Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of STY4626 gene of NC_003198_P9

160

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SSPA2404
( YP_002143249.1 )

capsid protein

NC_011147
(Salmonella enterica AKU12601)

2e-125

100

2) SPA2581
( YP_151760.1 )

capsid protein

NC_006511
(Salmonella enterica ATCC 9150)

2e-125

100

3) STY4626
( NP_458708.1 )

putative capsid protein

NC_003198
(Salmonella enterica CT18)

2e-125

100

4) STBHUCCB_45750
( YP_005219993.1 )

Capsid scaffold-like protein

NC_016832
(Salmonella enterica P-stx-12)

2e-125

100

5) t4320
( NP_807915.1 )

capsid protein

NC_004631
(Salmonella enterica Ty2)

2e-125

100

6) TY21A_22005
( YP_007928561.1 )

putative capsid protein

NC_021176
(Salmonella enterica Ty21a)

2e-125

100

7) UMN798_2941
( YP_005398091.1 )

capsid protein

NC_017046
(Salmonella enterica 798)

2e-124

8) SL1344_2692
( YP_005182588.1 )

putative capsid protein

NC_016810
(Salmonella enterica SL1344)

2e-124

9) STM474_2844
( YP_005243693.1 )

putative capsid protein

NC_016857
(Salmonella enterica ST4/74)

2e-124

10) STM2721
( NP_461649.1 )

capsid scaffold-like protein

NC_003197
(Salmonella enterica LT2)

1e-115

11) STMDT12_C27730
( YP_005248469.1 )

capsid scaffold-like protein

NC_016860
(Salmonella enterica T000240)

1e-115

12) STU288_13770
( YP_007903845.1 )

capsid scaffold-like protein

NC_021151
(Salmonella enterica U288)

1e-115

13) ECL_04425
( YP_003614903.1 )

capsid scaffold-like protein

NC_014121
(Enterobacter cloacae ATCC 13047)

5e-113

14) SeD_A3049
( YP_002216725.1 )

phage capsid scaffolding protein

NC_011205
(Salmonella enterica CT_02021853)

3e-112

15) SeAg_B2867
( YP_002147653.1 )

phage capsid scaffolding protein

NC_011149
(Salmonella enterica SL483)

2e-111

16) O
( YP_002398976.1 )

putative capsid scaffolding protein GpO

NC_011745
(Escherichia coli ED1a)

4e-106

17) CE10_1743
( YP_006143825.1 )

putative capsid scaffolding protein GpO

NC_017646
(Escherichia coli CE10)

6e-106

18) O
( YP_002407798.1 )

putative capsid scaffolding protein GpO

NC_011750
(Escherichia coli IAI39)

6e-106

19) EcHS_A0925
( YP_001457662.1 )

phage capsid scaffolding protein

NC_009800
(Escherichia coli HS)

8e-106

20) EKO11_3020
( YP_005278671.1 )

capsid scaffolding

NC_016902
(Escherichia coli KO11FL)

8e-106

21) KO11_19440
( YP_006166206.1 )

Presumed capsid scaffolding protein (GpO)

NC_017660
(Escherichia coli KO11FL)

8e-106

22) P12B_c2740
( YP_006169752.1 )

Phage capsid scaffolding protein

NC_017663
(Escherichia coli P12b)

8e-106

23) UMNK88_909
( YP_006132698.1 )

hypothetical protein

NC_017641
(Escherichia coli UMNK88)

8e-106

24) ECW_m0923
( YP_006123672.1 )

capsid scaffolding

NC_017635
(Escherichia coli W)

8e-106

25) WFL_04495
( YP_006172349.1 )

Presumed capsid scaffolding protein (GpO)

NC_017664
(Escherichia coli W)

8e-106

26) CFSAN001992_19840
( YP_007473680.1 )

Presumed capsid scaffolding protein (GpO)

NC_020307
(Salmonella enterica CFSAN001992)

9e-106

27) SBO_0759
( YP_407260.1 )

capsid scaffolding protein

NC_007613
(Shigella boydii Sb227)

4e-105

28) O
( YP_002392479.1 )

Presumed capsid scaffolding protein (GpO)

NC_011742
(Escherichia coli S88)

1e-104

29) EbC_10910
( YP_003740475.1 )

capsid scaffolding protein

NC_014306
(Erwinia billingiae Eb661)

9e-105

30) KPR_4553
( YP_007993527.1 )

hypothetical protein

NC_021232
(Klebsiella pneumoniae SB3432)

6e-101

31) EcolC_2776
( YP_001725731.1 )

capsid scaffolding

NC_010468
(Escherichia coli ATCC 8739)

2e-100

32) I137_13055
( YP_008382023.1 )

hypothetical protein

NC_021984
(Salmonella enterica S06004)

6e-100

33) Pat9b_3433
( YP_004117282.1 )

capsid scaffolding

NC_014837
(Pantoea sp. At-9b)

2e-99

34) E2348C_0818
( YP_002328384.1 )

capsid scaffolding protein

NC_011601
(Escherichia coli E2348/69)

4e-99

35) STY3676
( NP_457867.1 )

putative capsid scaffolding protein

NC_003198
(Salmonella enterica CT18)

8e-99

36) STBHUCCB_36000
( YP_005219073.1 )

Capsid scaffold-like protein

NC_016832
(Salmonella enterica P-stx-12)

8e-99

37) t3418
( NP_807081.1 )

capsid scaffolding protein

NC_004631
(Salmonella enterica Ty2)

8e-99

38) TY21A_17295
( YP_007927671.1 )

putative capsid scaffolding protein

NC_021176
(Salmonella enterica Ty21a)

8e-99

39) LF82_403
( YP_002557478.1 )

capsid scaffolding protein

NC_011993
(Escherichia coli LF82)

2e-98

40) c0950
( NP_752880.1 )

capsid scaffolding protein

NC_004431
(Escherichia coli CFT073)

6e-98

41) KPHS_17210
( YP_005226021.1 )

Presumed capsid scaffolding protein (GpO)

NC_016845
(Klebsiella pneumoniae HS11286)

4e-97

42) N559_3433
( YP_008426365.1 )

putative capsid scaffolding protein GpO

NC_022082
(Klebsiella pneumoniae JM45)

1e-95

43) N559_1288
( YP_008424331.1 )

phage capsid scaffolding protein

NC_022082
(Klebsiella pneumoniae JM45)

6e-92

44) ybl38
( YP_002998679.1 )

ybl38

NC_012892
(Escherichia coli BL21(DE3))

9e-92

45) ECD_00834
( YP_003053500.1 )

capsid scaffolding protein

NC_012971
(Escherichia coli BL21(DE3))

9e-92

46) ECBD_2763
( YP_003036969.1 )

capsid scaffolding

NC_012947
(Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG)

9e-92

47) ECB_00834
( YP_003044052.1 )

putative capsid scaffolding protein

NC_012967
(Escherichia coli REL606)

9e-92

48) KPN2242_07320
( YP_005953947.1 )

capsid scaffold-like protein

NC_017540
(Klebsiella pneumoniae KCTC 2242)

5e-88

49) PAGR_g0661
( YP_005991417.1 )

phage capsid scaffolding protein

NC_017554
(Pantoea ananatis PA13)

2e-84

50) ETA_05710
( YP_001906515.1 )

capsid scaffolding protein

NC_010694
(Erwinia tasmaniensis Et1/99)

2e-82

51) O
( YP_003521452.1 )

NC_013956
(Pantoea ananatis LMG 20103)

6e-82

52) CSSP291_01685
( YP_007439224.1 )

capsid scaffold-like protein

NC_020260
(Cronobacter sakazakii Sp291)

3e-76

53) ECENHK_17040
( YP_006579867.1 )

capsid scaffold-like protein

NC_018405
(Enterobacter cloacae ENHKU01)

4e-76

54) YPK_2328
( YP_001721058.1 )

capsid scaffolding

NC_010465
(Yersinia pseudotuberculosis YPIII)

2e-64

55) YPTB1858
( YP_070384.1 )

V protein phage 186

NC_006155
(Yersinia pseudotuberculosis IP 32953)

5e-63

56) YPTS_1895
( YP_001872319.1 )

capsid scaffolding

NC_010634
(Yersinia pseudotuberculosis PB1/+)

5e-63

57) Rahaq_1478
( YP_004212227.1 )

capsid scaffolding

NC_015061
(Rahnella sp. Y9602)

4e-59

58) PMI1991
( YP_002151714.1 )

phage capsid scaffolding protein

NC_010554
(Proteus mirabilis HI4320)

2e-58

59) Q7S_18555
( YP_005403489.1 )

capsid scaffolding protein

NC_017047
(Rahnella aquatilis HX2)

3e-58

60) Rahaq_0580
( YP_004211334.1 )

capsid scaffolding

NC_015061
(Rahnella sp. Y9602)

1e-57

61) Y11_13251
( YP_006004824.1 )

phage capsid scaffolding protein

NC_017564
(Yersinia enterocolitica Y11)

2e-56

62) Y11_25401
( YP_006006039.1 )

phage capsid scaffolding protein

NC_017564
(Yersinia enterocolitica Y11)

2e-56

63) XNC1_3081
( YP_003713253.1 )

capsid scaffolding protein (GpO)

NC_014228
(Xenorhabdus nematophila ATCC 19061)

3e-56

64) PAU_04294
( YP_003043122.1 )

putative capsid scaffolding protein

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

3e-56

65) PC1_3172
( YP_003018731.1 )

capsid scaffolding

NC_012917
(Pectobacterium carotovorum PC1)

5e-56

66) YPTB1761
( YP_070287.1 )

V protein bacteriophage 186

NC_006155
(Yersinia pseudotuberculosis IP 32953)

2e-55

67) LHK_00418
( YP_002794422.1 )

Phage capsid scaffolding

NC_012559
(Laribacter hongkongensis HLHK9)

9e-55

68) LHK_02581
( YP_002796571.1 )

Phage capsid scaffolding

NC_012559
(Laribacter hongkongensis HLHK9)

9e-55

69) LHK_02583
( YP_002796573.1 )

Phage capsid scaffolding

NC_012559
(Laribacter hongkongensis HLHK9)

9e-55

70) Q7S_07130
( YP_005401237.1 )

capsid scaffolding protein

NC_017047
(Rahnella aquatilis HX2)

2e-54

71) Rahaq2_1533
( YP_005199551.1 )

Phage capsid scaffolding protein (GPO) serine peptidase

NC_016818
(Rahnella aquatilis CIP 78.65)

3e-54

72) H650_11890
( YP_008108191.1 )

precorrin-8W decarboxylase

NC_021500
(Enterobacter sp. R4-368)

1e-53

73) ECENHK_12695
( YP_006579022.1 )

phage capsid scaffolding protein

NC_018405
(Enterobacter cloacae ENHKU01)

2e-52

74) HSM_1166
( YP_001784496.1 )

phage capsid scaffolding

NC_010519
(Haemophilus somnus 2336)

3e-52

75) gpO
( YP_003739496.1 )

phage capsid scaffolding protein

NC_014306
(Erwinia billingiae Eb661)

4e-52

76) Ent638_3500
( YP_001178209.1 )

phage capsid scaffolding

NC_009436
(Enterobacter sp. 638)

8e-52

77) NT01EI_3119
( YP_002934504.1 )

phage capsid scaffolding protein GpO

NC_012779
(Edwardsiella ictaluri 93-146)

2e-51

78) Rahaq2_3327
( YP_005201271.1 )

Phage capsid scaffolding protein (GPO) serine peptidase

NC_016818
(Rahnella aquatilis CIP 78.65)

3e-51

79) KPHS_40180
( YP_005228318.1 )

putative prophage capsid scaffolding protein

NC_016845
(Klebsiella pneumoniae HS11286)

3e-50

80) A225_3960
( YP_006499653.1 )

phage capsid scaffolding protein

NC_018106
(Klebsiella oxytoca E718)

4e-50

81) Sbal195_2915
( YP_001555341.1 )

capsid scaffolding

NC_009997
(Shewanella baltica OS195)

4e-50

82) Sbal678_2923
( YP_005274124.1 )

capsid scaffolding

NC_016901
(Shewanella baltica OS678)

4e-50

83) MU9_2821
( YP_007506239.1 )

hypothetical protein

NC_020418
(Morganella morganii KT)

1e-49

84) NTHI1887
( YP_249306.1 )

capsid scaffolding protein

NC_007146
(Haemophilus influenzae 86-028NP)

1e-49

85) AvCA_37600
( YP_007894686.1 )

Phage P2 capsid scaffolding gpO-like protein

NC_021149
(Azotobacter vinelandii CA)

1e-49

86) AvCA6_37600
( YP_007899735.1 )

Phage P2 capsid scaffolding gpO-like protein

NC_021150
(Azotobacter vinelandii CA6)

1e-49

87) O
( YP_002800879.1 )

phage P2 capsid scaffolding gpO-like protein

NC_012560
(Azotobacter vinelandii DJ)

1e-49

88) B565_2459
( YP_004393111.1 )

hypothetical protein

NC_015424
(Aeromonas veronii B565)

2e-49

89) KPN_04881
( YP_001337125.1 )

putative prophage capsid scaffolding protein

NC_009648
(Klebsiella pneumoniae subsp. pneumoniae MGH 78578)

2e-49

90) SE451236_19705
( YP_008266933.1 )

precorrin-8W decarboxylase

NC_021820
(Salmonella enterica 08-1736)

3e-49

91) CFSAN001992_20205
( YP_007473753.1 )

putative capsid scaffolding protein

NC_020307
(Salmonella enterica CFSAN001992)

4e-49

92) STMMW_31981
( YP_005234217.1 )

putative capsid scaffolding protein

NC_016854
(Salmonella enterica D23580)

4e-49

93) SBG_2829
( YP_004731642.1 )

phage protein V

NC_015761
(Salmonella bongori NCTC 12419)

6e-49

94) CFU_0995
( YP_004751650.1 )

putative bacteriophage protein

NC_015856
(Collimonas fungivorans Ter331)

9e-49

95) PARA_04010
( YP_004822102.1 )

phage capsid scaffolding protein

NC_015964
(Haemophilus parainfluenzae T3T1)

1e-48

96) Csal_1398
( YP_573452.1 )

phage capsid scaffolding

NC_007963
(Chromohalobacter salexigens DSM 3043)

3e-48

97) A464_2755
( YP_008323350.1 )

Phage capsid scaffolding protein

NC_021870
(Salmonella bongori N268-08)

4e-48

98) gpO
( YP_001005964.1 )

putative phage capsid scaffolding protein

NC_008800
(Yersinia enterocolitica 8081)

6e-48

99) ST548_p3239
( YP_007391359.1 )

Phage capsid scaffolding protein

NC_020181
(Enterobacter aerogenes EA1509E)

1e-47

100) gpO
( YP_005828351.1 )

Probable bacteriophage capsid scaffolding protein

NC_017451
(Haemophilus influenzae R2866)

8e-48

101) RSc1938
( NP_520059.1 )

bacteriophage protein

NC_003295
(Ralstonia solanacearum GMI1000)

9e-48

102) SNSL254_A4365
( YP_002043301.1 )

phage capsid scaffolding protein GpO

NC_011080
(Salmonella enterica SL254)

9e-47

103) SN31241_46510
( YP_008362563.1 )

Presumed capsid-scaffolding protein

NC_021902
(Salmonella enterica USMARC-S3124.1)

9e-47

104) ETAC_16510
( YP_007630783.1 )

Presumed capsid-scaffolding protein GpO

NC_020796
(Edwardsiella tarda C07-087)

1e-46

105) HifGL_001376
( YP_008544476.1 )

putative capsid scaffolding protein

NC_022356
(Haemophilus influenzae KR494)

2e-46

106) O
( NP_638319.1 )

phage-related capsid scaffold protein

NC_003902
(Xanthomonas campestris ATCC 33913)

6e-46

107) D648_14580
( YP_007668970.1 )

Phage capsid scaffolding

NC_020834
(Mannheimia haemolytica USDA-ARS-USMARC-185)

8e-46

108) XCAW_04502
( YP_007652464.1 )

phage-related capsid scaffold protein

NC_020815
(Xanthomonas citri Aw12879)

1e-45

109) F382_02230
( YP_008233329.1 )

capsule biosynthesis protein CapA

NC_021743
(Mannheimia haemolytica D153)

2e-45

110) J451_01155
( YP_008221635.1 )

capsule biosynthesis protein CapA

NC_021739
(Mannheimia haemolytica D174)

2e-45

111) MHH_c18540
( YP_007883658.1 )

putative capsid-scaffolding protein O

NC_021082
(Mannheimia haemolytica M42548)

2e-45

112) D650_13100
( YP_007666087.1 )

Phage capsid scaffolding

NC_020833
(Mannheimia haemolytica USDA-ARS-USMARC-183)

2e-45

113) N220_05875
( YP_008338629.1 )

capsule biosynthesis protein CapA

NC_021883
(Mannheimia haemolytica USMARC_2286)

2e-45

114) XCAW_01161
( YP_007649168.1 )

phage capsid scaffolding family protein

NC_020815
(Xanthomonas citri Aw12879)

2e-45

115) HICON_07000
( YP_004137848.1 )

capsid scaffolding protein

NC_014922
(Haemophilus influenzae F3047)

3e-45

116) gpO
( YP_001914549.1 )

phage capsid scaffolding protein (GPO)

NC_010717
(Xanthomonas oryzae PXO99A)

5e-45

117) F504_3099
( YP_007634110.1 )

Phage capsid scaffolding protein

NC_020799
(Ralstonia solanacearum FQY_4)

6e-45

118) XOO1713
( YP_200352.1 )

phage-related capsid scaffold protein

NC_006834
(Xanthomonas oryzae KACC10331)

6e-45

119) APECO1_4468
( YP_852007.1 )

phage capsid scaffolding protein

NC_008563
(Escherichia coli APEC O1)

1e-44

120) ECH74115_3051
( YP_002271351.1 )

phage capsid scaffolding protein GpO

NC_011353
(Escherichia coli EC4115)

1e-44

121) ECOK1_0944
( YP_006100163.1 )

phage capsid scaffolding protein

NC_017628
(Escherichia coli IHE3034)

1e-44

122) EKO11_1682
( YP_005277368.1 )

capsid scaffolding

NC_016902
(Escherichia coli KO11FL)

1e-44

123) EKO11_4426
( YP_005280045.1 )

capsid scaffolding

NC_016902
(Escherichia coli KO11FL)

1e-44

124) KO11_02920
( YP_006162922.1 )

putative capsid scaffolding protein (GpO) from prophage P2

NC_017660
(Escherichia coli KO11FL)

1e-44

125) gpO
( YP_006164775.1 )

putative capsid scaffolding protein (GpO) from prophage P2

NC_017660
(Escherichia coli KO11FL)

1e-44

126) LY180_10855
( YP_008565265.1 )

precorrin-8W decarboxylase

NC_022364
(Escherichia coli LY180)

1e-44

127) LY180_20400
( YP_008567105.1 )

precorrin-8W decarboxylase

NC_022364
(Escherichia coli LY180)

1e-44

128) ECOPMV1_04287
( YP_008574005.1 )

Phage capsid scaffolding protein (GPO) serine peptidase

NC_022370
(Escherichia coli PMV-1)

1e-44

129) ECS88_2216
( YP_002391908.1 )

capsid scaffolding protein (GpO) from prophage P2

NC_011742
(Escherichia coli S88)

1e-44

130) EcSMS35_4324
( YP_001746269.1 )

phage capsid scaffolding protein GpO

NC_010498
(Escherichia coli SMS-3-5)

1e-44

131) ECSP_2866
( YP_003078731.1 )

phage capsid scaffolding protein GpO

NC_013008
(Escherichia coli TW14359)

1e-44

132) gpO2
( YP_006124954.1 )

phage capsid scaffolding protein

NC_017635
(Escherichia coli W)

1e-44

133) gpO
( YP_006173670.1 )

putative capsid scaffolding protein (GpO) from prophage P2

NC_017664
(Escherichia coli W)

1e-44

134) WFL_20670
( YP_006175562.1 )

putative capsid scaffolding protein (GpO) from prophage P2

NC_017664
(Escherichia coli W)

1e-44

135) SSON53_23535
( YP_005459195.1 )

capsid scaffolding protein (GpO) from prophage P2

NC_016822
(Shigella sonnei 53G)

1e-44

136) O
( NP_642954.1 )

phage-related capsid scaffold protein

NC_003919
(Xanthomonas axonopodis 306)

9e-45

137) XAC29_13475
( YP_007637090.1 )

phage-related capsid scaffold protein

NC_020800
(Xanthomonas axonopodis Xac29-1)

9e-45

138) APECO78_08370
( YP_007380849.1 )

Phage capsid scaffolding protein

NC_020163
(Escherichia coli APEC O78)

1e-44

139) ECNA114_4028
( YP_006141146.1 )

Phage capsid scaffolding protein

NC_017644
(Escherichia coli NA114)

2e-44

140) SEEH1578_06415
( YP_008245356.1 )

Phage capsid scaffolding protein

NC_021810
(Salmonella enterica 41578)

2e-44

141) SMWW4_v1c42470
( YP_007408053.1 )

phage capsid scaffolding protein GpO

NC_020211
(Serratia marcescens WW4)

3e-44

142) H045_14160
( YP_007398393.1 )

putative capsid scafolding protein

NC_020209
(Pseudomonas poae RE*1-1-14)

3e-43

143) L483_01355
( YP_008092126.1 )

capsid scaffolding protein

NC_021491
(Pseudomonas putida H8234)

5e-43

144) PFLCHA0_c20670
( YP_007999352.1 )

presumed capsid-scaffolding protein

NC_021237
(Pseudomonas fluorescens CHA0)

5e-42

145) PC1_2642
( YP_003018208.1 )

capsid scaffolding

NC_012917
(Pectobacterium carotovorum PC1)

1e-41

146) B479_16730
( YP_007230181.1 )

putative capsid scafolding protein

NC_019905
(Pseudomonas putida PC9)

7e-42

147) O
( YP_006185957.1 )

phage capsid scaffolding protein

NC_017671
(Stenotrophomonas maltophilia D457)

2e-41

148) Hsero_0908
( YP_003774333.1 )

phage-related capsid scaffold bacteriophage protein

NC_014323
(Herbaspirillum seropedicae SmR1)

8e-41

149) UMNK88_1025
( YP_006132813.1 )

phage capsid scaffolding protein

NC_017641
(Escherichia coli UMNK88)

6e-39

150) PFLU1589
( YP_002871230.1 )

putative capsid scafolding protein

NC_012660
(Pseudomonas fluorescens SBW25)

2e-38

151) O
( YP_002403160.1 )

Capsid scaffolding protein O

NC_011748
(Escherichia coli 55989)

1e-34

152) SSON53_08280
( YP_005456206.1 )

scaffolding protein

NC_016822
(Shigella sonnei 53G)

1e-34

153) ECO111_2195
( YP_003234615.1 )

putative capsid scaffolding protein

NC_013364
(Escherichia coli 11128)

2e-34

154) ECO103_1876
( YP_003221815.1 )

scaffolding protein

NC_013353
(Escherichia coli 12009)

2e-34

155) G2583_2129
( YP_003499680.1 )

capsid scaffolding protein

NC_013941
(Escherichia coli CB9615)

2e-34

156) ECSE_1853
( YP_002293128.1 )

phage capsid scaffolding protein

NC_011415
(Escherichia coli SE11)

2e-34

157) ETEC_1991
( YP_006115559.1 )

putative phage capsid scaffolding

NC_017633
(Escherichia coli ETEC H10407)

3e-34

158) ECNA114_0860
( YP_006137957.1 )

Putative capsid scaffolding protein

NC_017644
(Escherichia coli NA114)

3e-34

159) ECO26_2777
( YP_003229756.1 )

scaffolding protein

NC_013361
(Escherichia coli 11368)

5e-34

160) K756_05615
( YP_008123865.1 )

phage capsid scaffolding protein

NC_021521
(Haemophilus parasuis ZJ0906)

1e-33

• Sequence Alignments

1) SSPA2404 in NC_011147


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  441 bits (1662),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 277/277 (100%), Positives = 277/277 (100%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120
            GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180
            VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240
            ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277
            QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

2) SPA2581 in NC_006511


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  441 bits (1662),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 277/277 (100%), Positives = 277/277 (100%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120
            GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180
            VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240
            ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277
            QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

3) STY4626 in NC_003198


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  441 bits (1662),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 277/277 (100%), Positives = 277/277 (100%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120
            GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180
            VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240
            ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277
            QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

4) STBHUCCB_45750 in NC_016832


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  441 bits (1662),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 277/277 (100%), Positives = 277/277 (100%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120
            GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180
            VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240
            ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277
            QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

5) TY21A_22005 in NC_021176


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  441 bits (1662),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 277/277 (100%), Positives = 277/277 (100%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120
            GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180
            VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240
            ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277
            QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

6) t4320 in NC_004631


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  441 bits (1662),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 277/277 (100%), Positives = 277/277 (100%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120
            GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180
            VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240
            ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277
            QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

7) UMN798_2941 in NC_017046


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  438 bits (1650),  Expect = 2e-124, Method: Compositional matrix adjust.
 Identities = 274/277 (99%), Positives = 274/277 (99%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120
            GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEVQDEKPSLF  180
            VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEE QDEKPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQTDDARFSDVHKAVELVATEQQILSERTDKSLAENGERLSALESSLQEQ  240
            A VTALFTKKEQTDDARFSDVHKAVELVATEQQ LSERTDKSLAENGERLSALESSLQEQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277
            QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

8) SL1344_2692 in NC_016810


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  438 bits (1650),  Expect = 2e-124, Method: Compositional matrix adjust.
 Identities = 274/277 (99%), Positives = 274/277 (99%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120
            GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEVQDEKPSLF  180
            VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEE QDEKPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQTDDARFSDVHKAVELVATEQQILSERTDKSLAENGERLSALESSLQEQ  240
            A VTALFTKKEQTDDARFSDVHKAVELVATEQQ LSERTDKSLAENGERLSALESSLQEQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277
            QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

9) STM474_2844 in NC_016857


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  438 bits (1650),  Expect = 2e-124, Method: Compositional matrix adjust.
 Identities = 274/277 (99%), Positives = 274/277 (99%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120
            GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEVQDEKPSLF  180
            VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEE QDEKPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQTDDARFSDVHKAVELVATEQQILSERTDKSLAENGERLSALESSLQEQ  240
            A VTALFTKKEQTDDARFSDVHKAVELVATEQQ LSERTDKSLAENGERLSALESSLQEQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277
            QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

10) STM2721 in NC_003197


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  408 bits (1537),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 263/277 (95%), Positives = 271/277 (98%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120
            GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEVQDEKPSLF  180
            VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEE QDEKPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQTDEARFSDVHKAVELVASEQQNLSERTDKSLSEQDKRlselesslqeq  240
            A VTALFTKKEQTD+ARFSDVHKAVELVA+EQQNLSERTDKSL+E++ RLS LESSLQEQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  lAAFAELEQKLSSEDSRKDYRQRAPGGDAPAGTLTNC  277
             +AFAEL+Q+LS EDSRKDYRQRAPGGDAPAGTLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

