Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of hrpO gene of EF514224

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Psyr_1212
( YP_234304.1 )

type III secretion protein HrpO

NC_007005
(Pseudomonas syringae B728a)

7e-61

2) hrpO
( NP_791226.1 )

type III secretion protein HrpO

NC_004578
(Pseudomonas syringae DC3000)

2e-47

3) hrpO
( YP_273548.1 )

type III secretion component protein HrpO

NC_005773
(Pseudomonas syringae 1448A)

5e-42

4) Pmen_0042
( YP_001185548.1 )

hypothetical protein

NC_009439
(Pseudomonas mendocina ymp)

4e-25

• Sequence Alignments

1) Psyr_1212 in NC_007005


> EF514224|11|G9|148562536|ABQ88355.1|Pseudomonas_syringae_pv._syringae_61|+|11176..11622|hrpO|-|HrpO
Length=148

 Score =  226 bits (841),  Expect = 7e-61, Method: Compositional matrix adjust.
 Identities = 142/148 (96%), Positives = 147/148 (99%), Gaps = 0/148 (0%)

Query  1    MDEPLEDDPQQVALQQVIGLLTPLRQHRQASAERAHRQAQLELKSMLDHLAETRASLNQE  60
            MDEPLEDDPQQVAL+QVIGLLTPLRQHRQASAERAHRQAQLELKS+LDHLAETRASLNQE
Sbjct  1    MDEPLEDDPQQVALHQVIGLLTPLRQHRQASAERAHRQAQLELKSILDHLAETRASLNQE  60

Query  61   RDNHKRRRESLSHAHLQKTLSLTDVDGWHEKERTMLDRLACIRQDVEQQQMRVAEQQALL  120
            R+NHKRRRESLSHAHLQ+TLSLTDVDGWHEKERTMLDRLA IRQDV+QQQMRVAEQQALL
Sbjct  61   RENHKRRRESLSHAHLQRTLSLTDVDGWHEKERTMLDRLAYIRQDVQQQQMRVAEQQALL  120

Query  121  EQKRLQAKASQRAVEKLACMEETLNEEG  148
            EQKRLQAKASQRAVEKLACMEETLNEEG
Sbjct  121  EQKRLQAKASQRAVEKLACMEETLNEEG  148

2) hrpO in NC_004578


> EF514224|11|G9|148562536|ABQ88355.1|Pseudomonas_syringae_pv._syringae_61|+|11176..11622|hrpO|-|HrpO
Length=148

 Score =  181 bits (672),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 125/148 (85%), Positives = 142/148 (96%), Gaps = 0/148 (0%)

Query  1    MDETLEEDPQREALEQVISLLTPLRQHRQASAERAHRQAQVELKSMLDHLSETRASLDQE  60
            MDE LE+DPQ+ AL+QVI+LLTPLRQHRQASAERAHRQAQ+ELKS+LDHL+ETRASL+QE
Sbjct  1    MDEPLEDDPQQVALHQVIGLLTPLRQHRQASAERAHRQAQLELKSILDHLAETRASLNQE  60

Query  61   RDNHKRRRESLSQDHLQKTISLNDVDRWHEKEKNMLDRLAFIrqdvqqqqlrvaeqqTLL  120
            R+NHKRRRESLS+ HLQ+T+SL DVD WHEKE+ MLDRLA+IRQDVQQQQ+RVAEQQ+LL
Sbjct  61   RENHKRRRESLSHAHLQRTLSLTDVDGWHEKERTMLDRLAYIRQDVQQQQMRVAEQQALL  120

Query  121  EHKRLQAKASQRAVEKLACMEETLNEEG  148
            E+KRLQAKASQRAVEKLACMEETLNEEG
Sbjct  121  EQKRLQAKASQRAVEKLACMEETLNEEG  148

3) hrpO in NC_005773


> EF514224|11|G9|148562536|ABQ88355.1|Pseudomonas_syringae_pv._syringae_61|+|11176..11622|hrpO|-|HrpO
Length=148

 Score =  163 bits (602),  Expect = 5e-42, Method: Compositional matrix adjust.
 Identities = 119/148 (81%), Positives = 138/148 (94%), Gaps = 0/148 (0%)

Query  1    MEDTLEDDPQRAALEQVISLLTPLRQHRQASAERAHRHAQVELKSMLDHLSKIRASLDQE  60
            M++ LEDDPQ+ AL+QVI+LLTPLRQHRQASAERAHR+AQ+ELKS+LDHL+  RASL+QE
Sbjct  1    MDEPLEDDPQQVALHQVIGLLTPLRQHRQASAERAHRQAQLELKSILDHLAETRASLNQE  60

Query  61   RDNHKRRREGLSQEHLEKTISPNDIDRWHEKEKHMLDRLACIrqdvqqqqlrvaeqqall  120
            R+NHKRRRE+LS+ HL++T+S  D+D WHEKE+ MLDRLA IRQDVQQQQ+RVAEQQALL
Sbjct  61   RENHKRRRESLSHAHLQRTLSLTDVDGWHEKERTMLDRLAYIRQDVQQQQMRVAEQQALL  120

Query  121  eqKRLQAKASQRAVEKLACMEETLNEEG  148
            EQKRLQAKASQRAVEKLACMEETLNEEG
Sbjct  121  EQKRLQAKASQRAVEKLACMEETLNEEG  148

4) Pmen_0042 in NC_009439


> EF514224|11|G9|148562536|ABQ88355.1|Pseudomonas_syringae_pv._syringae_61|+|11176..11622|hrpO|-|HrpO
Length=148

 Score =  107 bits (388),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 78/148 (53%), Positives = 114/148 (78%), Gaps = 0/148 (0%)

Query  1    MEDELEADPQRLALEQAIQVLRPLRQHRQASAERQQRQMQQTLASSRERLAETRERLGSe  60
            M++ LE DPQ++AL+Q I +L PLRQHRQASAER +RQ Q  L S  ++LAETR  L  E
Sbjct  1    MDEPLEDDPQQVALHQVIGLLTPLRQHRQASAERAHRQAQLELKSILDHLAETRASLNQE  60

Query  61   rqaqlarrealaqqHVDRCLSLDEVELWHNQERAMLDRLAHMRQDIHRQGLAIEqqqhql  120
            R+ +  RRE+L++ H++R LSL +V+ WH++ER+MLDRLA +RQD+++Q + + +QQ  L
Sbjct  61   RENHKRRRESLSHAHLQRTLSLTDVDGWHEKERTMLDRLAYIRQDVQQQQMRVAEQQALL  120

Query  121  qvmqaqAKAAQRAVEKLSCLAEAINDEN  148
            +  + QAKA+QRAVEKL+C+ E++N+E 
Sbjct  121  EQKRLQAKASQRAVEKLACMEETLNEEG  148