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PAthogenisity Island DataBase (PAI DB)

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Homologs of cI gene of NC_004631_P3

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SSPA2422
( YP_002143267.1 )

phage repressor protein cI

NC_011147
(Salmonella enterica AKU12601)

1e-85

100

2) cI
( YP_151778.1 )

phage repressor protein cI

NC_006511
(Salmonella enterica ATCC 9150)

1e-85

100

3) cI
( NP_458724.1 )

phage repressor protein cI

NC_003198
(Salmonella enterica CT18)

1e-85

100

4) STM2738
( NP_461665.1 )

hypothetical protein

NC_003197
(Salmonella enterica LT2)

1e-85

100

5) STMDT12_C27890
( YP_005248485.1 )

phage repressor protein cI

NC_016860
(Salmonella enterica T000240)

1e-85

100

6) cI
( NP_807931.1 )

phage repressor protein cI

NC_004631
(Salmonella enterica Ty2)

1e-85

100

7) TY21A_22090
( YP_007928578.1 )

phage repressor protein cI

NC_021176
(Salmonella enterica Ty21a)

1e-85

100

8) STU288_13850
( YP_007903861.1 )

phage repressor protein cI

NC_021151
(Salmonella enterica U288)

1e-85

100

9) P12B_c2751
( YP_006169762.1 )

phage repressor protein cI

NC_017663
(Escherichia coli P12b)

3e-81

10) I137_13140
( YP_008382039.1 )

phage repressor protein

NC_021984
(Salmonella enterica S06004)

2e-61

11) LF82_413
( YP_002557488.1 )

Phage repressor protein cI

NC_011993
(Escherichia coli LF82)

3e-61

12) ECENHK_17140
( YP_006579887.1 )

phage repressor protein cI

NC_018405
(Enterobacter cloacae ENHKU01)

8e-61

13) cI
( YP_002392495.1 )

phage regulatory protein cI

NC_011742
(Escherichia coli S88)

1e-60

14) cI
( YP_002398994.1 )

phage regulatory protein cI

NC_011745
(Escherichia coli ED1a)

2e-60

15) CFSAN001992_19755
( YP_007473663.1 )

phage repressor protein cI

NC_020307
(Salmonella enterica CFSAN001992)

5e-59

16) STM474_2861
( YP_005243709.1 )

phage repressor protein cI

NC_016857
(Salmonella enterica ST4/74)

5e-59

17) CTU_32530
( YP_003211616.1 )

hypothetical protein

NC_013282
(Cronobacter turicensis z3032)

8e-58

18) cI
( YP_005182604.1 )

bacteriophage repressor protein cI

NC_016810
(Salmonella enterica SL1344)

2e-52

19) XNC1_1180
( YP_003711456.1 )

hypothetical protein

NC_014228
(Xenorhabdus nematophila ATCC 19061)

3e-49

20) XBJ1_1395
( YP_003467315.1 )

hypothetical protein

NC_013892
(Xenorhabdus bovienii SS-2004)

7e-49

21) PAU_00024
( YP_003038863.1 )

similar to phage repressor protein ci

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

2e-48

22) plu0028
( NP_927404.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

2e-47

23) Dd586_0730
( YP_003332325.1 )

CI repressor

NC_013592
(Dickeya dadantii Ech586)

4e-28

• Sequence Alignments

1) SSPA2422 in NC_011147


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  309 bits (1157),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 210/210 (100%), Positives = 210/210 (100%), Gaps = 0/210 (0%)

Query  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60
            MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA
Sbjct  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60

Query  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120
            LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD
Sbjct  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120

Query  121  EIlldsrlldgdssnslFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180
            EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK
Sbjct  121  EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180

Query  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210
            IVVHQDETSFECSVDDIEAIGRAVKVIKSL
Sbjct  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210

2) cI in NC_006511


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  309 bits (1157),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 210/210 (100%), Positives = 210/210 (100%), Gaps = 0/210 (0%)

