDAVAEVI+K+VSNPKFASMMQEKINMKVDTS IE+EIDNYQKELRKSHSTK
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  421  FKLIEEIDNLDVEDKHYKRRKNDLDDRLYRMYDKIEELESLLIDAKAKKQTIEAEKLTGD  480
            FKLIEEIDNLDVEDKHYKRRK+DLDDRLYRMYDK++ELES LIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  481  NIYKVLIYFDKLYKVMNDVERRQLITALISEIQIYEEKQPNGQWLKSITFKLPIIDKDLN  540
            NIYKVLIYFDKLYKVMNDVERRQLI+ALISEIQ+YEEKQ+NGQWLKSITFKLPII+ +LN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  541  IGLDNDEQVECVVLLQR  557
            IGLDNDEQVECV LL++
Sbjct  541  IGLDNDEQVECVSLLEK  557

20) SDE12394_07055 in NC_017567


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  801 bits (3032),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 503/557 (91%), Positives = 542/557 (98%), Gaps = 0/557 (0%)

Query  1    MSKEKIKVYLYTRVSTSIQIDGYSLEAQKSRMKAFALYNDYEIVGEYEDAGKSGKSIEGR  60
            MSKEKIKVYLYTRVSTSIQI+GYSLEAQKSRMKAFA+YNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   IQFTRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQTMQDFGVNLICVEDGIDSSK  120
            IQF RMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTL+ MQD+GVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DAGKLMISVLSAVAEIERENIRVQTMEGRIQKAREGKWNGGFAPYGYQLIDGKLLINEEE  180
            DAGKLMISVLSAVAEIERENI +QTMEGRIQKA EGKWNGGFAPYGY+L DGKL+INEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AIAIRTIFDQYVNTSIGANGLSKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240
            A+AIRTIFDQYVNT+IGANG+SKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAFGRRTLEKVHGTRNEYRQVDQDDYIVAEGIHEAIIPDELWqaaqvklkaqakkYEHVN  300
            IAFGRRTLEKVHGTRNEY+QV+QD+Y+++EGIHEAI++DE+WQAAQVKLK+QAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  KGKNMRTHLLSGIVKCPICGAGMFGNKSIKYKKDGTKYKDFYYYGCKHRLMNRGHKCTYN  360
            KGK+ RTHLLSGIVKCPICG GMFGNK IK KKDGTKYKDFYYYGC+HR M RG+KCT++
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  361  KQIREELLDDAVAEVIIKLVSNPKFASMMQEKINMKVDTSAIENEIDNYQKELRKSHSTK  420
            KQIREELLDDAVAEVI+K+VSNPKFASMMQEKINMKVDTS IE+EIDNYQKELRKSHSTK
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  421  FKLIEEIDNLDVEDKHYKRRKNDLDDRLYRMYDKIEELESLLIDAKAKKQTIEAEKLTGD  480
            FKLIEEIDNLDVEDKHYKRRK+DLDDRLYRMYDK++ELES LIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  481  NIYKVLIYFDKLYKVMNDVERRQLITALISEIQIYEEKQPNGQWLKSITFKLPIIDKDLN  540
            NIYKVLIYFDKLYKVMNDVERRQLI+ALISEIQ+YEEKQ+NGQWLKSITFKLPII+ +LN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  541  IGLDNDEQVECVVLLQR  557
            IGLDNDEQVECV LL++
Sbjct  541  IGLDNDEQVECVSLLEK  557

21) GGS_1218 in NC_018712


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  801 bits (3032),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 503/557 (91%), Positives = 542/557 (98%), Gaps = 0/557 (0%)

Query  1    MSKEKIKVYLYTRVSTSIQIDGYSLEAQKSRMKAFALYNDYEIVGEYEDAGKSGKSIEGR  60
            MSKEKIKVYLYTRVSTSIQI+GYSLEAQKSRMKAFA+YNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   IQFTRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQTMQDFGVNLICVEDGIDSSK  120
            IQF RMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTL+ MQD+GVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DAGKLMISVLSAVAEIERENIRVQTMEGRIQKAREGKWNGGFAPYGYQLIDGKLLINEEE  180
            DAGKLMISVLSAVAEIERENI +QTMEGRIQKA EGKWNGGFAPYGY+L DGKL+INEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AIAIRTIFDQYVNTSIGANGLSKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240
            A+AIRTIFDQYVNT+IGANG+SKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAFGRRTLEKVHGTRNEYRQVDQDDYIVAEGIHEAIIPDELWqaaqvklkaqakkYEHVN  300
            IAFGRRTLEKVHGTRNEY+QV+QD+Y+++EGIHEAI++DE+WQAAQVKLK+QAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  KGKNMRTHLLSGIVKCPICGAGMFGNKSIKYKKDGTKYKDFYYYGCKHRLMNRGHKCTYN  360
            KGK+ RTHLLSGIVKCPICG GMFGNK IK KKDGTKYKDFYYYGC+HR M RG+KCT++
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  361  KQIREELLDDAVAEVIIKLVSNPKFASMMQEKINMKVDTSAIENEIDNYQKELRKSHSTK  420
            KQIREELLDDAVAEVI+K+VSNPKFASMMQEKINMKVDTS IE+EIDNYQKELRKSHSTK
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  421  FKLIEEIDNLDVEDKHYKRRKNDLDDRLYRMYDKIEELESLLIDAKAKKQTIEAEKLTGD  480
            FKLIEEIDNLDVEDKHYKRRK+DLDDRLYRMYDK++ELES LIDAKAKKQTIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  481  NIYKVLIYFDKLYKVMNDVERRQLITALISEIQIYEEKQPNGQWLKSITFKLPIIDKDLN  540
            NIYKVLIYFDKLYKVMNDVERRQLI+ALISEIQ+YEEKQ+NGQWLKSITFKLPII+ +LN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  541  IGLDNDEQVECVVLLQR  557
            IGLDNDEQVECV LL++
Sbjct  541  IGLDNDEQVECVSLLEK  557

22) SPNA45_01339 in NC_018594


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  800 bits (3027),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 520/528 (99%), Positives = 525/528 (99%), Gaps = 0/528 (0%)

Query  1    MKAFAIYNDYEIVGEYEDAGKSGKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARN  60
            MKAFAIYNDYEIVGEYEDAGKS+KSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARN
Sbjct  32   MKAFAIYNDYEIVGEYEDAGKSDKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARN  91

Query  61   AADVLSTLQIMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIERENISIQTMEGRIQ  120
            AADVLSTL+IMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIERENISIQTMEGRIQ
Sbjct  92   AADVLSTLHIMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIERENISIQTMEGRIQ  151

Query  121  KAREGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIGANGISKYLENHGIR  180
            KA EGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIGANGISKYLENHGIR
Sbjct  152  KAGEGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIGANGISKYLENHGIR  211

Query  181  KIQRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRNLEKVHGTRNEYKQVEQDEYLISEG  240
            KI RQNGKNPLFDAGLIRKILKNPVYNGKIAFGRR LEKVHGTRNEYKQVEQDEYLISEG
Sbjct  212  KIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVHGTRNEYKQVEQDEYLISEG  271

Query  241  IHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCPICGVGMFGNKCIkk  300
            IHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCPICGVGMFGNKCIKK
Sbjct  272  IHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCPICGVGMFGNKCIKK  331

Query  301  kkdgtkykdfyyygCNHRQMIRGHKCTFSKQIREELLDDAVAEVIVKIVSNPKFASMMQE  360
            KKDGTKYKDFYYYGCNHRQMIRG+KCTFSKQIREELLDDAVAEVIVKIVSNPKFASMMQE
Sbjct  332  KKDGTKYKDFYYYGCNHRQMIRGNKCTFSKQIREELLDDAVAEVIVKIVSNPKFASMMQE  391

Query  361  KINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRLYRM  420
            KINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRLYRM
Sbjct  392  KINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRLYRM  451

Query  421  YDKIDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKLYKVMNDVERRQLISALISE  480
            YDK+DELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKLYKVMNDVERRQLISALISE
Sbjct  452  YDKLDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKLYKVMNDVERRQLISALISE  511

Query  481  IQVYEEKQSNGQWLKSITFKLPIIEENLNIDLDNDEQVECVSLLEKRS  528
            IQVYEEKQSNGQWLKSITFKLPIIEENLNI+LDNDEQVECVSLLEKRS
Sbjct  512  IQVYEEKQSNGQWLKSITFKLPIIEENLNIGLDNDEQVECVSLLEKRS  559

23) SII_0995 in NC_022237


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  767 bits (2904),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/557 (90%), Positives = 542/557 (98%), Gaps = 0/557 (0%)

