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PAthogenisity Island DataBase (PAI DB)

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Homologs of api95 gene of AJ627388

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) YpsIP31758_3686
( YP_001402640.1 )

phage integrase

NC_009708
(Yersinia pseudotuberculosis IP 31758)

4e-151

2) YE3450
( YP_001007614.1 )

phage integrase

NC_008800
(Yersinia enterocolitica 8081)

2e-145

3) Ser39006_1551
( YP_008521933.1 )

integrase family protein

NC_022268
(Serratia sp. ATCC 39006)

1e-122

4) W5S_3422
( YP_006284364.1 )

Tyrosine recombinase XerD

NC_017845
(Pectobacterium sp. SCC3193)

5e-112

5) Pecwa_0710
( YP_003258138.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

7e-112

6) EPYR_00494
( YP_005801245.1 )

tyrosine recombinase XerD

NC_017390
(Erwinia pyrifoliae DSM 12163)

9e-104

7) EPYR_03243
( YP_005803994.1 )

tyrosine recombinase XerD

NC_017390
(Erwinia pyrifoliae DSM 12163)

9e-104

8) EpC_04710
( YP_002647508.1 )

integrase

NC_012214
(Erwinia pyrifoliae Ep1/96)

9e-104

9) EpC_30050
( YP_002649986.1 )

phage integrase

NC_012214
(Erwinia pyrifoliae Ep1/96)

9e-104

10) SPAB_05449
( YP_001591555.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

3e-103

11) EJP617_06960
( YP_005817264.1 )

integrase

NC_017445
(Erwinia sp. Ejp617)

3e-102

12) PAJ_2539
( YP_005935415.1 )

site-specific recombinase XerD

NC_017531
(Pantoea ananatis AJ13355)

2e-99

13) xerC1
( YP_005197343.1 )

phage integrase

NC_016816
(Pantoea ananatis LMG 5342)

1e-98

14) PAGR_g3784
( YP_005994493.1 )

putative integrase

NC_017554
(Pantoea ananatis PA13)

1e-98

15) ECL_00532
( YP_003611047.1 )

putative integrase

NC_014121
(Enterobacter cloacae ATCC 13047)

1e-94

16) EAM_2852
( YP_003539919.1 )

integrase (partial)

NC_013971
(Erwinia amylovora ATCC 49946)

5e-86

17) STY4666
( NP_458745.1 )

probable phage integrase

NC_003198
(Salmonella enterica CT18)

1e-81

18) STBHUCCB_46130
( YP_005220029.1 )

Phage integrase

NC_016832
(Salmonella enterica P-stx-12)

1e-81

19) t4357
( NP_807950.1 )

phage integrase

NC_004631
(Salmonella enterica Ty2)

1e-81

20) TY21A_22190
( YP_007928598.1 )

phage integrase

NC_021176
(Salmonella enterica Ty21a)

1e-81

21) Y11_23521
( YP_006005851.1 )

putative phage integrase

NC_017564
(Yersinia enterocolitica Y11)

2e-80

22) YE105_C3207
( YP_004299404.1 )

Phage integrase

NC_015224
(Yersinia enterocolitica 105.5R(r))

1e-79

23) LF82_703
( YP_002559041.1 )

phage integrase

NC_011993
(Escherichia coli LF82)

1e-77

24) NRG857_21025
( YP_006122547.1 )

putative phage integrase

NC_017634
(Escherichia coli NRG 857C)

1e-77

25) Spro_4048
( YP_001480271.1 )

integrase family protein

NC_009832
(Serratia proteamaculans 568)

2e-76

26) CFSAN002050_21945
( YP_008262256.1 )

tyrosine recombinase XerD

NC_021818
(Salmonella enterica CFSAN002050)

1e-75

27) UMNK88_5071
( YP_006136710.1 )

hypothetical protein

NC_017641
(Escherichia coli UMNK88)

7e-75

28) NT01EI_0370
( YP_002931847.1 )

site-specific recombinase, phage integrase family protein

NC_012779
(Edwardsiella ictaluri 93-146)

1e-74

29) plu1166
( NP_928478.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

5e-69

30) XNC1_3129
( YP_003713301.1 )

phage integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

1e-67

31) plu1029
( NP_928358.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

1e-67

32) XNC1_3598
( YP_003713735.1 )

phage integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

1e-67

33) XBJ1_1459
( YP_003467376.1 )

phage integrase

NC_013892
(Xenorhabdus bovienii SS-2004)

1e-67

34) XNC1_3639
( YP_003713771.1 )

phage integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

9e-67

35) XNC1_3506
( YP_003713655.1 )

phage integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

3e-66

36) XBJ1_1557
( YP_003467464.1 )

tyrosine recombinase-like

NC_013892
(Xenorhabdus bovienii SS-2004)

6e-66

37) SerAS9_0340
( YP_004503757.1 )

integrase

NC_015567
(Serratia plymuthica AS9)

3e-65

38) SerAS12_0340
( YP_004498805.1 )

integrase family protein

NC_015566
(Serratia sp. AS12)