Query  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60
            MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA
Sbjct  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60

Query  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120
            LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD
Sbjct  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120

Query  121  EIlldsrlldgdssnslFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180
            EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK
Sbjct  121  EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180

Query  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210
            IVVHQDETSFECSVDDIEAIGRAVKVIKSL
Sbjct  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210

3) cI in NC_003198


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  309 bits (1157),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 210/210 (100%), Positives = 210/210 (100%), Gaps = 0/210 (0%)

Query  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60
            MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA
Sbjct  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60

Query  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120
            LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD
Sbjct  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120

Query  121  EIlldsrlldgdssnslFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180
            EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK
Sbjct  121  EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180

Query  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210
            IVVHQDETSFECSVDDIEAIGRAVKVIKSL
Sbjct  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210

4) STM2738 in NC_003197


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  309 bits (1157),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 210/210 (100%), Positives = 210/210 (100%), Gaps = 0/210 (0%)

Query  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60
            MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA
Sbjct  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60

Query  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120
            LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD
Sbjct  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120

Query  121  EIlldsrlldgdssnslFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180
            EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK
Sbjct  121  EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180

Query  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210
            IVVHQDETSFECSVDDIEAIGRAVKVIKSL
Sbjct  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210

5) STMDT12_C27890 in NC_016860


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  309 bits (1157),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 210/210 (100%), Positives = 210/210 (100%), Gaps = 0/210 (0%)

Query  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60
            MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA
Sbjct  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60

Query  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120
            LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD
Sbjct  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120

Query  121  EIlldsrlldgdssnslFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180
            EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK
Sbjct  121  EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180

Query  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210
            IVVHQDETSFECSVDDIEAIGRAVKVIKSL
Sbjct  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210

6) STU288_13850 in NC_021151


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  309 bits (1157),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 210/210 (100%), Positives = 210/210 (100%), Gaps = 0/210 (0%)

Query  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60
            MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA
Sbjct  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60

Query  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120
            LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD
Sbjct  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120

Query  121  EIlldsrlldgdssnslFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180
            EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK
Sbjct  121  EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180

Query  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210
            IVVHQDETSFECSVDDIEAIGRAVKVIKSL
Sbjct  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210

7) TY21A_22090 in NC_021176


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  309 bits (1157),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 210/210 (100%), Positives = 210/210 (100%), Gaps = 0/210 (0%)

Query  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60
            MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA
Sbjct  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60

Query  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120
            LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD
Sbjct  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120

Query  121  EIlldsrlldgdssnslFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180
            EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK
Sbjct  121  EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180

Query  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210
            IVVHQDETSFECSVDDIEAIGRAVKVIKSL
Sbjct  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210

8) cI in NC_004631


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  309 bits (1157),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 210/210 (100%), Positives = 210/210 (100%), Gaps = 0/210 (0%)

Query  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60
            MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA
Sbjct  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60

Query  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120
            LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD
Sbjct  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120

Query  121  EIlldsrlldgdssnslFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180
            EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK
Sbjct  121  EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180

Query  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210
            IVVHQDETSFECSVDDIEAIGRAVKVIKSL
Sbjct  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210

9) P12B_c2751 in NC_017663


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  294 bits (1102),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 195/210 (93%), Positives = 204/210 (98%), Gaps = 0/210 (0%)

Query  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60
            MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA
Sbjct  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60

Query  61   LETGASLLWLATGQGDMYACENEETNLKNEPPVTVRPLSKIVAPSIKRVELKNGELQPsd  120
            LETG SLLWLATGQGDMYACENEE NLKNE +VTVRPLSKIVAPSIK+VELKNGELQPSD
Sbjct  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120

Query  121  eilldsslldgdssNALFVKTANDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARIPGNK  180
            EILLDS LLDGDSSN+LFVKTA DSFVVDTSVKQVSNGFWLVDMDGVKSIVKIAR+PGNK
Sbjct  121  EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180