Query  1    MSKEKIKVYLYTRVSTSIQIDGYSLEAQKSRMKAFALYNDYEIVGEYEDAGKSGKSIEGR  60
            MSKEKIKVYLYTRVSTSIQI+GYSLEAQKSRMKAFA+YNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   VQFTRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDFGVNLICVEDGIDSSK  120
            +QF RMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTL+IMQD+GVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DAGKLMISVLSAVAEIERENIRVQTMEGRIQKAREGKWNGGFAPYGYQLIDGKLLINEEE  180
            DAGKLMISVLSAVAEIERENI +QTMEGRIQKA EGKWNGGFAPYGY+L DGKL+INEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AIAIRTIFDQYVNTSIGANGLSKYLEKHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240
            A+AIRTIFDQYVNT+IGANG+SKYLE+HGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAFGRRTLEKVHGTRNEYRQVEQDDYLVAEGIHEAIIPDELWqaaqvklkaqakkYEHVN  300
            IAFGRRTLEKVHGTRNEY+QVEQD+YL++EGIHEAI++DE+WQAAQVKLK+QAKKYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  KGKNIRTHLLSGIVKCPICGAGMFGNKSIKYKKDGTKYKDFYYYGCKHRLMNRGHKCTYN  360
            KGK+ RTHLLSGIVKCPICG GMFGNK IK KKDGTKYKDFYYYGC+HR M RG+KCT++
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  361  KQIREELLDDAVAEVIIKLVSNPKFASMIQEKIKMKVDTSAIENEIDNYQKELRKSHSTK  420
            KQIREELLDDAVAEVI+K+VSNPKFASM+QEKI+MKVDTS IE+EIDNYQKELRKSHSTK
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  421  FKLIEEIDNLDVEDKHYKRRKNDLDDRLYRMYDKIEDLESQlieakakketieaekltGD  480
            FKLIEEIDNLDVEDKHYKRRK+DLDDRLYRMYDK+++LES LI+AKAKK+TIEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  481  NIYKVLIYFDKLYKVMNDVERRQLIEALISEVQIYEEKQANGQWLKSITFKLPIIDENLN  540
            NIYKVLIYFDKLYKVMNDVERRQLI ALISE+Q+YEEKQ+NGQWLKSITFKLPII+ENLN
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  541  ISLDNDEQVEAVGLLVK  557
            I+LDNDEQVE V+LL K
Sbjct  541  IGLDNDEQVECVSLLEK  557

24) FP2_18180 in NC_021042


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  739 bits (2797),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 427/557 (77%), Positives = 503/557 (91%), Gaps = 0/557 (0%)

Query  1    MKKGKIKVYIYTRVSTAIQIDGYSLDAQKSRMKAYAEFNDYEIVGEYEDAGKSGKSIEGR  60
            M K KIKVY+YTRVST+IQI+GYSL+AQKSRMKA+A +NDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   VEFNRMMEDIKSGKDGVSYVLVFKLSRFGRNAADVLSTLQVMQDFGVNLICVEDGIDSSK  120
            ++FNRMMEDIKSGKDGVS+VLVFKLSRF+RNAADVLSTL++MQD+GVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DAGKLMISVLSAVAEIERENIRVQTMEGRIQKAREGKWNGGFAPYGYKLEKGQLFINEEE  180
            DAGKLMISVLSAVAEIERENI +QTMEGRIQKA EGKWNGGFAPYGYKLE G+LFINEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AAAIRVIFDQYVHTDTGANGLAKYLATHGIRKIQRQNGKNPLFDAALIRRILKNPVYCGK  240
            A AIR IFDQYV+T  GANG++KYL  HGIRKI RQNGKNPLFDA+LIR+ILKNPVY GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAYGRRRTEKVHGTRNDYRLVEQDDYLLVDGLHEGIVSEELWHEAQVKLLAQAEKYEHVN  300
            IA+GRR  EKVHGTRN+Y+ VEQD+YL+ +G+HE+IVS+E+W+ AQVKL +QA KYEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  RGKDTKIHLLSGIVKCPVCGVGMYGNKSIKHKADGTKYKDFFYYGCKHRTMTRGHKCDFK  360
            +GKDT+ HLLSGIVKCP+CGVGM+GNK IK K DGTKYKDF+YYGC+HR M RG+KC F 
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  361  KQINEELLDSAVAEVIVKLVSNPKFAAMMQEKISMKVDTSAIEQEIAAHEKQLRQSYSVK  420
            KQI EELLD AVAEVIVK+VSNPKFA+MMQEKI+MKVDTS IE+EI   +K+LR+S S K
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  421  ARLMEEIDSLDPNDKHYIKRKADLDDRLYKMYDKIEDTENQLIAARAKKMAIEAEKLTGD  480
             +L+EEID+LD +DKHY +RK DLDDRLY+MYDK+++ E+ LI A+AKK +IEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  481  NIYKVLIYFDKLYSIMDDQEKRQLMESLLSEVQIYEERQPNGQWLKSIKFKLPIIAEDMS  540
            NIYKVLIYFDKLY +M+D E+RQL+ +L+SE+Q+YEE+Q+NGQWLKSI FKLPII E+++
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  541  LSLDNDTHIECVIALSK  557
            ++LDND ++ECV  L K
Sbjct  541  IGLDNDEQVECVSLLEK  557

25) CLS_31010 in NC_021047


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  723 bits (2734),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 434/559 (78%), Positives = 509/559 (92%), Gaps = 0/559 (0%)

Query  6    MEKEKIKVYTYTRVSTAMQVDGYSLDAQKAKMKAYADYNDYEIVGEYEDAGKSGKSIEGR  65
            M KEKIKVY YTRVST++Q++GYSL+AQK++MKA+A YNDYEIVGEYEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  66   AQFSQMMEDIKSGKDGVSYVLVFKLSRFGRNAADVLSSLQVMQDFGVNLVCVEDGIDSSK  125
             QF++MMEDIKSGKDGVS+VLVFKLSRF+RNAADVLS+L++MQD+GVNL+CVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  126  DAGKLMISVLSAVAEIERENIRVQTMEGRIQKAREGRWNGGFAPYGYQLVDGKLTINEEE  185
            DAGKLMISVLSAVAEIERENI +QTMEGRIQKA EG+WNGGFAPYGY+L DGKL INEEE
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  186  AEAIRVIYDQYVHTDMGANGIAKYLENHGIRKIPRQNGKNPLFDAHLIRLILKNPVYCGK  245
            A AIR I+DQYV+T +GANGI+KYLENHGIRKIPRQNGKNPLFDA LIR ILKNPVY GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  246  IAYGRRKMEKVRGTRNEYKLVEQDNYLLADGVHEPIVSEEVWqaaqvkllaqakRYEHVN  305
            IA+GRR +EKV+GTRNEYK VEQD+YL+++G+HE+IVS+EVWQAAQVKL +QAK+YEHVN
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  306  RGKDEHVHLLSGIVKCPVCGAGMYGNKSIKHKADGTKYKDFYYYGCKHRTMIRGHKCDYK  365
            +GKD + HLLSGIVKCP+CG GM+GNK IK K DGTKYKDFYYYGC+HR MIRG+KC + 
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  366  KQIREELLDDAVAEVIVKLVSNPKFAAMMQEKINRKVDTAAIDQEIANYEKQLRQHYSVK  425
            KQIREELLDDAVAEVIVK+VSNPKFA+MMQEKIN KVDT+ I++EI NY+K+LR+  S K
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  426  SKLAEEIDSLDPDDRHYVRRKADLDDRLYKMYDKIEDTESLLIAARAKKQAIEAEKLTGD  485
             KL EEID+LD +D+HY RRK DLDDRLY+MYDK+++ ES LI A+AKKQ+IEAEKLTGD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  486  NIYKVLTYFEKLYGMMNEVERRQLMEMLISEIQIYPERQPNGQWLKSIKFKLPIIEEDMS  545
            NIYKVL YF+KLY +MN+VERRQL+  LISEIQ+Y E+Q+NGQWLKSI FKLPIIEE+++
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  546  ISLDNEEQVETVILLSHKT  564
            I+LDN+EQVE V LL  ++
Sbjct  541  IGLDNDEQVECVSLLEKRS  559

26) FPR_23970 in NC_021020


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  710 bits (2687),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 415/555 (75%), Positives = 505/555 (91%), Gaps = 0/555 (0%)

Query  2    KEKTKVYIYTRVSTAVQVDGYSLDAQKSRMKAYAEFNDFEIVGEYEDAGKSGKSIEGRLE  61
            KEK KVY+YTRVST++Q++GYSL+AQKSRMKA+A +ND+EIVGEYEDAGKS+KSIEGR++
Sbjct  3    KEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGRIQ  62

Query  62   FNRMMEDIKSGKDGVSYVLVFKLSRFGRNAADVLSTLQVMQDFDVNLICVEDGIDSSKDA  121
            FNRMMEDIKSGKDGVS+VLVFKLSRF+RNAADVLSTL++MQD++VNLICVEDGIDSSKDA
Sbjct  63   FNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSKDA  122

Query  122  GKLMISVLSAVAEIERENIRVQTMEGRIQKAREGKWNGGFAPYGYKLEKGMLYineeeae  181
            GKLMISVLSAVAEIERENI +QTMEGRIQKA EGKWNGGFAPYGYKLE G L+INEEEA 
Sbjct  123  GKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEEAV  182

Query  182  airiiFDQYVHTDIGANGLAKYLANHGINKIQRQNGKNPLFDAALIRRILKNPVYCGKIA  241
            AIR IFDQYV+T IGANG++KYL NHGI KI RQNGKNPLFDA+LIR+ILKNPVY GKIA
Sbjct  183  AIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGKIA  242

Query  242  YGRRRTEKVHGTRNDYRLVEQENYLLVDGLHEAIVSEGLWHEAQVKLLAQAKKYEKVNNG  301
            +GRR  EKVHGTRN+Y+ VEQ++YL+ +G+HEAIVS+ +W+ AQVKL +QAKKYE VN+G
Sbjct  243  FGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVNKG  302