3e-65

39) SerAS13_0340
( YP_006023220.1 )

integrase family protein

NC_017573
(Serratia sp. AS13)

3e-65

40) YPZ3_0342
( YP_003566514.1 )

integrase

NC_014029
(Yersinia pestis Z176003)

4e-65

41) M621_21450
( YP_008161048.1 )

tyrosine recombinase XerD

NC_021659
(Serratia plymuthica S13)

8e-65

42) Spro_4117
( YP_001480340.1 )

integrase family protein

NC_009832
(Serratia proteamaculans 568)

2e-64

43) Spro_0401
( YP_001476637.1 )

integrase family protein

NC_009832
(Serratia proteamaculans 568)

6e-64

44) KPHS_44700
( YP_005228770.1 )

Phage integrase

NC_016845
(Klebsiella pneumoniae HS11286)

1e-63

45) N559_0834
( YP_008423904.1 )

site-specific recombinase, phage integrase family

NC_022082
(Klebsiella pneumoniae JM45)

3e-63

46) ECA0614
( YP_048731.1 )

phage integrase

NC_004547
(Pectobacterium atrosepticum SCRI1043)

6e-63

47) EcE24377A_3356
( YP_001464358.1 )

phage integrase

NC_009801
(Escherichia coli E24377A)

1e-57

48) SeAg_B4797
( YP_002149427.1 )

phage integrase

NC_011149
(Salmonella enterica SL483)

2e-56

49) SARI_03154
( YP_001572136.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

1e-55

50) PMI2549
( YP_002152268.1 )

phage integrase

NC_010554
(Proteus mirabilis HI4320)

3e-55

51) EC55989_4899
( YP_002405756.1 )

hypothetical protein

NC_011748
(Escherichia coli 55989)

4e-55

52) O3M_22185
( YP_006772051.1 )

hypothetical protein

NC_018650
(Escherichia coli 2009EL-2050)

4e-55

53) O3O_03105
( YP_006786239.1 )

hypothetical protein

NC_018661
(Escherichia coli 2009EL-2071)

4e-55

54) O3K_22290
( YP_006781115.1 )

hypothetical protein

NC_018658
(Escherichia coli 2011C-3493)

4e-55

55) ECSF_4158
( YP_003352148.1 )

putative phage integrase

NC_013654
(Escherichia coli SE15)

1e-54

56) ST548_p5001
( YP_007389597.1 )

FIG00638672: hypothetical protein

NC_020181
(Enterobacter aerogenes EA1509E)

4e-54

• Sequence Alignments

1) YpsIP31758_3686 in NC_009708


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  526 bits (1986),  Expect = 4e-151, Method: Compositional matrix adjust.
 Identities = 321/322 (99%), Positives = 322/322 (100%), Gaps = 0/322 (0%)

Query  1    MNQANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVL  60
            MN+ANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVL
Sbjct  5    MNKANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVL  64

Query  61   NKQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKI  120
            NKQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKI
Sbjct  65   NKQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKI  124

Query  121  YLIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGW  180
            YLIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGW
Sbjct  125  YLIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGW  184

Query  181  INLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTEN  240
            INLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTEN
Sbjct  185  INLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTEN  244

Query  241  MDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEY  300
            MDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEY
Sbjct  245  MDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEY  304

Query  301  VEGDIDSLRLALEETFERKEVF  322
            VEGDIDSLRLALEETFERKEVF
Sbjct  305  VEGDIDSLRLALEETFERKEVF  326

2) YE3450 in NC_008800


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  508 bits (1915),  Expect = 2e-145, Method: Compositional matrix adjust.
 Identities = 303/326 (93%), Positives = 317/326 (98%), Gaps = 0/326 (0%)

Query  1    MEMEMNQVNYDDILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRQIVLNWR  60
            ME+EMN+ NYD+ILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDR  VLNWR
Sbjct  1    MEIEMNKANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWR  60

Query  61   RHVLNKQGLSSITWNNKVAHMRAIFNHALLYDLVVLKHNPFNGVIVRPDVKRKKTLTQSE  120
            RHVLNKQGLSSITWNNKVAHMRAIFNHALL DLV +K+NPFNGVIVRPDVKRKKTLTQSE
Sbjct  61   RHVLNKQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSE  120

Query  121  IEKIYLIMEAREREEHVGIMDKSRSALRPAWFWLTVVDILRYTGMRQNQLLHIRLGDVNL  180
            I KIYLIMEAREREEHVGIM+KSRSALRPAWFWLTVVD LRYTGMRQNQLLHIRLGDVNL
Sbjct  121  IKKIYLIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNL  180

Query  181  NDGWINLRSEASKNHKEHRVPIARVLRPRLERLVAAAIDKGANQADQLFNISRFDGRKES  240
            NDGWINLR+EASKNHKEHR+PIARVLRPRLERLVA+AI+KGANQ DQLFNISR+DGRKE+
Sbjct  181  NDGWINLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKET  240