11) STMDT12_C27730 in NC_016860


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  408 bits (1537),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 263/277 (95%), Positives = 271/277 (98%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120
            GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEVQDEKPSLF  180
            VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEE QDEKPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQTDEARFSDVHKAVELVASEQQNLSERTDKSLSEQDKRlselesslqeq  240
            A VTALFTKKEQTD+ARFSDVHKAVELVA+EQQNLSERTDKSL+E++ RLS LESSLQEQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  lAAFAELEQKLSSEDSRKDYRQRAPGGDAPAGTLTNC  277
             +AFAEL+Q+LS EDSRKDYRQRAPGGDAPAGTLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

12) STU288_13770 in NC_021151


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  408 bits (1537),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 263/277 (95%), Positives = 271/277 (98%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120
            GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEVQDEKPSLF  180
            VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEE QDEKPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQTDEARFSDVHKAVELVASEQQNLSERTDKSLSEQDKRlselesslqeq  240
            A VTALFTKKEQTD+ARFSDVHKAVELVA+EQQNLSERTDKSL+E++ RLS LESSLQEQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  lAAFAELEQKLSSEDSRKDYRQRAPGGDAPAGTLTNC  277
             +AFAEL+Q+LS EDSRKDYRQRAPGGDAPAGTLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

13) ECL_04425 in NC_014121


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  400 bits (1505),  Expect = 5e-113, Method: Compositional matrix adjust.
 Identities = 260/277 (94%), Positives = 271/277 (98%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNQTVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYN TVYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GRVTGLVAEEIKDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120
            GRVTGLVAEEI+DGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSIF  180
            VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPS+F
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQTDEACFSDVHKAVELVATEQQNLSERTDKSLSEQDKRlselesslqeq  240
            A VTALFTKKEQTD+A FSDVHKAVELVATEQQNLSERTDKSL+E++ RLS LESSLQEQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  qAAFAELEKKLSSEDSRKDYRQRAPGGDAPAGTLTNC  277
            Q+AFAEL+++LS EDSRKDYRQRAPGGDAPAGTLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

14) SeD_A3049 in NC_011205


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  397 bits (1494),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 235/277 (85%), Positives = 263/277 (95%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFTAAEETVIELEEAQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEEAQD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDMHKAVELVATEQQNLSARTEKSLSEQDERLSELETALQAQ  240
            A VTALFTKKEQ+DDARFSD+HKAVELVATEQQNLS RT+KSL+E++ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVNKLSHEDSRQDYRQRATGGNASADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+A+A+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

15) SeAg_B2867 in NC_011149


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  395 bits (1485),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 234/277 (85%), Positives = 260/277 (94%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTASLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT +LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFTAAEETVIELEETQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE+QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTEKSLSEQEERLSEMEIALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS +E +LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELLDKLSHEDSRQDYRQRATGGNASADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+A+A+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

16) O in NC_011745


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  377 bits (1418),  Expect = 4e-106, Method: Compositional matrix adjust.
 Identities = 233/277 (85%), Positives = 260/277 (94%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFtaaeetvieleeiqeDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE Q++KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTEKSLSEQEERLSKLETALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QAAFNELVDKLSHEDCRQDYRQRATGGNAPADTLTNC  277
            Q+AF EL ++LS+ED R+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

17) O in NC_011750


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  376 bits (1415),  Expect = 6e-106, Method: Compositional matrix adjust.
 Identities = 236/277 (86%), Positives = 262/277 (95%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEIKEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI++GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFTAAEETVIELEEIQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

18) CE10_1743 in NC_017646


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  376 bits (1415),  Expect = 6e-106, Method: Compositional matrix adjust.
 Identities = 236/277 (86%), Positives = 262/277 (95%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEIKEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI++GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFTAAEETVIELEEIQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

19) EcHS_A0925 in NC_009800


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  376 bits (1413),  Expect = 8e-106, Method: Compositional matrix adjust.
 Identities = 236/277 (86%), Positives = 261/277 (95%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFTAAEETVIELEEIQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

20) KO11_19440 in NC_017660


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  376 bits (1413),  Expect = 8e-106, Method: Compositional matrix adjust.
 Identities = 236/277 (86%), Positives = 261/277 (95%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFTAAEETVIELEEIQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

21) EKO11_3020 in NC_016902


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  376 bits (1413),  Expect = 8e-106, Method: Compositional matrix adjust.
 Identities = 236/277 (86%), Positives = 261/277 (95%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFTAAEETVIELEEIQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

22) P12B_c2740 in NC_017663


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  376 bits (1413),  Expect = 8e-106, Method: Compositional matrix adjust.
 Identities = 236/277 (86%), Positives = 261/277 (95%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFTAAEETVIELEEIQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

23) UMNK88_909 in NC_017641


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  376 bits (1413),  Expect = 8e-106, Method: Compositional matrix adjust.
 Identities = 236/277 (86%), Positives = 261/277 (95%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFTAAEETVIELEEIQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

24) ECW_m0923 in NC_017635


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  376 bits (1413),  Expect = 8e-106, Method: Compositional matrix adjust.
 Identities = 236/277 (86%), Positives = 261/277 (95%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFTAAEETVIELEEIQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

25) WFL_04495 in NC_017664


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  376 bits (1413),  Expect = 8e-106, Method: Compositional matrix adjust.
 Identities = 236/277 (86%), Positives = 261/277 (95%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFTAAEETVIELEEIQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

26) CFSAN001992_19840 in NC_020307


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  376 bits (1413),  Expect = 9e-106, Method: Compositional matrix adjust.
 Identities = 236/277 (86%), Positives = 261/277 (95%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTEPLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFTAAEETVIELEEVQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

27) SBO_0759 in NC_007613


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  374 bits (1404),  Expect = 4e-105, Method: Compositional matrix adjust.
 Identities = 235/277 (85%), Positives = 260/277 (94%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTFMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFT MEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFTAAEETVIELEEVQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

28) O in NC_011742


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  372 bits (1398),  Expect = 1e-104, Method: Compositional matrix adjust.
 Identities = 235/277 (85%), Positives = 260/277 (94%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNLLANRKQNPANLFTAAEETVIELEEIQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHN LANRKQNP NLF+ A ET+IELEE QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

29) EbC_10910 in NC_014306


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  372 bits (1400),  Expect = 9e-105, Method: Compositional matrix adjust.
 Identities = 222/284 (79%), Positives = 253/284 (90%), Gaps = 7/284 (2%)

Query  1    MTVKAKRFRIGVEGATTDGREITREWLVQMAAAYNPELYTATINLEHIKSYSPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREI REWLVQMAA+YNP +YTA INLEHIKSY P+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALAAEEIKDGPLVGKMALYADIEPTDGLVALVKLGQKLFTSMEISPKFADTGKAYL  120
            G+VT+L AEEI+DGPL GKMALYADIEPTD+LV LVK GQKLFTSME+S KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  IGLAATDDPASLGTEILTFSATATRNPLANRKQSPENLFSAAEETVIELTEAQDDKLSLF  180
            +GL+ATDDPASLGTE+L+FSA+A++NPLANRKQ+PENLFS A ET+IEL EAQD+K SLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  TRVTALFSKKEQSDDARFSDVHKAVELVATEQQSLSTRTDSALSGQAERLSQMETELKTQ  240
            + VTALF+KKEQ+DDARFSDVHKAVELVATEQQ+LS RTD +L+ ++ERLS +E+ L+ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFSEQVAAFNELQAQLSRQDSRTDYRQRAPGGDVPAGGLTNC  284
            QTAF+       ELQ QLSR+DSR DYRQRAPGGD PAG LTNC
Sbjct  241  QTAFA-------ELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

30) KPR_4553 in NC_021232


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  360 bits (1351),  Expect = 6e-101, Method: Compositional matrix adjust.
 Identities = 212/277 (77%), Positives = 243/277 (88%), Gaps = 0/277 (0%)

Query  1    MAVKAKRFRIGVEGATTDGRNIERAWLEQMAASYDPQVYTALINLEHIKGYTPDSPFRRF  60
            M+VKAKRFRIGVEGATTDGR+I+R WL QMAASY+P VYTALINLEHIK+Y P+S F R+
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GTVDKLEAEEIADGPLKGKLALYAWITPSEDLVAYTRNLQKLFTSMEVNTSFADTGKAYL  120
            G V  L AEEI DGPL GK+ALYA I P++ LV   ++ QKLFTSMEV+T FADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLQFSASARSNPLAGRKQNPENLFTAAEETLIEWEEVQDDKPSLF  180
            VGL+ATDDPASLGTEML FSASA  NPLA RKQNPENLF+ A ETLIE EE QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  SRVAAMFTKKEQNDDARFSDVHRAVELIATEQQNLSERTDHSLSAQDARIAELEASLQEQ  240
            + V+A+FTKKEQ DDARFSDVH+AVEL+ATEQQNLSERTD SL+ ++ R++ LE+SLQEQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFAELEQRLSQEDSRKDYRQRAPGGDAPSGTLTNC  277
            QTAFAEL+Q+LS+EDSRKDYRQRAPGGDAP+GTLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

31) EcolC_2776 in NC_010468


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  358 bits (1344),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 236/277 (86%), Positives = 262/277 (95%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSTKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVSTKFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFtaaeetvieleeiqeDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE Q++KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVNKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

32) I137_13055 in NC_021984


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  356 bits (1339),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 235/277 (85%), Positives = 261/277 (95%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEIAEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFtaaeetvieleeiqeDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE Q++KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDVRFSDVHKAVELVATEQQNLSTRTekslseqeerlseleTALQEQ  240
            A VTALFTKKEQ+DD RFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQEQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

33) Pat9b_3433 in NC_014837


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  355 bits (1332),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 208/277 (76%), Positives = 249/277 (90%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREISREWLVQMSAAYNPQVYTATINLEHLKSYAPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREI REWLVQM+A+YNP VYTA INLEH+KSY P+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GTVSALVAEEITDGPLAGKMALYADILPTDSLVELVKKGQKLFTSMEVSTKFADTGKAYL  120
            G V++LVAEEI DGPLAGKMALYADI PTD+LVELVKKGQKLFTSMEVSTKFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLAFSAKAEQNPLAKRKQHPENLFTAATETLIELEDVQDEKPALF  180
            VGL+ATDDPASLGTEMLAFSA A +NPLA+RKQ+PENLF+ A ETLIELE+ QDEKP+LF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  TRIKAMFSKQQQSEDARFNDVHQAVELIASEQQEYSTRTEKALVGQeerlsklereleTQ  240
            + + A+F+K++Q++DARF+DVH+AVEL+A+EQQ+ S RT+K+L  + ERLS LE  L+ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  LVEFTELKEQLSQEDSRKDYRQRSPGGTGASESLTDC  277
               F+EL++QLS+EDSRKDYRQR+PGG +++ +LT+C
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

34) E2348C_0818 in NC_011601


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  354 bits (1329),  Expect = 4e-99, Method: Compositional matrix adjust.
 Identities = 234/277 (85%), Positives = 260/277 (94%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFtaaeetvieleeiqeDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE Q++KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  LTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTNC  277
             TAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

35) STY3676 in NC_003198


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  353 bits (1325),  Expect = 8e-99, Method: Compositional matrix adjust.
 Identities = 234/277 (85%), Positives = 260/277 (94%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFtaaeetvieleeiqeDKLSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE Q++K SLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVNKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

36) STBHUCCB_36000 in NC_016832


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  353 bits (1325),  Expect = 8e-99, Method: Compositional matrix adjust.
 Identities = 234/277 (85%), Positives = 260/277 (94%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFtaaeetvieleeiqeDKLSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE Q++K SLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVNKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

37) TY21A_17295 in NC_021176


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  353 bits (1325),  Expect = 8e-99, Method: Compositional matrix adjust.
 Identities = 234/277 (85%), Positives = 260/277 (94%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFtaaeetvieleeiqeDKLSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE Q++K SLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVNKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

38) t3418 in NC_004631


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  353 bits (1325),  Expect = 8e-99, Method: Compositional matrix adjust.
 Identities = 234/277 (85%), Positives = 260/277 (94%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFtaaeetvieleeiqeDKLSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE Q++K SLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALQAQ  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  QTAFNELVNKLSHEDSRQDYRQRATGGNAPADTLTNC  277
            QTAF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

39) LF82_403 in NC_011993


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  352 bits (1321),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 232/275 (85%), Positives = 259/275 (95%), Gaps = 0/275 (0%)

Query  1    MKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRYGK  60
            +KAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRYG+
Sbjct  3    VKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGR  62

Query  61   VTALFAEEIAEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYLVG  120
            VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYLVG
Sbjct  63   VTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  121  LAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFtaaeetvieleeiqeDKPSLFAR  180
            L+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE Q++KPSLFA 
Sbjct  123  LGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLFAS  182

Query  181  VTALFTKKEQSDDVRFSDVHKAVELVATEQQNLSTRTekslseqeerlseleTALQEQQT  240
            VTALFTKKEQ+DD RFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQEQQT
Sbjct  183  VTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQQT  242

Query  241  AFNELVDKLSHEDSRQDYRQRATGGNAPADTLTNC  275
            AF EL ++LS+EDSR+DYRQRA GG+APA+TLTNC
Sbjct  243  AFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

40) c0950 in NC_004431


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  350 bits (1313),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 230/275 (84%), Positives = 258/275 (94%), Gaps = 0/275 (0%)

Query  1    MKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRYGK  60
            +KAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRYG+
Sbjct  3    VKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGR  62

Query  61   VTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYLVG  120
            VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYLVG
Sbjct  63   VTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  121  LAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFtaaeetvieleeiqeDKPSLFAR  180
            L+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE Q++KPSLFA 
Sbjct  123  LGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLFAS  182

Query  181  VTALFTKKEQSDDARFSDVHNAVELVATEQQNLSARTekslseqeerlseleTALQAQQT  240
            VTALFTKKEQ+DDARFSDVH+AVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ QQT
Sbjct  183  VTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQQT  242

Query  241  AFNELVDKLSHEDSRQDYRQRATGGNAPVDTLTNC  275
            AF EL ++LS+EDSR+DYRQRA GG+AP +TLTNC
Sbjct  243  AFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

41) KPHS_17210 in NC_016845


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  347 bits (1303),  Expect = 4e-97, Method: Compositional matrix adjust.
 Identities = 233/277 (85%), Positives = 260/277 (94%), Gaps = 0/277 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFtaaeetvieleeiqeDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE Q++KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALqaq  240
            A VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ Q
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  qaaFNELVDKLSHEDCRQDYRQRATGGNAPADTLTNC  277
            Q+AF EL ++LS+ED R+DYRQRA GG+APA+TLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

42) N559_3433 in NC_022082


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  342 bits (1285),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 230/275 (84%), Positives = 258/275 (94%), Gaps = 0/275 (0%)

Query  1    MKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRYGK  60
            +KAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRYG+
Sbjct  3    VKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGR  62

Query  61   VTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYLVG  120
            VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYLVG
Sbjct  63   VTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  121  LAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFtaaeetvieleeiqeDKPSLFAR  180
            L+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE Q++KPSLFA 
Sbjct  123  LGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLFAS  182

Query  181  VTALFTKKEQSDDARFSDVHKAVELVATEQQNLSARTekslseqeerlseleTALqaqqa  240
            VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT+KSL+E+ ERLS LE++LQ QQ+
Sbjct  183  VTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQQT  242

Query  241  aFNELVDKLSHEDCRQDYRQRATGGNAPADTLTNC  275
            AF EL ++LS+ED R+DYRQRA GG+APA+TLTNC
Sbjct  243  AFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

43) N559_1288 in NC_022082


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  330 bits (1238),  Expect = 6e-92, Method: Compositional matrix adjust.
 Identities = 218/277 (79%), Positives = 242/277 (88%), Gaps = 0/277 (0%)

Query  1    MAVKAKRFRIGVEGATTDGRTIERAWLEQMAASYNPQVYTALINLEHIKGYTPDSPFRRF  60
            M+VKAKRFRIGVEGATTDGR I+R WL QMAASYNP VYTALINLEHIK+Y P+S F R+
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GTVDKLEAEEIADGPLKGKMALYAWITPSADLVAYTRKLQKLFTSMEVNTSFADTGKAYL  120
            G V  L AEEI DGPL GKMALYA I P+  LV   +K QKLFTSMEV+T FADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLQFSASAKSNPLAGRKQSPENLFTAAEETLIEWEEVQGEKTSLF  180
            VGL+ATDDPASLGTEML FSASA  NPLA RKQ+PENLF+ A ETLIE EE Q+EK SLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ARVTAMFTKKEQTDDARFSDVHRAVELVATEQQNLSERTEQSLSAQDKRLAALETSlqeq  240
            A VTA+FTKKEQTDDARFSDVH+AVELVATEQQNLSERT++SL+ ++ RL+ALE+SLQEQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  qtafaeleqqlqqeDSRKDYRQRAPGGNAPAGTLTNC  277
            QTAFAEL+QQL +EDSRKDYRQRAPGG+APAGTLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

44) ECD_00834 in NC_012971


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  329 bits (1234),  Expect = 9e-92, Method: Compositional matrix adjust.
 Identities = 194/219 (89%), Positives = 209/219 (96%), Gaps = 0/219 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFTAAEETVIELEEVQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  SRVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSART  219
            + VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERT  219

45) ybl38 in NC_012892


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  329 bits (1234),  Expect = 9e-92, Method: Compositional matrix adjust.
 Identities = 194/219 (89%), Positives = 209/219 (96%), Gaps = 0/219 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFTAAEETVIELEEVQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  SRVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSART  219
            + VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERT  219

46) ECBD_2763 in NC_012947


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  329 bits (1234),  Expect = 9e-92, Method: Compositional matrix adjust.
 Identities = 194/219 (89%), Positives = 209/219 (96%), Gaps = 0/219 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFTAAEETVIELEEVQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  SRVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSART  219
            + VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERT  219

47) ECB_00834 in NC_012967


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  329 bits (1234),  Expect = 9e-92, Method: Compositional matrix adjust.
 Identities = 194/219 (89%), Positives = 209/219 (96%), Gaps = 0/219 (0%)

Query  1    MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALINLEHIKSYLPDSTFNRY  60
            MTVKAKRFRIGVEGATTDGREIQREWL QMAASYNP+VYTALINLEHIKSYLP+STFNRY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKLFTSMEVSPKFADTGKAYL  120
            G+VT+L AEEI +GPLAGKMALYAD+EPT++LVELVKKGQKLFTSMEVS KFADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFTAAEETVIELEEVQDDKPSLF  180
            VGL+ATDDPASLGTEML+FSASAAHNPLANRKQNP NLF+ A ET+IELEE QD+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  SRVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSART  219
            + VTALFTKKEQ+DDARFSDVHKAVELVATEQQNLS RT
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERT  219

48) KPN2242_07320 in NC_017540


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  317 bits (1188),  Expect = 5e-88, Method: Compositional matrix adjust.
 Identities = 208/277 (76%), Positives = 241/277 (88%), Gaps = 0/277 (0%)

Query  1    MAVKAKRFRIGVEGATTDGRNIERAWLEQMAASYDPQVYTALINLEHIKGYTPDSPFRRF  60
            M+VKAKRFRIGVEGATTDGR+I+R WL QMAASY+P VYTALINLEHIK+Y P+S F R+
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GTVDKLEAEEITDDPLKGKLALYAWITPSEDLVAYTRNLQKLFTSMEVNTSFADTGKAYL  120
            G V  L AEEI D+PL GK+ALYA I P++ LV   ++ QKLFTSMEV+T FADTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAATDDPASLGTEMLQFSASARSNPLAGRKQNPENLFTAAEETLIEWEEVQYEKPSLF  180
            VGL+ATDDPASLGTEML FSASA  NPLA RKQNPENLF+ A ETLIE EE Q EKPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  SRVAAMFTKKEQNDEARFSDVHRAVELIATEQQNLSERTDHSQSAQDARIaeleaslqeq  240
            + V+A+FTKKEQ D+ARFSDVH+AVEL+ATEQQNLSERTD S + ++ R++ LE+SLQEQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  qaafaeleqrlSQEDSRKDYRQRAPGGNAPAGTLTNC  277
            Q+AFAEL+Q+LS+EDSRKDYRQRAPGG+APAGTLTNC
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

49) PAGR_g0661 in NC_017554


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  305 bits (1142),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 174/287 (61%), Positives = 229/287 (80%), Gaps = 10/287 (3%)

Query  1    MAKKAKRFRIGVEGATTDGRTIERSWLEQMAANYDPAVYTAVINMEHIKGYTPDSAFRRF  60
            M+ KAKRFRIGVEGATTDGR I+R WL QMAA+Y+P+VYTA+IN+EHIK+Y P+S+F R+
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GVVDALDTEEISDGLLKGKLGLYAVINPTDELVTMTGNMQKLFTSMEIRPEFADTGEAYL  120
            G V +L +EEI DG L GK++LYA I+PTD LV +  + QKLFTSME+   FADTG AYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  IGLAVTDDPASLGTEMLQFSASAGANPLANRKQHPDNLFTAATETVIEFEDVADEKPSLF  180
            +GL+ TDDPASLGTEML FSASA+ NPLANRKQ+P+NLF+ A ET+IE+E+  DEKPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  SRVSALFSNKQKSDDARFSDVHRAVELVATEQQEFSQRIETALSEQASSLQAHLTEALSA  240
            + V+ALF++K+++DDARFSDVH+AVELVATEQQ++S+R + +L+E++  L A L  +L  
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSA-LESSLQE  239

Query  241  ETAAREQLQTDFSQLQAQLSREDGRQDFRPRTPGNGSGNNQDVRTDC  287
            +       QT F++LQ QLSRED+R+D+R R+PG ++       T+C
Sbjct  240  Q-------QTAFAELQQQLSREDSRKDYRQRAPGGDAPAG--TLTNC  277

50) ETA_05710 in NC_010694


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  299 bits (1119),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 169/287 (59%), Positives = 231/287 (81%), Gaps = 10/287 (3%)

Query  1    MAKKAKRFRIGVEGATTDGRTIVRSWLEQMAANYDPAVYTAVINMEHIKGYTPDSAFRRF  60
            M+ KAKRFRIGVEGATTDGR I R WL QMAA+Y+P+VYTA+IN+EHIK+Y P+S+F R+
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GVVDALDTEEISDGLLKGKLGLYAVINPTDELVTMTGNMQKLFTSMEIRPEFADTGEAYL  120
            G V +L +EEI DG L GK++LYA I+PTD LV +  + QKLFTSME+   FADTG AYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  IGLAVTDDPASLGTEILQFSASAGANPLANRKQHPNNLFTAATETVIEFEDVADDKPSLF  180
            +GL+ TDDPASLGTE+L FSASA+ NPLANRKQ+P+NLF+ A ET+IE+E+  D+KPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  SRVSALFSNKQKSDDARFGDVHKAVELVATEQQEFSQRIETALSEQASSLQAQFTEGLSA  240
            + V+ALF++K+++DDARF+DVHKAVELVATEQQ++S+R + +L+E++  L A     L +
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSA-----LES  235

Query  241  EVAAREQLQADFSQLQERLSREDGRQDFRPRTPGNGSGNSQDVRTDC  287
             +   ++ Q+ F++LQ++LSRED+R+D+R R+PG ++  +    T+C
Sbjct  236  SL---QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAG--TLTNC  277

51) O in NC_013956


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  297 bits (1113),  Expect = 6e-82, Method: Compositional matrix adjust.
 Identities = 174/287 (61%), Positives = 233/287 (82%), Gaps = 10/287 (3%)

Query  34   MAKKAKRFRIGVEGATTDGRTIERSWLEQMAANYDPAVYTAVINMEHIKGYTPDSAFRRF  93
            M+ KAKRFRIGVEGATTDGR I+R WL QMAA+Y+P+VYTA+IN+EHIK+Y P+S+F R+
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  94   GVVDALDTEEISDGLLKGKLGLYAVINPTDELVTMTGNMQKLFTSMEIRPEFADTGEAYL  153
            G V +L +EEI DG L GK++LYA I+PTD LV +  + QKLFTSME+   FADTG AYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  154  IGLAVTDDPASLGTEMLQFSASAGANPLANRKQHPDNLFTAAAETVIEFEDEADEKPSLF  213
            +GL+ TDDPASLGTEML FSASA+ NPLANRKQ+P+NLF+ A ET+IE+E+  DEKPSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  214  SRVSALFSNKQKSDDARFSDVHRAVELVATEQQAFSQRIETALSEQASSLQAHFTEALSA  273
            + V+ALF++K+++DDARFSDVH+AVELVATEQQ +S+R + +L+E++        E LSA
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENG--------ERLSA  232

Query  274  EAAAREQLQADFSQLQAQLSREDGRQDSRPRTPGNGNGSSQDVRTDC  320
              ++ ++ Q+ F++LQ QLSRED+R+D R R+PG G++++  + T+C
Sbjct  233  LESSLQEQQTAFAELQQQLSREDSRKDYRQRAPG-GDAPAGTL-TNC  277

52) CSSP291_01685 in NC_020260


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  278 bits (1040),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 161/277 (59%), Positives = 215/277 (78%), Gaps = 2/277 (0%)

Query  1    MAKKSKRFRIGVEGATTDGRVIEREWLTQMAASYNPQVYTALINMEHIKGFTPDGTFRRF  60
            M+ K+KRFRIGVEGATTDGR I+REWL QMAASYNP VYTALIN+EHIK++ P++TF R+
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GMVEKLEAEEITEGALSGKMALYGWIAPTDDLVTMTSNWQKLFTSMEVNTSFADTGSAYL  120
            G V  L AEEI +G+L+GKMALY+ I PTD LV +  + QKLFTSMEV+T FADTG AYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAITDDPASLGTEMLQFSASAEHNPLARRKLDKDNLFTAALETLIEFEDVP-EKTSLF  179
            VGL+ TDDPASLGTEML FSASA HNPLA RK + +NLF+ A+ETLIE+E+   EK SLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  180  TRVKELLSRKGADDNARFADVNQAVETIAREHQTLAEQVSTHQADFSNKLSDMQKVVDET  239
            + V  L+++K   D+ARF+DV++AVE +A E+Q L+E+     A+ +++LS ++  ++E 
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  240  TSALSTLREQLSTQDSRSERRPNATGNNGAEQT-TDC  275
             +A++ L++QLS +DSR + R  A G +++  T T+C
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

53) ECENHK_17040 in NC_018405


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  277 bits (1038),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 160/277 (58%), Positives = 214/277 (78%), Gaps = 2/277 (0%)

Query  1    MAKKSKRFRIGVEGATTDGRVIEREWLTQMAASYNPQVYTALINMEHIKGFTPDGPFRRF  60
            M+ K+KRFRIGVEGATTDGR I+REWL QMAASYNP VYTALIN+EHIK++ P++ F R+
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GMVEKLEAEEITEGALSGKMALYGWIAPTDDLVTMTSNWQKLFTSMEVNTSFADTGSAYL  120
            G V  L AEEI +G+L+GKMALY+ I PTD LV +  + QKLFTSMEV+T FADTG AYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAITDDPASLGTEMLQFSASAEHNPLARRKLDKDNLFTAAVETLIEFEDVP-EKNSLF  179
            VGL+ TDDPASLGTEML FSASA HNPLA RK + +NLF+ AVETLIE+E+   EK SLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  180  TRVKELLSRKGADDNARFADVNQAVETIAREHQTLAEQVSTHQTDFSNKLSDMQKVVDET  239
            + V  L+++K   D+ARF+DV++AVE +A E+Q L+E+     ++ +++LS ++  ++E 
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  240  TSALSTLREQLSTQDSRSERRPNATGNNGAEQT-TDC  275
             +A++ L++QLS +DSR + R  A G +++  T T+C
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