Query  302  KDNKVHLLTGLLKCPICGAGMYGNKSIKHKPDGTKYKDFFYYGCKHRTMTRGHKCEYKKQ  361
            KD + HLL+G++KCPICG GM+GNK IK K DGTKYKDF+YYGC+HR M RG+KC + KQ
Sbjct  303  KDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFSKQ  362

Query  362  INEELLDGAVAEVIIKLVSNPKFAAMMQQKINMKIDTSAIEQEIANYEKQLRQSYATKSR  421
            I EELLD+AVAEVI+K+VSNPKFA+MMQ+KINMK+DTS IE+EI NY+K+LR+S +TK +
Sbjct  363  IREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTKFK  422

Query  422  LIDEIDTLDPDDKHYIKRKADLDDRLYKMYDKIEDTENLLIEARAKKMAIEAEKLTADNI  481
            LI+EID LD +DKHY +RK DLDDRLY+MYDK+++ E+ LI+A+AKK +IEAEKLT+DNI
Sbjct  423  LIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGDNI  482

Query  482  YKVLIYFEKLYAVMDEQEKRQIMESLISEIHIYEERQPNGQWLKSIKFKLPIIEEDMEMS  541
            YKVLIYF+KLY VM++ E+RQ++ +LISEI++YEE+Q+NGQWLKSI FKLPIIEE+++++
Sbjct  483  YKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLNIG  542

Query  542  LDSDTHVECVLLMSK  556
            LD+D +VECV L+ K
Sbjct  543  LDNDEQVECVSLLEK  557

27) MYY_1101 in NC_017769


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  646 bits (2441),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/427 (99%), Positives = 425/427 (99%), Gaps = 0/427 (0%)

Query  1    MAEIERENIRIQTMEGRIQKAREGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYV  60
            +AEIERENI IQTMEGRIQKA EGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYV
Sbjct  133  VAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYV  192

Query  61   NTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVH  120
            NTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVH
Sbjct  193  NTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVH  252

Query  121  GTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSG  180
            GTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSG
Sbjct  253  GTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSG  312

Query  181  IVKCPICGVGMFGNKCIkkkkdgtkykdfyyygCKHRQMIRGHKCTFSKQIREELLDDAV  240
            IVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGC+HRQMIRG+KCTFSKQIREELLDDAV
Sbjct  313  IVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFSKQIREELLDDAV  372

Query  241  AEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDV  300
            AEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDV
Sbjct  373  AEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDV  432

Query  301  EDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKL  360
            EDKHYKRRKQDLDDRLYRMYDK+DELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKL
Sbjct  433  EDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKL  492

Query  361  YKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLNIGLDNDEQVECV  420
            YKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLNIGLDNDEQVECV
Sbjct  493  YKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLNIGLDNDEQVECV  552

Query  421  SLLEKRS  427
            SLLEKRS
Sbjct  553  SLLEKRS  559

28) HMPREF0837_11434 in NC_014251


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  646 bits (2441),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/427 (99%), Positives = 425/427 (99%), Gaps = 0/427 (0%)

Query  1    MAEIERENIRIQTMEGRIQKAREGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYV  60
            +AEIERENI IQTMEGRIQKA EGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYV
Sbjct  133  VAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYV  192

Query  61   NTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVH  120
            NTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVH
Sbjct  193  NTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVH  252

Query  121  GTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSG  180
            GTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSG
Sbjct  253  GTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSG  312

Query  181  IVKCPICGVGMFGNKCIkkkkdgtkykdfyyygCKHRQMIRGHKCTFSKQIREELLDDAV  240
            IVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGC+HRQMIRG+KCTFSKQIREELLDDAV
Sbjct  313  IVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFSKQIREELLDDAV  372

Query  241  AEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDV  300
            AEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDV
Sbjct  373  AEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDV  432

Query  301  EDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKL  360
            EDKHYKRRKQDLDDRLYRMYDK+DELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKL
Sbjct  433  EDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKL  492

Query  361  YKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLNIGLDNDEQVECV  420
            YKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLNIGLDNDEQVECV
Sbjct  493  YKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLNIGLDNDEQVECV  552

Query  421  SLLEKRS  427
            SLLEKRS
Sbjct  553  SLLEKRS  559

29) ROI_14610 in NC_021040


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  496 bits (1869),  Expect = 3e-141, Method: Compositional matrix adjust.
 Identities = 285/561 (51%), Positives = 426/561 (76%), Gaps = 5/561 (0%)

Query  1    MKNKKIKCDIYTRVSTTMQVDGYSLDAQKEKLKRYAEFQNMEIVNEYSDEGKSGKSVEGR  60
            M + KIK  +YTRVST++Q++GYSL+AQK ++K +A +++ EIV EY D GKS+KS+EGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   PEFQRMLDNIENGTDEVQFVLVFKLSRFGRNAADVLNSLQRMQDFGVNLICVEDGIDSSK  120
             +F+RM+++I +G D V FVLVFKLSRF+RNAADVL++L+ MQD+GVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DSGKLMISVLSAVAEIERENILVQTMEGRKQKAREGKWNGGFAPYGYELVNGELQIAEDE  180
            D+GKLMISVLSAVAEIERENI +QTMEGR QKA EGKWNGGFAPYGY L +G L I E+E
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AEIIRLIYDKFIHTNMGISAIAAWLNQHGYKKKKRQNNTLDAFASSFIKGVLDNPVYCGK  240
            A  IR I+D++++T +G ++I+  L++HG +K  RQN     F +++I+ +L NPVY GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  LAYGRRKNEKVSGTRNEYRIVKQENYMLHDGIHEGIISETDWELAHQKREKTGVKYEKTH  300
            +A+GRR  EKV GTRNEY+ V Q++Y++ +GIHE+I+S+  W+ A+ K    + KYE  +
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  SL--DHEHILSGILRCPLCGSGMYGNVNRKKKKDGTLYKDYFYYACKHRRLVDGHKCGYR  358
                 + H+LSGI++CP+CG GM+GN   KKKKDGT YKD++YY+C+HR+++ G+KC + 
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  359  KQWSEEKINNAVEEVIRKLVKNPKFEEAILNKIGSRIDTEEIEKEIDGLEKQHRQLTGAK  418
            KQ  EE +++AV EVI K+V NPKF   + +KI  ++DT EIEKEID  +K+ R+  ++K
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  419  ARLGQQMDSLDIMDKFYEKKYQDMETRLYRLYDEIEGVENSIEEVKNRLLNIQQQKISEE  478
             +L +++D+LD+ DK Y ++ QD++ RLYR+YD ++ +E+S+ + K +   I+ +K++ +
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  479  NVYQFLLYFDKLYDKFTDLEKKEFLNSFVEQVDIYEQEQPDGRFLKHIKFRFPVYFGDRE  538
            N+Y+ L+YFDKLY    D+E+++++++++ ++++YE+ Q++G+ LK I F++P+     E
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPII---EE  537

Query  539  TQELCWDNESTVETVVLLSHK  559
              ++  DN+  VE V LL  +
Sbjct  538  NLNIGLDNDEQVECVSLLEKR  558

30) CL2_28980 in NC_021016


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  495 bits (1867),  Expect = 3e-141, Method: Compositional matrix adjust.
 Identities = 284/560 (51%), Positives = 427/560 (77%), Gaps = 5/560 (0%)

Query  1    MKNKKIKCDIYTRVSTTMQVDGYSLDAQKEKLKRYAEFQNMEIVNEYSDEGKSGKSVEGR  60
            M + KIK  +YTRVST++Q++GYSL+AQK ++K +A +++ EIV EY D GKS+KS+EGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   PEFQRMLDNIENGTDEVQFVLVFKLSRFGRNAADVLNSLQRMQDFGVNLICVEDGIDSSK  120
             +F+RM+++I +G D V FVLVFKLSRF+RNAADVL++L+ MQD+GVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DSGKLMISVLSAVAEIERENILVQTMEGRKQKAREGKWNGGFAPYGYELVNGELQIAEDE  180
            D+GKLMISVLSAVAEIERENI +QTMEGR QKA EGKWNGGFAPYGY L +G L I E+E
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AEIIRLIYDKFIHTNMGISAIAAWLNQHGYKKKKRQNNTLDAFASSFIKGVLDNPVYCGK  240
            A  IR I+D++++T +G ++I+  L++HG +K  RQN     F +++I+ +L NPVY GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  LAYGRRKNEKVSGTRNEYRIVKQENYMLHDGIHEGIISETDWELAHQKREKTGVKYEKTH  300
            +A+GRR  EKV GTRNEY+ V Q++Y++ +GIHE+I+S+  W+ A+ K    + KYE  +
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  SL--DHEHILSGILRCPLCGSGMYGNVNRKKKKDGTLYKDYFYYACKHRRLVDGHKCGYR  358
                 + H+LSGI++CP+CG GM+GN   KKKKDGT YKD++YY+C+HR+++ G+KC + 
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  359  KQWSEEKINNAVEEVIRKLVKNPKFEEAILNKIGSRIDTEEIEKEIDGLEKQHRQLTGAK  418
            KQ  EE +++AV EVI K+V NPKF   + +KI  ++DT EIEKEID  +K+ R+  ++K
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  419  ARLGQQMDSLDIMDKFYEKKYQDMETRLYRLYDEIEGVENSIEEVKNRLLNIQQQKISEE  478
             +L +++D+LD+ DK Y ++ QD++ RLYR+YD ++ +E+S+ + K +   I+ +K++ +
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  479  NVYQFLLYFDKLYDKFTDLEKKEFLNSFVEQVDIYEQEQPDGRFLKHIKFRFPVYFGDRE  538
            N+Y+ L+YFDKLY    D+E+++++++++ ++++YE+ Q++G+ LK I F++P+     E
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPII---EE  537