Query  241  ITENMDNPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAV  300
            +TENMD+PPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAV
Sbjct  241  VTENMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAV  300

Query  301  TLEYVEGDIDSLRLALEETFERKAVF  326
            TLEYVEGDIDSLRLALEETFERK VF
Sbjct  301  TLEYVEGDIDSLRLALEETFERKEVF  326

3) Ser39006_1551 in NC_022268


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  432 bits (1626),  Expect = 1e-122, Method: Compositional matrix adjust.
 Identities = 238/320 (75%), Positives = 289/320 (91%), Gaps = 0/320 (0%)

Query  1    MDLINYDDILQDYFFSKVLRPATELSYRKVVNSFRRYTEDKVLPGQVNRLTVLNWRRYIL  60
            M+  NYD+ILQDYFFSK LRPATE SYRKV+NSFRRY  D++LPG+V+RLTVLNWRR +L
Sbjct  5    MNKANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVL  64

Query  61   NEQCLSSITWNNKVAHMRAIYNHVLQQQIIPLKDNPFNGVVVRPDIKRKKTLTESEIKKI  120
            N Q LSSITWNNKVAHMRAI+NH L ++++++K+NPFNGV+VRPD+KRKKTLT+SEIKKI
Sbjct  65   NKQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKI  124

Query  121  YLLLEAREKEEGLGITEKIRSALRPAWYWLSVVDTLRYTGMRQNQLLNIRLEDVQLEEGW  180
            YL++EARE+EE +GI  K RSALRPAW+WL+VVDTLRYTGMRQNQLL+IRL DV+L++GW
Sbjct  125  YLIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGW  184

Query  181  INLRSEASKNHREHRVPITRLLRPRLERLIMVATERGATHSDMLFNASRFDGRKNMLTDV  240
            INLR+EASKNH+EHR+PI+R+LRPRLERL+  A E+GA + D LFN SR+DGRK+ +T+ 
Sbjct  185  INLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTEN  244

Query  241  MAYQPLRAFFRRLSKECQCTITPHRFRHTIATDMMKSPDRNLKVVQTLLGHSSVAVTLEY  300
            M   PLR+FFRRLS EC+CTI+PHRFRHTIAT+MMKSPDRNLKVVQTLLGHSS+AVTLEY
Sbjct  245  MDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEY  304

Query  301  VEGNMDSLRLALDEVFDRQG  320
            VEG++DSLRLAL+E F+R+ 
Sbjct  305  VEGDIDSLRLALEETFERKE  324

4) W5S_3422 in NC_017845


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  397 bits (1492),  Expect = 5e-112, Method: Compositional matrix adjust.
 Identities = 224/318 (71%), Positives = 276/318 (87%), Gaps = 2/318 (0%)

Query  3    VTYEDIIQDYFFSKPLRPATEISYRKVLNLFLRFTGEKILPADVDRHTVLSWRRHLLNER  62
              Y++I+QDYFFSK+LRPATE SYRKV+N F R+ G+++LP++VDR TVL+WRRH+LN +
Sbjct  8    ANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQ  67

Query  63   QLSTITWNNRVAHMRAIFNHAMKYDFVKMKENPFNSVVARPDVKRKKTLSEEQIRKIYLV  122
             LS+ITWNN+VAHMRAIFNHA+  D+V  K+NPFN+V+ RPDVKRKKTL++ +I+KIYL+
Sbjct  68   GLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLI  127

Query  123  MEAREEKEFEDC--DFRSALRPAWFWLTVIDTLRYTGMRQNQLLHIRLEDVNLDEGWINL  180
            MEARE  E  +     RSALRPAWFWLTV+DTLRYTGMRQNQLLHIRL DVNL++GWINL
Sbjct  128  MEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINL  187

Query  181  RPEASKNHKEHIVPITTLLRPRLERLYHAALNQDANMGDQLFNVHLFKGRKSNVSKNMDP  240
            RPEASKNHKEH +PI+ +LRPRLERL  +A++++AN  DQLFN+  + GRK  V+ NMD+
Sbjct  188  RPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDS  247

Query  241  PPMRAFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKIVQTLLGHSNVSVTLEYVEG  300
            PP+R+FFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLK+VQTLLGHS+++VTLEYVEG
Sbjct  248  PPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEG  307

Query  301  NMDIVRNALEQEFSRKSV  318
            ++D +R ALE+ F RK V
Sbjct  308  DIDSLRLALEETFERKEV  325

5) Pecwa_0710 in NC_013421


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  396 bits (1489),  Expect = 7e-112, Method: Compositional matrix adjust.
 Identities = 223/318 (71%), Positives = 276/318 (87%), Gaps = 2/318 (0%)

Query  3    VTYEDIIQDYFFSKPLRPATEISYKKVLNLFLRFTGEKVLPADVDRHTVLSWRRHLLNER  62
              Y++I+QDYFFSK+LRPATE SY+KV+N F R+ G+++LP++VDR TVL+WRRH+LN +
Sbjct  8    ANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQ  67