54) YPK_2328 in NC_010465


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  239 bits (890),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 168/277 (61%), Positives = 215/277 (78%), Gaps = 6/277 (2%)

Query  1    MTVKAKKFRIGVEGATTDGRTITREWLTQMADSYNTTVYGARINMEHIKGYSPDSTFKRY  60
            MTVKAK+FRIGVEGATTDGR I REWL QMA SYN TVY A IN+EHIK+Y P+STF+RY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GDVTGLSAEEIKDGPLSGKMALYAEISPTADLVEMVKDRQKVYTSMEVNIKFADTNSAYL  120
            G VTGL AEEI+DGPL+GKMALYA+I PT  LVE+VK  QK++TSMEV+ KFADT  AYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAVTDDPASLGTEMLNFSASASANPLASRKQAPENLftaaeetliefeteqePktnll  180
            VGL+ TDDPASLGTEML FSASA+ NPLA+RKQ PENLF+ A ETLIE+E  Q+ K +L+
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ttiktlftkkqtGDDARFNDVHQAVELVA---QQVEGKFS-ALTALEQRFSELKTANGAT  236
            +++ +LFTKK+  DDARF+DVH+AVELVA   Q++  +   +L+   +R+S L ++    
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  237  QQALDELKTTLSKTDG--NFSQREKSTGNDSAILTDC  271
            Q A+ EL+  LS+ D+  ++ QR  + +  ++ LT+C
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

55) YPTB1858 in NC_006155


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  234 bits (872),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 165/278 (60%), Positives = 214/278 (77%), Gaps = 8/278 (2%)

Query  1    MTVKAKKFRIGVEGATTDGRTITREWLTQMADSYNTTVYGARINMEHIKGYSPDSTFKRY  60
            MTVKAK+FRIGVEGATTDGR I REWL QMA SYN TVY A IN+EHIK+Y P+STF+RY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GDVTGLSAEEIKDGPLSGKMALYAEISPTADLVEMVKDRQKVYTSMEVNIKFADTNSAYL  120
            G VTGL AEEI+DGPL+GKMALYA+I PT  LVE+VK  QK++TSMEV+ KFADT  AYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAVTDDPASLGTEMLNFSASASANPLASRKQAPENLftaaeetliefeteqePktnll  180
            VGL+ TDDPASLGTEML FSASA+ NPLA+RKQ PENLF+ A ETLIE+E  Q+ K +L+
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ttiktlftkkqtGDDARFNDVHQAVELVAQQVEGKLS-----AISTLERSFTELKTANDA  235
            +++ +LFTKK+  DDARF+DVH+AVELVA + + +LS     +++     ++ L ++ + 
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATE-QQNLSERTDKSLAENGERLSALESSLQE  239

Query  236  TKQELDELKITLSKTD--RDFSQREKSTGNDSAILTDC  271
             +  + EL+  LS+ D  +D+ QR  + +  ++ LT+C
Sbjct  240  QQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

56) YPTS_1895 in NC_010634


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  234 bits (871),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 165/278 (60%), Positives = 213/278 (77%), Gaps = 8/278 (2%)

Query  1    MTVKAKKFRIGVEGATTDGRTITREWLTQMADSYNTTVYGARINMEHIKGYSPDSTFKRY  60
            MTVKAK+FRIGVEGATTDGR I REWL QMA SYN TVY A IN+EHIK+Y P+STF+RY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GDVTGLSAEEIKDGPLSGKMALYAEISPTADLVEMVKDRQKVYTSMEVNIKFADTNSAYL  120
            G VTGL AEEI+DGPL+GKMALYA+I PT  LVE+VK  QK++TSMEV+ KFADT  AYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  VGLAVTDDPASLGTEMLNFSASASANPLASRKQAPENLftaaeetliefeteqePktnll  180
            VGL+ TDDPASLGTEML FSASA+ NPLA+RKQ PENLF+ A ETLIE+E  Q+ K +L+
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  ttiktlftkkqtGDDARFNDVHHAVELVAQQVEGKLS-----AISTLERSFTELKTANDA  235
            +++ +LFTKK+  DDARF+DVH AVELVA + + +LS     +++     ++ L ++ + 
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATE-QQNLSERTDKSLAENGERLSALESSLQE  239

Query  236  TKQELDELKITLSKTD--RDFSQREKSTGNDSAILTDC  271
             +  + EL+  LS+ D  +D+ QR  + +  ++ LT+C
Sbjct  240  QQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

57) Rahaq_1478 in NC_015061


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  221 bits (822),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 150/284 (53%), Positives = 206/284 (73%), Gaps = 8/284 (2%)

Query  1    MATKAKRFRICTEGATTDGREITREWIEQMAATYDPKVYGARINMEHIKGYFPDSAFRMY  60
            M+ KAKRFRI  EGATTDGREI REW+ QMAA+Y+P VY A IN+EHIK+Y+P+S+F  Y
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GDVTGVYAEEVADGALKGKLALYADIDPTPDLVSMVKARQKVYTSIEVNPSFSDTGKAYL  120
            G VTG+ AEE+ DG+L GK+ALYADI+PT  LV +VK  QK++TS+EV+  F+DTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  IGLAVTDSPASLGTEYLQFSAKAQQNPLASRKQDAGNLftaaeetafefeeeKPAAPSLF  180
            +GL+ TD PASLGTE L FSA A +NPLA+RKQ++ NLF+ A ET +E+EE +   PSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  SRVKQLLSSKSASDDARFKdvhdavevvvehveTGLKATDEKLSALEISVTERLNALEQT  240
            + V  L++ K  +DDARF DVH AVE+V  + +     TD  L+       ERL+ALE +
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAE----NGERLSALESS  236

Query  241  VKDDREQFSTLKGKLEKSAPQ-SYTQRPVSSGGGKGDAAHFTDC  283
            +++++  F+ L+ +L +  ++  Y QR   + GG + A+ +T+C
Sbjct  237  LQEQQTAFAELQQQLSREDSRKDYRQR---APGGDAPAGTLTNC  277

58) PMI1991 in NC_010554


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  219 bits (814),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 135/281 (49%), Positives = 200/281 (72%), Gaps = 16/281 (5%)

Query  1    MSKKSKPVRLCVEGATTDGRRVDREWLTQIAKNFDPTVYGARVNIDHYNYSWAP-----R  55
            M+ K+K  R+ VEGATTDGR ++REWL Q+A +++PTVY A +N++H + S  P     R
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIK-SYLPESTFNR  59

Query  56   FGDVESVYTEEIKEGALAGKLALYGVINPTPDLIELNKKRQKVYTSVEIDPSFSDTGEAY  115
            +G V ++ +EEI++G+LAGK+ALY+ I+PT  L+EL KK QK++TS+E+   F+DTG AY
Sbjct  60   YGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAY  119

Query  116  LVGLAVTDNPASLGTEMLQFSANAQSSPLSERKQSKDNVFTAAEENHFEFIDENPQSEKP  175
            LVGL+ TD+PASLGTEML FSA+A  +PL++RKQ+ +N+F+ A E  +E+  E++Q EKP
Sbjct  120  LVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIEL--EEAQDEKP  177

Query  176  GLFSIIKEMFSKKQHSDDARFTDVHQAVELCAQEVQTLSAEITALKNADQSEAVKALTQQ  235
            +LF+ +  +F+KK+++DDARF+DVH+AVEL A E Q LS E T    A+++E + AL   
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLS-ERTDKSLAENGERLSALESS  236

Query  236  LTELKTQFENTDASFSH-------RPPATGGENNSEVLTDC  269
            L E +T F + +  +S+       R  A GG+  +  LT+C
Sbjct  237  LQEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

59) Q7S_18555 in NC_017047


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  218 bits (811),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 149/284 (53%), Positives = 205/284 (73%), Gaps = 8/284 (2%)

Query  1    MATKAKRFRICTEGATTDGREITREWIEQMAATYDPKVYGARINMEHIKGYFPDSAFRMY  60
            M+ KAKRFRI  EGATTDGREI REW+ QMAA+Y+P VY A IN+EHIK+Y+P+S+F  Y
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GDVTGVYAEEVADGALKGKLALYADIDPTPDLVSMVKARQKVYTSIEVNPSFSDTGKAYL  120
            G VTG+ AEE+ DG+L GK+ALYADI+PT  LV +VK  QK++TS+EV+  F+DTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  IGLAVTDSPASLGTEYLQFSAKAQQNPLASRKQDAGNLftaaeetafefveeapaapSLF  180
            +GL+ TD PASLGTE L FSA A +NPLA+RKQ++ NLF+ A ET +E+ E     PSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  SRVKQLLSSKSASDDARFKdvhdavevvvehveIGLQATDEKLSALEISVTERLNALEQT  240
            + V  L++ K  +DDARF DVH AVE+V  + +   + TD  L+       ERL+ALE +
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAE----NGERLSALESS  236

Query  241  VKDDREQFSALKGKLEKSAPQ-SYTQRPVSSGGGKGDAAHFTDC  283
            +++++  F+ L+ +L +  ++  Y QR   + GG + A+ +T+C
Sbjct  237  LQEQQTAFAELQQQLSREDSRKDYRQR---APGGDAPAGTLTNC  277

60) Rahaq_0580 in NC_015061


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  216 bits (803),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 145/284 (52%), Positives = 204/284 (72%), Gaps = 8/284 (2%)

Query  1    MATKAKRFRICTEGATTDGREITRDWIEQMAATYDPKVYGARINMEHIKGYFPDSAFRMY  60
            M+ KAKRFRI  EGATTDGREI R+W+ QMAA+Y+P VY A IN+EHIK+Y+P+S+F  Y
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GDVTGVYAEEVADGALKGKLALYADIDPTPDLVSMVKARQKVYTSIEVNPSFSDTGKAYL  120
            G VTG+ AEE+ DG+L GK+ALYADI+PT  LV +VK  QK++TS+EV+  F+DTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  121  IGLAVTDSPASLGTEYLQFSAKAQQNPLASRKQDAGNLftaaeetafefveeapaapSLF  180
            +GL+ TD PASLGTE L FSA A +NPLA+RKQ++ NLF+ A ET +E+ E     PSLF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  181  SRVKQLLSSKSASDDARFKdvhdavevvvehveTGLQASEEKLSALENTVTQRLNALEQN  240
            + V  L++ K  +DDARF DVH AVE+V  + +   + ++  L+       +RL+ALE +
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAE----NGERLSALESS  236

Query  241  AKDDREQFSTLKGKLEKSAPQ-SYTQRPVSSGGGKGDAAHFTDC  283
             ++++  F+ L+ +L +  ++  Y QR   + GG + A+ +T+C
Sbjct  237  LQEQQTAFAELQQQLSREDSRKDYRQR---APGGDAPAGTLTNC  277

61) Y11_13251 in NC_017564


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  212 bits (788),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 140/279 (51%), Positives = 196/279 (71%), Gaps = 6/279 (2%)

Query  6    SKWFRIGVEGDTCDGRVIDADDINQMADSFDPRVYGCRINLEHLKSYSPDSTFRRYGDVS  65
            +K+FRIGVEG T DGR I+ + + QMA S++P VY   INLEH+KSY P+STF RYG V+
Sbjct  5    AKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVT  64

Query  66   ALKAETIADDSILNGKRALFAQISPTDDLVQMNKALQKIYTSMEISPNFANTGKAYLVGL  125
            +L AE I D++ L GK AL+A+I PTD LV++ K  QK++TSME+S +FA+TGKAYLVGL
Sbjct  65   GLVAEEIQDGP-LAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  126  AVTDDPASLGTEMLEFSAKAKHNPLAARKSNPENLFSAAVEVQLEFEDVAEPGITLFNVV  185
            + TDDPASLGTEML FSA A HNPLA RK NPENLFS AVE  +E+E+  +   +LF  V
Sbjct  124  GATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLFASV  183

Query  186  KSIFSRKQATDDARFNDvheavnavavhvQGQGETIEARFAAIEKQLTDNVVELKQSIEK  245
             ++F++K+ TDDARF+DVH AV+ VA + Q  +E  +  +A    +L+     L  S++ 
Sbjct  184  TALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSA----LESSLQE  239

Query  246  GKQGVTFLENKLSITENFSQAKRPESTGGNNQNDVLTDC  284
             + + + L+++LS  ++  +  R  + GG+   + LT+C
Sbjct  240  QQTAFAELQQQLSREDS-RKDYRQRAPGGDAPAGTLTNC  277

62) Y11_25401 in NC_017564


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  212 bits (788),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 140/279 (51%), Positives = 196/279 (71%), Gaps = 6/279 (2%)

Query  6    SKWFRIGVEGDTCDGRVIDADDINQMADSFDPRVYGCRINLEHLKSYSPDSTFRRYGDVS  65
            +K+FRIGVEG T DGR I+ + + QMA S++P VY   INLEH+KSY P+STF RYG V+
Sbjct  5    AKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVT  64

Query  66   ALKAETIADDSILNGKRALFAQISPTDDLVQMNKALQKIYTSMEISPNFANTGKAYLVGL  125
            +L AE I D++ L GK AL+A+I PTD LV++ K  QK++TSME+S +FA+TGKAYLVGL
Sbjct  65   GLVAEEIQDGP-LAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  126  AVTDDPASLGTEMLEFSAKAKHNPLAARKSNPENLFSAAVEVQLEFEDVAEPGITLFNVV  185
            + TDDPASLGTEML FSA A HNPLA RK NPENLFS AVE  +E+E+  +   +LF  V
Sbjct  124  GATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLFASV  183

Query  186  KSIFSRKQATDDARFNDvheavnavavhvQGQGETIEARFAAIEKQLTDNVVELKQSIEK  245
             ++F++K+ TDDARF+DVH AV+ VA + Q  +E  +  +A    +L+     L  S++ 
Sbjct  184  TALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSA----LESSLQE  239

Query  246  GKQGVTFLENKLSITENFSQAKRPESTGGNNQNDVLTDC  284
             + + + L+++LS  ++  +  R  + GG+   + LT+C
Sbjct  240  QQTAFAELQQQLSREDS-RKDYRQRAPGGDAPAGTLTNC  277

63) XNC1_3081 in NC_014228


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  212 bits (787),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 142/283 (51%), Positives = 203/283 (72%), Gaps = 11/283 (3%)

Query  1    MATKSKPFRICVEGATTDGRKIQRAWLNQIADNYDPSTYGARINQEHYN-YSWSP---RF  56
            M+ K+K FRI VEGATTDGR IQR WL Q+A +Y+P+ Y A IN EH + Y   +   R+
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  57   GDVESVYTEEIKDGKLAGKLGLYGVLSPTDELVAMNRKRQKVYTSAEINLDFADSGGAYL  116
            G V ++ +EEI+DG LAGK++LY+ + PTD LV + +K QK++TS E++  FAD+G AYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  117  VGLAVTDSPASLGTEMLQFSAGAAINPLTARKQHPDNIFTAAEETVLEFVELPADNDKPS  176
            VGL+ TD PASLGTEML FSA+AA NPL+ RKQ+P+N+F+ A ET++E+ E  A+++KPS
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEE--AQDEKPS  178

Query  177  LFSRVQAFFQKKQQSDDARFADIHQAVELCaqeqqttaetvttlvqqlGE-FSALKQKQA  235
            LF+ V A+F KK+Q+DDARF+D+H+AVEL A EQQ  +E     + + GE +SAL     
Sbjct  179  LFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQ  238

Query  236  TLEIQLNDLTTRLSRQDNNPTHRPFSQGSQHADAPTAEHLTNC  278
              +  + +L  +LSR+D   +++ + Q +  +DAP++  LTNC
Sbjct  239  EQQTAFAELQQQLSRED---SRKDYRQRAPGGDAPAGT-LTNC  277

64) PAU_04294 in NC_012962


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  211 bits (786),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 139/284 (49%), Positives = 203/284 (72%), Gaps = 13/284 (4%)

Query  1    MPKKSKPFRICVEGATTDGRKVQREWLTQIAANYDPQTYGARINMEHYNFSWSP-----R  55
            M  K+K FRI VEGATTDGR +QREWL Q+AA+Y+P  Y A IN+EH + S  P     R
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIK-SYLPESTFNR  59

Query  56   FGDVESVFTEEIKEGVLAGKLGLYGVLSPTDDLVEMNRQRQKVYTSAEINLDFADFGGAY  115
            +G V ++ +EEI++G LAGK++LY+ + PTD LVE+ ++ QK++TS E++  FAD G AY
Sbjct  60   YGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAY  119

Query  116  LVGLAVTDSPASLGTEMLQFSANAANNPLNSRKQHPNNVFTVAEETQFEFLNSPEETEKI  175
            LVGL+ TD PASLGTEML FSA+AA+NPL +RKQ+P+N+F+ A ET +E L+ +++ EK 
Sbjct  120  LVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIE-LEEAQD-EKP  177

Query  176  SLFSRVQTFFQKKQQNDDTRFTDIHQAVELCAQEQQNTAEQVTK-LSQQIGEIASLKQQQ  234
            SLF+ V ++F KK+Q DD+RF+D+H+AVEL A EQQN +E+  K L+++   +++L    
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  235  VALETQLNNLKIQLSQQDSQTTQRPVSLGTQTHDTATGEYLTNC  278
               +T + +L+ QLS++DS+   R  + G ++   +    LTNC
Sbjct  238  QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGT----LTNC  277

65) PC1_3172 in NC_012917


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  211 bits (784),  Expect = 5e-56, Method: Compositional matrix adjust.
 Identities = 133/279 (48%), Positives = 192/279 (69%), Gaps = 6/279 (2%)

Query  6    SKWFRVGVEGDTCDGRVIDANDIQNMAETFDPRVYGCRINLEHLKGLLPDSPFRRYGDVV  65
            +K+FR+GVEG T DGR I+ + + +MA +++P VY   INLEH+K+ LP+S F RYG V 
Sbjct  5    AKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVT  64

Query  66   ELKSEAIDDDSALKGKLALFAKITPTDELIALNKASQKVYTSMEIQPNFANTGKAYLVGL  125
             L +E I+D ++L GK+AL+A I PTD L+ L K +QK++TSME+  +FA+TGKAYLVGL
Sbjct  65   GLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  126  AVTDDPASLGTEMLEFSAKAKLNPLATRKSSPENLFSVATEVTLEFEDLPDVEPTLLTRV  185
            + TDDPASLGTEML FSA A  NPLA RK +PENLFS A E  +E+E+  D  P+L++ V
Sbjct  124  GATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLFASV  183

Query  186  KALFGRKQSSDDARFNDVHEAVAEVAGQVQTNADSVeqrftqleqrqqqDIATLTQKLSA  245
             ALF +K+ +DDARF+DVH AV  VA + Q  ++  ++ +++  +R    +++L   L  
Sbjct  184  TALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGER----LSALESSLQE  239

Query  246  SEQQLSDLKATLDGTESLSQKRRPPATGGEGEATLLTNC  284
             +  +++L+  L   +S  +  R  A GG++ A  LTNC
Sbjct  240  QQTAFAELQQQLSREDS-RKDYRQRAPGGDAPAGTLTNC  277

66) YPTB1761 in NC_006155


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  208 bits (775),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 137/284 (49%), Positives = 201/284 (71%), Gaps = 7/284 (2%)

Query  1    MAKKVSKYFRIGVEGDTCDGRKIEADDINQMAESFDPRVYGCRINLEHLTSYFPDSTFRR  60
            M+ K  + FRIGVEG T DGR I+ + + QMA S++P VY   INLEH+ SY+P+STF R
Sbjct  1    MTVKAKR-FRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVIGLKAETIEDDSILNGKRALFAQISPTDDLVLMNKDRQKIYTSMEIRPNFANTGKA  120
            YG V GL AE I+D++ L GK AL+A+I PTD LV + K  QK++TSME+  +FA+TGKA
Sbjct  60   YGRVTGLVAEEIQDGP-LAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEILEFSAKAKHNPLASRKSHPDNLFSAAVEVQLEFEDVAEPGVS  180
            YLVGL+ TDDPASLGTE+L FSA A HNPLA+RK +P+NLFS AVE  +E+E+  +   S
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPS  178

Query  181  LLGIVKSVFSRKQATDDARFNDvheavnavavhvqeqGETIEARFAIIEKQLTDHVVELK  240
            L++ V ++F++K+ TDDARF+DVH AV+ VA + Q+ +E  +  +A    +  +++  L 
Sbjct  179  LFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLA----ENGERLSALE  234

Query  241  QSIKQGKQGVTDLENKLSSTENFGQSKRPEATGGNNQNDVLTDC  284
             S+++ + + ++L+++LS  ++  +  R  A GG+   + LT+C
Sbjct  235  SSLQEQQTAFAELQQQLSREDS-RKDYRQRAPGGDAPAGTLTNC  277

67) BC1001_3455 in NC_015136


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  206 bits (765),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 140/293 (48%), Positives = 203/293 (70%), Gaps = 24/293 (8%)

Query  64   AVQSKWFRVAVEGATTDGRTIERDWIQQMAAQYSPAMYGARVNCEHVRGYAPMSQTQPFG  123
            +V++K+FR++VEGATTDGR I+R+W+ QMAA Y+P++Y A +N EH+++Y P S    F 
Sbjct  2    TVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPES---TFN  58

Query  124  AYGDVTGLKSEQIADGPLKGKLALYAQITPTQALVNLVKSQQKVYTSIEVAPSFADTKQA  183
             YG VTGL +E+I DGPL GK+ALYA+I PT+ALV+LVK  QK++TS+EV+  FADT +A
Sbjct  59   RYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  184  YLIGLAVTDSPASLGTEMLSFAAGQGDKNPLANRKQSPDNLFSAAEETAIEFETVAPPAG  243
            YL+GL+ TD PASLGTEML+F+A+ +  NPLANRKQ+P+NLFS A ET IE+E    + +
Sbjct  119  YLVGLGATDDPASLGTEMLAFSAS-AAHNPLANRKQNPENLFSEAVETLIELEE---AQD  174

Query  244  AAVSMFKRVGEILGIVKDKGASDDRRFADVSQAVETVATFAKELSGRAD----EFAAQLD  299
               S+F  V  ++     K  +DD RF+DV +AVE VAT  ++LS R+D    E + +L 
Sbjct  175  EKPSLFASVTALFT---KKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLS  231

Query  300  TVRAELKAEQDAHKATAEKLAELTTQLSTQPGG---QQRPLSTGTGNEHKTDC  349
            ++ + L+ +Q A       +AEL  QLS + +    +QR+ + ++     T+C
Sbjct  232  ALESSLQEQQTA-------FAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

68) LHK_00418 in NC_012559


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  206 bits (767),  Expect = 9e-55, Method: Compositional matrix adjust.
 Identities = 132/282 (47%), Positives = 203/282 (72%), Gaps = 14/282 (4%)

Query  1    MAKKSKAFRVATEGATTDGREIRREWIEQMARNYDPAVFGARVNIDHIKGILPDSPFKRY  60
            M+ K+K FR++ EGATTDGREI+REW+ QMA +Y+P+V+ A +N++HIK+ LP+S F+RY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GDVTALEAREVEDG----KLALFATIDPTDELVALTRARQKIYTSIEVVEQFADSGEAYL  116
            G VT+L A E++DG    K+AL+A I+PTD LV L +  QK++TS+EV  +FAD+G AYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  117  VGLAVTDDPASLGTEMLQFCARAGHNPLAGRKSQPGSLFTAAVPVELEFVEATGPADAGK  176
            VGL+ TDDPASLGTEML F A A+HNPLA RK +P +LF+ AV     ++E   + D   
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVET---LIELEEAQDEKP  177

Query  177  GLFATVMALLTGKGKTDDARFadhaaaiealaesqqaVPTLQGAVRALQHSGQ---SLDA  233
            +LFA+V AL+T K +TDDARF+D   A+E +A  QQ ++  + + ++L ++G+   +L++
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLS--ERTDKSLAENGERLSALES  235

Query  234  RLQSLTAELADLKTRLDSQ-PQPGF-TRQPATGGAGKTETDC  273
             LQ   + +A+L+ +L  + ++ ++  R P+ ++++ T T+C
Sbjct  236  SLQEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

69) LHK_02581 in NC_012559


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  206 bits (767),  Expect = 9e-55, Method: Compositional matrix adjust.
 Identities = 132/282 (47%), Positives = 203/282 (72%), Gaps = 14/282 (4%)

Query  1    MAKKSKAFRVATEGATTDGREIRREWIEQMARNYDPAVFGARVNIDHIKGILPDSPFKRY  60
            M+ K+K FR++ EGATTDGREI+REW+ QMA +Y+P+V+ A +N++HIK+ LP+S F+RY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GDVTALEAREVEDG----KLALFATIDPTDELVALTRARQKIYTSIEVVEQFADSGEAYL  116
            G VT+L A E++DG    K+AL+A I+PTD LV L +  QK++TS+EV  +FAD+G AYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  117  VGLAVTDDPASLGTEMLQFCARAGHNPLAGRKSQPGSLFTAAVPVELEFVEATGPADAGK  176
            VGL+ TDDPASLGTEML F A A+HNPLA RK +P +LF+ AV     ++E   + D   
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVET---LIELEEAQDEKP  177

Query  177  GLFATVMALLTGKGKTDDARFadhaaaiealaesqqaVPTLQGAVRALQHSGQ---SLDA  233
            +LFA+V AL+T K +TDDARF+D   A+E +A  QQ ++  + + ++L ++G+   +L++
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLS--ERTDKSLAENGERLSALES  235

Query  234  RLQSLTAELADLKTRLDSQ-PQPGF-TRQPATGGAGKTETDC  273
             LQ   + +A+L+ +L  + ++ ++  R P+ ++++ T T+C
Sbjct  236  SLQEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

70) LHK_02583 in NC_012559


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  206 bits (767),  Expect = 9e-55, Method: Compositional matrix adjust.
 Identities = 132/282 (47%), Positives = 203/282 (72%), Gaps = 14/282 (4%)

Query  1    MAKKSKAFRVATEGATTDGREIRREWIEQMARNYDPAVFGARVNIDHIKGILPDSPFKRY  60
            M+ K+K FR++ EGATTDGREI+REW+ QMA +Y+P+V+ A +N++HIK+ LP+S F+RY
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GDVTALEAREVEDG----KLALFATIDPTDELVALTRARQKIYTSIEVVEQFADSGEAYL  116
            G VT+L A E++DG    K+AL+A I+PTD LV L +  QK++TS+EV  +FAD+G AYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  117  VGLAVTDDPASLGTEMLQFCARAGHNPLAGRKSQPGSLFTAAVPVELEFVEATGPADAGK  176
            VGL+ TDDPASLGTEML F A A+HNPLA RK +P +LF+ AV     ++E   + D   
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVET---LIELEEAQDEKP  177