Query  181  IVVNQDDTSFECSVDDVEVVGRAVKVIKNL  210
            IVV+QD+TSFECSVDD+E +GRAVKVIK+L
Sbjct  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210

10) I137_13140 in NC_021984


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  228 bits (850),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 124/207 (60%), Positives = 168/207 (82%), Gaps = 0/207 (0%)

Query  4    IRMGSDTGGKAAIERLLAAYGFTTKQALSEHLNVSKSTMANRVLRDSFPADWIIQCALET  63
            I+ G+D+GG+ AI+RL+ AY F+++Q L EHL+VSKSTMANR LRDSFPA+W+IQCALET
Sbjct  4    IKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCALET  63

Query  64   GVSLLWLATGQGSMKGGSEPEKSSHNENKQAIKPLSKLITPSIPKGTLENGQLSIDEEIF  123
            G+SLLWLATGQG M +  + E++  NE   +++PLSK+++PSI    L NG+L   +EI+
Sbjct  64   GISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSDEIL  123

Query  124  LDHSILPADYEESMFLETPTDCYLIDKSVKQVSNGFWLINIDGMIIIAKIMRIPGNKIVV  183
            LD  +L +D  +S+F+ T+TD +++D SVKQVSNGFWL+++DG+  I KI R+PGNKIVV
Sbjct  124  LDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNKIVV  183

Query  184  NQDEASFECSADDVEVIGRAVKVIKSI  210
            +QDE+SFECS DD+E IGRAVKVIKS+
Sbjct  184  HQDETSFECSVDDIEAIGRAVKVIKSL  210

11) LF82_413 in NC_011993


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  228 bits (848),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 121/207 (59%), Positives = 168/207 (82%), Gaps = 0/207 (0%)

Query  4    IRMGSDTGGKAAIERLLEAYGFTTKQALSEHLNVSKSTMANRVLRDSFPADWIIQCALET  63
            I+ G+D+GG+ AI+RL+ AY F+++Q L EHL+VSKSTMANR LRDSFPA+W+IQCALET
Sbjct  4    IKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCALET  63

Query  64   GVSLLWLATGQGSMKGGAEPEKSSHNENKQAIKPLSKLITPAIPKGTLENGQLSIDEEIF  123
            G+SLLWLATGQG M +  + E++  NE   +++PLSK+++P+I    L NG+L   +EI+
Sbjct  64   GISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSDEIL  123

Query  124  LDHSILPADYEESMFLETPTDCYLIDKSIKQVSNGFWLINIDGMIIVAKIMRIPGNKIVV  183
            LD  +L +D  +S+F+ T+TD +++D S+KQVSNGFWL+++DG+  + KI R+PGNKIVV
Sbjct  124  LDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNKIVV  183

Query  184  NQDEASFECSTDDVEVIGRAVKVIKSI  210
            +QDE+SFECS DD+E IGRAVKVIKS+
Sbjct  184  HQDETSFECSVDDIEAIGRAVKVIKSL  210

12) ECENHK_17140 in NC_018405


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  226 bits (842),  Expect = 8e-61, Method: Compositional matrix adjust.
 Identities = 123/210 (59%), Positives = 170/210 (81%), Gaps = 0/210 (0%)

Query  1    MIQVKAGENTGGREAIHRLMAAYDFKSRQQLCDHLGASKSTMANRYLRDSFPAEWVIQCA  60
            M  +KAG+++GGR+AI+RL+ AY+F SRQQLC+HL  SKSTMANRYLRDSFPAEWVIQCA
Sbjct  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60

Query  61   LETGVSLLWLTTGQGEPGTKIDDKKSINFVNSGKVKPLSELVSPEIDKVNLMGGSLVEAG  120
            LETG+SLLWL+TGQG+  +  ++ ++++   S  V+PLS +V+P I  V+L  G L  ++
Sbjct  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120