Query  63   QLSTITWNNRVAHMRAIFNHAMKYDFVQMKENPFNSVVARPDVKRKKTLSEEQIRKIYLV  122
             LS+ITWNN+VAHMRAIFNHA+  D+V  K+NPFN+V+ RPDVKRKKTL++ +I+KIYL+
Sbjct  68   GLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLI  127

Query  123  MEAREEKEFEDC--DFRSALRPAWFWLTVIDTLRYTGMRQNQLLHIRLEDVNLDEGWINL  180
            MEARE  E  +     RSALRPAWFWLTV+DTLRYTGMRQNQLLHIRL DVNL++GWINL
Sbjct  128  MEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINL  187

Query  181  RPEASKNHKEHIVPITTLLRPRLERLYHAALNQDANMGDQLFNVHLFKGRKSNVSKNMDP  240
            RPEASKNHKEH +PI+ +LRPRLERL  +A++++AN  DQLFN+  + GRK  V+ NMD+
Sbjct  188  RPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDS  247

Query  241  PPMRAFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKIVQTLLGHSNVSVTLEYVEG  300
            PP+R+FFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLK+VQTLLGHS+++VTLEYVEG
Sbjct  248  PPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEG  307

Query  301  NMDIVRNALEQEFSRKSV  318
            ++D +R ALE+ F RK V
Sbjct  308  DIDSLRLALEETFERKEV  325

6) EPYR_00494 in NC_017390


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  369 bits (1387),  Expect = 9e-104, Method: Compositional matrix adjust.
 Identities = 200/310 (65%), Positives = 261/310 (85%), Gaps = 0/310 (0%)

Query  6    TFDDVLIDYFFSKSLRPATEWSYRKVVKSFISFTGNEVVPEEVDKKLVLQWRRKVIIEDG  65
             +D++L DYFFSKSLRPATEWSYRKV++SF  + G++++P EVD+  VL+WRR V+  +G
Sbjct  9    NYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQG  68

Query  66   LTKITWNNKLTHMRAIFNHAITQGHISQRENPFNGTVVRPDVKRKKTLNDAQIKKIYLLM  125
            L+ ITWNNK++HMRAIFNHA+ ++ +S ++NPFNG +VRPDVKRKKTL +++IKKIYL+M
Sbjct  69   LSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIM  128

Query  126  EAREAEERTGRVGACKNALRPAWFWMTVVDILRRTGMRQNQLLHIRLCDVNFEHNWISLR  185
            EARE EE+ G +G  ++ALRPAWFW+TVVD LR TGMRQNQLLHIRL DVN+++ WI+LR
Sbjct  129  EAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLR  188

Query  186  PEGAKNHREHRVPITTHLRPRLERLYDQSVGRGAKMADQLFNISRFDGRRKETSENMDHP  245
            PE++KNH+EHR+PI+  LRPRLERL   ++ +GA+  DQLFNISR+DGR+   +ENMD P
Sbjct  189  PEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDSP  248

Query  246  PLRAFFRRLSNECGFVVSPHRFRHTIATNLMSLPDRNLKMAQDLLGHSTPAVTLQYVESD  305
            PLR+FFRRLS EC   +SPHRFRHTIAT++M  PDRNLK+ Q LLGHS+ AVTL+YVE+D
Sbjct  249  PLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGD  308

Query  306  IEKVRFVLEQ  315
            I+ +R+ LE+
Sbjct  309  IDSLRLALEE  318

7) EPYR_03243 in NC_017390


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  369 bits (1387),  Expect = 9e-104, Method: Compositional matrix adjust.
 Identities = 200/310 (65%), Positives = 261/310 (85%), Gaps = 0/310 (0%)

Query  6    TFDDVLIDYFFSKSLRPATEWSYRKVVKSFISFTGNEVVPEEVDKKLVLQWRRKVIIEDG  65
             +D++L DYFFSKSLRPATEWSYRKV++SF  + G++++P EVD+  VL+WRR V+  +G
Sbjct  9    NYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQG  68

Query  66   LTKITWNNKLTHMRAIFNHAITQGHISQRENPFNGTVVRPDVKRKKTLNDAQIKKIYLLM  125
            L+ ITWNNK++HMRAIFNHA+ ++ +S ++NPFNG +VRPDVKRKKTL +++IKKIYL+M
Sbjct  69   LSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIM  128

Query  126  EAREAEERTGRVGACKNALRPAWFWMTVVDILRRTGMRQNQLLHIRLCDVNFEHNWISLR  185
            EARE EE+ G +G  ++ALRPAWFW+TVVD LR TGMRQNQLLHIRL DVN+++ WI+LR
Sbjct  129  EAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLR  188

Query  186  PEGAKNHREHRVPITTHLRPRLERLYDQSVGRGAKMADQLFNISRFDGRRKETSENMDHP  245
            PE++KNH+EHR+PI+  LRPRLERL   ++ +GA+  DQLFNISR+DGR+   +ENMD P
Sbjct  189  PEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDSP  248