Query  177  GLFATVMALLTGKGKTDDARFadhaaaiealaesqqaVPTLQGAVRALQHSGQ---SLDA  233
            +LFA+V AL+T K +TDDARF+D   A+E +A  QQ ++  + + ++L ++G+   +L++
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLS--ERTDKSLAENGERLSALES  235

Query  234  RLQSLTAELADLKTRLDSQ-PQPGF-TRQPATGGAGKTETDC  273
             LQ   + +A+L+ +L  + ++ ++  R P+ ++++ T T+C
Sbjct  236  SLQEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

71) Q7S_07130 in NC_017047


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  205 bits (763),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 129/276 (47%), Positives = 195/276 (71%), Gaps = 3/276 (1%)

Query  6    SKWFRIGVEGDTCDGRNIEASDIQQMAAAFDPRVYGCRINLEHIRGLLPSGDFKRLGDVV  65
            +K+FRIGVEG T DGR+I+   + QMAA+++P VY   INLEHI++ LP + F+R G V 
Sbjct  5    AKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVT  64

Query  66   ELKGEKIDDDSALKGKWALFAKITPTDELAAMVKAGQKIYTSMEIRPNFANTGKAYLVGL  125
             L +E I+D ++L GK AL+A I PTD L  +VK GQK++TSME+  +FA+TGKAYLVGL
Sbjct  65   GLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  126  AVTDDPASLGTEMLEFSARAKVNPFAGKKDQPDDLFSVATIAELDFEDLPDNLLTSLTEK  185
            + TDDPASLGTEML FSA A  NP+A +K++P++LFS A  + +++E+  D+   SL   
Sbjct  124  GATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDE-KPSLFAS  182

Query  186  IKGMFSTKQTSDDARFSDVQGAITVVAEELQIAGETTAKRFSELEQEITALKGQVKTSDA  245
            + ++F+ K+ +DDARFSDV+ A+ +VA E Q  +E T K ++E  + ++AL + ++  ++
Sbjct  183  VTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQQT  242

Query  246  ALSSLKTSLDSTESFKQPKRPVSPGGNGESTFLTNC  281
            A++ L+  L   +S ++  R  +PGG++ +  LTNC
Sbjct  243  AFAELQQQLSREDS-RKDYRQRAPGGDAPAGTLTNC  277

72) Rahaq2_1533 in NC_016818


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  205 bits (761),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 128/276 (47%), Positives = 194/276 (71%), Gaps = 3/276 (1%)

Query  6    SKWFRIGVEGDTCDGRNIEASDIQQMAAAFDPRVYGCRINLEHIRGLLPSGDFKRLGDVV  65
            +K+FRIGVEG T DGR+I+   + QMAA+++P VY   INLEHI++ LP + F+R G V 
Sbjct  5    AKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVT  64

Query  66   ELKGEKIDDDSALKGKWALFAKITPTDELAAMVKAGQKIYTSMEIRPNFANTGKAYLVGL  125
             L +E I+D ++L GK AL+A I PTD L  +VK GQK++TSME+  +FA+TGKAYLVGL
Sbjct  65   GLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  126  AVTDDPASLGTEMLEFSARAKVNPFAGKKDQPDDLFSVATIAELDFEDLPDNLLTNLTEK  185
            + TDDPASLGTEML FSA A  NP+A +K++P++LFS A  + +++E+  D+   +L   
Sbjct  124  GATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDE-KPSLFAS  182

Query  186  IKGMFSTKQTSDDARFSDVQGAITVVAEELQTAGETTAKRFSELEQEITALKGQVKTSDE  245
            + ++F+ K+ +DDARFSDV+ A+ +VA E Q  +E T K ++E  + ++AL + ++  + 
Sbjct  183  VTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQQT  242

Query  246  ALSSLKTSLDSTESFKQPKRPVSPGGNGESTFLTNC  281
            A++ L+  L   +S ++  R  +PGG++ +  LTNC
Sbjct  243  AFAELQQQLSREDS-RKDYRQRAPGGDAPAGTLTNC  277

73) H650_11890 in NC_021500


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  202 bits (752),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 124/285 (44%), Positives = 189/285 (67%), Gaps = 8/285 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRIISAADIQEMADSFDPRVYGCRINLEHLRGLLPDGVFAR  60
            M+ K  +F RIGVEG T DGR I    + +MA S++P VY   INLEH+++ LP++ F R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVVELKAEKIEDDSALNGKLALFGKIAPLDTLVDMVAKGQKVYTSMEIQPNFANSGKC  120
            YG V  L AE I+D ++L GK+AL++ I P D+LV++V KGQK++TSME+  +FA++GK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLQRFKSSPENLFSVATLAELEFEDAPETLLN  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENLFS A  + +E+E+A +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDE-KP  177

Query  181  KLTDSVKAIFSRRQSSDDARFNDVHEAVTTIAERVQTSQDNAETRFASLETELTALKKSV  240
             L  SV A+F++++ +DDARF+DVH AV  +A   Q   + ++  +A     L+AL  S+
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  ADEASKTTEQFSAITATLDKTPGNTQPRRKLSTGGDGATAALTDC  285
             ++ +     F+ +   L +  +  + R++ + GGD+++++LT+C
Sbjct  238  QEQQT----AFAELQQQLSREDSRKDYRQR-APGGDAPAGTLTNC  277

74) ECENHK_12695 in NC_018405


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  199 bits (739),  Expect = 2e-52, Method: Compositional matrix adjust.
 Identities = 125/286 (44%), Positives = 188/286 (66%), Gaps = 20/286 (6%)

Query  6    SKWFRIGVEGDTCDGRVISGDDIQDMADTFDPRVYGCRINLEHIRGLMPDSPFKRYGDVT  65
            +K+FRIGVEG T DGR I  + + +MA +++P VY   INLEHI++ +P+S F+RYG VT
Sbjct  5    AKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVT  64

Query  66   ELKAEVISDGSALDGKKALFGKIAPLDELVSMVKAGQKVYTSMEIRPNFANSGKCYLVGL  125
             L AE I DG +L GK AL++ I P D LV +VK GQK++TSME+  +FA++GK YLVGL
Sbjct  65   GLVAEEIQDG-PLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  126  AVTDDPASLGTEYLEFCSRAAQNPLAGKKDQPDDVFSVASLAELEFEDVPDTMLNSLTDK  185
            + TDDPASLGTE L F + AA+NPLA +K++P+++FS A  + +E+E+  D    SL   
Sbjct  124  GATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-PSLFAS  182

Query  186  VRAIFGRKQASDDARLADVHEAVT-------TITELVQTNLTATDQRVTELETELAQLKQ  238
            V A+F +K+ +DDAR++DVH AV         ++E  + +L+  ++R++ LE+ L     
Sbjct  183  VTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL-----  237

Query  239  DVTSKAEESAQAFNDLKSSLDNTESQRQPRRELSKGGTGDELLTNC  284
                  +E   AF +L+  L   +S+++ R+  + G++    LTNC
Sbjct  238  ------QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

75) HSM_1166 in NC_010519


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  198 bits (735),  Expect = 3e-52, Method: Compositional matrix adjust.
 Identities = 122/267 (46%), Positives = 187/267 (71%), Gaps = 16/267 (5%)

Query  5    KSKWFVVATEGATTDGRNISRVWIEQMAESYNPKTYGARINIDHIKSYLYREEEPHAQAY  64
            K+K+F ++ EGATTDGR+I R W+ QMA SYNP  Y A IN++HIKSYL    E+  + Y
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYL---PESTFNRY  60

Query  65   GDVIALKTQESE-----GKLQLLAQIDPTEELIALNKKRQKVYTSIEIDINFSDTGKAYL  119
            G V +L ++E +     GK+ L A+I+PT+ L+ L KK QK++TS+E+  +F+DTGKAYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  120  VGLAVTDNPASLGTEMLQFAATAKANPFNARKLKTENLFTEAVEVCLEFNDVEPEKPTLF  179
            VGL+ TD+PASLGTEML F+A+A  NP+  RK + ENLF+EAVE  +E+++ + EKP+LF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  180  ERITAMFSQKERTDKQRFNDIDQAVMLLSKEVQHLHQKTTALETENQTLKQTLNEYTEKT  239
              +TA+F++KE+TD  RF+D+++AV L++ E Q+L ++T    +EN    + L+      
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENG---ERLSALESSL  237

Query  240  NEHSEKFAVLEKK-----PHTNYTERP  261
            +E+   FA L+++     ++ +Y +R+
Sbjct  238  QEQQTAFAELQQQLSREDSRKDYRQRA  264

76) gpO in NC_014306


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  198 bits (734),  Expect = 4e-52, Method: Compositional matrix adjust.
 Identities = 128/278 (47%), Positives = 194/278 (70%), Gaps = 6/278 (2%)

Query  3    KSKYFRVVVEGATCDGRDVTRQQIQEMAESYSPQLYGARCNLEHLKSLSPDSTFRMYGDV  62
            K+K FR+ VEGAT DGR++ R+ + +MA SY+P +Y A  NLEH+KS  P+STF  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  63   EAAKAEEIADGPLKGKLALYALIDATDEMVELNKKRQKVYSSVEINPSFADTGKAYLMGL  122
             +  AEEI DGPL GK+ALYA I++TD +VEL KK QK+++S+E++  FADTGKAYL+GL
Sbjct  64   TGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  123  AFTDSPASLGTEMLQFCANSPVNPLATRKSNPACLFSEAMETVIEFEADAPAAEAGNKFF  182
            + TD PASLGTEML F A+++ NPLA RK NP  LFSEA+ET+IE+E    A +    +F
Sbjct  124  GATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEE---AQDEKPSLF  180

Query  183  STIKTLLTKGQRQFSAEASEIRDAVELVAKSQADTLDKIE-SFSQQQRKFAD-STELSKV  240
            +++ +L+TK ++   A  S+++ AVELVA  Q +  ++ + S++++  +++   + L   
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  RDDLAALTAKLEKQDGNFNQRPTAPGGNGIDHANLADC  278
            +  +A L  +L ++D+  + R  APGG++   + L++C
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPA-GTLTNC  277

77) gpO in NC_010528


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  198 bits (734),  Expect = 4e-52, Method: Compositional matrix adjust.
 Identities = 128/285 (45%), Positives = 195/285 (69%), Gaps = 16/285 (5%)

Query  1    MAGKNPKFFRIATEGATSDGRVIDREMLVQMAASYDPDTYGARINLEHIRGIVPDGPFKA  60
            M+ K  +F RI+ EGAT+DGR I+RE LVQMAASY+P  Y A INLEHI++ +P++ F+ 
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVLALKTEEE-----GGKMRLYAQLDPTAELIAFNKARQKVFCSMEVNPDFADTGEAY  115
            YG V +L +EE      +GKM LYA+++PT  L+ + K  QK+F SMEV+  FADTG AY
Sbjct  60   YGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAY  119

Query  116  LVGLAVTDNPASLGCEMLQFSAKAKTNPLAERKQDPNNLFSEAVPVELDFPSDtpatapa  175
            LVGL+ TD+PASLG EML FSA A  NPLA+RKQ+P+NLFSEAV   +++          
Sbjct  120  LVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEA---QDEK  176

Query  176  agfaaSIKKLFARQDKSDAGNDARHADMQEAVQTIAKEVQSLGETFSKAINGVTERLDAL  235
            +++ AS+  LF++++++D   DAR +D++ AV+ +A E Q+L+E   K++    ERL AL
Sbjct  177  PSLFASVTALFTKKEQTD---DARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSAL  233

Query  236  QADQAKDKEAFSTLKGALEK---KEDFSRRPPATGGDGSVIETDC  277
            ++    ++ AF+ L+  L +   + D+ +R+P+ ++ ++ + T+C
Sbjct  234  ESSLQEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTL-TNC  277

78) Ent638_3500 in NC_009436


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  197 bits (730),  Expect = 8e-52, Method: Compositional matrix adjust.
 Identities = 125/288 (44%), Positives = 192/288 (67%), Gaps = 20/288 (6%)

Query  5    VVSKWFRIGVEGDTCDGRVINGDDIQDMADTFDPRVYGCRINLEHIKSLWPDSPFKRYGD  64
            V +K+FRIGVEG T DGR I+ + + +MA +++P VY   INLEHIKS  P+S F+RYG 
Sbjct  3    VKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGR  62

Query  65   VTEVKAEIISDDSALNGKKALFGKIAPLDELVSMVRAGQKVYTSMEIRPNFSNSGKCYLI  124
            VT + AE I +D++L GK AL++ I P D LV +V+ GQK++TSME+  +F+++GK YL+
Sbjct  63   VTGLVAEEI-QDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLV  121

Query  125  GLAVTDDPASLGTEYLEFCSRATQNPLAGKKDQPDDLFSVATLAELEFEDVPDTVLNSLT  184
            GL+ TDDPASLGTE L F + A++NPLA +K++P++LFS A  + +E+E+  D    SL 
Sbjct  122  GLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-PSLF  180

Query  185  DKVKAIFSRKQVSDDARFADVHEAVT-------EVSELVQTSLTASDSRVTELETAFAKF  237
              V A+F++K+ +DDARF+DVH AV        ++SE  + SL+ ++ R++ LE+++   
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL---  237

Query  238  KQDVTRQTEESTQAFTSLKSALDNTESHSQPRREKSKGGTGDELLTNC  285
                    +E   AF+ L+  L   +S+ + R+  + G++    LTNC
Sbjct  238  --------QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

79) NT01EI_3119 in NC_012779


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  195 bits (724),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 130/275 (48%), Positives = 198/275 (72%), Gaps = 16/275 (5%)

Query  13   WVRIGVEGATCDRRNLERQWLEQMAAAYDPKVYGARINLEHLKGILPDGPFQRYGDVAML  72
            + RIGVEGAT D R+++R+WL QMAA+Y+P VY A INLEH+K+ LP++ F+RYG V+ L
Sbjct  7    RFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVTGL  66

Query  73   KTEEIAEEGLLKGKLALYARLVPTDQLIEMNRKGQKVYSSIEVDPKFADTGKAYLVGLAV  132
             +EEI ++G L GK+ALYA + PTD L+E+ +KGQK+++S+EV  KFADTGKAYLVGL+ 
Sbjct  67   VAEEI-QDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGLGA  125

Query  133  TDDPASLGTEMLSFCAGAQSNPLASRKRSPDNVFSVAIetelefeeveerggetlfTRIR  192
            TDDPASLGTEML+F A+A  NPLA+RK++P+N+FS A+ET +E+EE ++     + + + 
Sbjct  126  TDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLFAS-VT  184

Query  193  ALLSKKQNRDDQQMADVHQAVEEVASFCGEQVDQIRSE---------LTELQMQHQQLQT  243
            AL++KK++ DD + +DVH+AVE VA+   +Q    R++         L+ L+   Q+ QT
Sbjct  185  ALFTKKEQTDDARFSDVHKAVELVAT--EQQNLSERTDKSLAENGERLSALESSLQEQQT  242

Query  244  DYSALKTLLAKQPATL---PRQPATGGGTDLKTDC  275
             ++ L+  L+++ +      R P+ ++ ++  T+C
Sbjct  243  AFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

80) Rahaq2_3327 in NC_016818


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  195 bits (723),  Expect = 3e-51, Method: Compositional matrix adjust.
 Identities = 119/280 (43%), Positives = 187/280 (67%), Gaps = 9/280 (3%)

Query  3    KSKPFRVAVEGATCDGRTLERQHIVQMAQRFNPTVYGARVNLEHLRGYSPNSDFRAYGDV  62
            K+K FR++VEGAT DGR ++R+ +VQMA  +NPTVY A +NLEH+++Y P+S F  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  63   ISVKAEEITEEPLKGKMGLYVQVDATDDLVALKKSRQKIYHSIEVHPSFADTGEAYLMGL  122
             ++ AEEI + PL GKM+LY ++++TD LV L K  QK++ S+EV   FADTG AYL+GL
Sbjct  64   TGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  123  ACTDSPASLGTEMMEFCAKNSVNPLSSRKHDQACFFTAAVESTMEFEDEQPPQDEGKNFF  182
            + TD PASLGTEM+ F A  + NPL++RK++   +F+ AVE+ +E+E+   +QDE  ++F
Sbjct  124  GATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEE---AQDEKPSLF  180

Query  183  ARIKALLGGTQQQFSQQNGENREAIEAIAESQGKLLDSTTQLSAAVKGKADATE--LESL  240
            A + AL+   +Q    + ++ + A+E +A  Q +L + T +  A    +  A E  L+  
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  241  RKDFKALEEKLKGQDA-EQYNQRPAATGGDGQSTQHLADC  279
            +  F  L+++L  +D+  +Y QR++  GGD+ +   L++C
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAP--GGDAPAGT-LTNC  277

81) BTI_1969 in NC_021173


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  191 bits (709),  Expect = 3e-50, Method: Compositional matrix adjust.
 Identities = 118/217 (55%), Positives = 156/217 (72%), Gaps = 15/217 (6%)

Query  1    MASKTKFFRVAVEGATVDGREIKREWLTQMAKHYDPKLYGARVNVEHIKGWAPLSANNPF  60
            M+ K+K FR++VEGAT DGREI+REWL QMA  Y+P +Y A +N+EHIK+  P   ++ F
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLP---ESTF  57

Query  61   GAYGDVIALKAAEIEDGPLKGKMALYAQIDPTDELVALSKKRQKLFTSIEINPDFADIGE  120
              YG V +L A EI+DGPL GKMALYA+I+PTD LV L KK QKLFTS+E++  FAD G 
Sbjct  58   NRYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGK  117

Query  121  AYLVGLAATDDPASLGTEALQFAA-----------KRSNNLYSPACETAIEFEGA-AETA  168
            AYLVGL+ATDDPASLGTE L F+A           + ++NL+S A ET IE+E A  E +
Sbjct  118  AYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKP  177

Query  169  GLKEWVKGLFARNRENDDERFADVREAVEQVATHAHH  205
            +L   V +LF+++ + DD RF+DV+ AVE VAT+ ++
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQN  214

82) KPHS_40180 in NC_016845


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  191 bits (710),  Expect = 3e-50, Method: Compositional matrix adjust.
 Identities = 126/288 (44%), Positives = 187/288 (65%), Gaps = 24/288 (8%)

Query  6    SKWFRIGVEGDTCDGRVISATDIQEMAETFDPRVYGCRINLEHLKGILPDGPFSRYGDVV  65
            +K+FRIGVEG T DGR I    + +MA +++P VY   INLEH+K+ LP++ F+RYG V 
Sbjct  5    AKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVT  64

Query  66   ELKSEKIDDDSVLKGKLALFAKITPTDDLIAMNKKLQKVYTSMEIQPNFANSGKCYLVGL  125
             L +E I+D++ L GK+AL+A I PTD L+ + KK QK++TSME+  +FA++GK YLVGL
Sbjct  65   GLVAEEIQDGP-LAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  126  AVTDDPASLGTEYLEFCRGAKFNPLNRFKAEPGNLIS--VATLAELEFEDQAENVFTALS  183
            + TDDPASLGTE L F  +A  NPL   K +P NL+S  V TL ELE E Q E+   +L 
Sbjct  124  GATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELE-EAQDEK--PSLF  180

Query  184  DKVKAIFSRKQASDDARFQDVHEAVTTV-------SEHVQENLTATEQRLATLENAFATL  236
              V A+F++K+ +DDARF DVH AV  V       SE+ + +L+   +RL++LE+++   
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL---  237

Query  237  KKDVTTKADQTSQAFSQLKTSLDKTESTTQPRRKLSTGGGGDELLTDC  284
                    ++   AF++L+  L + +S  + R++ + G++    LT+C
Sbjct  238  --------QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

83) A225_3960 in NC_018106


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  191 bits (708),  Expect = 4e-50, Method: Compositional matrix adjust.
 Identities = 126/288 (44%), Positives = 187/288 (65%), Gaps = 24/288 (8%)

Query  6    SKWFRIGVEGDTCDGRVISATDIQEMAETFDPRVYGCRINLEHLKGILPDGPFSRYGDVV  65
            +K+FRIGVEG T DGR I    + +MA +++P VY   INLEH+K+ LP++ F+RYG V 
Sbjct  5    AKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVT  64

Query  66   ELKSEKIDDDSVLKGKLALFAKITPTDDLIAMNKKLQKVYTSMEIQPNFANSGKCYLVGL  125
             L +E I+D++ L GK+AL+A I PTD L+ + KK QK++TSME+  +FA++GK YLVGL
Sbjct  65   GLVAEEIQDGP-LAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  126  AVTDDPASLGTEYLEFCRGAKFNPLNRFKAEPGNLIS--VATLAELEFEDQAENVFTALS  183
            + TDDPASLGTE L F  +A  NPL   K +P NL+S  V TL ELE E Q E+   +L 
Sbjct  124  GATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELE-EAQDEK--PSLF  180

Query  184  DKVKAIFSRKQASDDARFQDVHEAVTTV-------SEHVQENLTATEQRLATLENAFATL  236
              V A+F++K+ +DDARF DVH AV  V       SE+ + +L+   +RL++LE+++   
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL---  237

Query  237  KQDVTTKADQTSQAFSQLKTSLDKTESTAQPRRKLSTGGGGDELLTDC  284
                    ++   AF++L+  L + +S  + R++ + G++    LT+C
Sbjct  238  --------QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

84) Sbal195_2915 in NC_009997


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  191 bits (709),  Expect = 4e-50, Method: Compositional matrix adjust.
 Identities = 118/277 (43%), Positives = 184/277 (67%), Gaps = 8/277 (2%)

Query  1    MAKKSKFFRVFTEGHTTDGRVVERQWITDIVETYNTAKYGARIWLEHIRGITPDSAFKAY  60
            M+ K+K FR+  EG TTDGR ++R+W+ ++  +YN + Y A I LEHI++  P+S+F+ Y
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GDVTAVKAEEVD-----GKLTLFAQIEPTDELIAMNQKKQKVYTSVEIDPDFAKTGKCYL  115
            G VT++ AEE++     GK++L+A+IEPTD L+ + +K QK++TS+E+   FA TGK YL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  116  SGLAVTDSPASLGTEMLAFSATCKDNPLNSRKQRPENLFTSAvev-dfefeevsdePGLF  174
             GL+ TD PASLGTEMLAFSA+  +NPL +RKQ PENLF+ AVE      E   + P+LF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  175  AKVKALLGKNKAEAKTDFADVHQAVEEIAQAVAHAETQFGSKVTKGMEDLTKLQTDFNEL  234
            A V AL+ K+     + F+DVH+AVE +A    +   + +  ++   E L+ L++ ++E 
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  235  STQFNALKTQLEKEEPTGQ--RRSPATGGDTNMKTDC  269
             T F  L+ QL +E++  +  +R+P+ ++ +   T+C
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

85) Sbal678_2923 in NC_016901


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  191 bits (709),  Expect = 4e-50, Method: Compositional matrix adjust.
 Identities = 118/277 (43%), Positives = 184/277 (67%), Gaps = 8/277 (2%)

Query  1    MAKKSKFFRVFTEGHTTDGRVVERQWITDIVETYNTAKYGARIWLEHIRGITPDSAFKAY  60
            M+ K+K FR+  EG TTDGR ++R+W+ ++  +YN + Y A I LEHI++  P+S+F+ Y
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GDVTAVKAEEVD-----GKLTLFAQIEPTDELIAMNQKKQKVYTSVEIDPDFAKTGKCYL  115
            G VT++ AEE++     GK++L+A+IEPTD L+ + +K QK++TS+E+   FA TGK YL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  116  SGLAVTDSPASLGTEMLAFSATCKVNPLNSRKQRPENLFTSAvev-dfefeevsdePGLF  174
             GL+ TD PASLGTEMLAFSA+   NPL +RKQ PENLF+ AVE      E   + P+LF
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLF  180

Query  175  AKVKALLGKNKAEAKTDFADVHQAVEEIAQAVAHAETQFGSKITKGMEDLTKLQTDFNEL  234
            A V AL+ K+     + F+DVH+AVE +A    +   + +  ++   E L+ L++ ++E 
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  235  STQFNALKTQLEKEEPQGQ--RRSPATGGDTNMKTDC  269
             T F  L+ QL +E+++ +  +R+P+ ++ +   T+C
Sbjct  241  QTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

86) MU9_2821 in NC_020418


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  190 bits (704),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 113/219 (52%), Positives = 160/219 (74%), Gaps = 9/219 (4%)

Query  1    MPVTSKPVRICTEGATTDGRVIQRSWLTDIEKNYDPNVYGARINLEHIKYEWMP-----R  55
            M V +K  RI  EGATTDGR IQR WL ++  +Y+P VY A INLEHIK   +P     R
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIK-SYLPESTFNR  59

Query  56   FGDVESVYTEEITDGALKGKLALYATLKPTADLIEMNKKRQKVYTSAEIAPKFADTGAAY  115
            +G V ++ +EEI DG+L GK+ALYA + PT  L+E+ KK QK++TS E++ KFADTG AY
Sbjct  60   YGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAY  119

Query  116  LVGLAVTDNPASLGTQMLQFSQGAGESPFADRKQSKDNVITLAEETVIEFTEDKPDEPKV  175
            LVGL+ TD+PASLGT+ML FS +A+++P+A+RKQ+ +N+++ A ET+IE+ E + +    
Sbjct  120  LVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK---  176

Query  176  PSLFTRITEVLTGKGKQDDARFHDVHQSVELIAKAVEAI  214
            PSLF+ +T ++T K + DDARF DVH++VEL+A   + +
Sbjct  177  PSLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNL  215

87) BP1026B_I0170 in NC_017831


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  189 bits (702),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 116/217 (54%), Positives = 155/217 (72%), Gaps = 15/217 (6%)

Query  1    MASKTKFFRVAVEGATVDGREIKREWLTQMAKHYDPKLYGARVNVEHIKGWAPLSANNPF  60
            M+ K+K FR++VEGAT DGREI+REWL QMA  Y+P +Y A +N+EHIK+  P   ++ F
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLP---ESTF  57

Query  61   GAYGDVIALKAAEIEDGPLKGKMALYAQIDPTDELVALSKKRQKLFTSIEINPDFADIGE  120
              YG V +L A EI+DGPL GKMALYA+I+PTD LV L KK QKLFTS+E++  FAD G 
Sbjct  58   NRYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGK  117

Query  121  AYLVGLAATDDPASLGTEALQFAA-----------KRSNNLYTPACETAIEFEGA-AETA  168
            AYLVGL+ATDDPASLGTE L F+A           + ++NL++ A ET IE+E A  E +
Sbjct  118  AYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKP  177

Query  169  GLKEWVKGLFARNRENDDERFADVREAVERVAIHAHH  205
            +L   V +LF+++ + DD RF+DV+ AVE VA + ++
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQN  214

88) BTH_II1351 in NC_007650


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  189 bits (701),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 116/217 (54%), Positives = 156/217 (72%), Gaps = 15/217 (6%)

Query  1    MASKTKFFRVAVEGATVDGREIKREWLTQMAKHYDPKLYGARVNVEHIKGWAPLSANNPF  60
            M+ K+K FR++VEGAT DGREI+REWL QMA  Y+P +Y A +N+EHIK+  P   ++ F
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLP---ESTF  57