Query  121  KAIIDSSLLPSDSRELLLVNTAGDSYLVDRTQAPPVNGMWLVDIDGIKSIVKLTRLPGNR  180
              ++DS LL +DS + L+V+TA DS++VD +     NG WLVD+DG+KSIVK++R+PGN+
Sbjct  121  EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180

Query  181  LVVHQDDSSFECSLDDIEVVGRALKIIKSL  210
            +VVHQD++SFECS+DDIE +GRA+K+IKSL
Sbjct  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210

13) cI in NC_011742


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  225 bits (839),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 124/207 (60%), Positives = 166/207 (81%), Gaps = 0/207 (0%)

Query  4    IRMGSDTGGKAAIERLLEAYGFTTKQALSEHLNVSKSTMANRVLRDSFPADWIIQCALET  63
            I+ G+D+GG+ AI+RL+ AY F+++Q L EHL+VSKSTMANR LRDSFPA+W+IQCALET
Sbjct  4    IKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCALET  63

Query  64   GVSLLWLATGQGSMKEGYESEKRSHNENKQAIKPLSKLITPSIPKGTLENGQLSIDEEIF  123
            G+SLLWLATGQG M    + E+   NE   +++PLSK+++PSI    L NG+L   +EI+
Sbjct  64   GISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSDEIL  123

Query  124  LDHSILPADYEESMFLETPTDCYLIDKSVKQVSNGFWLINIDGMIIIAKIMRIPGNKIVV  183
            LD  +L +D  +S+F+ T+TD +++D SVKQVSNGFWL+++DG+  I KI R+PGNKIVV
Sbjct  124  LDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNKIVV  183

Query  184  NQDEASFECSADDVEVIGRAVKVIKSI  210
            +QDE+SFECS DD+E IGRAVKVIKS+
Sbjct  184  HQDETSFECSVDDIEAIGRAVKVIKSL  210

14) cI in NC_011745


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  225 bits (838),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 124/207 (60%), Positives = 166/207 (81%), Gaps = 0/207 (0%)

Query  4    IRMGSDTGGKAAIERLLEAYGFTTKQALSEHLNVSKSTMANRVLRDSFPADWIIQCALET  63
            I+ G+D+GG+ AI+RL+ AY F+++Q L EHL+VSKSTMANR LRDSFPA+W+IQCALET
Sbjct  4    IKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCALET  63

Query  64   GVSLLWLATGQGSMKEGYEPEKRSHNENKQAIKPLSKLITPSIPKGTLENGQLSIDEEIF  123
            G+SLLWLATGQG M    + E+   NE   +++PLSK+++PSI    L NG+L   +EI+
Sbjct  64   GISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSDEIL  123

Query  124  LDHSILPADYEESMFLETPTDCYLIDKSVKQVSNGFWLINIDGMIIIAKIMRIPGNKIVV  183
            LD  +L +D  +S+F+ T+TD +++D SVKQVSNGFWL+++DG+  I KI R+PGNKIVV
Sbjct  124  LDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNKIVV  183

Query  184  NQDEASFECSADDVEVIGRAVKVIKSI  210
            +QDE+SFECS DD+E IGRAVKVIKS+
Sbjct  184  HQDETSFECSVDDIEAIGRAVKVIKSL  210

15) CFSAN001992_19755 in NC_020307


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  220 bits (820),  Expect = 5e-59, Method: Compositional matrix adjust.
 Identities = 120/210 (58%), Positives = 165/210 (79%), Gaps = 0/210 (0%)

Query  1    MIQVKAGENTGGREAIHRLMAAYNFKSRQQLCDHLGASKSTMANRYLRDSFPAEWVIQCA  60
            M  +KAG+++GGR+AI+RL+ AYNF SRQQLC+HL  SKSTMANRYLRDSFPAEWVIQCA
Sbjct  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60