Query  246  PLRAFFRRLSNECGFVVSPHRFRHTIATNLMSLPDRNLKMAQDLLGHSTPAVTLQYVESD  305
            PLR+FFRRLS EC   +SPHRFRHTIAT++M  PDRNLK+ Q LLGHS+ AVTL+YVE+D
Sbjct  249  PLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGD  308

Query  306  IEKVRFVLEQ  315
            I+ +R+ LE+
Sbjct  309  IDSLRLALEE  318

8) EpC_04710 in NC_012214


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  369 bits (1387),  Expect = 9e-104, Method: Compositional matrix adjust.
 Identities = 200/310 (65%), Positives = 261/310 (85%), Gaps = 0/310 (0%)

Query  6    TFDDVLIDYFFSKSLRPATEWSYRKVVKSFISFTGNEVVPEEVDKKLVLQWRRKVIIEDG  65
             +D++L DYFFSKSLRPATEWSYRKV++SF  + G++++P EVD+  VL+WRR V+  +G
Sbjct  9    NYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQG  68

Query  66   LTKITWNNKLTHMRAIFNHAITQGHISQRENPFNGTVVRPDVKRKKTLNDAQIKKIYLLM  125
            L+ ITWNNK++HMRAIFNHA+ ++ +S ++NPFNG +VRPDVKRKKTL +++IKKIYL+M
Sbjct  69   LSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIM  128

Query  126  EAREAEERTGRVGACKNALRPAWFWMTVVDILRRTGMRQNQLLHIRLCDVNFEHNWISLR  185
            EARE EE+ G +G  ++ALRPAWFW+TVVD LR TGMRQNQLLHIRL DVN+++ WI+LR
Sbjct  129  EAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLR  188

Query  186  PEGAKNHREHRVPITTHLRPRLERLYDQSVGRGAKMADQLFNISRFDGRRKETSENMDHP  245
            PE++KNH+EHR+PI+  LRPRLERL   ++ +GA+  DQLFNISR+DGR+   +ENMD P
Sbjct  189  PEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDSP  248

Query  246  PLRAFFRRLSNECGFVVSPHRFRHTIATNLMSLPDRNLKMAQDLLGHSTPAVTLQYVESD  305
            PLR+FFRRLS EC   +SPHRFRHTIAT++M  PDRNLK+ Q LLGHS+ AVTL+YVE+D
Sbjct  249  PLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGD  308

Query  306  IEKVRFVLEQ  315
            I+ +R+ LE+
Sbjct  309  IDSLRLALEE  318

9) EpC_30050 in NC_012214


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  369 bits (1387),  Expect = 9e-104, Method: Compositional matrix adjust.
 Identities = 200/310 (65%), Positives = 261/310 (85%), Gaps = 0/310 (0%)

Query  6    TFDDVLIDYFFSKSLRPATEWSYRKVVKSFISFTGNEVVPEEVDKKLVLQWRRKVIIEDG  65
             +D++L DYFFSKSLRPATEWSYRKV++SF  + G++++P EVD+  VL+WRR V+  +G
Sbjct  9    NYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQG  68

Query  66   LTKITWNNKLTHMRAIFNHAITQGHISQRENPFNGTVVRPDVKRKKTLNDAQIKKIYLLM  125
            L+ ITWNNK++HMRAIFNHA+ ++ +S ++NPFNG +VRPDVKRKKTL +++IKKIYL+M
Sbjct  69   LSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIM  128

Query  126  EAREAEERTGRVGACKNALRPAWFWMTVVDILRRTGMRQNQLLHIRLCDVNFEHNWISLR  185
            EARE EE+ G +G  ++ALRPAWFW+TVVD LR TGMRQNQLLHIRL DVN+++ WI+LR
Sbjct  129  EAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLR  188

Query  186  PEGAKNHREHRVPITTHLRPRLERLYDQSVGRGAKMADQLFNISRFDGRRKETSENMDHP  245
            PE++KNH+EHR+PI+  LRPRLERL   ++ +GA+  DQLFNISR+DGR+   +ENMD P
Sbjct  189  PEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDSP  248

Query  246  PLRAFFRRLSNECGFVVSPHRFRHTIATNLMSLPDRNLKMAQDLLGHSTPAVTLQYVESD  305
            PLR+FFRRLS EC   +SPHRFRHTIAT++M  PDRNLK+ Q LLGHS+ AVTL+YVE+D
Sbjct  249  PLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGD  308

Query  306  IEKVRFVLEQ  315
            I+ +R+ LE+
Sbjct  309  IDSLRLALEE  318

10) SPAB_05449 in NC_010102


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  367 bits (1381),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 205/312 (66%), Positives = 263/312 (85%), Gaps = 0/312 (0%)

Query  2    NNAFEEVLDDYFFSKSLRPATEWSYRKVVRSFISFSGKGISPEQVDKTLVLTWRRKIIHE  61
            +  ++E+L+DYFFSKSLRPATEWSYRKV+ SF  + G  + P +VD+  VL WRR +++ 
Sbjct  7    KANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNK  66