Query  61   GAYGDVIALKAAEIEDGPLKGKMALYAQIDPTDELVALSKKRQKLFTSIEINPDFADIGE  120
              YG V +L A EI+DGPL GKMALYA+I+PTD LV L KK QKLFTS+E++  FAD G 
Sbjct  58   NRYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGK  117

Query  121  AYLVGLAATDDPASLGTEALQFAA-----------KRSNNLYTPACETAIEFEGA-AETA  168
            AYLVGL+ATDDPASLGTE L F+A           + ++NL++ A ET IE+E A  E +
Sbjct  118  AYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKP  177

Query  169  GLKEWVKGLFARNRENDDERFADVREALERVATHAHH  205
            +L   V +LF+++ + DD RF+DV+ A+E VAT+ ++
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQN  214

89) NTHI1887 in NC_007146


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  189 bits (703),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 123/263 (47%), Positives = 183/263 (70%), Gaps = 13/263 (4%)

Query  1    MAKKSKWVVVATEGATTDGRTIQRNWISEMAANYDPKKYGARVNLEHIKWRYMWNDDPHS  60
            M+ K+K+  ++ EGATTDGR IQR+W+ +MAA+Y+P  Y A +NLEHIK  Y+   ++  
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKS-YL--PESTF  57

Query  61   KCYGDVIGLKTEENAEG----KLQLLAQIDPTDDLIKLNKDRQKIYTSIECDPNFADTGE  116
            + YG V GL +EE  +G    K+ L A+I+PTD L+ L K  QK++TS+E   +FADTG 
Sbjct  58   NRYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGK  117

Query  117  AYLVGLAVTDNPASLGTEMLVFSAGASANPLNNRKEKADNIFTAAVETELEFVE---ETQ  173
            AYLVGL+ TD+PASLGTEML FSA+A+ NPL NRK++++N+F+ AVET +E+ E   E  
Sbjct  118  AYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKP  177

Query  174  SIFEKIKGLFAKKEKSDDERFSDQTQAIELLAEQTKETLEKLTALSDDLAKQKAEIEEMK  233
            S+F  + +LF+KKE++DD RFSD  +A+EL+A + ++  E+       LA +   +  + 
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSER---TDKSLAENGERLSALE  234

Query  234  ASNAEIQATFAELQKPVEPENPR  256
            +S  E Q++FAELQ+ +  E++R
Sbjct  235  SSLQEQQTAFAELQQQLSREDSR  257

90) AvCA6_37600 in NC_021150


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  189 bits (701),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 122/280 (44%), Positives = 202/280 (73%), Gaps = 13/280 (4%)

Query  5    RSKWFRVAVEGATTDGRNIERAWIEDMAATYDRAKYGARIWMEHYRSALPDSPFRAYGDV  64
            ++K+FR++VEGATTDGR+I+R W+ +MAA+Y+ + Y A I +EH +S LP+S F  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  65   LAVKAEEVEIDG-EKRLALFAQIEPTDDLVNLVNKLKQKIFTSIEVLEKFAGTGKAYLMG  123
             ++ AEE++ +    ++AL+A+IEPTD LV+LV+K  QK+FTS+EV  KFA+TGKAYL+G
Sbjct  64   TGLVAEEIQDGPLAGKMALYADIEPTDALVELVKK-GQKLFTSMEVSTKFADTGKAYLVG  122

Query  124  LAVTDSPASIGTEMLAFAQQHPDANPLKGRKQNADSLFSVATETLLEFEEI-EDKPSVGA  182
            L+ TD PAS+GTEMLAF+   ++ NPL  RKQN+++LFS A ETL+E+EE  ++KPS   
Sbjct  123  LGATDDPASLGTEMLAFSASAAH-NPLANRKQNPENLFSEAVETLIELEEAQDEKPS---  178

Query  183  ALFGRVQELLKGKQVRDDGEFAQIGKAVEALA---EHFKEQAE-IFADEQRNTAELTTTV  238
             LF+ V  L+  K+  DD+ F+++ KAVE +A   +++ E+++  +A++    + L +++
Sbjct  179  -LFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  239  QQLSADLAALKTTLGTTQDHRQ-QQRPTASGGNGRITTDC  277
            Q+  + +A L+  L+  + +++ +QR+ ++++ +   T+C
Sbjct  238  QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

91) AvCA_37600 in NC_021149


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  189 bits (701),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 122/280 (44%), Positives = 202/280 (73%), Gaps = 13/280 (4%)

Query  5    RSKWFRVAVEGATTDGRNIERAWIEDMAATYDRAKYGARIWMEHYRSALPDSPFRAYGDV  64
            ++K+FR++VEGATTDGR+I+R W+ +MAA+Y+ + Y A I +EH +S LP+S F  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  65   LAVKAEEVEIDG-EKRLALFAQIEPTDDLVNLVNKLKQKIFTSIEVLEKFAGTGKAYLMG  123
             ++ AEE++ +    ++AL+A+IEPTD LV+LV+K  QK+FTS+EV  KFA+TGKAYL+G
Sbjct  64   TGLVAEEIQDGPLAGKMALYADIEPTDALVELVKK-GQKLFTSMEVSTKFADTGKAYLVG  122

Query  124  LAVTDSPASIGTEMLAFAQQHPDANPLKGRKQNADSLFSVATETLLEFEEI-EDKPSVGA  182
            L+ TD PAS+GTEMLAF+   ++ NPL  RKQN+++LFS A ETL+E+EE  ++KPS   
Sbjct  123  LGATDDPASLGTEMLAFSASAAH-NPLANRKQNPENLFSEAVETLIELEEAQDEKPS---  178

Query  183  ALFGRVQELLKGKQVRDDGEFAQIGKAVEALA---EHFKEQAE-IFADEQRNTAELTTTV  238
             LF+ V  L+  K+  DD+ F+++ KAVE +A   +++ E+++  +A++    + L +++
Sbjct  179  -LFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  239  QQLSADLAALKTTLGTTQDHRQ-QQRPTASGGNGRITTDC  277
            Q+  + +A L+  L+  + +++ +QR+ ++++ +   T+C
Sbjct  238  QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

92) O in NC_012560


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  189 bits (701),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 122/280 (44%), Positives = 202/280 (73%), Gaps = 13/280 (4%)

Query  5    RSKWFRVAVEGATTDGRNIERAWIEDMAATYDRAKYGARIWMEHYRSALPDSPFRAYGDV  64
            ++K+FR++VEGATTDGR+I+R W+ +MAA+Y+ + Y A I +EH +S LP+S F  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  65   LAVKAEEVEIDG-EKRLALFAQIEPTDDLVNLVNKLKQKIFTSIEVLEKFAGTGKAYLMG  123
             ++ AEE++ +    ++AL+A+IEPTD LV+LV+K  QK+FTS+EV  KFA+TGKAYL+G
Sbjct  64   TGLVAEEIQDGPLAGKMALYADIEPTDALVELVKK-GQKLFTSMEVSTKFADTGKAYLVG  122

Query  124  LAVTDSPASIGTEMLAFAQQHPDANPLKGRKQNADSLFSVATETLLEFEEI-EDKPSVGA  182
            L+ TD PAS+GTEMLAF+   ++ NPL  RKQN+++LFS A ETL+E+EE  ++KPS   
Sbjct  123  LGATDDPASLGTEMLAFSASAAH-NPLANRKQNPENLFSEAVETLIELEEAQDEKPS---  178

Query  183  ALFGRVQELLKGKQVRDDGEFAQIGKAVEALA---EHFKEQAE-IFADEQRNTAELTTTV  238
             LF+ V  L+  K+  DD+ F+++ KAVE +A   +++ E+++  +A++    + L +++
Sbjct  179  -LFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  239  QQLSADLAALKTTLGTTQDHRQ-QQRPTASGGNGRITTDC  277
            Q+  + +A L+  L+  + +++ +QR+ ++++ +   T+C
Sbjct  238  QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

93) B565_2459 in NC_015424


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  189 bits (700),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 118/273 (44%), Positives = 182/273 (67%), Gaps = 9/273 (3%)

Query  3    KSKFFRVAVEGGTTDGRAITREWIEQMAQRYNQATYGARVNMEHIRGLDPNGLFKMYGDI  62
            K+K FR++VEG+TTDGR I REW+ QMA  YN + Y A +N+EHI++  P++ F+ YG +
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  63   TAAKTEEVTIEG-EQRLALFVQIDPTPELIALNKKRQKVYTSIEIHPNLNDKG-AYMMGL  120
            T+  +EE+       ++AL+ +I+PT  L+ L KK QK++TS+E+  ++ D G AY++GL
Sbjct  64   TGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  121  AVTDSPASLGTEMLQFCSKAAVNPLADRKYHPECLFTEALETVIEFDDEQEKGPGLLERI  180
            + TD PASLGTEML F + AA NPLA+RK +PE LF+EA+ET+IE+++ Q+  P+L+  +
Sbjct  124  GATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLFASV  183

Query  181  SAIFTSHKQQSTADFSEVHQAVEAVAKEVTSLD-------TDLQTKFNELTARQTETANA  233
            +A+FT   Q   A FS+VH+AVE VA E  +L        ++   +++ L +   E   A
Sbjct  184  TALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQQTA  243

Query  234  LADLTTQLERQEDFSHKRQPATGDDGTKPTNTD  266
            +A+L  QL R++   + RQ A G+D+   T T+
Sbjct  244  FAELQQQLSREDSRKDYRQRAPGGDAPAGTLTN  276

94) KPN_04881 in NC_009648


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  189 bits (701),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 126/288 (44%), Positives = 185/288 (65%), Gaps = 24/288 (8%)

Query  6    SKWFRIGVEGDTCDGRVISATDIQEMAETFDPRVYGCRINLEHLKGILPDGPFSRYGDVV  65
            +K+FRIGVEG T DGR I    + +MA +++P VY   INLEH+K+ LP++ F+RYG V 
Sbjct  5    AKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVT  64

Query  66   ELKSEKIDDDSVLKGKLALFAKITPTDDLIAMNKKLQKVYTSMEIQPNFANSGKCYLVGL  125
             L +E I+D++ L GK+AL+A I PTD L+ + KK QK++TSME+  +FA++GK YLVGL
Sbjct  65   GLVAEEIQDGP-LAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  126  AVTDDPASLGTEYLEFCRGAKFNPLNRFKAEPGNLIS--VATLAELEFEDQAENVFTALS  183
            + TDDPASLGTE L F  +A  NPL   K +P NL+S  V TL ELE E Q E+   +L 
Sbjct  124  GATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELE-EAQDEK--PSLF  180

Query  184  DKVKAIFSRKQASDDARFQDVHEAVTTV-------SEHVQENLTATEQRLATLENAFATL  236
              V A+F++K+ +DDARF DVH AV  V       SE+ + +L+   +RL++LE+++   
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL---  237

Query  237  KQDVTTKADQTSQAFSKLKTSLDNTESTTQPRRKLSTGGGGDELLTDC  284
                    ++   AF+ L+  L   +S  + R++ + G++    LT+C
Sbjct  238  --------QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

95) BPSL0171 in NC_006350


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  188 bits (697),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 115/217 (53%), Positives = 155/217 (72%), Gaps = 15/217 (6%)

Query  1    MASKTKFFRVAVEGATVDGREIKREWLTQMAKHYDPKLYGARVNVEHIKGWAPLSANNPF  60
            M+ K+K FR++VEGAT DGREI+REWL QMA  Y+P +Y A +N+EHIK+  P   ++ F
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLP---ESTF  57

Query  61   GAYGDVIALKAAEIEDGPLKGKMALYAQIDPTDELVALSKKRQKLFTSIEINPDFADIGE  120
              YG V +L A EI+DGPL GKMALYA+I+PTD LV L KK QKLFTS+E++  FAD G 
Sbjct  58   NRYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGK  117

Query  121  AYLVGLAATDDPASLGTEALQFAA-----------KRSNNLYTPACETAIEFEGA-AETA  168
            AYLVGL+ATDDPASLGTE L F+A           + ++NL++ A ET IE+E A  E +
Sbjct  118  AYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKP  177

Query  169  GLKEWVKGLFARNRENDDERFADVREALERVAIHAHH  205
            +L   V +LF+++ + DD RF+DV+ A+E VA + ++
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQN  214

96) MYA_3993 in NC_017921


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  188 bits (697),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 131/280 (47%), Positives = 178/280 (64%), Gaps = 20/280 (7%)

Query  7    KTKFFRIATEGATTDGRTIDREMLEQMASSYDPKTYGARINMEHIRGYTPDSTFRAYGDV  66
            K+K FRI+ EGATTDGR I+RE L QMA+SY+P  Y A IN+EHI++Y P+STF  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  67   IALKAEEQD-----GKMRLLAQLSPTKDLVALTNEQRQKVYTSMEVDPDFAGTGEAYLVG  121
             +L AEE +     GKM L A++ PT  LV L +   QK++TSMEV   FA+TG AYLVG
Sbjct  64   TGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKG-QKLFTSMEVSTKFADTGKAYLVG  122

Query  122  LAVTDNPASLGTEMLQFSAK--HKAYDARKQRPENLFSAAVEADIDFEDEVPRTGDAGKS  179
            L+ TD+PASLGTEML FSA   H++   RKQ PENLFS AVE+ I++E+    + D   S
Sbjct  123  LGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEE----AQDEKPS  178

Query  180  LFSKVRDLLNRKGATDDQRFSDLSQSVVALAENQSQVLEQ-----LEKFNTNVDELKRAQ  234
            LF+ V  L+ +K  TDD RFSD+ +  V L   + Q L +     L      +  L  + 
Sbjct  179  LFASVTALFTKKEQTDDARFSDV-HKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  235  QDSDKRHSELVRKLSRTDSSSQ--QRPTSTGSDNGAQTDC  272
            Q+ +   +EL ++LSR DS  +  QR+ + ++  G+ T+C
Sbjct  238  QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

97) SE451236_19705 in NC_021820


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  188 bits (698),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 125/284 (45%), Positives = 183/284 (65%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRIISASDIQEMAETYDPRVYGCRINLEHIRGLLPDGMFKR  60
            M+ K  +F RIGVEG T DGR I    + +MA +Y+P VY   INLEHI++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVVELKAEKIDDDSALNGKWALFARITPTDDLIAMNKAAQKVYTSMEIQPNFGNSGKC  120
            YG V  L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +F+++GK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRKAKHNPLQRFKASPENLFSVATLAELEFEDVPDTVLN  180
            YLVGL+ TDDPASLGTE L F   A HNPL   K +PENLFS A  + +E+E+  D    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  SLADKVKAIFSRKQVSDDARLNDVHEAVTTVSEHVQTSLTAQDKRLSDMETALATFKQEL  240
            SL   V A+F++K+ +DDAR++DVH AV  V+ + Q      DK L++    L++    L
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSA----L  233

Query  241  TGKVEETSQAFSALKTTLDKTESFSQPRRTKASGGGGDELLTDC  284
             + ++E   AF+ L+  L + +S  + R+  ++G++    LT+C
Sbjct  234  ESSLQEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

98) CFSAN001992_20205 in NC_020307


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  188 bits (696),  Expect = 4e-49, Method: Compositional matrix adjust.
 Identities = 128/287 (45%), Positives = 187/287 (66%), Gaps = 13/287 (4%)

Query  1    MAKKVSKFFRIGVEGDTCDGRIISASDIQEMAETYDPRVYGCRINLEHLRGLLPDGIFKR  60
            M+ K  +F RIGVEG T DGR I    + +MA +Y+P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVVELKAEKIDDDSALNGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V  L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRNAKHNPLNRFKANPENLISAA--TLAEL-EFEDQPET  177
            YLVGL+ TDDPASLGTE L F  +A HNPL   K NPENL+S A  TL EL E +D+  +
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPS  178

Query  178  VFTALTDKVKAIFSRKQVSDDARMNDVHEAVTAVSEHVQTNLTAQDKRLSDMETALATFK  237
            +F++    V A+F++K+ +DDAR +DVH AV  V+ + Q      DK L++    L++  
Sbjct  179  LFAS----VTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSA--  232

Query  238  QELTGKVEETSQAFSALKTTLDKTESFSQPRRTKASGGGGDELLTDC  284
              L + ++E   AF+ L+  L + +S  + R+  ++G++    LT+C
Sbjct  233  --LESSLQEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

99) STMMW_31981 in NC_016854


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  188 bits (696),  Expect = 4e-49, Method: Compositional matrix adjust.
 Identities = 125/284 (45%), Positives = 182/284 (65%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRIISASDIQEMAETYDPRVYGCRINLEHIRGLLPDGMFKR  60
            M+ K  +F RIGVEG T DGR I    + +MA +Y+P VY   INLEHI++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVVELKAEKIDDDSALNGKWALFARITPTDDLIAMNKAAQKVYTSMEIQPNFGNSGKC  120
            YG V  L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +F+++GK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRKAKHNPLQRFKASPENVFSAATLAELEFEDVPDTVLN  180
            YLVGL+ TDDPASLGTE L F   A HNPL   K +PEN+FS A  + +E+E+  D    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  SLADKVKAIFSRKQVSDDARMSDVHEAVTAVSEHVQTSLTAQDKRLSDMETALATFKQEL  240
            SL   V A+F++K+ +DDAR SDVH AV  V+ + Q      DK L++    L++    L
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSA----L  233

Query  241  TGKVEETSQAFSALKTTLDKTESFSQPRRTKASGGGGDELLTDC  284
             + ++E   AF+ L+  L + +S  + R+  ++G++    LT+C
Sbjct  234  ESSLQEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

100) BPSS1064 in NC_006351


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  187 bits (693),  Expect = 6e-49, Method: Compositional matrix adjust.
 Identities = 114/217 (53%), Positives = 155/217 (72%), Gaps = 15/217 (6%)

Query  1    MASKSKFFRVAVEGATVDGREIKREWLTQMAKHYDPKLYNARVNVEHIKGWAPLSANNPF  60
            M+ K+K FR++VEGAT DGREI+REWL QMA  Y+P +Y A +N+EHIK+  P   ++ F
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLP---ESTF  57

Query  61   GAYGDVIALKAAEIEDGPLKGKMALFAQIDPTDELVALSKKRQKLFTSIEINPDFADIGE  120
              YG V +L A EI+DGPL GKMAL+A+I+PTD LV L KK QKLFTS+E++  FAD G 
Sbjct  58   NRYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGK  117

Query  121  AYLVGLAATDDPASLGTEALQFAA-----------KRSNNLYTPACETAIEFEGA-AETA  168
            AYLVGL+ATDDPASLGTE L F+A           + ++NL++ A ET IE+E A  E +
Sbjct  118  AYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKP  177

Query  169  GLKEWVKGLFARNRENDDERFADVREALERVAIHAHH  205
            +L   V +LF+++ + DD RF+DV+ A+E VA + ++
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQN  214

101) SBG_2829 in NC_015761


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  187 bits (694),  Expect = 6e-49, Method: Compositional matrix adjust.
 Identities = 126/284 (45%), Positives = 182/284 (65%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRIISASDIQEMAETYDPRVYGCRINLEHIRGLLPDGMFKR  60
            M+ K  +F RIGVEG T DGR I    + +MA +Y+P VY   INLEHI++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVVELKAEKIDDDSALNGKWALFARITPTDDLIAMNKAAQKVYTSMEIQPNFGNTGKC  120
            YG V  L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +F++TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRKAKHNPLQRFKASPENVFSVATLAELEFEDVPDTVLN  180
            YLVGL+ TDDPASLGTE L F   A HNPL   K +PEN+FS A  + +E+E+  D    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  SLADKVKAIFSRKQVSDDARMSDVHEAVTAVSEHVQTSLTAQDKRLSDMETALATFKQEL  240
            SL   V A+F++K+ +DDAR SDVH AV  V+ + Q      DK L++    L++    L
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSA----L  233

Query  241  TGKVEETSQAFSALKTTLDKTESFSQPRRTKASGGGGDELLTDC  284
             + ++E   AF+ L+  L + +S  + R+  ++G++    LT+C
Sbjct  234  ESSLQEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

102) CFU_0995 in NC_015856


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  187 bits (693),  Expect = 9e-49, Method: Compositional matrix adjust.
 Identities = 117/268 (44%), Positives = 190/268 (71%), Gaps = 11/268 (4%)

Query  60   FRVATEGATTDGRKIDRSTIEQIAKTFNPATYGARIWLEHIRGTMPDGSFRAYGDVLAVK  119
            FR++ EGATTDGR I+R  + Q+A ++NP+ Y A I LEHI++ +P+++F  YG V ++ 
Sbjct  8    FRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVTGLV  67

Query  120  AEEVDTDA-GKKMALFAQIDPTPDLIAMTKARQKIYSSLEISPNFADSGQPYLVGLGVTD  178
            AEE++ ++ + KMAL+A+I+PT  L+ + K  QK+++S+E+S +FAD+G++YLVGLG TD
Sbjct  68   AEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGLGATD  127

Query  179  SPASLGTEILTFAANSGTANPFAARKQNPDNLYSEAVEIALEFDTAQADPEPGKLATSIK  238
             PASLGTE+L+F+A S++ NP+A RKQNP+NL+SEAVE  +E++ AQ +  +  L +S+ 
Sbjct  128  DPASLGTEMLAFSA-SAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPS--LFASVT  184

Query  239  NLFKKITAGDTSNDARFSDVSEAIQTVATHVAAGDEK----FAASQVRIETLETALEKVT  294
             LF K    + ++DARFSDV  A++ VAT+     E+    +A +  R+ +LE++L+   
Sbjct  185  ALFTK---KEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQQ  241

Query  295  SDFASFKRQMDTTDANPTQRPQAAGGSG  322
            + FA +++Q+   D+    R +A+GG +
Sbjct  242  TAFAELQQQLSREDSRKDYRQRAPGGDA  269

103) PARA_04010 in NC_015964


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  186 bits (691),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 120/266 (46%), Positives = 194/266 (73%), Gaps = 16/266 (6%)

Query  15   MAKKSKWVVVATEGATTDGRTIQRNWIEEMAESYDPKNTYGARINLDHIKFSVYIPELAN  74
            M+ K+K+  ++ EGATTDGR IQR+W+ +MA SY+P   Y A INL+HIK   Y+PE + 
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNP-TVYTALINLEHIK--SYLPE-ST  56

Query  75   AHCFGDVLAVKAEEREDG----KLQLLAELQPTDALIALNQKGQKVYTSVEIDTNFADTG  130
             + +G V ++ AEE +DG    K+ L A+++PTDAL+ L +KGQK++TS+E+ T+FADTG
Sbjct  57   FNRYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTG  116

Query  131  KAYLVGLAVTDNPASLGTEMLSFS----HNGLNARKLKADNIFSAAIETELDFEGWDGLD  186
            KAYLVGL+ TD+PASLGTEML+FS    HN L  RK +++N+FS A+ET +++E  ++ +
Sbjct  117  KAYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQD-E  175

Query  187  HPSVFTKIKALFAKKEKSDDERFSDQSSAIELLAAQQKEILEKLTALQGDFANQQAEIEE  246
             PS+F+ + ALF+KKE++DD RFSD   A+EL+A++Q+++ E+    +  +A++   +  
Sbjct  176  KPSLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSER---TDKSLAENGERLSA  232

Query  247  MKASNEEIHATFEELKQKPAQAENPR  272
            + +S +E +++F EL+Q+ ++ ++ +
Sbjct  233  LESSLQEQQTAFAELQQQLSREDSRK  258

104) Csal_1398 in NC_007963


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  185 bits (685),  Expect = 3e-48, Method: Compositional matrix adjust.
 Identities = 123/279 (45%), Positives = 185/279 (67%), Gaps = 16/279 (5%)

Query  2    KWFRIATEGATTDGRNISAAWLQQMADNFDPDTYGCRINLEHMRGMLPDGPFKSYGDVTA  61
            K+FRI+ EGATTDGR+I   WL QMA +++P  Y   INLEH+++ LP++ F+ YG VT+
Sbjct  6    KRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVTG  65

Query  62   LKTEKGED----GKLQLLAAIDPTDDLKALNDKRQKVYTSMEVDPNFADTGEAYLVGLAV  117
            L +E  +D    GK+ L A I+PTD L  L  K QK++TSMEV  +FADTG AYLVGL+ 
Sbjct  66   LVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGLGA  125

Query  118  TDSPASLGTQMLQFAAGAGSESPLAGRKQRPDNLFTAAIETEFDFTAEPPTDSGPSLTER  177
            TD PASLGT+ML F+A+A+ ++PLA RKQ P+NLF+ A+ET +++  E + D  PSL   
Sbjct  126  TDDPASLGTEMLAFSASAA-HNPLANRKQNPENLFSEAVETLIEL--EEAQDEKPSLFAS  182

Query  178  VKALFRKHDAKSEAGFAAFREELEQTLGLFVEKHQALAD--DLNARPSATDFNDLKAAHD  235
            V ALF K +   +A F+    ++++++ L    +Q L++  D +   ++  ++ L ++ +
Sbjct  183  VTALFTKKEQTDDARFS----DVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQ  238

Query  236  TLQTRFDELFQRLD-NTPRHTPRQRATGDD--GAIVTDC  271
              QT F EL Q+L  + +R   RQRA G+D  ++ +T+C
Sbjct  239  EQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

105) A464_2755 in NC_021870


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  184 bits (683),  Expect = 4e-48, Method: Compositional matrix adjust.
 Identities = 121/284 (43%), Positives = 182/284 (65%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRIISASDIQEMAETYDPRVYGCRINLEHIRGLLPDGMFKR  60
            M+ K  +F RIGVEG T DGR I    + +MA +Y+P VY   INLEHI++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVVELKAEKIDDDSALNGKWALFARITPTNDLIAMNKAAQKVYTSMEIQPNFGNSGKC  120
            YG V  L AE I+D ++L GK AL+A I PT+ L+ + K +QK++TSME+  +F+++GK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRKAKHNPLQRFKASPENVFSVATLAELEFEDVPDTVLN  180
            YLVGL+ TDDPASLGTE L F   A HNPL   K +PEN+FS A  + +E+E+  D    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  SLADKVKAIFSRKQVSDDARLHDVHEAVTTVSEHVQTSLTAQEKRISDMETALATFKQEL  240
            SL   V A+F++K+ +DDAR+ DVH AV  V+ + Q      +K +++    L++    L
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSA----L  233

Query  241  TGKVEETSQAFSALKTTLDKTESFSQPRRTKASGGGGDELLTDC  284
             + ++E   AF+ L+  L + +S  + R+  ++G++    LT+C
Sbjct  234  ESSLQEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

106) BP1026B_I3594 in NC_017831


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  184 bits (682),  Expect = 5e-48, Method: Compositional matrix adjust.
 Identities = 124/283 (44%), Positives = 182/283 (65%), Gaps = 20/283 (7%)

Query  1    MASKSKFFRVAVEGATVDGRELKREWFTQMAKHYDPKLYGARVNIEHLKGWAPLSSTNPF  60
            M+ K+K FR++VEGAT DGRE++REW+ QMA  Y+P +Y A +N+EH+K+  P    + F
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLP---ESTF  57

Query  61   GSYGDVIALKTAEIEDGPLKGKMGLYAQIDPTNELVALSKKRQKIYTSIEINPDFADIGE  120
              YG V +L + EI+DGPL GKM+LYA+I+PT+ LV L KK QK++TS+E++  FAD G 
Sbjct  58   NRYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGK  117