Query  539  TQELCWDNESTVESMVLIQK  558
              ++  DN+  VE + L++K
Sbjct  538  NLNIGLDNDEQVECVSLLEK  557

31) RHOM_13305 in NC_015977


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  480 bits (1810),  Expect = 9e-137, Method: Compositional matrix adjust.
 Identities = 283/562 (51%), Positives = 427/562 (76%), Gaps = 5/562 (0%)

Query  1    MKNKKIKCDIYTRVSTTMQVDGYSLDAQKEKLKRYAEFQNMEIVNEYSDEGKSGKSVEGR  60
            M + KIK  +YTRVST++Q++GYSL+AQK ++K +A +++ EIV EY D GKS+KS+EGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   PEFQRMLDNIENGTDEVQFVLVFKLSRFGRNAADVLNSLQRMQDFGVNLICVEDGIDSSK  120
             +F+RM+++I +G D V FVLVFKLSRF+RNAADVL++L+ MQD+GVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DSGKLMISVLSAVAEIERENILVQTMEGRKQKAREGKWNGGFAPYGYELVNGELQIAEDE  180
            D+GKLMISVLSAVAEIERENI +QTMEGR QKA EGKWNGGFAPYGY L +G L I E+E
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AEIIRLIYDKFIHTNMGISAIAAWLNQHGYKKKKRQNNTLDAFASSFIKGVLDNPVYCGK  240
            A  IR I+D++++T +G ++I+  L++HG +K  RQN     F +++I+ +L NPVY GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  LAYGRRKNEKVSGTRNEYRIVKQENYMLHDGIHEGIISETDWELAHQKREKTGVKYEKTH  300
            +A+GRR  EKV GTRNEY+ V Q++Y++ +GIHE+I+S+  W+ A+ K    + KYE  +
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  SL--DHEHILSGILRCPLCGSGMYGNVNRKKKKDGTLYKDYFYYACKHRRLVDGHKCGYR  358
                 + H+LSGI++CP+CG GM+GN   KKKKDGT YKD++YY+C+HR+++ G+KC + 
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  359  KQWSEEKINNAVEEVIRKLVKNPKFEEAILNKIGSRIDTeeiekeieglekQHKQLTGAK  418
            KQ  EE +++AV EVI K+V NPKF   + +KI  ++DT EIEKEI+  +K+ ++  ++K
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  419  ARLGQQMDSLDIMDKFYEKKYQDMETRLYRLYDEIEGVENSIEEVKNRLLNIQQQKISEE  478
             +L +++D+LD+ DK Y ++ QD++ RLYR+YD ++ +E+S+ + K +   I+ +K++ +
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  479  NVYQFLLYFDKLYDKFTDLEKKEFLNSFVEQVDIYEQEQPDGRFLKHIKFRFPVYFGDRE  538
            N+Y+ L+YFDKLY    D+E+++++++++ ++++YE+ Q++G+ LK I F++P+     E
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPII---EE  537

Query  539  TQELCWDNESTVETVCLMSKKD  560
              ++  DN+  VE V L+ K+ 
Sbjct  538  NLNIGLDNDEQVECVSLLEKRS  559

32) CK5_04130 in NC_021022


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  475 bits (1791),  Expect = 3e-135, Method: Compositional matrix adjust.
 Identities = 282/562 (51%), Positives = 425/562 (76%), Gaps = 5/562 (0%)

Query  1    MKNKKIKCDIYTRVSTTMQVDGYSLDAQKEKLKRYAEFQNMEIVNEYSDEGKSGKSVEGR  60
            M + KIK  +YTRVST++Q++GYSL+AQK ++K +A +++ EIV EY D GKS+KS+EGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   PEFQRMLDNIENGTDEVQFVLVFKLSRFGRNAADVLNSLQRMQDFGVNLICVEDGIDSSK  120
             +F+RM+++I +G D V FVLVFKLSRF+RNAADVL++L+ MQD+GVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DSGKLMISVLSAVAEIERENILVQTMEGRKQKAREGKWNGGFAPYGYELVNGELQIAEDE  180
            D+GKLMISVLSAVAEIERENI +QTMEGR QKA EGKWNGGFAPYGY L +G L I E+E
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AEIIRLIYDKFIHTNMGISAIATWLNQHGYKKKKRQNNTLDAFAASFTKGVLDNPVYCGK  240
            A  IR I+D++++T +G ++I+  L++HG +K  RQN     F A++ + +L NPVY GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  LAYGRRKNEKVSGTRNEYRIVKQENYMLHDGIHEGIISETDWELAHQKREKTGVKYEKTH  300
            +A+GRR  EKV GTRNEY+ V Q++Y++ +GIHE+I+S+  W+ A+ K    + KYE  +
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  SL--EHEHILSGILRCPLCGSGMYGNVNRKKKKDGTLYKDYFYYACKHRRLVDGHKCGYR  358
                 + H+LSGI++CP+CG GM+GN   KKKKDGT YKD++YY+C+HR+++ G+KC + 
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  359  KQWSEEKINNAVEEVIRKLVKNPKFEEAILNKIGSRIDTeeiekeierlekQHRQLTGAK  418
            KQ  EE +++AV EVI K+V NPKF   + +KI  ++DT EIEKEI+  +K+ R+  ++K
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  419  GRLGQQMDSLDIMDKFYEKKYQDMETRLYRLYDEIEGVENSIEEVKNRLLNIRQQKISEE  478
             +L +++D+LD+ DK Y ++ QD++ RLYR+YD ++ +E+S+ + K +   I  +K++ +
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  479  NVYQFLLYFDKLYDKFTDLEKKEFLNSFVEQVDIYEQEQPDGRFLKHIKFRFPVYFGDRE  538
            N+Y+ L+YFDKLY    D+E+++++++++ ++++YE+ Q++G+ LK I F++P+     E
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPII---EE  537

Query  539  TQELCWDKESTVETVVGLQRKD  560
              ++  D++  VE V  L+++ 
Sbjct  538  NLNIGLDNDEQVECVSLLEKRS  559

33) RTO_13170 in NC_021015


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  475 bits (1790),  Expect = 4e-135, Method: Compositional matrix adjust.
 Identities = 285/560 (51%), Positives = 424/560 (76%), Gaps = 5/560 (0%)

Query  1    MKNKKIKCDIYTRVSTTMQVDGYSLDAQKEKLKRYAEFQNMEIVNEYSDEGKSGKSVEGR  60
            M + KIK  +YTRVST++Q++GYSL+AQK ++K +A +++ EIV EY D GKS+KS+EGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   PEFQRMLDNIENGTDEVQFVLVFKLSRFGRNAADVLNSLQRMQDFGVNLICVEDGIDSSK  120
             +F+RM+++I +G D V FVLVFKLSRF+RNAADVL++L+ MQD+GVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DSGKLMISVLSAVAEIERENILVQTMEGRKQKAREGKWNGGFAPYGYELVNGELQIAEDE  180
            D+GKLMISVLSAVAEIERENI +QTMEGR QKA EGKWNGGFAPYGY L +G L I E+E
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  AEIIRLIYDKFIHTNMGISAIAAWLNQHGYKKKKRQNNTLDAFAASFIKGVLDNPVYCGK  240
            A  IR I+D++++T +G ++I+  L++HG +K  RQN     F A++I+ +L NPVY GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  LAYGRRKNEKVSGTRNEYRIVKQENYMLHDGIHEGIVSETDWELAHQKREKTGVKYEKTH  300
            +A+GRR  EKV GTRNEY+ V Q++Y++ +GIHE+IVS+  W+ A+ K    + KYE  +
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  301  SL--DHEHILSGILRCPLCGSGMYGNVNRKKKKDGTLYKDYFYYACKHRRLVDGHKCGYR  358
                 + H+LSGI++CP+CG GM+GN   KKKKDGT YKD++YY+C+HR+++ G+KC + 
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  359  KQWSEEKINNAVEEVIRKLVKNPKFEEAILNKIGSRIDTeeiekeierlekQHRQLTGAK  418
            KQ  EE +++AV EVI K+V NPKF   + +KI  ++DT EIEKEI+  +K+ R+  ++K
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  419  GRLGQQMDSLDIMDKFYEKKYQDMETRLYHLYDEIEGVENSIEEVKNRLLNIRQQKISEE  478
             +L +++D+LD+ DK Y ++ QD++ RLY++YD ++ +E+S+ + K +   I  +K++ +
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  479  NVYQFLLYFDKLYDKFTDLEKKEFLNSFVEQVDIYEQEQPDGRFLKHIKFRFPVYFGDRE  538
            N+Y+ L+YFDKLY    D+E+++++++++ ++++YE+ Q++G+ LK I F++P+     E
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPII---EE  537

Query  539  TQELCWDNESTVETCVLLSK  558
              ++  DN+  VE   LL K
Sbjct  538  NLNIGLDNDEQVECVSLLEK  557

34) CCU_17030 in NC_021018


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  452 bits (1704),  Expect = 3e-128, Method: Compositional matrix adjust.
 Identities = 278/558 (50%), Positives = 407/558 (73%), Gaps = 8/558 (1%)