Query  62   EGLSRTTWNNKVTHMRAIFNHAIVNGLVTMRENPFNGVITRPDVKRKKTLTDVQMNKIYL  121
            +GLS  TWNNKV+HMRAIFNHA++++LV+ ++NPFNGVI RPDVKRKKTLT+ +++KIYL
Sbjct  67   QGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYL  126

Query  122  HMLAREEDERIGMMELRKSALRPAWFWLTVLDALRRTGMRQNQLLHIRLEDVNFEHRWIN  181
             M ARE +E++G+M   +SALRPAWFWLTV+D+LR TGMRQNQLLHIRL DVN+++ WIN
Sbjct  127  IMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWIN  186

Query  182  LRPEGSKNHKEHRVPITENLRPRLERLYNLSLERGAKMQDQLFNLSRFDGRKNEISSNMD  241
            LRPE+SKNHKEHR+PI+  LRPRLERL   ++E+GA+  DQLFN+SR+DGRK+ ++ NMD
Sbjct  187  LRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMD  246

Query  242  YPPLRAFFRRLSRECGFTVSPHRFRHTIATNLMRLPDRNLKMAQDLLGHSTPAVTLEYVE  301
             PPLR+FFRRLS EC  T+SPHRFRHTIAT++M+ PDRNLK+ Q LLGHS+ AVTLEYVE
Sbjct  247  SPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVE  306

Query  302  SDLDKVRDMLEE  313
            +D+D +R  LEE
Sbjct  307  GDIDSLRLALEE  318

11) EJP617_06960 in NC_017445


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  364 bits (1367),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 197/313 (63%), Positives = 259/313 (83%), Gaps = 0/313 (0%)

Query  6    TFDDVLIDYFFSKVLRPATEWSYRKVVKTFIEFSEDDTLPGNVTRLDVLKWRRHVLTEQG  65
             +D++L DYFFSK LRPATEWSYRKV+++F  +  D+ LPG+V RL VL+WRRHVL  QG
Sbjct  9    NYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQG  68

Query  66   SCKRTWNNKVAHMRAIFNHAIKYQLIANGDNPFRLVVVKPDIKCKKTLTDEQIKKVYLVM  125
                TWNNKVAHMRAIFNHA+  +L++  +NPF  V+V+PD+K KKTLT+ +IKK+YL+M
Sbjct  69   LSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIM  128

Query  126  ERKIMEEKLGIEDSRPNALKPAWFWMTVIDTLRYTGMRQNQLLHIRLCDVDLKEGVINLR  185
            E +  EE +GI +   +AL+PAWFW+TV+DTLRYTGMRQNQLLHIRL DV+L++G INLR
Sbjct  129  EAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLR  188

Query  186  PEGSKNHREHRVPVTDRLRARLEHLYFAAADKGAKPEDQLFNINRFSFKKNVLSNNMDHP  245
            PE+SKNH+EHR+P++  LR+RLE+L  +A +KGA+  DQLFNI+R+  +K+ +++NMD P
Sbjct  189  PEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDSP  248

Query  246  PMRAFFRRLSKECGCVISPHRFRHTIATDLMKRPERSLNDVQMLLGHSSLAVTLEYVEAN  305
            P+R+FFRRLS EC C ISPHRFRHTIAT++MK P+R+L+ VQ LLGHSS+AVTLEYVE++
Sbjct  249  PLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGD  308

Query  306  IDNLRRNLDEAFA  318
            ID+LR  L+E+F 
Sbjct  309  IDSLRLALEETFE  321

12) PAJ_2539 in NC_017531


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  355 bits (1332),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 195/313 (63%), Positives = 258/313 (83%), Gaps = 0/313 (0%)

Query  3    DNITFDDLLNDYFFSKSLREATEWSYRKVVKTFVQFAGPDIVPEKVTNHMVLTWRRKVIA  62
            ++  +D++L+DYFFSKSLR ATEWSYRKV+++F ++ G +++P  V    VL WRR V+ 
Sbjct  6    NKANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLN  65

Query  63   DEKLSKITWNNKLTHMRAIFNFAIHKGYISPRENPFNGAIARPDVKRKKTLTDAQIKKIY  122
             + LS ITWNNK++HMRAIFN A+  + +S ++NPFNG I RPDVKRKKTLT+++IKKIY
Sbjct  66   KQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIY  125

Query  123  LIMEAREQDEFFGVGQVRKNALRPCWFWLTVLDALRRTGMRQNQLLHIRLCDVNLTHNWI  182
            LIMEARE++E  G+    ++ALRP WFWLTV+D+LR TGMRQNQLLHIRL DVNL + WI
Sbjct  126  LIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWI  185

Query  183  SLRPEGAKNHREHRVPVTSQLRPRLERLYNLSLERGAKMEDQLFNLSRFDGRRNEVSENM  242
            +LRPE++KNH+EHR+P++  LRPRLERL   ++E+GA+  DQLFN+SR+DGR++ V+ENM
Sbjct  186  NLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENM  245

