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PAthogenisity Island DataBase (PAI DB)

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Homologs of unnamed gene of EF611301

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) PADK2_23730
( YP_006484711.1 )

DNA binding protein

NC_018080
(Pseudomonas aeruginosa DK2)

1e-33

2) PA14_59060
( YP_792903.1 )

hypothetical protein

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

5e-28

3) PSPA7_4453
( YP_001349803.1 )

putative DNA binding protein

NC_009656
(Pseudomonas aeruginosa PA7)

2e-24

4) G655_23410
( YP_007711520.1 )

putative DNA binding protein

NC_020912
(Pseudomonas aeruginosa B136-33)

2e-19

5) M062_05300
( YP_008131509.1 )

DNA-binding protein

NC_021577
(Pseudomonas aeruginosa RP73)

2e-19

• Sequence Alignments

1) PADK2_23730 in NC_018080


> EF611301|108|G108|148807375|ABR13449.1|Pseudomonas_aeruginosa_PSE9|-|91406..91675|-|-|putative 
DNA binding protein
Length=89

 Score =  135 bits (497),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 86/89 (97%), Positives = 87/89 (98%), Gaps = 0/89 (0%)

Query  1   MKNVTSIDRKHAEDKFVVRMPQGLRDQLKQKAADNHRSANSEIVYRLERSNALEEELARA  60
           MKNVTSI RKHAEDKFVVRMPQGLRDQLKQKAA+NHRSANSEIVYRLERSNALEEELARA
Sbjct  1   MKNVTSISRKHAEDKFVVRMPQGLRDQLKQKAAHNHRSANSEIVYRLERSNALEEELARA  60

Query  61  NRMVDELFAKNQRLQAELAAANTPQVAEA  89
           NRMVDELFAKNQRLQAELAAANT QVAEA
Sbjct  61  NRMVDELFAKNQRLQAELAAANTRQVAEA  89

2) PA14_59060 in NC_008463


> EF611301|108|G108|148807375|ABR13449.1|Pseudomonas_aeruginosa_PSE9|-|91406..91675|-|-|putative 
DNA binding protein
Length=89

 Score =  116 bits (425),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 74/80 (93%), Positives = 78/80 (98%), Gaps = 0/80 (0%)

Query  5   RETEDKFVVRMPLGLRDQLKQKAADNHRSANSEIVYRLERSNALEEELARANRMVDELFA  64
           +++EDKFVVRMP GLRDQLKQKAA+NHRSANSEIVYRLERSNALEEELARANRMVDELFA
Sbjct  10  KHAEDKFVVRMPQGLRDQLKQKAAHNHRSANSEIVYRLERSNALEEELARANRMVDELFA  69

Query  65  KNQRLQAELAAANTPQVAEA  84
           KNQRLQAELAAANT QVAEA
Sbjct  70  KNQRLQAELAAANTRQVAEA  89

3) PSPA7_4453 in NC_009656


> EF611301|108|G108|148807375|ABR13449.1|Pseudomonas_aeruginosa_PSE9|-|91406..91675|-|-|putative 
DNA binding protein
Length=89

 Score =  104 bits (379),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 85/89 (96%), Positives = 87/89 (98%), Gaps = 0/89 (0%)

Query  1   MKNVTSISRKHAEDKFVVRMPQGLRDQLKQKAAHNHRSANSEIVYrlersneleeelara  60
           MKNVTSISRKHAEDKFVVRMPQGLRDQLKQKAAHNHRSANSEIVYRLERSN LEEELARA
Sbjct  1   MKNVTSISRKHAEDKFVVRMPQGLRDQLKQKAAHNHRSANSEIVYRLERSNALEEELARA  60

Query  61  nrMVDELLAKNQRLQAELAAANAPQVAEA  89
           NRMVDEL+AKNQRLQAELAAAN+ QVAEA
Sbjct  61  NRMVDELFAKNQRLQAELAAANTRQVAEA  89

4) G655_23410 in NC_020912


> EF611301|108|G108|148807375|ABR13449.1|Pseudomonas_aeruginosa_PSE9|-|91406..91675|-|-|putative 
DNA binding protein
Length=89

 Score = 88.6 bits (317),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 74/80 (93%), Positives = 77/80 (97%), Gaps = 0/80 (0%)

Query  3   RETEDKFVVRMPLGLRDQLKQKAAHNHRSANSEIVYrlersneleeelaranrMVDELFA  62
           +++EDKFVVRMP GLRDQLKQKAAHNHRSANSEIVYRLERSN LEEELARANRMVDELFA
Sbjct  10  KHAEDKFVVRMPQGLRDQLKQKAAHNHRSANSEIVYRLERSNALEEELARANRMVDELFA  69

Query  63  KNQRLQAELAAANTPQVAEA  82
           KNQRLQAELAAANT QVAEA
Sbjct  70  KNQRLQAELAAANTRQVAEA  89

5) M062_05300 in NC_021577


> EF611301|108|G108|148807375|ABR13449.1|Pseudomonas_aeruginosa_PSE9|-|91406..91675|-|-|putative 
DNA binding protein
Length=89

 Score = 88.6 bits (317),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 74/80 (93%), Positives = 77/80 (97%), Gaps = 0/80 (0%)

Query  3   RETEDKFVVRMPLGLRDQLKQKAAHNHRSANSEIVYrlersneleeelaranrMVDELFA  62
           +++EDKFVVRMP GLRDQLKQKAAHNHRSANSEIVYRLERSN LEEELARANRMVDELFA
Sbjct  10  KHAEDKFVVRMPQGLRDQLKQKAAHNHRSANSEIVYRLERSNALEEELARANRMVDELFA  69

Query  63  KNQRLQAELAAANTPQVAEA  82
           KNQRLQAELAAANT QVAEA
Sbjct  70  KNQRLQAELAAANTRQVAEA  89