Query  1    MKKTKTKCYLYTRVSTSMQVDGYSLDAQRDKLRKYAEYEDMVVAGEYSDEGFSGKNIQGR  60
            M K K K YLYTRVSTS+Q++GYSL+AQ+ +++ +A Y+D  + GEY D G S+K+I+GR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   HEFQRMLQDIQDCKDGVEYVLVFKLSRFGRNAADVLNSLQLMQDFGVNLICVEDGIDSSK  120
             +F+RM++DI+  KDGV +VLVFKLSRF+RNAADVL++L++MQD+GVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DSGKLMISVLSAVAEIERENIRTQTMAGREQKAREGKWNGGFAPYGYRLEKGELLIAEDE  180
            D+GKLMISVLSAVAEIERENI  QTM GR QKA EGKWNGGFAPYGY+LE G L+I E+E
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  VDVIRTIFDRYIHTNDGVSGVAKYLNRQGFVKKMRQNGTIPGFSASFVKSIIDNPVYMGK  240
               IRTIFD+Y++T  G +G++KYL+ +G+ K  RQNG  P F A++++ I+ NPVY GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAYGRRRTEKKIGTRNEMHVVEQSEFPVYEGKHEAIISEEDWNLAQEKRKVNA--YRREK  298
            IA+GRR  EK  GTRNE   VEQ E+ + EG HEAI+S+E W+ AQ K K +A  Y + +
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  299  VNDPTHAHILSGILKCPCCGKSLYGN--IAKAHSKDKKTRYYYY-CKNTVTPTGHECTFR  355
                T++H+LSGI+KCP CG +++GN  I K     K   +YYY C++     G+ CTF 
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  356  LNIEQTEMNRMVASIISAMVSNPRFADAIKAKIGSAVDTNDlekqlealqaqlrqTLGTK  415
             +I +  ++  VA +I  +VSNP+FA  ++ KI   VDT+++EK+++  Q +LR++ +TK
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  416  ARLERQMDGLDVNDPYYDRKISDLQRRYDEQYGAIDEIEVQIDDVQSQIRSIRQEKISGD  475
             +L  ++D LDV+D  Y R+  DL+ R    Y+ +DE+E  + D +++ ++I  EK++GD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  476  NIYRLLLAFDQVYEAASEVERKEFMRAFIERIELFPERQPDGNWIRKIIFNFPVPVNGTE  535
            NIY++L+ FD++Y   ++VER++++ A+I  I+++ E+Q++G+W++ I F++P+  +  +
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  536  VKELPLENETMVETVVKL  553
            +    L+N+  VE V  L
Sbjct  541  I---GLDNDEQVECVSLL  555

35) FPR_13150 in NC_021020


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  452 bits (1703),  Expect = 3e-128, Method: Compositional matrix adjust.
 Identities = 277/560 (50%), Positives = 409/560 (74%), Gaps = 8/560 (1%)

Query  1    MKKTKTKCYLYTRVSTSMQVDGYSLDAQRDKLRKYAEYEDMVVAGEYSDEGFSGKNIQGR  60
            M K K K YLYTRVSTS+Q++GYSL+AQ+ +++ +A Y+D  + GEY D G S+K+I+GR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   HEFQRMLQDIQDCKDGVEYVLVFKLSRFGRNAADVLNSLQLMQDFGVNLICVEDGIDSSK  120
             +F+RM++DI+  KDGV +VLVFKLSRF+RNAADVL++L++MQD+GVNLICVEDGIDSSK
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  121  DSGKLMISVLSAVAEIERENIRTQTMAGREQKAREGKWNGGFAPYGYRLEKGELLIAEDE  180
            D+GKLMISVLSAVAEIERENI  QTM GR QKA EGKWNGGFAPYGY+LE G L+I E+E
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  181  VDVIRTIFDRYIHTNDGVSGVAKYLNRQGFVKKLRQNGTIPGFSASFVKSIIDNPVYMGK  240
               IRTIFD+Y++T  G +G++KYL+ +G+ K  RQNG  P F A++++ I+ NPVY GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  241  IAYGRRRTEKKIGTRNEMHVVEQSEFPVYEGKHEAIISEEDWNLAQEKRKINA--YRREK  298
            IA+GRR  EK  GTRNE   VEQ E+ + EG HEAI+S+E W+ AQ K K +A  Y + +
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  299  VNDPTHAHILSGILKCPCCGKSLYGN--IAKAHSKDKKTRYYYY-CKNTVTPTGHECTFR  355
                T++H+LSGI+KCP CG +++GN  I K     K   +YYY C++     G+ CTF 
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  356  LNIEQMEMNRMVASIISAMVSDPRFADAIKAKIGSAVDTNDlekqlealqaqlrqTLGTK  415
             +I +  ++  VA +I  +VS+P+FA  ++ KI   VDT+++EK+++  Q +LR++ +TK
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  416  ARLERQMDGLDVNDPYYDRKISDLQRRYDEQYGAIDEIEVQIDDVQSQIRSIRQEKISGD  475
             +L  ++D LDV+D  Y R+  DL+ R    Y+ +DE+E  + D +++ ++I  EK++GD
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  476  NIYRLLLAFDQVYEAASEVERKEFMRAFIERIELFPEKQPDGNWIRKIIFNFPVPVNGTE  535
            NIY++L+ FD++Y   ++VER++++ A+I  I+++ EKQ++G+W++ I F++P+  +  +
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  536  VKELPLENETIVEAIVSLQR  555
            +    L+N+  VE +  L++
Sbjct  541  I---GLDNDEQVECVSLLEK  557

36) ES1_00510 in NC_021043


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  445 bits (1675),  Expect = 4e-126, Method: Compositional matrix adjust.
 Identities = 265/544 (49%), Positives = 388/544 (72%), Gaps = 8/544 (1%)

Query  1    MQVDGYSLDAQRDKLRKYAAYEDMVVAGEYSDEGFSGKNIQGRQEFQRMLNDIQDCKDGV  60
            +Q++GYSL+AQ+ +++ +A Y+D  + GEY D G S+K+I+GR +F+RM++DI+  KDGV
Sbjct  18   IQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGRIQFNRMMEDIKSGKDGV  77

Query  61   SYVLVFKLSRFGRNAADVLNSLQLMQDFGVNLICVEDGIDSSKDAGKLMISVLSAVAEIE  120
            S+VLVFKLSRF+RNAADVL++L++MQD+GVNLICVEDGIDSSKDAGKLMISVLSAVAEIE
Sbjct  78   SFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIE  137

Query  121  RENIRTQTMAGREQKAREGKWNGGFAPYGYKLESGNLVIAEDEVEVIRVIYDRYIHTNEG  180
            RENI  QTM GR QKA EGKWNGGFAPYGYKLE G+L I E+E   IR I+D+Y++T  G
Sbjct  138  RENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIG  197

Query  181  VAGIAKYLNRNGFVKKLRQNNTIPGFSRNFVQDVLDNPVYMGKIAYGRRRTEKRQGTRNE  240
              GI+KYL+ +G+ K  RQN   P F   +++ +L NPVY GKIA+GRR  EK +GTRNE
Sbjct  198  ANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVHGTRNE  257

Query  241  MHVVEQSEFPVYDGQHEAIISEEDWYLAQEKRKINSFKREKVNNP--DHAHILSGILKCP  298
               VEQ E+ + +G HEAI+S+E W  AQ K K ++ K E VN+    ++H+LSGI+KCP
Sbjct  258  YKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCP  317

Query  299  CCGKSMYGN--IAKAHSKDKKTRYYYY-CKNTVTPTGHECSFRLNIEQTEINKFVAKVIS  355
             CG +M+GN  I K     K   +YYY C++     G+ C+F  +I +  ++  VA VI 
Sbjct  318  ICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFSKQIREELLDDAVAEVIV  377

Query  356  AMVSNPQFIEAIQAKIGTAVDTEDMEKQIAVLQGQLKQAFGTKSRLERQMDTLDINDAHY  415
             +VSNP+F   +Q KI   VDT ++EK+I   Q +L+++ +TK +L  ++D LD++D HY
Sbjct  378  KIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHY  437

Query  416  DRKILDLQRRYDEQYDTIEEIEVQIGELQSQIRSIQQEKISGDNIYRLLLAFDEVYHSAT  475
             R+  DL+ R    YD ++E+E  + + +++ ++I+ EK++GDNIY++L+ FD +Y    
Sbjct  438  KRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKLYKVMN  497

Query  476  EAEQKEFMKAFIERIEMFPEKRKDGSWIKKIVFNFPVPVDGEEVKELPLETETTVECVVS  535
            + E+++++ A+I  I+++ EK+ +G W+K I F++P+    EE  ++ L+ +  VECV  
Sbjct  498  DVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPII---EENLNIGLDNDEQVECVSL  554

Query  536  MSRK  539
            + ++
Sbjct  555  LEKR  558

37) CK3_15360 in NC_021035


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  436 bits (1641),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 262/541 (49%), Positives = 385/541 (72%), Gaps = 8/541 (1%)

Query  1    MQVDGYSLDAQRDKLRKYAAYEDMVVAGEYSDEGFSGKNIQGRQEFQRMLNDIQDCKDGV  60
            +Q++GYSL+AQ+ +++ +A Y+D  + GEY D G S+K+I+GR +F+RM++DI+  KDGV
Sbjct  18   IQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGRIQFNRMMEDIKSGKDGV  77