Query  243  DNPPLRAFFRRLSKECGFVVSPHRFRHTIATNLMKLPDRNLKMAQDLLGHSTPTVTLQYV  302
            D+PPLR+FFRRLS EC   +SPHRFRHTIAT++MK PDRNLK+ Q LLGHS+ +VTL+YV
Sbjct  246  DSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYV  305

Query  303  ESDIERVRSVIEE  315
            E+DI+ +R  +EE
Sbjct  306  EGDIDSLRLALEE  318

13) PAGR_g3784 in NC_017554


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  352 bits (1322),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 189/317 (60%), Positives = 258/317 (82%), Gaps = 2/317 (0%)

Query  3    EKTTFDDILNDYFFSKVLRPASEWSYRKVVKTFTEFSEGKILPESICRLDVLKWRRHVLN  62
            +K+ +D+IL+DYFFSK LRPA+EWSYRKV+++F  +  +++LP  + RL VL+WRRHVLN
Sbjct  6    NKANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLN  65

Query  63   EQNCSKRTWNNKVAHMRALFNHAITHSLITARDNPFNGVVVKPDRKRKKTLTREQMKKID  122
             Q  S  TWNNKVAHMRA+FNHA+ H L++ ++NPFNGV+V+PD KRKKTLT+ ++KKI 
Sbjct  66   KQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIY  125

Query  123  LVMHRKIEQEQIGIHDPRPNALEPAWFWMTVIETLKFTGMRQNQLLHIRLCDVDLKQGVI  182
            L+M+ +  +E++GI +   +AL PAWFW+TV++TL++TGMRQNQLLHIRL DV+L++G I
Sbjct  126  LIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWI  185

Query  183  ELRPEGSKNHREHRVPVTDKLRPRLEDLYRQAKQMGARPKDQLFNINRFSRLKKKNVMGG  242
            +LRPE+SKNH+EHR+P++  LRPRLE L   A + GA   DQLFNI+R+    +K+ +  
Sbjct  186  NLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRID--GRKETVTE  243

Query  243  NMDHPPMRAFFRRLSRECQCDVSPHRFRHTIATDLMKTPERSLNDVKMLLGHSSVAVTLE  302
            NMD PP+R+FFRRLS EC+C +SPHRFRHTIAT++MK+P+R+L+ V+ LLGHSS+AVTLE
Sbjct  244  NMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLE  303

Query  303  YVEANMDHLRRNLESVF  319
            YVE+++D LR  LE  F
Sbjct  304  YVEGDIDSLRLALEETF  320

14) xerC1 in NC_016816


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  352 bits (1322),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 189/317 (60%), Positives = 258/317 (82%), Gaps = 2/317 (0%)

Query  3    EKTTFDDILNDYFFSKVLRPASEWSYRKVVKTFTEFSEGKILPESICRLDVLKWRRHVLN  62
            +K+ +D+IL+DYFFSK LRPA+EWSYRKV+++F  +  +++LP  + RL VL+WRRHVLN
Sbjct  6    NKANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLN  65

Query  63   EQNCSKRTWNNKVAHMRALFNHAITHSLITARDNPFNGVVVKPDRKRKKTLTREQMKKID  122
             Q  S  TWNNKVAHMRA+FNHA+ H L++ ++NPFNGV+V+PD KRKKTLT+ ++KKI 
Sbjct  66   KQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIY  125

Query  123  LVMHRKIEQEQIGIHDPRPNALEPAWFWMTVIETLKFTGMRQNQLLHIRLCDVDLKQGVI  182
            L+M+ +  +E++GI +   +AL PAWFW+TV++TL++TGMRQNQLLHIRL DV+L++G I
Sbjct  126  LIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWI  185

Query  183  ELRPEGSKNHREHRVPVTDKLRPRLEDLYRQAKQMGARPKDQLFNINRFSRLKKKNVMGG  242
            +LRPE+SKNH+EHR+P++  LRPRLE L   A + GA   DQLFNI+R+    +K+ +  
Sbjct  186  NLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRID--GRKETVTE  243

Query  243  NMDHPPMRAFFRRLSRECQCDVSPHRFRHTIATDLMKTPERSLNDVKMLLGHSSVAVTLE  302
            NMD PP+R+FFRRLS EC+C +SPHRFRHTIAT++MK+P+R+L+ V+ LLGHSS+AVTLE
Sbjct  244  NMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLE  303

Query  303  YVEANMDHLRRNLESVF  319
            YVE+++D LR  LE  F
Sbjct  304  YVEGDIDSLRLALEETF  320

15) ECL_00532 in NC_014121


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  339 bits (1271),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 183/316 (58%), Positives = 255/316 (81%), Gaps = 2/316 (0%)

Query  5    VTFEKILDDYFFNKVLRRATEWSYRKVVRTFLEFYGEDILPENVTRMDVLKWRRYVLNEQ  64
              ++ IL+DYFF+K LR ATEWSYRKV+ +F  + G+++LP +V R+ VL+WRR VLN Q
Sbjct  8    ANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQ  67