Query  61   LETGVSLLWLTTGQGDPGSNIDPKKDINLVNSSKVKPLSELVSPEIDKAILSGGSLAEGG  120
            LETG+SLLWL+TGQGD  +  +  ++++   S  V+PLS +V+P I    L  G L  ++
Sbjct  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120

Query  121  KAVIDSSLIPSGADDLLLVNTDSDSYLVDRSQTLPVNGMWLVDIDGIKSIVKLTRLPGNR  180
              ++DS L+ +++ + L+V+T +DS++VD S     NG WLVD+DG+KSIVK++R+PGN+
Sbjct  121  EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180

Query  181  LVVHQDESSFECSLSDIAVVGRALKIIKSL  210
            +VVHQDE+SFECS+ DI  +GRA+K+IKSL
Sbjct  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210

16) STM474_2861 in NC_016857


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  220 bits (820),  Expect = 5e-59, Method: Compositional matrix adjust.
 Identities = 120/210 (58%), Positives = 165/210 (79%), Gaps = 0/210 (0%)

Query  1    MIQVKAGENTGGREAIHRLMAAYNFKSRQQLCDHLGASKSTMANRYLRDSFPAEWVIQCA  60
            M  +KAG+++GGR+AI+RL+ AYNF SRQQLC+HL  SKSTMANRYLRDSFPAEWVIQCA
Sbjct  1    MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCA  60

Query  61   LETGVSLLWLTTGQGDPGSNIDPKKDINLVNSSKVKPLSELVSPEIDKAILSGGSLAEGG  120
            LETG+SLLWL+TGQGD  +  +  ++++   S  V+PLS +V+P I    L  G L  ++
Sbjct  61   LETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSD  120

Query  121  KAVIDSSLIPSGADDLLLVNTDSDSYLVDRSQTLPVNGMWLVDIDGIKSIVKLTRLPGNR  180
              ++DS L+ +++ + L+V+T +DS++VD S     NG WLVD+DG+KSIVK++R+PGN+
Sbjct  121  EILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNK  180

Query  181  LVVHQDESSFECSLSDIAVVGRALKIIKSL  210
            +VVHQDE+SFECS+ DI  +GRA+K+IKSL
Sbjct  181  IVVHQDETSFECSVDDIEAIGRAVKVIKSL  210

17) CTU_32530 in NC_013282


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  216 bits (804),  Expect = 8e-58, Method: Compositional matrix adjust.
 Identities = 124/207 (60%), Positives = 159/207 (77%), Gaps = 3/207 (1%)

Query  1    MKVGNDSGGRDAINRLIKAYNFSSRQQLCDHLSVSKSTMANRYLRDSFPAEWVIQCALET  60
            +K GNDSGGRDAINRLIKAYNFSSRQQLC+HL VSKSTMANRYLRDSFPAEWVIQCALET
Sbjct  4    IKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCALET  63

Query  61   GVSLLWLATGQGDK---SDKKPSTDYVNSADIRNLSEVVAPEIDKVKLHGGALVEDGKVI  117
            G+SLLWLATGQGD     +   +     S  +R LS +VAP I  V L  G L   + ++
Sbjct  64   GISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSDEIL  123

Query  118  LDSSLIPKDIIDPLLVSAEDSFYLIDHSVTPPVNGLWLVDIDGIKSIAKLTRLPGNRLVV  177
            LDS L+  D  ++L+V +    +++D SV    NG+WLVD+DG+KSI K++R+PGN++VV
Sbjct  124  LDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNKIVV  183

Query  178  TQGESSFECSLDEIDVMGRAVRMIKSI  204
             Q+E+SFECS+D+I+ +GRAV++IKS+
Sbjct  184  HQDETSFECSVDDIEAIGRAVKVIKSL  210

18) cI in NC_016810


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  198 bits (736),  Expect = 2e-52, Method: Compositional matrix adjust.
 Identities = 109/191 (58%), Positives = 148/191 (78%), Gaps = 0/191 (0%)