Query  61   SYVLVFKLSRFGRNAADVLNSLQLMQDFGVNLICVEDGIDNSKDAGKLMISVLSAVAEIE  120
            S+VLVFKLSRF+RNAADVL++L++MQD+GVNLICVEDGID+SKDAGKLMISVLSAVAEIE
Sbjct  78   SFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIE  137

Query  121  RENIRTQTMAGREQKAREGKWNGGFAPYGYKLESGNLVIAEDEVEVIRVIYDRYIHTNEG  180
            RENI  QTM GR QKA EGKWNGGFAPYGYKLE G+L I E+E   IR I+D+Y++T  G
Sbjct  138  RENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIG  197

Query  181  VAGVAKYLNRNGFVKKLRKNNTIPEFSRNFVQDVLDNPVYMGKIAYGRRRTEKRQGTRNE  240
              G++KYL+ +G+ K  R+N   P F   +++ +L NPVY GKIA+GRR  EK +GTRNE
Sbjct  198  ANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLEKVHGTRNE  257

Query  241  MHVVEQSEFPVYDGQHEAIISEEDWYLAQEKRKINSFKREKVNNP--DHAHILSGILKCP  298
               VEQ E+ + +G HEAI+S+E W  AQ K K ++ K E VN+    ++H+LSGI+KCP
Sbjct  258  YKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCP  317

Query  299  CCGKSMYGN--IAKAHSKDKKTRYYYY-CKNTVTPTGHECSFRLNIEQTEINKFVAKVIS  355
             CG +M+GN  I K     K   +YYY C++     G+ C+F  +I +  ++  VA VI 
Sbjct  318  ICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFSKQIREELLDDAVAEVIV  377

Query  356  AMVSNPRFIEAIQAKIGTAVDTEDMEKQIAVLQGQLKQAFGTKSRLERQMDTLDINDAHY  415
             +VSNP+F   +Q KI   VDT ++EK+I   Q +L+++ +TK +L  ++D LD++D HY
Sbjct  378  KIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHY  437

Query  416  DRKILDLQRRYDEQYDTIEEIEVQIGELQSQIRSIQQEKISGDNIYRLLLAFDEVYYSAT  475
             R+  DL+ R    YD ++E+E  + + +++ ++I+ EK++GDNIY++L+ FD +Y    
Sbjct  438  KRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKLYKVMN  497

Query  476  EAEQKEFMKAFIERIEMFPEKRKDGSWIKKIVFNFPVPVDGEEVKELPLETETTVESVVK  535
            + E+++++ A+I  I+++ EK+ +G W+K I F++P+    EE  ++ L+ +  VE V  
Sbjct  498  DVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPII---EENLNIGLDNDEQVECVSL  554

Query  536  L  536
            L
Sbjct  555  L  555

38) Sinf_0428 in NC_016826


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  432 bits (1627),  Expect = 3e-122, Method: Compositional matrix adjust.
 Identities = 275/556 (50%), Positives = 415/556 (75%), Gaps = 7/556 (1%)

Query  5    KAYIYTRVSTNMQVEGFSLDAQETRIQQYANAFDIEIVKTYQDAGKSGKTMLGRTEFMAM  64
            K Y+YTRVST++Q+EG+SL+AQ +R++ +A   D EIV  Y+DAGKS+K++ GR +F  M
Sbjct  7    KVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGRIQFNRM  66

Query  65   ISDIEAEKDKVDYVLVFKLSCFGRNAADTLKSLAIMESHGVNLICVddgldsskdsgklV  124
            + DI + KD V +VLVFKLS F+RNAAD L +L IM+  GVNLICV+DG+DSSKD+GKL+
Sbjct  67   MEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSKDAGKLM  126

Query  125  ITILSAVAEMERENIISQAMEGRRQKARAGQWNGGFAPVGYSLVNGQLQVNHEEAESVKM  184
            I++LSAVAE+ERENI  Q+MEGR QKA  G+WNGGFAP GY L +G+L +N+EEA +++ 
Sbjct  127  ISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEEAVAIRT  186

Query  185  IFDLFANSDMGTIAIAKHLANLDIKKPIRQNSTLPYFSSSGIARILDNPVYNGKIAFGRR  244
            IFD + N+ +G+ +I+K L N +I+K  RQN+  P F ++ I +IL NPVYNGKIAFGRR
Sbjct  187  IFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRR  246

Query  245  ESTRDKVSG---ETKVKQSENYILTDGIHEAIIDDETWKKVRKKREANAHKYKRENPNKG  301
              T +KV G   E K  + ++Y++++GIHEAI+ DE W+  + K  ++A KY + N  K+
Sbjct  247  --TLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKD  304

Query  302  DSIYVLSGLIKCPLCNAGLYGNKSIkrnknkkdeyyknyyyyackHRKQVDGHKCTFNKQ  361
                +LSG++KCP+C  G++GNK I  +K+K +  YK++YYY+C+HR+ + G+KCTF+KQ
Sbjct  305  TRTHLLSGIVKCPICGVGMFGNKCI--KKKKDGTKYKDFYYYGCNHRQMIRGNKCTFSKQ  362

Query  362  LKTGNLDHEVLSIISKLVSRPGFARKLQEKINIQVDTSRIDSEIEQYKSLFRQLSATKMN  421
            ++   LD+ V  +I K+VS P FA  +QEKIN++VDTS I+ EI++Y+  +R+  +TK +
Sbjct  363  IREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTKFK  422

Query  422  LIQQIDSLNFEVPHFQQKSIDLDMRLNTIYDKIADVETLIETSESKREVILKDKMTADNI  481
            LI++ID+L+ E  H++++  DLD RL  +YDK+ ++E+ +  + +K++ I  +K+T+DNI
Sbjct  423  LIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGDNI  482

Query  482  YKILVNFASLMDVMEDIDKKRLCQMLIEKVEIYDDKNKAGRWVKAIHFKLPIIEEDLEIS  541
            YK+L+ F  L  VM+D+++++L   LI  +++Y++K+  G+W+K+I FKLPIIEE+L+I+
Sbjct  483  YKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLNIG  542

Query  542  LDNNTPVEAVVKLVKK  557
            LDN+  VE V  L K+
Sbjct  543  LDNDEQVECVSLLEKR  558

39) RBR_00340 in NC_021013


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  430 bits (1618),  Expect = 1e-121, Method: Compositional matrix adjust.
 Identities = 273/561 (49%), Positives = 406/561 (73%), Gaps = 8/561 (1%)

Query  1    MNREGKKCVLYTRVSTEMQVDGYSLEGQKNSLKRFADREEMEIVGIYEDAGKSGKSIEGR  60
            M++E  K  LYTRVST +Q++GYSLE+QK+ +K FA  ++ EIVG YEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   PAFKKMLSDIKNGLE-IDYILVYKLSRFGRNAADILNSLEFVQSYGINLICIEEGIDSSQ  119
              F++M+ DIK+G + + ++LV+KLSRF+RNAAD+L++L+++Q YG+NLIC+E+GIDSS+
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  120  TSGKLLISVLSAVAEIERENIIEQTMNGRREKARQGGWNGGFAPYGYYLKDNQLLieete  179
             +GKL+ISVLSAVAEIERENI  QTM+GR +KA +G WNGGFAPYGY L D +L+I+E E
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  180  aeairiiFDKFANSDVGLGGVAKYLNLQGIKKIPRQNGTLETWSSHFIRLILDNPVYCGK  239
            A AIR IFD++ N+ +G  G++KYL+ +GI+KIPRQNG      + +IR IL NPVY GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  240  IAYGRRTREKVKGTKNEYKQVHTDDYILEDGQHEGIVSEELWQKAHTKRMATGIK-QPSK  298
            IA+GRRT EKV GT+NEYKQV+ D+Y++ +G HE+IVS+E+WQ A+ K  + + K +  +
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  299  IGKD-RSHLLTGILKCPLCGSSMYTNK-HAWTNKDGTYKEVYYYICGRNKQERGHHCDYK  356
             GKD R+HLL+GI+KCP+CG +M+ NK     + +  YK+ YYY C + +  RG+ C + 
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  357  ASLRKTDIEPLVIEAVKELVSDKYFAKEIEKRIGVQTDTTAIDKELANYESKLKEVDLNK  416
              +R   ++  V E +  +VS+  FA  ++ +I ++ DT+ I+KE+ NY+  L+  +  K
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  417  ARLEREIDNLPIDARFRERKIHDMTLRLDGLYDTIVELEERIEDAKLRKSSIEMEAITLD  476
             +L  EIDNL ++ +   R+ +D+  RL  +YD + ELE  + DAK +K +IE E +T D
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  477  NIYKLMLNFGKLYDIISDEEKKSLITYLIKEIQIYPNGESEQP-LKSIEFNFPIYRDGQE  535
            NIYK+++ F+KLY +++D E++ LI+ LI EIQ+Y + +S+   LKSI F++PI  +  +
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  536  VRRLLWEKSNTVETVVLMSRK  556
            +     ++ + VE V L+ ++
Sbjct  541  IG---LDNDEQVECVSLLEKR  558

40) ROI_15030 in NC_021040


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  429 bits (1617),  Expect = 2e-121, Method: Compositional matrix adjust.
 Identities = 273/560 (49%), Positives = 404/560 (73%), Gaps = 8/560 (1%)