Query  121  AYLVGLAATDDPASLGTEALQFAA-----------KRTNNLYSAAYETAIEFEGA-TETA  168
            AYLVGL+ATDDPASLGTE L F+A           +  +NL+S A ET IE+E A  E +
Sbjct  118  AYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKP  177

Query  169  GLKEWVKGLFARTRENDDERFADVREAVEQVATHAHNTGREVatlssavtsatstaadaK  228
            +L   V +LF++  + DD RF+DV+ AVE VAT+ +N +       +      S+   + 
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  229  KRADEAFAAVEALTEKLSNTDNGA--PQRPPSTGSTGELVTDC  269
            +  + AFA    L ++LS  D+     QR+P+ ++ +  +T+C
Sbjct  238  QEQQTAFA---ELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

107) gpO in NC_008800


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  184 bits (681),  Expect = 6e-48, Method: Compositional matrix adjust.
 Identities = 119/281 (43%), Positives = 193/281 (69%), Gaps = 9/281 (3%)

Query  5    SKFFRVAVEGATTDGRIINRQDLLDIALSYDPKVYGARVDLEHYKSPYPDSVFHCYGDIT  64
            +K FR++VEGATTDGR I+R+ L+++A SY+P VY A ++LEH KS  P+S F+ YG +T
Sbjct  5    AKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVT  64

Query  65   AVKTEEIAEGALKGKLALFAQIDPTDELLTLNKGRQKVYSSIQFDPNFATSGRAYLKGLA  124
            ++ +EEI +G+L GK+AL+A+I+PTD L+ L K  QK+++S++   +FA +G+AYL GL+
Sbjct  65   GLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGLG  124

Query  125  LTDDPASLGTELLQFCAKQVAESKPNPLAGRKQSPDCLFTALEETFIEFEEVQPADDTSK  184
             TDDPASLGTE+L F A     +  NPLA RKQ+P+ LF+   ET+IE+EE Q  D+ + 
Sbjct  125  ATDDPASLGTEMLAFSAS----AAHNPLANRKQNPENLFSEAVETLIELEEAQ--DEKPS  178

Query  185  KFTAKIKELLFGAEKKTDGNLDDIRQAVQVIAESQKTVLE-TQQQFTASRQEVTDLKDQL  243
             F++ +  L+   E+  D+ + D+++AV+++A  Q+ + E T++ ++ + + ++ L   L
Sbjct  179  LFAS-VTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  244  SQLSTSFASLTTQLQSEDSQHTSRPPAKGGPEGSTDDTIDC  284
             +  T+FA L  QL  EDS+   R  A GG +++++   +C
Sbjct  238  QEQQTAFAELQQQLSREDSRKDYRQRAPGG-DAPAGTLTNC  277

108) ST548_p3239 in NC_020181


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  183 bits (678),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 185/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRILSGNDIQEMAETYDPRVYGCRINLEHIRGLLPDGVFKR  60
            M+ K  +F RIGVEG T DGR +  + + +MA +Y+P VY   INLEHI++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVVELKAEKIDDDSALNGKWALFAKITPTDDLVALNKAAQKVYTSMEIQPNFANTGKC  120
            YG V  L AE I+D ++L GK AL+A I PTD LV L K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKYNPLQRFKANPENVFSVATLAELEFEDVPGTVLN  180
            YLVGL+ TDDPASLGTE L F  +A  NPL   K NPEN+FS A  + +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  SLVDKVSAIFSRKQVSDDARLNDVHEAVTTVSEHVQTNLTAQDKRISDMETAFATFKQEL  240
            SL   V+A+F++K+ +DDAR++DVH AV  V+ + Q      DK +++    +++    L
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSA----L  233

Query  241  TGKVEETSHAFSVLKTTLDKTESFSQPRRAKASGGGGDELLTDC  284
             + ++E   AF+ L+  L + +S  + R+  ++G++    LT+C
Sbjct  234  ESSLQEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

109) gpO in NC_017451


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  183 bits (679),  Expect = 8e-48, Method: Compositional matrix adjust.
 Identities = 124/263 (48%), Positives = 184/263 (70%), Gaps = 10/263 (3%)

Query  1    MAKTSKWFVVATEGATTDGRTINRTWIEQMAANYDPKKYGARVNLEHIKWRYMWNDDPHS  60
            M+  +K+F ++ EGATTDGR I+R W+ QMAA+Y+P  Y A +NLEHIK  Y+   ++  
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKS-YL--PESTF  57

Query  61   KCYGDVVGLKTEENAEG----KLQLLAQIDPTDDLIKLNKDRQKIYTSIECDPNFADTGE  116
            + YG V GL +EE  +G    K+ L A+I+PTD L+ L K  QK++TS+E   +FADTG 
Sbjct  58   NRYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGK  117

Query  117  AYLVGLAVTDNPASLGTEMLVFSAGASANPLNNRKEKAENLFTAAIetelefeevkeKGL  176
            AYLVGL+ TD+PASLGTEML FSA+A+ NPL NRK+++ENLF+ A+ET +E+EE ++   
Sbjct  118  AYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKP  177

Query  177  SVFAKIRALFADKEKTDNERFADQTQAIELLAEQTKETLEKLTALSDDLAKQKAEIEEMK  236
            S+FA + ALF+ KE+TD+ RF+D  +A+EL+A + ++  E+       LA +   +  + 
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSER---TDKSLAENGERLSALE  234

Query  237  ASNAEIQATFAELQKPVEPENPR  259
            +S  E Q++FAELQ+ +  E++R
Sbjct  235  SSLQEQQTAFAELQQQLSREDSR  257

110) RSc1938 in NC_003295


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  183 bits (679),  Expect = 9e-48, Method: Compositional matrix adjust.
 Identities = 124/264 (47%), Positives = 185/264 (71%), Gaps = 14/264 (5%)

Query  1    MAKGTKFYRVATEGATSDGRVIDRETLVEIATNYDPKVYTARVNLEHIRGYDPTGPFKAY  60
            M+  +K +R++ EGAT+DGR I+RE LV++A++Y+P VYTA +NLEHI++Y P + F+ Y
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GDVTALKTEEE-----GGKLGLYAQIDPTDDLVAMTKARQKIFASMELNPSFADTGEAYL  115
            G VT+L +EE      +GK++LYA+I+PTD LV + K  QK+F+SME++  FADTG AYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  116  VGLAVTDNPASLGCEVLQFSAKAKTNPLAARKQNPDNLFTEAVEVSFDFSPEVTNYTATT  175
            VGL+ TD+PASLG E+L FSA A  NPLA RKQNP+NLF+EAVE  +++       +   
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEE-----AQDE  175

Query  176  VPTNFADSIKRLFSKQRRSDTNADARFADMqeavqtvaqqvqatgeqFSTALKAVTDQLS  235
             P+ FA S+  LF+K+ ++D   DARF+D++ AV+ VA + Q  +E+   +L    ++LS
Sbjct  176  KPSLFA-SVTALFTKKEQTD---DARFSDVHKAVELVATEQQNLSERTDKSLAENGERLS  231

Query  236  AMNSQGAERDKQFNAMKAQLEKTD  259
            A++S   E++  F  ++ QL + D
Sbjct  232  ALESSLQEQQTAFAELQQQLSRED  255

111) Bmul_4836 in NC_010086


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  181 bits (670),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 126/280 (45%), Positives = 189/280 (68%), Gaps = 19/280 (6%)

Query  7    KTKFFRIATEGATTDGRTIDRAMLEQMARTYDPAVYGARINMEHIRGLYPDGAFRAYGDV  66
            K+K FRI+ EGATTDGR I+R  L QMA +Y+P+VY A IN+EHI++  P+++F  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  67   IALKAEEQD-----GKMRLFAQLSPTKDLIAMTTEQRQKVYTSMEVDPDFAGTGEAYLVG  121
             +L AEE +     GKM L+A++ PT  L+ +     QK++TSMEV   FA+TG AYLVG
Sbjct  64   TGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKG-QKLFTSMEVSTKFADTGKAYLVG  122

Query  122  LAVTDNPASLGTEMLAFSAK--NRAFDTRKLRPDNLFSAAIEADIELEDDAPTRSGDAAR  179
            L+ TD+PASLGTEMLAFSA   + ++  RK  P+NLFS A+E+ IELE+    ++     
Sbjct  123  LGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKP-----  177

Query  180  SLFSKVRSLLNRKEVSDDQRFSDLsqsvvavaesqsqvLDQVEQFSSE----LADVKRAL  235
            SLF+ V +L+ +KE +DD RFSD+ ++V  VA  Q ++ ++ ++  +E    L+ +  +L
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  236  KDAEARHSDLVQKLSRTDSDRQQRPMSTGGDNAA--LTDC  273
            ++ ++  ++L Q+LSR DS ++ R  + GGD +A  LT+C
Sbjct  238  QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

112) BMULJ_03680 in NC_010805


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  181 bits (670),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 126/280 (45%), Positives = 189/280 (68%), Gaps = 19/280 (6%)

Query  7    KTKFFRIATEGATTDGRTIDRAMLEQMARTYDPAVYGARINMEHIRGLYPDGAFRAYGDV  66
            K+K FRI+ EGATTDGR I+R  L QMA +Y+P+VY A IN+EHI++  P+++F  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  67   IALKAEEQD-----GKMRLFAQLSPTKDLIAMTTEQRQKVYTSMEVDPDFAGTGEAYLVG  121
             +L AEE +     GKM L+A++ PT  L+ +     QK++TSMEV   FA+TG AYLVG
Sbjct  64   TGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKG-QKLFTSMEVSTKFADTGKAYLVG  122

Query  122  LAVTDNPASLGTEMLAFSAK--NRAFDTRKLRPDNLFSAAIEADIELEDDAPTRSGDAAR  179
            L+ TD+PASLGTEMLAFSA   + ++  RK  P+NLFS A+E+ IELE+    ++     
Sbjct  123  LGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKP-----  177

Query  180  SLFSKVRSLLNRKEVSDDQRFSDLsqsvvavaesqsqvLDQVEQFSSE----LADVKRAL  235
            SLF+ V +L+ +KE +DD RFSD+ ++V  VA  Q ++ ++ ++  +E    L+ +  +L
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  236  KDAEARHSDLVQKLSRTDSDRQQRPMSTGGDNAA--LTDC  273
            ++ ++  ++L Q+LSR DS ++ R  + GGD +A  LT+C
Sbjct  238  QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

113) SNSL254_A4365 in NC_011080


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  180 bits (666),  Expect = 9e-47, Method: Compositional matrix adjust.
 Identities = 122/285 (43%), Positives = 186/285 (66%), Gaps = 15/285 (5%)

Query  6    SKWFRIGVEGDTCDGRVISATDIQEMADGFDPRVYGCRINLEHIRSVIPDSPFCRYGDVT  65
            +K+FRIGVEG T DGR I    + +MA +++P VY   INLEHI+S +P+S F RYG VT
Sbjct  5    AKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVT  64

Query  66   EVKAEVIDEDSALNGKLALFGKIAPLDNLLAMLAKGQKVYTSMEIRPNFANTGKCHLIGL  125
             + AE I +D++L GK+AL++ I P D L+ ++ KGQK++TSME+  +FA+TGK  L+GL
Sbjct  65   GLVAEEI-QDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  126  AVTDDPASLGTEYLQFCSRAQQNPLAGKKDQPGDLFS--VATLAELEFEDLPDNLLSKIS  183
            + TDDPASLGTE L F + A +NPLA +K++P +LFS  V TL ELE E   ++  + + 
Sbjct  124  GATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELE-EAQDEK--PSLF  180

Query  184  DTVKGIFSRKQTDDDARFGDVHEAVTAIAERVQIGGESAEVRFRAIETELADVKKALAEQ  243
             +V ++F++K+  DDARF+DVH AV  +A   Q  +E ++  +      L+ +  +L EQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  244  ADAtsqqfstltttlentesRSQARRKLST-GGDGDSAVSTLTDC  287
              A         + L++  SR ++R+     + +GD++ +TLT+C
Sbjct  241  QTA--------FAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

114) SN31241_46510 in NC_021902


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  180 bits (666),  Expect = 9e-47, Method: Compositional matrix adjust.
 Identities = 122/285 (43%), Positives = 186/285 (66%), Gaps = 15/285 (5%)

Query  6    SKWFRIGVEGDTCDGRVISATDIQEMADGFDPRVYGCRINLEHIRSVIPDSPFCRYGDVT  65
            +K+FRIGVEG T DGR I    + +MA +++P VY   INLEHI+S +P+S F RYG VT
Sbjct  5    AKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVT  64

Query  66   EVKAEVIDEDSALNGKLALFGKIAPLDNLLAMLAKGQKVYTSMEIRPNFANTGKCHLIGL  125
             + AE I +D++L GK+AL++ I P D L+ ++ KGQK++TSME+  +FA+TGK  L+GL
Sbjct  65   GLVAEEI-QDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  126  AVTDDPASLGTEYLQFCSRAQQNPLAGKKDQPGDLFS--VATLAELEFEDLPDNLLSKIS  183
            + TDDPASLGTE L F + A +NPLA +K++P +LFS  V TL ELE E   ++  + + 
Sbjct  124  GATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELE-EAQDEK--PSLF  180

Query  184  DTVKGIFSRKQTDDDARFGDVHEAVTAIAERVQIGGESAEVRFRAIETELADVKKALAEQ  243
             +V ++F++K+  DDARF+DVH AV  +A   Q  +E ++  +      L+ +  +L EQ
Sbjct  181  ASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  244  ADAtsqqfstltttlentesRSQARRKLST-GGDGDSAVSTLTDC  287
              A         + L++  SR ++R+     + +GD++ +TLT+C
Sbjct  241  QTA--------FAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

115) ETAC_16510 in NC_020796


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  179 bits (664),  Expect = 1e-46, Method: Compositional matrix adjust.
 Identities = 123/291 (43%), Positives = 188/291 (65%), Gaps = 21/291 (7%)

Query  1    MAKKVSKFFRIGVEGDTCDGRTISGTDIQEMAESFDPRVYGCRINLEHIRGLFPDGDFKR  60
            M+ K  +F RIGVEG T DGR I    + +MA S++P VY   INLEHI++ +P++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   LGDVVELKAEKIDDDSALNGKWALFAKVTPTDDLIAMNKKLQKVYTSMEIQPNFANTGKC  120
             G V  L AE I+D ++L GK AL+A + PTD L+ + KK QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCSHAKRNPLQRFKASPENVFSAATLAALEFEDVPDTVLN  180
            YLVGL+ TDDPASLGTE L F + A +NPL   K +PEN+FS A  + +E+E+  D    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  SLVDKVKTIFSRKQVSDDARLNDVHEAVTTV-------SEHVQTNLTKQDDRISAMETAF  233
            SL   V ++F++K+ +DDAR++DVH AV  V       SE+ + +L+ +++R+SA+E++ 
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESS-  236

Query  234  ATFKQELTGQVDETSRAFSALKTTLDKTESFSQPRRTKASGGGGDELLTDC  284
                      ++E   AF+ L+  L + +S  + R+  ++G++    LT+C
Sbjct  237  ----------LQEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

116) HifGL_001376 in NC_022356


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  179 bits (663),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 121/264 (46%), Positives = 182/264 (69%), Gaps = 18/264 (6%)

Query  1    MAKKSKWVIVATEGATTDGRTIQRNWIEEMAESYDPKNTYGARINLDHIKFSLYMPELAN  60
            M+ K+K+  ++ EGATTDGR IQR+W+ +MA SY+P   Y A INL+HIK   Y+PE + 
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNP-TVYTALINLEHIK--SYLPE-ST  56

Query  61   SHCFGDVLAVKAEEREDG----KLQLLAQLQPTDALIALNKEGQKVYTSVEIDPNFADTG  116
             + +G V ++ AEE +DG    K+ L A+++PTDAL+ L K GQK++TS+E+  +FADTG
Sbjct  57   FNRYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTG  116

Query  117  KAYLVGLAVTDNPASLGTEMLSFS----HNGLNARKLKTDNLFTAAIETELEFVE---ET  169
            KAYLVGL+ TD+PASLGTEML+FS    HN L  RK + +NLF+ A+ET +E+ E   E 
Sbjct  117  KAYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK  176

Query  170  QSIFEKIKGLFAKKEKSDDERFSDQTQAIELLAEQTKETLEKLTALSDDLAKQQAEIEEM  229
             S+F  + +LF+KKE++DD RFSD  +A+EL+A + ++  E+       LA +   +  +
Sbjct  177  PSLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSER---TDKSLAENGERLSAL  233

Query  230  KAGNAEIQATFAELKKPVEPENPR  253
             ++  E Q++FAEL++ +  E++R
Sbjct  234  ESSLQEQQTAFAELQQQLSREDSR  257

117) bglu_1g01470 in NC_012724


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  178 bits (658),  Expect = 4e-46, Method: Compositional matrix adjust.
 Identities = 113/211 (54%), Positives = 152/211 (73%), Gaps = 15/211 (7%)

Query  3    TNKTKFFRVAVEGATVDGREIKREWLTQMAKNYNRELYGARLNIEHLKGWAPLSATNPFG  62
            T K+K FR++VEGAT DGREI+REWL QMA +YN  +Y A +N+EH+K+  P    + F 
Sbjct  2    TVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLP---ESTFN  58

Query  63   AYGDVIALKASEIEDGPLKGKMGLYAQLDPTDELVALSKKRQKVFTSIEVNPDFADIGEA  122
             YG V +L A EI+DGPL GKM+LYA+++PTD LV L KK QK+FTS+EV+  FAD G A
Sbjct  59   RYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  123  YLVGLAATDDPASLGTEALQFAA-----------RRSNNLFSAACETLIEF-DGEPESTS  170
            YLVGL+ATDDPASLGTE L F+A           + ++NLFS A ETLIE+ +++ E  S
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPS  178

Query  171  LLSIVKSMFARNRSTDDQRDADVRHAVEEIA  201
            L++ V ++F+++  TDD R +DV+ AVE +A
Sbjct  179  LFASVTALFTKKEQTDDARFSDVHKAVELVA  209

118) O in NC_003902


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  177 bits (656),  Expect = 6e-46, Method: Compositional matrix adjust.
 Identities = 113/279 (41%), Positives = 188/279 (68%), Gaps = 12/279 (4%)

Query  9    RSNWFRVAVEGATTDGRTIQRSWIDDMAATYNRETYGARIWIEHMRSLLPDSPFRAYGDV  68
            ++++FR++VEGATTDGR IQR W+ +MAA+YN   Y A I +EH++S LP+S F  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  69   TAVKAEEVEIDG--TKRLALFAQIEPTADLITINKSKQKLYTSIEVQEKFANTGKAYLVG  126
            T++ AEE++ DG  + ++AL+A+IEPT  L+ + K  QKL+TS+EV  KFA+TGKAYLVG
Sbjct  64   TGLVAEEIQ-DGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  127  LAVTDSPASLGTSMLSFASQNPDANPLADRKQSPGNLFTVAEETALEFSEVSEGPVANLL  186
            L+ TD PASLGT ML+F++  ++ NPLA+RKQ+P NLF+ A ET +E+ E  +   ++L+
Sbjct  123  LGATDDPASLGTEMLAFSASAAH-NPLANRKQNPENLFSEAVETLIELEEAQDEK-PSLF  180

Query  187  SRIRTALKSEDATSITAEQFAELGEGVEEIAEHVRGQDERFNRLQAEHAEQ----KTKHE  242
            + + + +   + T     +F+++  +VE +A + +   ER ++  AE++E+     +  +
Sbjct  181  ASVTALFTKKEQTD--DARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQ  238

Query  243  QLANDLAQLRESLSQQPDPAQ-PARPVVTGGGVAVLTDC  280
            +    +A+L++ LS++    +   R+   ++  + LT+C
Sbjct  239  EQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

119) D648_14580 in NC_020834


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  177 bits (654),  Expect = 8e-46, Method: Compositional matrix adjust.
 Identities = 123/280 (44%), Positives = 192/280 (69%), Gaps = 15/280 (5%)

Query  1    MTTKSKWFVVATEGATTDGREISREWLTQIEENYDPKNNYGARINLEHFRWRWFEKDDPH  60
            MT K+K+F ++ EGATTDGREI REWL Q+  +Y+P   Y A INLEH++   +  +   
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNP-TVYTALINLEHIKS--YLPESTF  57

Query  61   SYSYGDVLAVKTEEREDG----KLQLLAEIAPTEALVKLVKDKQKVYTSVEIDLNFADTG  116
            +  YG V ++ +EE +DG    K+ L A+I PT+ALV LVK  QK++TS+E+  +FADTG
Sbjct  58   N-RYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTG  116

Query  117  EAYLVGLAVTDTPASLGTEYLTFCAGATHNPLADRKQKPENLVSEAVEANLEF-TAEPEK  175
             AYLVGL+ TD PASLGTE L+F A+A+HNPLA+RKQ+PENL SEAVE+ +E+  A+ EK
Sbjct  117  KAYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK  176

Query  176  GAWLEKFKAMFTKAKTDNDGKFAEHEKAMELLAEQFSKVSTENDRLQTE----LSTLQTE  231
             + +    A+FTK    +D++F++ +KA+EL+A +  ++S   D+  +E    LS+L++ 
Sbjct  177  PSLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESS  236

Query  232  FTELQKQAGEFAEKFAKLEQEPSANYTPRPKATGAKAGDV  271
            + E Q   +E+ +++++  +++  +Y  R+ + +A AG +
Sbjct  237  LQEQQTAFAELQQQLSR--EDSRKDYRQRAPGGDAPAGTL  274

120) XCAW_04502 in NC_020815


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  176 bits (652),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 115/279 (42%), Positives = 189/279 (68%), Gaps = 12/279 (4%)

Query  9    RSNWFRVAVEGATTDGRTIQRSWIEDMAATYNRETYNARIWIEHMRSLLPDSPFRAYGDV  68
            ++++FR++VEGATTDGR IQR W+ +MAA+YN   Y A I +EH++S LP+S F  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  69   TAVKAEEVEIDG--SKRLALFAQIEPTADLITINKSKQKLYTSIEVQEKFANTGKAYLVG  126
            T++ AEE++ DG  + ++AL+A+IEPT  L+ + K  QKL+TS+EV  KFA+TGKAYLVG
Sbjct  64   TGLVAEEIQ-DGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  127  LAVTDSPASLGTSMLSFASQNPDANPLADRKQSPGNLFTVAEETALEFSEVSEGPVANLL  186
            L+ TD PASLGT ML+F++  ++ NPLA+RKQ+P NLF+ A ET +E+ E  +   ++L+
Sbjct  123  LGATDDPASLGTEMLAFSASAAH-NPLANRKQNPENLFSEAVETLIELEEAQDEK-PSLF  180

Query  187  SRIRTALKSEDATSITAEQFADLGQGVEEIAEYVRGQDERFNRLQAEHAEQ----KTKHE  242
            + + + +   + T     +F+D+ ++VE +A   +   ER ++  AE++E+     +  +
Sbjct  181  ASVTALFTKKEQTD--DARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQ  238

Query  243  QLANDLAQLRESLSQQPDPAQ-PARPVVTGSGAAVLTDC  280
            +    +A+L++ LS++    +   R+   ++ A+ LT+C
Sbjct  239  EQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

121) F382_02230 in NC_021743


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  175 bits (649),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 123/280 (44%), Positives = 191/280 (69%), Gaps = 15/280 (5%)

Query  1    MTTKSKWFVVATEGATTDGREISREWLTQIEENYDPKNNYGARINLEHFRWRWFEKDDPH  60
            MT K+K+F ++ EGATTDGREI REWL Q+  +Y+P   Y A INLEH++   +  +   
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNP-TVYTALINLEHIKS--YLPESTF  57

Query  61   SYSYGDVLAVKTEEREDG----KLQLLAEIAPTEALVKLVKDKQKVYTSVEIDLNFADTG  116
            +  YG V ++ +EE +DG    K+ L A+I PT+ALV LVK  QK++TS+E+  +FADTG
Sbjct  58   N-RYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTG  116

Query  117  EAYLVGLAVTDTPASLGTEYLTFCAGATHNPLADRKQKPENLVSEAVEANLEF-TAEPEK  175
             AYLVGL+ TD PASLGTE L+F A+A+HNPLA+RKQ+PENL SEAVE+ +E+  A+ EK
Sbjct  117  KAYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK  176

Query  176  GAWLEKFKAMFTKAKTDNDGKFAEHEKAMELLAEQFSKVSTENDRLQTE----LSTLQIE  231
             + +    A+FTK    +D++F++ +KA+EL+A +  ++S   D+  +E    LS+L+  
Sbjct  177  PSLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESS  236

Query  232  FTELQKQAGEFAEKFAKLEQEPSANYTPRPKATGAKAGDV  271
            + E Q   +E+ +++++  +++  +Y  R+ + +A AG +
Sbjct  237  LQEQQTAFAELQQQLSR--EDSRKDYRQRAPGGDAPAGTL  274

122) J451_01155 in NC_021739


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  175 bits (649),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 123/280 (44%), Positives = 191/280 (69%), Gaps = 15/280 (5%)

Query  1    MTTKSKWFVVATEGATTDGREISREWLTQIEENYDPKNNYGARINLEHFRWRWFEKDDPH  60
            MT K+K+F ++ EGATTDGREI REWL Q+  +Y+P   Y A INLEH++   +  +   
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNP-TVYTALINLEHIKS--YLPESTF  57

Query  61   SYSYGDVLAVKTEEREDG----KLQLLAEIAPTEALVKLVKDKQKVYTSVEIDLNFADTG  116
            +  YG V ++ +EE +DG    K+ L A+I PT+ALV LVK  QK++TS+E+  +FADTG
Sbjct  58   N-RYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTG  116

Query  117  EAYLVGLAVTDTPASLGTEYLTFCAGATHNPLADRKQKPENLVSEAVEANLEF-TAEPEK  175
             AYLVGL+ TD PASLGTE L+F A+A+HNPLA+RKQ+PENL SEAVE+ +E+  A+ EK
Sbjct  117  KAYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK  176

Query  176  GAWLEKFKAMFTKAKTDNDGKFAEHEKAMELLAEQFSKVSTENDRLQTE----LSTLQIE  231
             + +    A+FTK    +D++F++ +KA+EL+A +  ++S   D+  +E    LS+L+  
Sbjct  177  PSLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESS  236

Query  232  FTELQKQAGEFAEKFAKLEQEPSANYTPRPKATGAKAGDV  271
            + E Q   +E+ +++++  +++  +Y  R+ + +A AG +
Sbjct  237  LQEQQTAFAELQQQLSR--EDSRKDYRQRAPGGDAPAGTL  274

123) MHH_c18540 in NC_021082


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  175 bits (649),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 123/280 (44%), Positives = 191/280 (69%), Gaps = 15/280 (5%)

Query  1    MTTKSKWFVVATEGATTDGREISREWLTQIEENYDPKNNYGARINLEHFRWRWFEKDDPH  60
            MT K+K+F ++ EGATTDGREI REWL Q+  +Y+P   Y A INLEH++   +  +   
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNP-TVYTALINLEHIKS--YLPESTF  57