Query  1    MAAYNFKSRQQLCDHLGASKSTMANRYLRDSFPAEWVIQCALETGVSLLWLTTGQGDPGS  60
            + AYNF SRQQLC+HL  SKSTMANRYLRDSFPAEWVIQCALETG+SLLWL+TGQGD  +
Sbjct  20   IKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCALETGISLLWLATGQGDMYA  79

Query  61   NIDPKKDINLVNSSKVKPLSELVSPEIDKAILSGGSLAEGGKAVIDSSLIPSGADDLLLV  120
              +  ++++   S  V+PLS +V+P I    L  G L  ++  ++DS L+ +++ + L+V
Sbjct  80   CENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSDEILLDSRLLDGDSSNSLFV  139

Query  121  NTDSDSYLVDRSQTLPVNGMWLVDIDGIKSIVKLTRLPGNRLVVHQDESSFECSLSDIAV  180
            +T +DS++VD S     NG WLVD+DG+KSIVK++R+PGN++VVHQDE+SFECS+ DI  
Sbjct  140  KTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNKIVVHQDETSFECSVDDIEA  199

Query  181  VGRALKIIKSL  191
            +GRA+K+IKSL
Sbjct  200  IGRAVKVIKSL  210

19) XNC1_1180 in NC_014228


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  188 bits (696),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 101/204 (50%), Positives = 147/204 (73%), Gaps = 9/204 (4%)

Query  8    IKMGSDSGGRPAIERLVRAYGFKSRQALSDHLGVSKSTMANRYLRDSFPADWIIQCNLET  67
            IK G+DSGGR AI+RL++AY F SRQ L +HL VSKSTMANRYLRDSFPA+W+IQC LET
Sbjct  4    IKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCALET  63

Query  68   GASLLWLSTGQGEMFP--------DGESGKTER-LEDIIAPSVSRVKLSGGKLNEATPVI  118
            G SLLWL+TGQG+M++          E++ T R L  I+APS+ +V L  G L+ +  ++
Sbjct  64   GISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSDEIL  123

Query  119  LDSELISKELRNPLVVDDGTAWYLLDTQEDNIQDGLWLVDIEGMHSVKKIAKIPISKIRV  178
            LDS L+  +  N+L V  +T  +++DT   ++ +G+WLVD++G+ S+ KIA++P +KI V
Sbjct  124  LDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNKIVV  183

Query  179  SDNDVTFDCAISDIQFIGRVALVI  202
             +++ +F+C++ DI+ IGR   VI
Sbjct  184  HQDETSFECSVDDIEAIGRAVKVI  207

20) XBJ1_1395 in NC_013892


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  187 bits (692),  Expect = 7e-49, Method: Compositional matrix adjust.
 Identities = 101/201 (51%), Positives = 146/201 (73%), Gaps = 9/201 (4%)

Query  2    GADSGGRPAIERLVRAYGFKSRQALSDHLGVSKSTMANRYLRDSFPADWIIQCNLETGAS  61
            G DSGGR AI+RL++AY F SRQ L +HL VSKSTMANRYLRDSFPA+W+IQC LETG S
Sbjct  7    GNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCALETGIS  66

Query  62   LLWLSTGQGEMFS--------DGESGKTER-LEDIIAPSIPRIKLSGGKLNEANPVILDS  112
            LLWL+TGQG+M++          E++ T R L  I+APSI ++ L  G L+ ++ ++LDS
Sbjct  67   LLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSDEILLDS  126

Query  113  ELISKELNNPLVVDDGVTWYLLDAQGDNIQDGLWLVDIEGMHSIKRIAKIPVSKIRVSDD  172
             L+  + +N+L V  +   +++D+   ++ +G+WLVD++G+ SI +IA++P +KI V +D
Sbjct  127  RLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNKIVVHQD  186