Query  1    MNREGKKCVLYPRVSTEMQVDGYSLEGQKNGLKRFADREEMEIVGIYEDAGKSGKSIEGR  60
            M++E  K  LY RVST +Q++GYSLE+QK+ +K FA  ++ EIVG YEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   PAFKKMLSDIKNGLE-IDYILVYKLSRFGRNAADILNSLEFVQSYGINLICIEEGIDSSQ  119
              F++M+ DIK+G + + ++LV+KLSRF+RNAAD+L++L+++Q YG+NLIC+E+GIDSS+
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  120  TSGKLLISVLSAVAEIERENIIEQTMNGRREKARQGGWNGGFAPYGYYLKDNQLLieete  179
             +GKL+ISVLSAVAEIERENI  QTM+GR +KA +G WNGGFAPYGY L D +L+I+E E
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  180  aeairiiFDKFANSDIGLGGVAKYLNLQGIKKIPRQNGTLETWSSHFIRLILDNPVYCGK  239
            A AIR IFD++ N+ IG  G++KYL+ +GI+KIPRQNG      + +IR IL NPVY GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  240  IAYGRRTREKVKGTKNEYKQVHAEDYILEDGQHEGIISEELWQKVHAKRMATGIK-QPSK  298
            IA+GRRT EKV GT+NEYKQV+ ++Y++ +G HE+I+S+E+WQ  + K  + + K +  +
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  299  IGKD-RSHLLTGILKCPLCGSSMYTNK-HAWTNKDGTYKEVYYYICGRNKQERGHHCDYK  356
             GKD R+HLL+GI+KCP+CG +M+ NK     + +  YK+ YYY C + +  RG+ C + 
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  357  ASLRKTDIEPLVIEAVKELVSDKYFAKEIEKRIGVQTDTTAIDKELANYESKLKEVDLNK  416
              +R   ++  V E +  +VS+  FA  ++ +I ++ DT+ I+KE+ NY+  L+  +  K
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  417  ARLEREIDNLPVDTRFRERKIHDMTLRLDALYDTIVELEERIEDAKLRKSSIEMETITLD  476
             +L  EIDNL V+ +   R+ +D+  RL  +YD + ELE  + DAK +K +IE E +T D
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  477  NIYKLMLNFGKLYDIISDEEKKSLITYLIKEIQIYPNGESEQP-LKSIEFNFPIYRDGQE  535
            NIYK+++ F+KLY +++D E++ LI+ LI EIQ+Y + +S+   LKSI F++PI  +  +
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  536  VRRLLWEKGNTVETVCLLSK  555
            +     ++++ VE V LL K
Sbjct  541  IG---LDNDEQVECVSLLEK  557

41) EC1_10040 in NC_021019


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  427 bits (1608),  Expect = 9e-121, Method: Compositional matrix adjust.
 Identities = 255/553 (47%), Positives = 396/553 (72%), Gaps = 10/553 (1%)

Query  10   LYPRVSTEMQVDGYSLEGQKNMLTRFADREEMIVVDTYEDAGKSGKSIEGRPAFQKMLRD  69
            LY RVST +Q++GYSLE+QK+ +  FA  ++  +V+ YEDAGKS+KSIEGR  F++M+ D
Sbjct  10   LYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGRIQFNRMMED  69

Query  70   IEDGLD-IDYILVYKLSRFGRNAADILNSLELVQSYGVNLICIEEGIDSSQTSGKLLISV  128
            I  G D + ++LV+KLSRF+RNAAD+L++L+++Q YGVNLIC+E+GIDSS+ +GKL+ISV
Sbjct  70   IKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSKDAGKLMISV  129

Query  129  LSAVAEIERENIIEQTMNGRREKARQGGWNGGFAPYGYTLEDNKLMIEETEAVAIRKIFE  188
            LSAVAEIERENI  QTM+GR +KA +G WNGGFAPYGY LED KL I+E EAVAIR IF+
Sbjct  130  LSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFD  189

Query  189  LYTSSEIGLGGIANQLNLQGIRKIPRQNGTLEDWTGHFIKLILDNPVYCGKIAYGRRTKE  248
             Y ++ IG  GI++ L+ +GIRKIPRQNG      + +I+ IL NPVY GKIA+GRRT E
Sbjct  190  QYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLE  249

Query  249  KVKGTKNDYQMKRNDDYILTEGQHKGIVSEEVWEKAHAKRLRTGVKQPSKIGRD---RVH  305
            KV GT+N+Y+   +D+Y+++EG H +IVS+EVW+ A+ K L++  K+   + ++   R H
Sbjct  250  KVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVK-LKSQAKKYEHVNKGKDTRTH  308

Query  306  LLSGLLKCPVCGSPMYTNK-HAWTNKDGTYKEIYYYVCSRNRMVRGKHCEYKAMLKKTDI  364
            LLSG++KCP+CG  M+ NK     + +  YK++YYY C++ +M+RG+ C +   ++   +
Sbjct  309  LLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFSKQIREELL  368

Query  365  EPMVIEAIREIVRNEEYAQAIKKRIGVQIDTKAVDKELEGYQAKLKEVDLNKTRLEREID  424
            +  V E I  IV N  +A  ++ +I +++DT  ++KE++ YQ  L+  +  K +L  EID
Sbjct  369  DDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEID  428

Query  425  SLPADAKYRERKLHDMTLRLDSLYDVIVELEEKIEDARLRRDAIKQQAITLENIYKIMVN  484
            +L  + K   R+ +D+  RL  +YD + ELE  + DA+ ++++I  + +T +NIYK+++ 
Sbjct  429  NLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIY  488

Query  485  FDCVYNIINDEEKRNVVTALIKEIEIYRNDESEYP-LKRIGLNFPVFKDGGEVTELLWDK  543
            FD +Y+++ND E+R++++ALI EI++Y + +S+   LK I +++P++ +  ++     D+
Sbjct  489  FDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLNIG---LDN  545

Query  544  GNTVESICVLTKR  556
            ++ VE + +L KR
Sbjct  546  DEQVECVSLLEKR  558

42) RHOM_10770 in NC_015977


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  425 bits (1601),  Expect = 3e-120, Method: Compositional matrix adjust.
 Identities = 273/559 (49%), Positives = 404/559 (73%), Gaps = 8/559 (1%)

Query  1    MNREGKKCVLYPRVSTEMQVDGYSLEGQKNSLKRFADREEMEIVGIYEDAGKSGKSIEGR  60
            M++E  K  LY RVST +Q++GYSLE+QK+ +K FA  ++ EIVG YEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   PAFKKMLSDIKNGLE-IDYILVYKLSRFGRNAADILNSLEFVQSYGINLICIEEGIDSSQ  119
              F++M+ DIK+G + + ++LV+KLSRF+RNAAD+L++L+++Q YG+NLIC+E+GIDSS+
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  120  TSGKLLISVLSAVAEIERENIIEQTMNGRREKARQGGWNGGFAPYGYYLKDNQLLieete  179
             +GKL+ISVLSAVAEIERENI  QTM+GR +KA +G WNGGFAPYGY L D +L+I+E E
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  180  aeairiiFDKFANSDIGLGGVAKYLNLQGIKKIPRQNGTLETWSSHFIRLILDNPVYCGK  239
            A AIR IFD++ N+ IG  G++KYL+ +GI+KIPRQNG      + +IR IL NPVY GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  240  IAYGRRTREKVKGTKNEYKQVHTDDYILEDGQHEGIVSEELWQKAYTKRMATGIK-QPSK  298
            IA+GRRT EKV GT+NEYKQV+ D+Y++ +G HE+IVS+E+WQ A  K  + + K +  +
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  299  IGKD-RSHLLTGILKCPICGSSMYTNK-HAWTNKDGTYKEVYYYICGRNKQERGHHCDYK  356
             GKD R+HLL+GI+KCPICG +M+ NK     + +  YK+ YYY C + +  RG+ C + 
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  357  ASLRKTDIEPLVIEAVKELVSDKYFAKEIEKRIGVQTDTTAIDKELANYESKLKEVDLNK  416
              +R   ++  V E +  +VS+  FA  ++ +I ++ DT+ I+KE+ NY+  L+  +  K
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  417  ARLEREIDNLPIDARFRERKIHDMTLRLDGLYDTIVELEERIEDAKLRRSSIEMEAITMD  476
             +L  EIDNL ++ +   R+ +D+  RL  +YD + ELE  + DAK ++ +IE E +T D
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  477  NIYKLMLNFGKLYDIISDEEKKSLITYLIKEIQIYPNGESEMP-LKSIEFNFPIYRDGQE  535
            NIYK+++ F+KLY +++D E++ LI+ LI EIQ+Y + +S+   LKSI F++PI  +  +
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  536  VRRLLWEKGNTVESVVLMQ  554
            +     ++++ VE V L++
Sbjct  541  IG---LDNDEQVECVSLLE  556

43) RTO_12950 in NC_021015


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  425 bits (1600),  Expect = 5e-120, Method: Compositional matrix adjust.
 Identities = 256/553 (47%), Positives = 397/553 (72%), Gaps = 10/553 (1%)

Query  10   LYPRVSTEMQVDGYSLEGQKNMLTRFADREEMIVVDTYEDAGKSGKSIEGRPAFQKMLRD  69
            LY RVST +Q++GYSLE+QK+ +  FA  ++  +V+ YEDAGKS+KSIEGR  F++M+ D
Sbjct  10   LYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGRIQFNRMMED  69