Query  61   SYSYGDVLAVKTEEREDG----KLQLLAEIAPTEALVKLVKDKQKVYTSVEIDLNFADTG  116
            +  YG V ++ +EE +DG    K+ L A+I PT+ALV LVK  QK++TS+E+  +FADTG
Sbjct  58   N-RYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTG  116

Query  117  EAYLVGLAVTDTPASLGTEYLTFCAGATHNPLADRKQKPENLVSEAVEANLEF-TAEPEK  175
             AYLVGL+ TD PASLGTE L+F A+A+HNPLA+RKQ+PENL SEAVE+ +E+  A+ EK
Sbjct  117  KAYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK  176

Query  176  GAWLEKFKAMFTKAKTDNDGKFAEHEKAMELLAEQFSKVSTENDRLQTE----LSTLQIE  231
             + +    A+FTK    +D++F++ +KA+EL+A +  ++S   D+  +E    LS+L+  
Sbjct  177  PSLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESS  236

Query  232  FTELQKQAGEFAEKFAKLEQEPSANYTPRPKATGAKAGDV  271
            + E Q   +E+ +++++  +++  +Y  R+ + +A AG +
Sbjct  237  LQEQQTAFAELQQQLSR--EDSRKDYRQRAPGGDAPAGTL  274

124) D650_13100 in NC_020833


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  175 bits (649),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 123/280 (44%), Positives = 191/280 (69%), Gaps = 15/280 (5%)

Query  1    MTTKSKWFVVATEGATTDGREISREWLTQIEENYDPKNNYGARINLEHFRWRWFEKDDPH  60
            MT K+K+F ++ EGATTDGREI REWL Q+  +Y+P   Y A INLEH++   +  +   
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNP-TVYTALINLEHIKS--YLPESTF  57

Query  61   SYSYGDVLAVKTEEREDG----KLQLLAEIAPTEALVKLVKDKQKVYTSVEIDLNFADTG  116
            +  YG V ++ +EE +DG    K+ L A+I PT+ALV LVK  QK++TS+E+  +FADTG
Sbjct  58   N-RYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTG  116

Query  117  EAYLVGLAVTDTPASLGTEYLTFCAGATHNPLADRKQKPENLVSEAVEANLEF-TAEPEK  175
             AYLVGL+ TD PASLGTE L+F A+A+HNPLA+RKQ+PENL SEAVE+ +E+  A+ EK
Sbjct  117  KAYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK  176

Query  176  GAWLEKFKAMFTKAKTDNDGKFAEHEKAMELLAEQFSKVSTENDRLQTE----LSTLQIE  231
             + +    A+FTK    +D++F++ +KA+EL+A +  ++S   D+  +E    LS+L+  
Sbjct  177  PSLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESS  236

Query  232  FTELQKQAGEFAEKFAKLEQEPSANYTPRPKATGAKAGDV  271
            + E Q   +E+ +++++  +++  +Y  R+ + +A AG +
Sbjct  237  LQEQQTAFAELQQQLSR--EDSRKDYRQRAPGGDAPAGTL  274

125) N220_05875 in NC_021883


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  175 bits (649),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 123/280 (44%), Positives = 191/280 (69%), Gaps = 15/280 (5%)

Query  1    MTTKSKWFVVATEGATTDGREISREWLTQIEENYDPKNNYGARINLEHFRWRWFEKDDPH  60
            MT K+K+F ++ EGATTDGREI REWL Q+  +Y+P   Y A INLEH++   +  +   
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNP-TVYTALINLEHIKS--YLPESTF  57

Query  61   SYSYGDVLAVKTEEREDG----KLQLLAEIAPTEALVKLVKDKQKVYTSVEIDLNFADTG  116
            +  YG V ++ +EE +DG    K+ L A+I PT+ALV LVK  QK++TS+E+  +FADTG
Sbjct  58   N-RYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTG  116

Query  117  EAYLVGLAVTDTPASLGTEYLTFCAGATHNPLADRKQKPENLVSEAVEANLEF-TAEPEK  175
             AYLVGL+ TD PASLGTE L+F A+A+HNPLA+RKQ+PENL SEAVE+ +E+  A+ EK
Sbjct  117  KAYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK  176

Query  176  GAWLEKFKAMFTKAKTDNDGKFAEHEKAMELLAEQFSKVSTENDRLQTE----LSTLQIE  231
             + +    A+FTK    +D++F++ +KA+EL+A +  ++S   D+  +E    LS+L+  
Sbjct  177  PSLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESS  236

Query  232  FTELQKQAGEFAEKFAKLEQEPSANYTPRPKATGAKAGDV  271
            + E Q   +E+ +++++  +++  +Y  R+ + +A AG +
Sbjct  237  LQEQQTAFAELQQQLSR--EDSRKDYRQRAPGGDAPAGTL  274

126) XCAW_01161 in NC_020815


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  175 bits (649),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 114/279 (41%), Positives = 188/279 (68%), Gaps = 12/279 (4%)

Query  9    RSNWFRVAVEGATTDGRTIQRSWIEDMAATYNRETYNARIWIEHMRSLLPDSPFRAYGDV  68
            ++++FR++VEGATTDGR IQR W+ +MAA+YN   Y A I +EH++S LP+S F  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  69   TAVKAEEVEIDG--SKRLALFAQIEPTADLITINKSKQKLYTSIEVQEKFANTGKAYLVG  126
            T++ AEE++ DG  + ++AL+A+IEPT  L+ + K  QKL+TS+EV  KFA+TGKAYLVG
Sbjct  64   TGLVAEEIQ-DGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  127  LAVTDSPASLGTSMLSFASQNPDANPLADRKQSPGNLFTVAEETALEFSEVSEGPVANLL  186
            L+ TD PASLGT ML+F++  ++ NPLA+RKQ+P NLF+ A ET +E+ E  +   ++L+
Sbjct  123  LGATDDPASLGTEMLAFSASAAH-NPLANRKQNPENLFSEAVETLIELEEAQDEK-PSLF  180

Query  187  SRIRTALKSEDATSITAEQFADLGQGVEEIAEYVRGQDERFNRLQAEHAEQ----KTKHE  242
            + + + +   + T     +F+D+ ++VE +A   +   ER ++  AE++E+     +  +
Sbjct  181  ASVTALFTKKEQTD--DARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQ  238

Query  243  QLANDLAQLRESLSQQPDPAQ-PARPVVTGSGVAVLTDC  280
            +    +A+L++ LS++    +   R+   ++  + LT+C
Sbjct  239  EQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

127) HICON_07000 in NC_014922


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  175 bits (646),  Expect = 3e-45, Method: Compositional matrix adjust.
 Identities = 122/264 (47%), Positives = 185/264 (71%), Gaps = 15/264 (5%)

Query  1    MAKKSKWVVVATEGATTDGRTIQRNWISEMAESYDPKNTYGARINLDHIKFSLYMPEMAN  60
            M+ K+K+  ++ EGATTDGR IQR+W+ +MA SY+P   Y A INL+HIK   Y+PE + 
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNP-TVYTALINLEHIK--SYLPESTF  57

Query  61   SHCFGDVLAVKTEEREDG----KLQLLAQLQPTDALIALNKEGQKVYTSVEIDTNFADTG  116
            ++ +G V ++ +EE +DG    K+ L A+++PTDAL+ L K GQK++TS+E+ T+FADTG
Sbjct  58   NR-YGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTG  116

Query  117  KAYLVGLAVTDNPASLGTEMLNFS----HNGLNARKLKADNIFtaavetelefveeaeKS  172
            KAYLVGL+ TD+PASLGTEML FS    HN L  RK +++N+F+ AVET +E+ E  +  
Sbjct  117  KAYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK  176

Query  173  PSVLEKIKALFAKKEKSDDERFSDQSSAIELLAEQTKETLEKLAALSDDLAKQKDEIEEM  232
            PS++  + ALF+KKE++DD RFSD   A+EL+A + ++  E+       LA + + +  +
Sbjct  177  PSLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSER---TDKSLAENGERLSAL  233

Query  233  KAGNAEIQATFAELQKPVEPENPR  256
             ++  E Q++FAELQ+ +  E++R
Sbjct  234  ESSLQEQQTAFAELQQQLSREDSR  257

128) gpO in NC_010717


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  174 bits (644),  Expect = 5e-45, Method: Compositional matrix adjust.
 Identities = 113/279 (41%), Positives = 188/279 (68%), Gaps = 12/279 (4%)

Query  9    RSNWFRVAVEGATTDGRTIQRSWIDDMAATYDRETYGARIWIEHMRSLLPDSPFRAYGDV  68
            ++++FR++VEGATTDGR IQR W+ +MAA+Y+   Y A I +EH++S LP+S F  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  69   TAVKAEEVEIDG--SKRLALFAQIEPTADLITINKSKQKLYTSIEVQEKFANTGKAYLVG  126
            T++ AEE++ DG  + ++AL+A+IEPT  L+ + K  QKL+TS+EV  KFA+TGKAYLVG
Sbjct  64   TGLVAEEIQ-DGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  127  LAVTDSPASLGTSMLTFASQHPDANPLADRKQSPGNLFTVAEETTLEFSEVSEGSVANLL  186
            L+ TD PASLGT ML+F++  ++ NPLA+RKQ+P NLF+ A ET +E+ E  +   ++L+
Sbjct  123  LGATDDPASLGTEMLAFSASAAH-NPLANRKQNPENLFSEAVETLIELEEAQDEK-PSLF  180

Query  187  SRIRTALRSEDATNITAQQFADLGQGVEEIAEHVRGQDERFAGLQAEHAAQ----KTKHE  242
            + + + +   + T+    +F+D+ ++VE +A + +   ER     AE++ +     +  +
Sbjct  181  ASVTALFTKKEQTD--DARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQ  238

Query  243  QLANDLAQLRELLSQQADPSQ-PTRPVVTGGGAAVLTDC  280
            +    +A+L++ LS++    +   R+   ++ A+ LT+C
Sbjct  239  EQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

129) F504_3099 in NC_020799


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  174 bits (644),  Expect = 6e-45, Method: Compositional matrix adjust.
 Identities = 126/264 (48%), Positives = 183/264 (70%), Gaps = 14/264 (5%)

Query  33   MAKGTKFYRIATEGATSDGRVIDRETLVEIATNYDPKVYTARVNLEHIRGYDPTGPFKAY  92
            M+  +K +RI+ EGAT+DGR I+RE LV++A++Y+P VYTA +NLEHI++Y P + F+ Y
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  93   GDVTALKTEEQD-----GKMRLLAQIDPTDDLVAMTKARQKIFASMELNPSFADTGEAYL  147
            G VT+L +EE +     GKM L A+I+PTD LV + K  QK+F+SME++  FADTG AYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  148  IGLAVTDNPASLGCEVLQFSAKAQTNPLAARKQNPENLFTEAVEVSFDFSPEVTNYTATT  207
            +GL+ TD+PASLG E+L FSA A  NPLA RKQNPENLF+EAVE  +++       +   
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEE-----AQDE  175

Query  208  VPANFADSIKRLFSKQRRSDTNADARFadvqeavqtvaqqvqatgeqFSTALKAVTDQLS  267
             P+ FA S+  LF+K+ ++D   DARF+DV+ AV+ VA + Q  +E+   +L    ++LS
Sbjct  176  KPSLFA-SVTALFTKKEQTD---DARFSDVHKAVELVATEQQNLSERTDKSLAENGERLS  231

Query  268  AMNSQGAERDKQFNAMKAQLEKTD  291
            A++S   E++  F  ++ QL + D
Sbjct  232  ALESSLQEQQTAFAELQQQLSRED  255

130) XOO1713 in NC_006834


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  174 bits (643),  Expect = 6e-45, Method: Compositional matrix adjust.
 Identities = 114/279 (41%), Positives = 187/279 (68%), Gaps = 12/279 (4%)

Query  9    RSNWFRVAVEGATTDGRTIQRSWIDDMAATYNRETYGARIWIEHMRSLLPDSPFRAYGDV  68
            ++++FR++VEGATTDGR IQR W+ +MAA+YN   Y A I +EH++S LP+S F  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  69   TAVKAEEVEIDG--SKRLALFAQIEPTADLITINKSKQKLYTSIEVQEKFANTGKAYLVG  126
            T++ AEE++ DG  + ++AL+A+IEPT  L+ + K  QKL+TS+EV  KFA+TGKAYLVG
Sbjct  64   TGLVAEEIQ-DGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  127  LAVTDSPASLGTSMLIFASQHPDANPLADRKQSPGNLFTVAEETTLEFSEVSEGSVANLL  186
            L+ TD PASLGT ML F++  ++ NPLA+RKQ+P NLF+ A ET +E+ E  +   ++L+
Sbjct  123  LGATDDPASLGTEMLAFSASAAH-NPLANRKQNPENLFSEAVETLIELEEAQDEK-PSLF  180

Query  187  SRIRTALRSEDATNITAQQFADLGQGVEEIAEHVRGQDERFAGLQAEHAAQ----KTKHE  242
            + + + +   + T+    +F+D+ ++VE +A + +   ER     AE++ +     +  +
Sbjct  181  ASVTALFTKKEQTD--DARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQ  238

Query  243  QLANDLAQLRELLSQQADPSQ-PTRPVVTGGGAAVLTDC  280
            +    +A+L++ LS++    +   R+   ++ A+ LT+C
Sbjct  239  EQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

131) APECO1_4468 in NC_008563


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (641),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 125/284 (45%), Positives = 185/284 (66%), Gaps = 7/284 (2%)

Query  23   MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  82
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  83   YGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  142
            YG V+ L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  143  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  202
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  203  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQDV  262
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  263  TDRADETSQAFTRLKNSLDSTESLTQQRRSKATGGGGDALLTNC  306
                +E   AF+ L++ L   +S  + R+  + G++  + LTNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

132) ECOK1_0944 in NC_017628


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 186/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V+ L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQEV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFTRLKNSLDHTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L + +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

133) KO11_02920 in NC_017660


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 186/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V+ L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQDV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFTRLKNSLDHTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L + +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

134) gpO in NC_017660


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 186/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V+ L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQDV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFTRLKNSLDHTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L + +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

135) EKO11_1682 in NC_016902


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 186/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V+ L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQDV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFTRLKNSLDHTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L + +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

136) EKO11_4426 in NC_016902


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 186/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V+ L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQDV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFTRLKNSLDHTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L + +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

137) LY180_10855 in NC_022364


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 186/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V+ L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQDV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFTRLKNSLDHTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L + +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

138) LY180_20400 in NC_022364


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 186/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V+ L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQDV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFTRLKNSLDHTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L + +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

139) ECH74115_3051 in NC_011353


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (641),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 186/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V+ L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQEV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFSRLKNSLDHTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L + +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

140) ECSP_2866 in NC_013008


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (641),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 186/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V+ L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQEV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFSRLKNSLDHTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L + +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

141) ECOPMV1_04287 in NC_022370


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 186/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V+ L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQEV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFTRLKNSLDHTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L + +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

142) ECS88_2216 in NC_011742


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 186/284 (66%), Gaps = 7/284 (2%)

Query  23   MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  82
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  83   YGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  142
            YG V+ L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  143  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  202
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  203  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQEV  262
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  263  TDRADETSQAFTRLKNSLDHTESLTQQRRSKATGGGGDALMTNC  306
                +E   AF+ L++ L + +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

143) EcSMS35_4324 in NC_010498


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (639),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 185/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVVELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V  L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQDV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFTRLKNSLDHTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L + +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

144) gpO2 in NC_017635


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 186/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V+ L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQDV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFTRLKNSLDHTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L + +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

145) gpO in NC_017664


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 186/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V+ L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQDV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFTRLKNSLDHTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L + +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

146) WFL_20670 in NC_017664


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 186/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V+ L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQDV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFTRLKNSLDHTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L + +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

147) SSON53_23535 in NC_016822


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 186/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVAELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V+ L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQEV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFTRLKNSLDHTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L + +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

148) O in NC_003919


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (641),  Expect = 9e-45, Method: Compositional matrix adjust.
 Identities = 107/231 (47%), Positives = 164/231 (71%), Gaps = 7/231 (3%)

Query  9    RSNWFRVAVEGATTDGRTIQRSWIDDMAATYNRETYNARIWIEHMRSLLPDSPFRAYGDV  68
            ++++FR++VEGATTDGR IQR W+ +MAA+YN   Y A I +EH++S LP+S F  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  69   TAVKAEEVEIDG--TKRLALFAQIEPTADLITINKSKQKLYTSIEVQEKFANTGKAYLVG  126
            T++ AEE++ DG  + ++AL+A+IEPT  L+ + K  QKL+TS+EV  KFA+TGKAYLVG
Sbjct  64   TGLVAEEIQ-DGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  127  LAVTDSPASLGTSMLSFASQNPDANPLADRKQSPGNLFTVAEETALEFSEVSEGPVASLL  186
            L+ TD PASLGT ML+F++  ++ NPLA+RKQ+P NLF+ A ET +E+ E  +   +SL+
Sbjct  123  LGATDDPASLGTEMLAFSASAAH-NPLANRKQNPENLFSEAVETLIELEEAQDEK-PSLF  180

Query  187  SRIRTALKSEDATAITAEQFADLGEGIEQIAEHVRGQDERFDRLQAEHNEQ  237
            + + + +   + T     +F+D+  ++E +A + +   ER D+  AE+ E+
Sbjct  181  ASVTALFTKKEQTD--DARFSDVHKAVELVATEQQNLSERTDKSLAENGER  229

149) XAC29_13475 in NC_020800


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  173 bits (641),  Expect = 9e-45, Method: Compositional matrix adjust.
 Identities = 107/231 (47%), Positives = 164/231 (71%), Gaps = 7/231 (3%)

Query  9    RSNWFRVAVEGATTDGRTIQRSWIDDMAATYNRETYNARIWIEHMRSLLPDSPFRAYGDV  68
            ++++FR++VEGATTDGR IQR W+ +MAA+YN   Y A I +EH++S LP+S F  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  69   TAVKAEEVEIDG--TKRLALFAQIEPTADLITINKSKQKLYTSIEVQEKFANTGKAYLVG  126
            T++ AEE++ DG  + ++AL+A+IEPT  L+ + K  QKL+TS+EV  KFA+TGKAYLVG
Sbjct  64   TGLVAEEIQ-DGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  127  LAVTDSPASLGTSMLSFASQNPDANPLADRKQSPGNLFTVAEETALEFSEVSEGPVASLL  186
            L+ TD PASLGT ML+F++  ++ NPLA+RKQ+P NLF+ A ET +E+ E  +   +SL+
Sbjct  123  LGATDDPASLGTEMLAFSASAAH-NPLANRKQNPENLFSEAVETLIELEEAQDEK-PSLF  180

Query  187  SRIRTALKSEDATAITAEQFADLGEGIEQIAEHVRGQDERFDRLQAEHNEQ  237
            + + + +   + T     +F+D+  ++E +A + +   ER D+  AE+ E+
Sbjct  181  ASVTALFTKKEQTD--DARFSDVHKAVELVATEQQNLSERTDKSLAENGER  229

150) APECO78_08370 in NC_020163


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  172 bits (638),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 185/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVVELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V  L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMENAFSALKQEV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE  + +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFTRLKNSLDNTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L   +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

151) ECNA114_4028 in NC_017644


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  172 bits (638),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 185/284 (66%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVVELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V  L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQEV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFTRLKNSLDHTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L + +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

152) SEEH1578_06415 in NC_021810


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  172 bits (635),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 124/284 (44%), Positives = 184/284 (65%), Gaps = 7/284 (2%)

Query  1    MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKR  60
            M+ K  +F RIGVEG T DGR I  + + +MA +++P VY   INLEH+++ LP++ F+R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGDVVELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKC  120
            YG V  L AE I+D ++L GK AL+A I PTD L+ + K +QK++TSME+  +FA+TGK 
Sbjct  60   YGRVTGLVAEEIQD-GPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKA  118

Query  121  YLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENLISVATPVELEFEDLPETVFT  180
            YLVGL+ TDDPASLGTE L F  +A HNPL   K +PENL+S A    +E+E+  +    
Sbjct  119  YLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK-P  177

Query  181  ALTEKVKSIFGRKQASDDARLNDvheavtavaehvQEKLSATEQRLAEMETAFSALKQEV  240
            +L   V ++F +K+ +DDAR++DVH AV  VA + Q+    T++ LAE    +SAL   +
Sbjct  178  SLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  241  TDRADETSQAFTRLKNSLDSTESLTQQRRSKATGGGGDALMTNC  284
                +E   AF+ L++ L   +S  + R+  + G++  + +TNC
Sbjct  238  ----QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

153) SMWW4_v1c42470 in NC_020211


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  171 bits (634),  Expect = 3e-44, Method: Compositional matrix adjust.
 Identities = 124/285 (44%), Positives = 181/285 (64%), Gaps = 22/285 (7%)

Query  1    MAKKVTKFFRIGVEGDTVDGREIGAADIQQMAATYSPKVYGARINMEHIKGILPDGYFRR  60
            M+ K  +F RIGVEG T DGREI    + QMAA+Y+P VY A IN+EHIK+ LP++ F R
Sbjct  1    MTVKAKRF-RIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR  59

Query  61   YGGVVELKAEKIDEPDEPLLHGKWALYASLAPTADLVSMVGAGQKVFTSMEIRRDFAKTG  120
            YG V  L AE I++     L GK ALYA + PT  LV +V  GQK+FTSME+   FA TG
Sbjct  60   YGRVTGLVAEEIQDGP---LAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTG  116

Query  121  KSYLVGLAVTDDPASLGTDMLEFS----------RRHESVE-FSAPLEVCFDFEPVADPE  169
            K+YLVGL+ TDDPASLGT+ML FS          R++++ + FS ++E  +++E   D  
Sbjct  117  KAYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEK  176

Query  170  TSFSARIKSMFSRKQATDDVRFGEMEGAVMTVAEQLQEADARFTETFAALSEQVADLKQQ  229
             S+ A + ++F++K+ TDD RF++++ AV  VA + Q+   R   ++A  +E+++ L   
Sbjct  177  PSLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESS  236

Query  230  VKTGSDAFsalqaqlsasE---DFSQRARPDATGGNSAQDVLTDC  271
            ++    AF+ LQ QLS  +   D+ QR    A GG+++ + LT+C
Sbjct  237  LQEQQTAFAELQQQLSREDSRKDYRQR----APGGDAPAGTLTNC  277

154) Bcenmc03_0206 in NC_010508


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  168 bits (622),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 127/280 (46%), Positives = 178/280 (64%), Gaps = 20/280 (7%)

Query  7    KTKFFCIATEGATTDGRTIDRTMLEQMASSYDPKTYGARINMEHIRGMYPDGTFRAYGDV  66
            K+K F I+ EGATTDGR I+R  L QMA+SY+P  Y A IN+EHI++  P++TF  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  67   IALKAEEQD-----GKMRLLAQLSPTKDLVAMTTEQRQKVYTSMEVDPDFADTGEAYLVG  121
             +L AEE +     GKM L A++ PT  LV +     QK++TSMEV   FADTG AYLVG
Sbjct  64   TGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKG-QKLFTSMEVSTKFADTGKAYLVG  122

Query  122  LAVTDNPASLGTDMLAFSAK--HKAFDTRKQRPENLFSaaieadiefedeTPRTSDAGKS  179
            L+ TD+PASLGT+MLAFSA   H+++  RKQ PENLFS A+E+ IE+E+    + D   S
Sbjct  123  LGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEE----AQDEKPS  178

Query  180  LFSKVRGLLNRKEASDDQRFSDLSQSVVALAESQGQVLEQ-----LEKFNTNFDELKRAQ  234
            LF+ V +L+ +KE +DD RFSD+ +  V L  ++ Q L +     L      +  L  + 
Sbjct  179  LFASVTALFTKKEQTDDARFSDV-HKAVELVATEQQNLSERTDKSLAENGERLSALESSL  237

Query  235  QAGDKRHSDLVQKLSRTDSSTQ--QRPTSTGSDNGAQTDC  272
            Q  +   ++L Q+LSR DS  +  QR+ + ++  G+ T+C
Sbjct  238  QEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTNC  277

155) H045_14160 in NC_020209


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  168 bits (623),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 123/285 (44%), Positives = 196/285 (69%), Gaps = 16/285 (5%)

Query  13   RSKFFRVAVEGATTDGRQIERQWLVDAAETYSQNTYGARVWIEHMRSLMPDSPFRAYGDV  72
            ++K FR++VEGATTDGR+I+R+WLV+ A +Y+   Y A + +EH++S +P+S F  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  73   VALKTEEVEIAG-AKKLALFAQIEPTADLVAMNKARQKMFTSIEIRPKFADTGRAYLDGI  131
             +L +EE++ +  A K+AL+A+IEPT  LV + K  QK+FTS+E+  KFADTG+AYL G+
Sbjct  64   TGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  132  AVTDTPASLGTEMLTFSAQHPDMNPLANRKRDPANlfseaieielefeevedesGKVAGL  191
            + TD PASLGTEML+FSA  ++ NPLANRK++P NLFSEA+E  +E+EE +DE    ++L
Sbjct  124  GATDDPASLGTEMLAFSASAAH-NPLANRKQNPENLFSEAVETLIELEEAQDEK---PSL  179

Query  192  FSRVLDLLGKSKDKEGKDAALFTELGEAVEAMA---EHVAGQGEAFTAEKTAR-EKLQTA  247
            F+ V  L+ K   KE  D A F+++  AVE +A   ++++ + +   AE+  R   L+++
Sbjct  180  FASVTALFTK---KEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESS  236

Query  248  HEKLSADFTALVQQLEKTPDTTGQKPQYSVRPPATGGDGALVTDC  292
             +   + F+ L QQL +     + + +Y  R+P+ ++ ++ +T+C
Sbjct  237  LQEQQTAFAELQQQLSR----EDSRKDYRQRAPGGDAPAGTLTNC  277

156) L483_01355 in NC_021491


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  167 bits (619),  Expect = 5e-43, Method: Compositional matrix adjust.
 Identities = 123/275 (45%), Positives = 179/275 (66%), Gaps = 19/275 (6%)

Query  12   RSDWFRIFVEGATTDGRTIERSWIEQMAATYDPKTYGARLNCEHIRGLGPDSLFGSFGDV  71
            ++ +FRI VEGATTDGR I+R W+ QMAA+Y+P  Y A +N EHI++  P+S F  +G V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  72   LALKAEEVEIGG-EKKLALYGKIEPTASLIELNKKGQKIYTSAEVQLNFAESGKAYLVGL  130
             +L AEE++ G    K+ALY+ IEPT +L+EL KKGQK++TS EV  +FA++GKAYLVGL
Sbjct  64   TGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  131  AVTDSPASLGTEALKFS---SQSGLAARKQHQDNLFSAAEEVSLKFEEVV-ETPSMFAAL  186
            + TD PASLGTE L FS   +++ LA RKQ+ +NLFS A E  + +EE   E PS+FA+ 
Sbjct  124  GATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLFAS-  182

Query  187  RDKVGELLGKSKDKEGKDAASFTALGELIEQIATHG---AEQAEAFTAEKNAR-EKLQAD  242
               V  L+ K   KE  D A F+ +   +E +AT+    +E+++   AE+  R   L++ 
Sbjct  183  ---VTALFTK---KEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESS  236