Query  173  DVTFDCSVSDIQFIGRVVLVI  193
            + +F+CSV DI+ IGR V VI
Sbjct  187  ETSFECSVDDIEAIGRAVKVI  207

21) PAU_00024 in NC_012962


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  185 bits (686),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 91/199 (46%), Positives = 145/199 (73%), Gaps = 10/199 (5%)

Query  8    IKMGADSGGKQAIERLVSAYGFKSRQALSDHLGVSKSTMANRYLRDSFPADWVIQCNLET  67
            IK G DSGG++AI+RL+ AY F SRQ L +HL VSKSTMANRYLRDSFPA+WVIQC LET
Sbjct  4    IKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCALET  63

Query  68   NASLLWLSTGQGEMFPDGEKKRE----------SLENIITPTIQRVKLVGGKLNADNPVT  117
              SLLWL+TGQG+M++  +  R+          +L +I++P+I++V L  G L++ + + 
Sbjct  64   GISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSDEIL  123

Query  118  LDNQLIAKEIKKPLIIDNNDTWYLLDTAEPDVQDGLWLIDIEGMHSIKKITKIPVGKIRV  177
            LD++L+  +  ++L++      +++DT+  +V +G+WL+D++G+ SI KI+++P  KI V
Sbjct  124  LDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNKIVV  183

Query  178  YDNDVTFDCAIDEINFIGR  196
             +++ +F+C++D+I+ IGR
Sbjct  184  HQDETSFECSVDDIEAIGR  202

22) plu0028 in NC_005126


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  181 bits (672),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 93/199 (47%), Positives = 145/199 (73%), Gaps = 10/199 (5%)

Query  8    IKMGADSGGKQAIERLVSAYGFKSRQALSDHLGVSKSTMANRYLRDSFPADWVIQCNLET  67
            IK G DSGG++AI+RL+ AY F SRQ L +HL VSKSTMANRYLRDSFPA+WVIQC LET
Sbjct  4    IKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCALET  63

Query  68   NASLLWLSTGQGEMFP----DREKKKES------LKNIITPKIQRVKLVGGKLSDDDPVI  117
              SLLWL+TGQG+M++    +R+ K+E+      L +I++P I++V L  G L   D ++
Sbjct  64   GISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSDEIL  123

Query  118  LDNQLIARKIKKPLIIDNNNTWYLLDTEEHDVQDGLWLIDIEGMHSIKKITKIPVSKIRV  177
            LD++L+     ++L++      +++DT   +V +G+WL+D++G+ SI KI+++P +KI V
Sbjct  124  LDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNKIVV  183

Query  178  CDNDVTFDCAINEINFIGR  196
             +++ +F+C++++I+ IGR
Sbjct  184  HQDETSFECSVDDIEAIGR  202

23) Dd586_0730 in NC_013592


> NC_004631_P3|109|G102|29144589|NP_807931.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|94894..95526|cI|t4337|phage 
repressor protein cI
Length=210

 Score =  117 bits (428),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 71/175 (41%), Positives = 112/175 (64%), Gaps = 18/175 (10%)

Query  4    GTGAKAAIERLVEAYGFKNRQALCDHLGVSKSTLANRYMRDSFPADWVIQAALETGVSLR  63
            ++G++ AI+RL+ AY F +RQ LC+HL VSKST+ANRY+RDSFPA+WVIQ ALETG+SL 
Sbjct  9    DSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCALETGISLL  68

Query  64   WLATGEGPKF---DDARN-----DVIAIPRQKLI----------DGKLYDSNYYMFDKAF  105
            WLATG+G  +   ++ RN      V   P  K++          +G L  S+  ++D  +
Sbjct  69   WLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSDEILLDSRL  128

Query  106  LSDGLKDPVVILDGDITYIADRQFDEVVDGKWLVEIEGQTSIRDLARIPVEKIRV  160
            L ++  +++ +  +  +++ D    +V +G WLV+++G  SI  +AR+P +KI V
Sbjct  129  LDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNKIVV  183