Query  70   IEDGLD-IDYILVYKLSRFGRNAADILNSLELVQSYGVNLICIEEGIDSSQTSGKLLISV  128
            I  G D + ++LV+KLSRF+RNAAD+L++L+++Q YGVNLIC+E+GIDSS+ +GKL+ISV
Sbjct  70   IKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSKDAGKLMISV  129

Query  129  LSAVAEIERENIIEQTMNGRREKARQGGWNGGFAPYGYTLEDNKLMIEETEAVAIRKIFE  188
            LSAVAEIERENI  QTM+GR +KA +G WNGGFAPYGY LED KL I+E EAVAIR IF+
Sbjct  130  LSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEEAVAIRTIFD  189

Query  189  LYTSSEIGLGGIANQLNLQGIRKIPRQNGTLEDWTGHFIKLILDNPVYCGKIAYGRRTKE  248
             Y ++ IG  GI++ L+ +GIRKIPRQNG      + +I+ IL NPVY GKIA+GRRT E
Sbjct  190  QYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGKIAFGRRTLE  249

Query  249  KVKGTKNDYQMKRNDDYILTEGQHKGIVSEEVWEKAHAKRLRTGVKQPSKIGRD---RVH  305
            KV GT+N+Y+   +D+Y+++EG H +IVS+EVW+ A+ K L++  K+   + ++   R H
Sbjct  250  KVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVK-LKSQAKKYEHVNKGKDTRTH  308

Query  306  LLSGLLKCPVCGSPMYTNK-HAWTNKDGTYKEIYYYVCSRNRMVRGKHCEYKAMLKKTDI  364
            LLSG++KCP+CG  M+ NK     + +  YK++YYY C++ +M+RG+ C +   ++   +
Sbjct  309  LLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFSKQIREELL  368

Query  365  EPMVIEAIREIVRNEEYAQAIKKRIGVQIDTKAVDKELEGYQAKLKEVDLNKTRLEREID  424
            +  V E I  IV N  +A  ++ +I +++DT  ++KE++ YQ  L+  +  K +L  EID
Sbjct  369  DDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTKFKLIEEID  428

Query  425  SLPVDAKYRERKLHDMTLRLDSLYDVIVELEEKIEDARLRRDAIKQQAITLENIYKIMVN  484
            +L V+ K   R+ +D+  RL  +YD + ELE  + DA+ ++++I  + +T +NIYK+++ 
Sbjct  429  NLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIY  488

Query  485  FDCVYNIINDEEKRNVVTALIKEIEIYRNDESEYP-LKRIGLNFPVFKDGGEVTELLWDK  543
            FD +Y+++ND E+R++++ALI EI++Y + +S+   LK I +++P++ +  ++     D+
Sbjct  489  FDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLNIG---LDN  545

Query  544  GNTVETVVLLSQQ  556
            ++ VE V LL ++
Sbjct  546  DEQVECVSLLEKR  558

44) RO1_43180 in NC_021012


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  412 bits (1550),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 267/559 (48%), Positives = 395/559 (71%), Gaps = 8/559 (1%)

Query  1    MNREGKKCVLYPRVSTEMQVDGYSLEGQKNGLKRFADREEMEIVGIYEDAGKSGKSIEGR  60
            M++E  K  LY RVST +Q++GYSLE+QK+ +K FA  ++ EIVG YEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   PAFKKMLSDIGNGLE-IDYILVYKLSRFGRNAADILNSLEYVQSYGVNLICIEEGIDSSQ  119
              F++M+ DI +G + + ++LV+KLSRF+RNAAD+L++L+ +Q YGVNLIC+E+GIDSS+
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  120  TSGKLLISVLSAVAEIERENIIEQTMNGRREKARQGGWNGGFAPYGYYLKDNQLLieese  179
             +GKL+ISVLSAVAEIERENI  QTM+GR +KA +G WNGGFAPYGY L D +L+I+E E
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  180  aaairiifeKFAGSDIGYGGIAKYLNLQGIKKIPRQNGTLENWSGHLVRQILDNPVYCGK  239
            A AIR IF+++  + IG  GI+KYL+ +GI+KIPRQNG      + L+R+IL NPVY GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  240  IAYGRRTREKVKGTKNEYKQVHAEDYILEDGQHEGIVSEELWQKVHAKRVATGIK--QPS  297
            IA+GRRT EKV GT+NEYKQV+ ++Y++ +G HE+IVS+E+WQ  + K  + + K  + +
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  298  KTGKDRSHLLTGVLKCPLCGSPMYTNK-HAWTNKDGTYKEVYYYICGRNKQERGHYCEYK  356
            K    R+HLL+G++KCP+CG  M+ NK     + +  YK+ YYY C + +  RG+ C + 
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  357  ASLRKTDIEPLVIEAIRELVSDKSFAKEIKKRFGVQTDTSKIDKELANYESKLKEVDLNK  416
              +R   ++  V E I  +VS+  FA  ++ ++ ++ DTS I+KE+ NY+  L+  +  K
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  417  ARLEREIDNLPADAKYRERKIHDMTIRLDGLYDTIVELEERIEDAKLRRSSIEMEAITLE  476
             +L  EIDNL  + K   R+ +D+  RL  +YD + ELE  + DAK ++ +IE E +T +
Sbjct  421  FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTGD  480

Query  477  NVYRIMENFSKLYAIISDEEKKSLVSYLIKEIQIYPNGTSDRI-LKSIEFNFPIYRDGRE  535
            N+Y+++  F KLY +++D E++ L+S LI EIQ+Y +  S+   LKSI F++PI  +  +
Sbjct  481  NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN  540

Query  536  IRKLLWENGNTVESVVLMQ  554
            I     +N++ VE V L++
Sbjct  541  IG---LDNDEQVECVSLLE  556

45) DCF50_p74 in NC_018867


> NC_003028_P1|11|G11|15900911|NP_345515.1|Streptococcus_pneumoniae_TIGR4|+|6429..8108|-|SP_1040|resolvase 
family site-specific 
recombinase
Length=559

 Score =  390 bits (1468),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 251/535 (47%), Positives = 390/535 (73%), Gaps = 7/535 (1%)

Query  1    MNRSGKKCVLYPRVSTEMQVDGFSLDGQKSNLRRFADREEMEIVNIYEDAGKSGKSIEGR  60
            M++   K  LY RVST +Q++G+SL++QKS ++ FA  ++ EIV  YEDAGKS+KSIEGR
Sbjct  1    MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSDKSIEGR  60

Query  61   PAFKQMLLDIENGLE-IDYVLVYKLSRFGRNAADILNSLEHIQAFGVNLICIEEGIDSSQ  119
              F++M+ DI +G + + +VLV+KLSRF+RNAAD+L++L+ +Q +GVNLIC+E+GIDSS+
Sbjct  61   IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK  120

Query  120  TSGKLLISVLSAVAEIERENIIEQTMNGRKEKARQGGWNGGFAPYGYFLKDKQLFIQEDE  179
             +GKL+ISVLSAVAEIERENI  QTM+GR +KA +G WNGGFAPYGY L D +LFI+E+E
Sbjct  121  DAGKLMISVLSAVAEIERENISIQTMEGRIQKAGEGKWNGGFAPYGYKLEDGKLFINEEE  180

Query  180  AEAVRIIFDKYLNGNMGFHKIANYLNLQGIQKVQRNNGTLSLWGTHFIRMIIDNPVYCGK  239
            A A+R IFD+Y+N  +G + I++YL+ +GI+K+ R+NG  +L ++ +IR I+ NPVY GK
Sbjct  181  AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK  240

Query  240  ISYGRRAREKVKGSKNEYKQVPQEDYIIAEGQHEAIISEELWNAAHEKRELTGVK-SPSK  298
            I++GRR+ EKV G++NEYKQV Q++Y+I+EG HEAI+S+E+W+AA+ K    + K    +
Sbjct  241  IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN  300

Query  299  IGRD-RAHLLSGILKCPKCGGPMYTNK-HAWTNKDGTYKEVYYYVCSKARAARGKTCEYT  356
             G+D R+HLLSGI+KCP CG  M+ NK     + +  YK+ YYY C+  +  RG+ C ++
Sbjct  301  KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGNKCTFS  360

Query  357  TMLKKTDIEPLVIEAIRELIQNQDFAGEIKSRIGKEIDTSNLNRELKNYESKLKETELNK  416
              ++   ++  V E I  ++ N  FA+ ++ +I   +DTS++++E+ NY+  L+ ++  K
Sbjct  361  KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK  420

Query  417  TRLENEIDSLP-EDVRFRERKIHDMTLRLDGLYDIIVELEEKIEDVLLRRKAVEQDAITL  475
             +L +EID+L  ED +++ RK +D+  RL  +YD + ELE  + D   +++++E + +T 
Sbjct  421  FKLIEEIDNLDVEDKHYKRRK-QDLDDRLYRMYDKLDELESSLIDAKAKKQTIEAEKLTG  479

Query  476  ENIYTLLANFDKVYDKISDeekkslisslikeieiFPCDEAELP-LKSILFNFPV  529
            +NIY +L  FDK+Y  ++D E++ LIS+LI EI+++   +++   LKSI F++P+
Sbjct  480  DNIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPI  534