Query  243  HDKLSKDFNELVKRLGETEDHSQ-TQRPPVTGGDG  276
             +     F EL ++L+  + + +  QR+P  GGD+
Sbjct  237  LQEQQTAFAELQQQLSREDSRKDYRQRAP--GGDA  269

157) PFLCHA0_c20670 in NC_021237


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  165 bits (608),  Expect = 5e-42, Method: Compositional matrix adjust.
 Identities = 115/285 (41%), Positives = 194/285 (69%), Gaps = 16/285 (5%)

Query  67   RSKFFRVAVEGATTDGRQIERQWLVDAAETYSLNTYGARVWIEHMRSLLPDSPFRAYGDV  126
            ++K FR++VEGATTDGR+I+R+WLV+ A +Y+   Y A + +EH++S LP+S F  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  127  VALKTEEVEIAG-AKKLALFAQIEPTADLVNMNKARQKLYTSIEIRPKFADTGRAYLDGI  185
             +L +EE++ +  A K+AL+A+IEPT  LV++ K  QKL+TS+E+  KFADTG+AYL G+
Sbjct  64   TGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  186  AVTDTPASLGTEMLTFSAQNPDKNPLAARKRDSSNLFSeaievalefeevedeGGKVAGL  245
            + TD PASLGTEML+FSA ++  NPLA RK+++ NLFSEA+E  +E+EE +   +  ++L
Sbjct  124  GATDDPASLGTEMLAFSA-SAAHNPLANRKQNPENLFSEAVETLIELEEAQ---DEKPSL  179

Query  246  FSRVLDLLGKSKDKEGKDAILFTELGEAVEAMA---EHVAGQGQAFAAEKAAR-ESLLAK  301
            F+ V  L+ K   KE  D   F+++  AVE +A   ++++ + +   AE++ R  +L + 
Sbjct  180  FASVTALFTK---KEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESS  236

Query  302  HEKLAADFSTLMEKLEKTPAGTSQQPQFTARPAATGGDGALVTDC  346
             +   + F+ L ++L +  +    + ++  R+++ ++ ++ +T+C
Sbjct  237  LQEQQTAFAELQQQLSREDS----RKDYRQRAPGGDAPAGTLTNC  277

158) PC1_2642 in NC_012917


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  163 bits (603),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 115/286 (41%), Positives = 186/286 (66%), Gaps = 21/286 (7%)

Query  4    SKPFLAAVEGATCDGRTLERAHISQMAKNFNKQVRGARVNLEHIRGYSPTSDFRAYGDVE  63
            +K F  +VEGAT DGR ++R  + QMA ++N  V  A +NLEHI++Y P S F  YG V 
Sbjct  5    AKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVT  64

Query  64   EVSEFEIQDGPLKGKLALQIKIDATDDMVALNTKRQKIYPSIEIHPSFADTGEAYLMGLG  123
             +   EIQDGPL GK+AL   I++TD +V L  K QK++ S+E+   FADTG AYL+GLG
Sbjct  65   GLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGLG  124

Query  124  MTDDPASLGVGILEFNAKCAGKGPLDGRKTSPECFFT-AADTPITLefeeeapageagKN  182
             TDDPASLG  +L F+A  A+  PL  RK +PE +F+ A +T I LE  ++  +     +
Sbjct  125  ATDDPASLGTEMLAFSA-SAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKP-----S  178

Query  183  FFSRITELLTGSQQ----RFSKENGELKQAVELIAKSQRELLDKTE-TFSALQAQNTELK  237
            +F+ +T L+T  +Q    RFS    ++ +AVEL+A  Q++L ++T+ +++    + + L 
Sbjct  179  LFASVTALFTKKEQTDDARFS----DVHKAVELVATEQQNLSERTDKSLAENGERLSALE  234

Query  238  GNVETLNKSLTELKEQLAGQDG--NFSQRPPASGGNPQSGIVLADC  281
            ++++  + +++EL++QL+ +D+  ++ QR+P  GG++ +G  L++C
Sbjct  235  SSLQEQQTAFAELQQQLSREDSRKDYRQRAP--GGDAPAG-TLTNC  277

159) B479_16730 in NC_019905


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  163 bits (604),  Expect = 7e-42, Method: Compositional matrix adjust.
 Identities = 125/280 (45%), Positives = 186/280 (67%), Gaps = 16/280 (5%)

Query  13   RSKWTRIAVEGATTDGRNIERSWIEDMASTYSPNTYGARINCEHIKWAWPGGEFGAYGDV  72
            ++K+ RI+VEGATTDGR+I+R W+ +MA++Y+P  Y A IN EHIK   P + F  YG V
Sbjct  4    KAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRV  63

Query  73   FSLKAEEVEINKVK-KLALFAQLEPNDALIALNKAGQKVYTSIEVDPKFADTGKAYLVGL  131
             +L AEE++   +  K+AL+A++EP DAL+ L K GQK++TS+EV  KFADTGKAYLVGL
Sbjct  64   TGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGL  123

Query  132  AVTDTPASLGTEALSF--SAQHGSLASRKTSKDNLFSaaeettfefeeITD-TPSVFASL  188
            + TD PASLGTE L+F  SA H +LA+RK + +NLFS A ET +E+EE  D  PS+FAS 
Sbjct  124  GATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKPSLFAS-  182

Query  189  GKKVSELLGKSKDKEGKDAASFAALGEMIEQIATHG---AEQAEAFSAEKAAR-EKLQAD  244
               V+ L+ K   KE  D A F+ +   +E +AT+    +E+++   AE++ R   L++ 
Sbjct  183  ---VTALFTK---KEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESS  236

Query  245  HDKLSKDFNELVKRLGETEDHSQ-AQRPPVTGGDGQVLAE  283
             +     F EL ++L+  + + +  QR+P  ++ +  L++
Sbjct  237  LQEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTN  276

160) O in NC_017671


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  162 bits (599),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 124/299 (42%), Positives = 197/299 (66%), Gaps = 35/299 (11%)

Query  17   MASKTKKRSEFFRVAVEGATTDGRVIERQQIADIAETYDPEVYGARIWLEHFRSTLPDSP  76
            M+ K+K+    FR++VEGATTDGR I+R+ + ++A +Y+P VY A I LEH++S LP+S 
Sbjct  1    MTVKAKR----FRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPEST  56

Query  77   FRAYGDVLAVKAEEVE---IAGKKKLALFAQVEPTDDLVDMVNVRKQKVFTSIEISPEFA  133
            F  YG V ++ AEE++   +AGK  +AL+A++EPTD LV++V+ + QK+FTS+E+S  FA
Sbjct  57   FNRYGRVTGLVAEEIQDGPLAGK--MALYADIEPTDALVELVK-KGQKLFTSMEVSTKFA  113

Query  134  DSGKAYLFGLAVTDSPASLGTSMLAFSAQHPDSSPLKDRKQAPENLFTEATETVIKFTAE  193
            D+GKAYL GL+ TD PASLGT MLAFSA  +  +PL +RKQ PENLF+EA ET+I +  E
Sbjct  114  DTGKAYLVGLGATDDPASLGTEMLAFSA-SAAHNPLANRKQNPENLFSEAVETLIEL--E  170

Query  194  DESEGRP---GPVAAFLSSLGLGkkaapapakEDPEFNVAEFAAQLLGAVGEQ-----DA  245
            +  + +P   ++V+A+++              +D+ F+  + A +L+++  ++     D 
Sbjct  171  EAQDEKPSLFASVTALFTK---------KEQTDDARFSDVHKAVELVATEQQNLSERTDK  221

Query  246  AMAKLGQDNRALREQVQALSTQVAGLRKRL--DDTPQAFTQRPVVPGGKDVEAANITDC  302
            ++A  G+   AL   +Q   T  A L+++L  +D+ + + QR+  PGG D  A+ +T+C
Sbjct  222  SLAENGERLSALESSLQEQQTAFAELQQQLSREDSRKDYRQRA--PGG-DAPAGTLTNC  277

161) Hsero_0908 in NC_014323


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  160 bits (591),  Expect = 8e-41, Method: Compositional matrix adjust.
 Identities = 121/283 (43%), Positives = 187/283 (67%), Gaps = 11/283 (3%)

Query  1    MATKSKFFRVATEGATTDGRSISREQIQQMADNYNVKTYGARVWVEHLRSLLPDGPFKAY  60
            M+ K+K FR++ EGATTDGR I RE + QMA +YN   Y A + +EH++S LP++ F+ Y
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRY  60

Query  61   GDVLALKAEEVDTDA-GKRLALFAQIEPTPALVAMNKDRQKIYTSIELADKFADISSAYL  119
            G V +L AEE++ ++ + ++AL+A+IEPT ALV + K  QK++TS+E++ KFAD + AYL
Sbjct  61   GRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYL  120

Query  120  VGLAVTDSPASLGTEILQFSASNPKASPFTPRKLKPENLFSEGVETKIEFE---DDGPSV  176
            VGL+ TD PASLGTE+L FSAS +  +P++ RK +PENLFSE+VET IE+E   D+ PS+
Sbjct  121  VGLGATDDPASLGTEMLAFSASAAH-NPLANRKQNPENLFSEAVETLIELEEAQDEKPSL  179

Query  177  AETIKQIFSRFGGSEKKADAQHADVVAAMTAVAEKVGEFaqvatqaakdaaeavtRLEKL  236
              ++  +F++    E+  DA+ +DV  A+  VA    ++   + ++ K  AE   RL  L
Sbjct  180  FASVTALFTK---KEQTDDARFSDVHKAVELVATEQQNL---SERTDKSLAENGERLSAL  233

Query  237  EKRVGDESTAAEQFRQTINLTDKNDVQRPPATGGSNSGVVLTE  279
            E  + ++ TA  +++Q ++  D     R  A GG  ++  LT+
Sbjct  234  ESSLQEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTN  276

162) UMNK88_1025 in NC_017641


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  154 bits (567),  Expect = 6e-39, Method: Compositional matrix adjust.
 Identities = 99/241 (42%), Positives = 161/241 (67%), Gaps = 12/241 (4%)

Query  10   KKFRVAVSGSTVDGREISPVHLREAAENFNPDVYAARVNVEH---YLSPCPSSEFSAMGD  66
            K+FR++V G+T DGREI    L + A ++NP VY+A +N+EH   YL   P S F+  G 
Sbjct  6    KRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYL---PESTFNRYGR  62

Query  67   VTALSTEDITEGPLAGRTALYAEIEPTERMKQLVADGKKIYSSIELHPQFSVNGRAYLVG  126
            VT+L +E+I +GPLAG+ ALYA+IEPT+ + +LV  G+K+++S+E+  +F+  G+AYLVG
Sbjct  63   VTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  127  LAMTDTPASLGTERLKFTAQQRQAVMTFNSIQGEAPLISEAIESEIVEMAEQRQEEGTQW  186
            L+ TD PASLGTE L F+A   +  ++ N  Q    L+SEA+E+ ++E+ E+ Q+E    
Sbjct  123  LGATDDPASLGTEMLAFSASAAHNPLA-NRKQNPENLFSEAVET-LIEL-EEAQDEKPSL  179

Query  187  FNRVMGIIGRGRKADDASFSRIQEAVEGVATSQADIIDRFNVLETRHQQDRQKITSLTTE  246
            F  V +++ +  ++DDA FS ++ AVE VAT Q ++ +R    +    ++ +++++L + 
Sbjct  180  FASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSER---TDKSLAENGERLSALESS  236

Query  247  L  247
            L
Sbjct  237  L  237

163) PFLU1589 in NC_012660


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  152 bits (562),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 121/281 (44%), Positives = 189/281 (68%), Gaps = 16/281 (5%)

Query  17   FRVAVEGATTDGRQIERQWLVDAAETYSQNTYGARVWIEHMRSLLPDSPFRAYGDVVALK  76
            FR++VEGATTDGR+I+R+WLV+ A +Y+   Y A + +EH++S LP+S F  YG V +L 
Sbjct  8    FRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVTGLV  67

Query  77   TEEVEIAG-AKKLALFAQIQPTADLVTMNKARQKLYTSIEIRPKFADTGRAYLDGIAVTD  135
            +EE++ +  A K+AL+A+I+PT  LV + K  QKL+TS+E+  KFADTG+AYL G++ TD
Sbjct  68   AEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGLGATD  127

Query  136  TPASLGTEMLTFSAQHPDMNPLAGRKRDPGNlfseaieielefeevedesGKVTGLFSRV  195
             PASLGTEML+FSA  ++ NPLA RK++P NLFSEA+E  +E+EE +DE     +LF+ V
Sbjct  128  DPASLGTEMLAFSASAAH-NPLANRKQNPENLFSEAVETLIELEEAQDEK---PSLFASV  183

Query  196  LELLGKSKDKEGKDAALFTELGeaveamaehvahQGEAFA---AEKSAR-EKLQAAHDKL  251
              L+ K   KE  D A F+++  AVE +A +  + +E      AE++ R   L+++ +  
Sbjct  184  TALFTK---KEQTDDARFSDVHKAVELVATEQQNLSERTDKSLAENGERLSALESSLQEQ  240

Query  252  STDFTALVGKLEKTPDTTGKQPQYSVRPPATGGDGALVTDC  292
             T F+ L  +L +     + + +Y  R+P+ ++ ++ +T+C
Sbjct  241  QTAFAELQQQLSR----EDSRKDYRQRAPGGDAPAGTLTNC  277

164) O in NC_011748


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  140 bits (513),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 143/219 (66%), Gaps = 9/219 (4%)

Query  21   KKFRVAVSGSTVDGREISQVHLREAAENFNPDVYAARVNVEH---YLSPCPSSEFSAMGD  77
            K+FR++V G+T DGREI +  L + A ++NP VY+A +N+EH   YL   P S F+  G 
Sbjct  6    KRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYL---PESTFNRYGR  62

Query  78   VTALSTEDITEGPLAGRTALYAEIEPTERMKQLVADGKKIYSSIELHPQFSVNGRAYLVG  137
            VT+L +E+I +GPLAG+ ALYA+IEPT+ + +LV  G+K+++S+E+  +F+  G+AYLVG
Sbjct  63   VTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  138  LAMTDTPASLGTERLKFTAQQRQAVMTFNSIQGEAPLiseaieseiiemaeQRQEEGTQW  197
            L+ TD PASLGTE L F+A   +  +   + + + P    +   E +   E+ Q+E    
Sbjct  123  LGATDDPASLGTEMLAFSASAAHNPL---ANRKQNPENLFSEAVETLIELEEAQDEKPSL  179

Query  198  FNRVMGIIGRGRKADDASFSRIQEAVEGVATSQADIIDR  236
            F  V +++ +  ++DDA FS ++ AVE VAT Q ++ +R
Sbjct  180  FASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSER  218

165) SSON53_08280 in NC_016822


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  139 bits (512),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 142/219 (65%), Gaps = 9/219 (4%)

Query  10   KKFRVAVSGSTVDGREISPVHLREAAENFNPDVYAARVNVEH---YLSPCPSSEFSAMGD  66
            K+FR++V G+T DGREI    L + A ++NP VY+A +N+EH   YL   P S F+  G 
Sbjct  6    KRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYL---PESTFNRYGR  62

Query  67   VTALSTEDITEGPLAGRTALYAEIEPTERMKQLVADGKKIYSSIELHPQFSVNGRAYLVG  126
            VT+L +E+I +GPLAG+ ALYA+IEPT+ + +LV  G+K+++S+E+  +F+  G+AYLVG
Sbjct  63   VTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  127  LAMTDTPASLGTERLKFTAQQRQAVMTFNSIQGEAPLiseaieseiiemaeQRQEEGTQW  186
            L+ TD PASLGTE L F+A   +  +   + + + P    +   E +   E+ Q+E    
Sbjct  123  LGATDDPASLGTEMLAFSASAAHNPL---ANRKQNPENLFSEAVETLIELEEAQDEKPSL  179

Query  187  FNRVMGIIGRGRKADDASFSRIQEAVESVATSQADIIDR  225
            F  V +++ +  ++DDA FS ++ AVE VAT Q ++ +R
Sbjct  180  FASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSER  218

166) ECO103_1876 in NC_013353


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 142/219 (65%), Gaps = 9/219 (4%)

Query  10   KKFRVAVSGSTVDGREISPVHLREAAENFNPDVYAARVNVEH---YLSPCPSSEFSAMGD  66
            K+FR++V G+T DGREI    L + A ++NP VY+A +N+EH   YL   P S F+  G 
Sbjct  6    KRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYL---PESTFNRYGR  62

Query  67   VTALSTEDITEGPLAGRTALYAEIEPTERMKQLVADGKKIYSSIELHPQFSVNGRAYLVG  126
            VT+L +E+I +GPLAG+ ALYA+IEPT+ + +LV  G+K+++S+E+  +F+  G+AYLVG
Sbjct  63   VTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  127  LAMTDTPASLGTERLKFTAQQRQAVMTFNSVQGEAPLiseaieseiiemaeQRQEEGTQW  186
            L+ TD PASLGTE L F+A   +  +   + + + P    +   E +   E+ Q+E    
Sbjct  123  LGATDDPASLGTEMLAFSASAAHNPL---ANRKQNPENLFSEAVETLIELEEAQDEKPSL  179

Query  187  FNRVMGIIGRGRKADDASFSRIQEAVEGVATSQADIIDR  225
            F  V +++ +  ++DDA FS ++ AVE VAT Q ++ +R
Sbjct  180  FASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSER  218

167) ECO111_2195 in NC_013364


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 142/219 (65%), Gaps = 9/219 (4%)

Query  10   KKFRVAVSGSTVDGREISPVHLREAAENFNPDVYAARVNVEH---YLSPCPSSEFSAMGD  66
            K+FR++V G+T DGREI    L + A ++NP VY+A +N+EH   YL   P S F+  G 
Sbjct  6    KRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYL---PESTFNRYGR  62

Query  67   VTALSTEDITEGPLAGRTALYAEIEPTERMKQLVADGKKIYSSIELHPQFSVNGRAYLVG  126
            VT+L +E+I +GPLAG+ ALYA+IEPT+ + +LV  G+K+++S+E+  +F+  G+AYLVG
Sbjct  63   VTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  127  LAMTDTPASLGTERLKFTAQQRQAVMTFNSVQGEAPLiseaieseiiemaeQRQEEGTQW  186
            L+ TD PASLGTE L F+A   +  +   + + + P    +   E +   E+ Q+E    
Sbjct  123  LGATDDPASLGTEMLAFSASAAHNPL---ANRKQNPENLFSEAVETLIELEEAQDEKPSL  179

Query  187  FNRVMGIIGRGRKADDASFSRIQEAVEGVATSQADIIDR  225
            F  V +++ +  ++DDA FS ++ AVE VAT Q ++ +R
Sbjct  180  FASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSER  218

168) G2583_2129 in NC_013941


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 142/219 (65%), Gaps = 9/219 (4%)

Query  10   KKFRVAVSGSTVDGREISPVHLREAAENFNPDVYAARVNVEH---YLSPCPSSEFSAMGD  66
            K+FR++V G+T DGREI    L + A ++NP VY+A +N+EH   YL   P S F+  G 
Sbjct  6    KRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYL---PESTFNRYGR  62

Query  67   VTALSTEDITEGPLAGRTALYAEIEPTERMKQLVADGKKIYSSIELHPQFSVNGRAYLVG  126
            VT+L +E+I +GPLAG+ ALYA+IEPT+ + +LV  G+K+++S+E+  +F+  G+AYLVG
Sbjct  63   VTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  127  LAMTDTPASLGTERLKFTAQQRQAVMTFNSVQGEAPLiseaieseiiemaeQRQEEGTQW  186
            L+ TD PASLGTE L F+A   +  +   + + + P    +   E +   E+ Q+E    
Sbjct  123  LGATDDPASLGTEMLAFSASAAHNPL---ANRKQNPENLFSEAVETLIELEEAQDEKPSL  179

Query  187  FNRVMGIIGRGRKADDASFSRIQEAVEGVATSQADIIDR  225
            F  V +++ +  ++DDA FS ++ AVE VAT Q ++ +R
Sbjct  180  FASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSER  218

169) ECSE_1853 in NC_011415


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 142/219 (65%), Gaps = 9/219 (4%)

Query  10   KKFRVAVSGSTVDGREISPVHLREAAENFNPDVYAARVNVEH---YLSPCPSSEFSAMGD  66
            K+FR++V G+T DGREI    L + A ++NP VY+A +N+EH   YL   P S F+  G 
Sbjct  6    KRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYL---PESTFNRYGR  62

Query  67   VTALSTEDITEGPLAGRTALYAEIEPTERMKQLVADGKKIYSSIELHPQFSVNGRAYLVG  126
            VT+L +E+I +GPLAG+ ALYA+IEPT+ + +LV  G+K+++S+E+  +F+  G+AYLVG
Sbjct  63   VTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  127  LAMTDTPASLGTERLKFTAQQRQAVMTFNSVQGEAPLiseaieseiiemaeQRQEEGTQW  186
            L+ TD PASLGTE L F+A   +  +   + + + P    +   E +   E+ Q+E    
Sbjct  123  LGATDDPASLGTEMLAFSASAAHNPL---ANRKQNPENLFSEAVETLIELEEAQDEKPSL  179

Query  187  FNRVMGIIGRGRKADDASFSRIQEAVEGVATSQADIIDR  225
            F  V +++ +  ++DDA FS ++ AVE VAT Q ++ +R
Sbjct  180  FASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSER  218

170) ETEC_1991 in NC_017633


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  138 bits (508),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 142/219 (65%), Gaps = 9/219 (4%)

Query  10   KKFRVAVSGSTVDGREISPVHLREAAENFNPDVYAARVNVEH---YLSPCPSSEFSAMGD  66
            K+FR++V G+T DGREI    L + A ++NP VY+A +N+EH   YL   P S F+  G 
Sbjct  6    KRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYL---PESTFNRYGR  62

Query  67   VTALSTEDITEGPLAGRTALYAEIEPTERMKQLVADGKKIYSSIELHPQFSVNGRAYLVG  126
            VT+L +E+I +GPLAG+ ALYA+IEPT+ + +LV  G+K+++S+E+  +F+  G+AYLVG
Sbjct  63   VTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  127  LAMTDTPASLGTERLKFTAQQRQAVMTFNSIQGEAPLiseaieseiiemaeQRQEEGTQW  186
            L+ TD PASLGTE L F+A   +  +   + + + P    +   E +   E+ Q+E    
Sbjct  123  LGATDDPASLGTEMLAFSASAAHNPL---ANRKQNPENLFSEAVETLIELEEAQDEKPSL  179

Query  187  FNRVMGIIGRGRKADDASFSRIQEAVEGVATSQADIIDR  225
            F  V +++ +  ++DDA FS ++ AVE VAT Q ++ +R
Sbjct  180  FASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSER  218

171) ECNA114_0860 in NC_017644


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  138 bits (508),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 142/219 (65%), Gaps = 9/219 (4%)

Query  10   KKFRVAVSGSTVDGREISPVHLREAAENFNPDVYAARVNVEH---YLSPCPSSEFSAMGD  66
            K+FR++V G+T DGREI    L + A ++NP VY+A +N+EH   YL   P S F+  G 
Sbjct  6    KRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYL---PESTFNRYGR  62

Query  67   VTALSTEDITEGPLAGRTALYAEIEPTERMKQLVADGKKIYSSIELHPQFSVNGRAYLVG  126
            VT+L +E+I +GPLAG+ ALYA+IEPT+ + +LV  G+K+++S+E+  +F+  G+AYLVG
Sbjct  63   VTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  127  LAMTDTPASLGTERLKFTAQQRQAVMTFNSIQGEAPLiseaieseiiemaeQRQEEGTQW  186
            L+ TD PASLGTE L F+A   +  +   + + + P    +   E +   E+ Q+E    
Sbjct  123  LGATDDPASLGTEMLAFSASAAHNPL---ANRKQNPENLFSEAVETLIELEEAQDEKPSL  179

Query  187  FNRVMGIIGRGRKADDASFSRIQEAVEGVATSQADIIDR  225
            F  V +++ +  ++DDA FS ++ AVE VAT Q ++ +R
Sbjct  180  FASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSER  218

172) ECO26_2777 in NC_013361


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  137 bits (505),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 90/219 (42%), Positives = 142/219 (65%), Gaps = 9/219 (4%)

Query  10   KKFRVAVSGSTVDGREISPVHLREAAENFNPDVYAARVNVEH---YLSPCPSSEFSAMGD  66
            K+FR++V G+T DGREI    L + A ++NP VY+A +N+EH   YL   P S F+  G 
Sbjct  6    KRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYL---PESTFNRYGR  62

Query  67   VTALSTEDITEGPLAGRTALYAEIEPTERMKQLIADGKKIYSSIELHPQFSVNGRAYLVG  126
            VT+L +E+I +GPLAG+ ALYA+IEPT+ + +L+  G+K+++S+E+  +F+  G+AYLVG
Sbjct  63   VTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVG  122

Query  127  LAMTDTPASLGTERLKFTAQQRQAVMTFNSIQGEAPLiseaieseiiemaeQRQEEGTQW  186
            L+ TD PASLGTE L F+A   +  +   + + + P    +   E +   E+ Q+E    
Sbjct  123  LGATDDPASLGTEMLAFSASAAHNPL---ANRKQNPENLFSEAVETLIELEEAQDEKPSL  179

Query  187  FNRVMGIIGRGRKADDASFSRIQEAVEGVATSQVDIIDR  225
            F  V +++ +  ++DDA FS ++ AVE VAT Q ++ +R
Sbjct  180  FASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSER  218

173) K756_05615 in NC_021521


> NC_003198_P9|103|G93|16763091|NP_458708.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|82715..83548|STY4626|-|putative 
capsid protein
Length=277

 Score =  136 bits (500),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 94/222 (43%), Positives = 146/222 (66%), Gaps = 25/222 (11%)

Query  1    MPKKSNWFVVATEGATVDGRQIERQWLSDIAETYDPKTYGARINLEHFHLFWFDPELAHS  60
            M  K+++F ++ EGAT DGR+I+R+WL ++A +Y+P  Y A INLEH+  +  ++ + + 
Sbjct  1    MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNR-  59

Query  61   KCYGDVLAVKAEENDEG----KLQLYAQIEPTDELVELVKSKQKVYTSIEVRTNFAKTGK  116
              YG V ++ AEE ++G    K+ LYA+IEPTD LVELVK  QK++TS+EV T+FA TGK
Sbjct  60   --YGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGK  117

Query  117  AYLTGLAVTDTPASLGTQYLSFTTKNGE-------QQGEIFTTEAVECSLTFAE---EPV  166
            AYL GL+ TD PASLGT+ L+F++  ++       Q+ E + +EAVE  + + E   E  
Sbjct  118  AYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFSEAVETLIELEEAQDEKP  177

Query  167  SFFEKMKAMFSKEKADTAQHKADVEARFAE-HEQTQLLLAEK  207
            S+F  + A+F+K K +T       +ARF++ H   +L+ +E+
Sbjct  178  SLFASVTALFTK-KEQTD------DARFSDVHKAVELVATEQ  212