Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of tcpA gene of AF325733

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

• Sequence Alignments

1) tcpA in NC_012582


> AF325733|11|G11|13377519|AAK20755.1|Vibrio_cholerae_395|+|17447..18121|tcpA|-|toxin-coregulated 
pilin
Length=224

 Score =  296 bits (1110),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 204/204 (100%), Positives = 204/204 (100%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80

Query  81   NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL  140
            NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL
Sbjct  81   NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL  140

Query  141  TQAQCKTLITSVGDMFPYIAIKaggavaladlgdFENSAAAAETGVGVIKSIAPASKNLD  200
            TQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLD
Sbjct  141  TQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLD  200

Query  201  LTNITHVEKLCKGTAPFGVAFGNS  224
            LTNITHVEKLCKGTAPFGVAFGNS
Sbjct  201  LTNITHVEKLCKGTAPFGVAFGNS  224

2) tcpA in NC_009457


> AF325733|11|G11|13377519|AAK20755.1|Vibrio_cholerae_395|+|17447..18121|tcpA|-|toxin-coregulated 
pilin
Length=224

 Score =  296 bits (1110),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 204/204 (100%), Positives = 204/204 (100%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80

Query  81   NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL  140
            NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL
Sbjct  81   NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL  140

Query  141  TQAQCKTLITSVGDMFPYIAIKaggavaladlgdFENSAAAAETGVGVIKSIAPASKNLD  200
            TQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLD
Sbjct  141  TQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLD  200

Query  201  LTNITHVEKLCKGTAPFGVAFGNS  224
            LTNITHVEKLCKGTAPFGVAFGNS
Sbjct  201  LTNITHVEKLCKGTAPFGVAFGNS  224

3) O3Y_03850 in NC_016944


> AF325733|11|G11|13377519|AAK20755.1|Vibrio_cholerae_395|+|17447..18121|tcpA|-|toxin-coregulated 
pilin
Length=224

 Score =  272 bits (1018),  Expect = 7e-75, Method: Compositional matrix adjust.
 Identities = 166/204 (82%), Positives = 188/204 (93%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LNS+Q+A+TQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYPATA+A AA++L++GLVSLGK+S+DEAKNPF GT M IFSFPRN+AANKAFAI+V+GL
Sbjct  81   NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTL+TSVGDMFP+I +K G+  A+ADLGDFE S A A TG GVIKSIAP+S NL+
Sbjct  141  TQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLD  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LTNITHVEKLC GTAPF VAFGNS
Sbjct  201  LTNITHVEKLCKGTAPFGVAFGNS  224

4) tcpA in NC_012578


> AF325733|11|G11|13377519|AAK20755.1|Vibrio_cholerae_395|+|17447..18121|tcpA|-|toxin-coregulated 
pilin
Length=224

 Score =  272 bits (1018),  Expect = 7e-75, Method: Compositional matrix adjust.
 Identities = 166/204 (82%), Positives = 188/204 (93%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LNS+Q+A+TQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYPATA+A AA++L++GLVSLGK+S+DEAKNPF GT M IFSFPRN+AANKAFAI+V+GL
Sbjct  81   NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTL+TSVGDMFP+I +K G+  A+ADLGDFE S A A TG GVIKSIAP+S NL+
Sbjct  141  TQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLD  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LTNITHVEKLC GTAPF VAFGNS
Sbjct  201  LTNITHVEKLCKGTAPFGVAFGNS  224

5) VCD_003500 in NC_012668


> AF325733|11|G11|13377519|AAK20755.1|Vibrio_cholerae_395|+|17447..18121|tcpA|-|toxin-coregulated 
pilin
Length=224

 Score =  272 bits (1018),  Expect = 7e-75, Method: Compositional matrix adjust.
 Identities = 166/204 (82%), Positives = 188/204 (93%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LNS+Q+A+TQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYPATA+A AA++L++GLVSLGK+S+DEAKNPF GT M IFSFPRN+AANKAFAI+V+GL
Sbjct  81   NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTL+TSVGDMFP+I +K G+  A+ADLGDFE S A A TG GVIKSIAP+S NL+
Sbjct  141  TQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLD  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LTNITHVEKLC GTAPF VAFGNS
Sbjct  201  LTNITHVEKLCKGTAPFGVAFGNS  224

6) VC0828 in NC_002505


> AF325733|11|G11|13377519|AAK20755.1|Vibrio_cholerae_395|+|17447..18121|tcpA|-|toxin-coregulated 
pilin
Length=224

 Score =  272 bits (1018),  Expect = 7e-75, Method: Compositional matrix adjust.
 Identities = 166/204 (82%), Positives = 188/204 (93%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LNS+Q+A+TQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYPATA+A AA++L++GLVSLGK+S+DEAKNPF GT M IFSFPRN+AANKAFAI+V+GL
Sbjct  81   NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTL+TSVGDMFP+I +K G+  A+ADLGDFE S A A TG GVIKSIAP+S NL+
Sbjct  141  TQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLD  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LTNITHVEKLC GTAPF VAFGNS
Sbjct  201  LTNITHVEKLCKGTAPFGVAFGNS  224

7) tcpA in NC_016445


> AF325733|11|G11|13377519|AAK20755.1|Vibrio_cholerae_395|+|17447..18121|tcpA|-|toxin-coregulated 
pilin
Length=224

 Score =  267 bits (999),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 166/204 (82%), Positives = 189/204 (93%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LNS+Q+A+TQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80

Query  81   NYPatanasaatqlanGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYPATA+A+AA++L++GLVSLGK+S+DEAKNPF GT M IFSFPRN+AANKAFAI+V+GL
Sbjct  81   NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTL+TSVGDMFP+I +K G+  A+ADLGDFE S A A TG GVIKSIAP+S NL+
Sbjct  141  TQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLD  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LTNITHVEKLC GTAPF VAFGNS
Sbjct  201  LTNITHVEKLCKGTAPFGVAFGNS  224

8) tcpA in NC_006841


> AF325733|11|G11|13377519|AAK20755.1|Vibrio_cholerae_395|+|17447..18121|tcpA|-|toxin-coregulated 
pilin
Length=224

 Score =  164 bits (605),  Expect = 3e-42, Method: Compositional matrix adjust.
 Identities = 97/195 (50%), Positives = 142/195 (73%), Gaps = 5/195 (2%)

Query  6    QRGMTLLEVIIVLGIMGVISAGVVILAQRAIDNQNVSKLSQALNTIQTAMVQTYRSKQSY  65
            Q GMTLLEVIIVLGIMGV+SAGVV LAQRAID+QN++K +Q+LN+IQ A+ QTYR+  +Y
Sbjct  23   QEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLGNY  82

Query  66   PDVLQDAVKAKKLTDALVSMGRVTESDLINPFTGAPMLIFTAKDNKAANRGFAIKVSDLS  125
            P    DA  A KLT +LVS+G+++  +  NPF G+ M IF+   N AAN++FAI V +L+
Sbjct  83   PAT-ADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLT  141

Query  126  KDQCTSLISNSADLFSFIEVQNRGTAMAADF--YVDPDAT--KSVGVIKSTKGGAKTLDL  181
            + QC +LI++ +D+F++I ++  G+   AD+  + ++ A+   +VGVIKS   ++K LDL
Sbjct  142  QAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLDL  201

Query  182  TNLDHISALCGGPGA  196
            TN+ H+  LC G ++
Sbjct  202  TNITHVEKLCKGTAP  216