Query  65   MSSKRTWNNKVAHMRAVFNHAITNKLISARENPFNQVIVKPDIKRKKTLSGEQMKKIDLI  124
              S  TWNNKVAHMRA+FNHA+ + L+S ++NPFN VIV+PD+KRKKTL+  ++KKI LI
Sbjct  68   GLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLI  127

Query  125  MERKIELEQMGVHDPRPNALEPAWFWMTVIETLKFTGMRQNQLLHIRLCDVDLKLGIIEL  184
            ME +   E++G+ +   +AL PAWFW+TV++TL++TGMRQNQLLHIRL DV+L+ G I+L
Sbjct  128  MEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINL  187

Query  185  QAEGSKNHREHRVPITARLRPRLEQLYLMSVQKGSKKGEQLFNINRFTPKKKRIIRAKNM  244
            ++E+SKNH+EHR+PI+  LRPRLE+L   +++KG+++ +QLFNI+R+  +K  +  + NM
Sbjct  188  RPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETV--TENM  245

Query  245  DHLPMRAFFRRLSRECQCDISPHRFRHTIATDLMKRPERSLNDVQMLLGHSSVAVTLEYV  304
            D  P+R+FFRRLS EC+C ISPHRFRHTIAT++MK P+R+L+ VQ LLGHSS+AVTLEYV
Sbjct  246  DSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYV  305

Query  305  EANMDNLRRNLEAAYA  320
            E+++D+LR  LE ++ 
Sbjct  306  EGDIDSLRLALEETFE  321

16) EAM_2852 in NC_013971


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  310 bits (1162),  Expect = 5e-86, Method: Compositional matrix adjust.
 Identities = 173/275 (63%), Positives = 224/275 (82%), Gaps = 1/275 (0%)

Query  1    LPGHVTRLDVLKWRRHVLTEQGSCKRTWNNKVAHMRAIFNHAIKYQLIATVITPF-GVVV  59
            LPG+V RL VL+WRRHVL  QG    TWNNKVAHMRAIFNHA+  +L++    PF GV+V
Sbjct  47   LPGEVDRLTVLNWRRHVLNKQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIV  106

Query  60   KPDIKRKKTLTDEQIKKVYLVMEREIMEEKLGIEDSRPNALKPAWFWMTVIDTLRYSGMR  119
            +PD+KRKKTLT+ +IKK+YL+ME    EE +GI +   +AL+PAWFW+TV+DTLRY+GMR
Sbjct  107  RPDVKRKKTLTQSEIKKIYLIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMR  166

Query  120  QNQLLHIRLCDVDLKEGVINLRPEGSKNHREHRVPVTDRLRARLEHLYFVAADKGAKPED  179
            QNQLLHIRL DV+L++G INLRPE+SKNH+EHR+P++  LR+RLE+L   A +KGA+  D
Sbjct  167  QNQLLHIRLGDVNLNDGWINLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVD  226

Query  180  QLFNINRFSFKKSVLSNNMDHPPMRAFFRRLSKECGCVISPHRFRHTIATDLMKRPERSL  239
            QLFNI+R+  +K  +++NMD PP+R+FFRRLS EC C ISPHRFRHTIAT++MK P+R+L
Sbjct  227  QLFNISRIDGRKETVTENMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNL  286

Query  240  NDVQMLPGHSSLAVTLEYVEANIDNLRRNLDAAFA  274
            + VQ L GHSS+AVTLEYVE++ID+LR  L+ +F 
Sbjct  287  KVVQTLLGHSSIAVTLEYVEGDIDSLRLALEETFE  321

17) STY4666 in NC_003198


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  296 bits (1107),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 170/311 (55%), Positives = 233/311 (75%), Gaps = 1/311 (0%)

Query  8    QQLIDEYFFAKPLRSASEWSYTKVFKSFVHYMGPLSCPNDVTYHKVLAWRRFLLKEKKLS  67
            ++++++YFF+K+LR+A+EWSY KV++SF +Y+G    P +V    VL WRR +L+ + LS
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  68   GRTWNNKVAHMRAIFNYGIQRGLLHYDENPFNNSVVKPDKKRKKTLTQAQIEYAYQIMEQ  127
            + TWNNKVAHMRAIFN ++ ++L+ + +NPFN  +V+PD KRKKTLTQ++I   Y IME 
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEA  130

Query  128  YENQENTGLGLKYSRCALFPAWFWLTVLDTLYYTGIRQNQLLHIRLNDVDLREGQIRLIT  187
             E +E+ G+  K SR AL PAWFWLTV+DTL YTG+RQNQLLHIRL DV+L +G I L  
Sbjct  131  REREEHVGIMGK-SRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLRP  189

Query  188  EGCKNHKEHYVPVISFLRPRLTCLMEKAQSEGLKGNDRLFNIALFTGKDPAIGDDMDSPQ  247
            E+ KNHKEH +P+   LRPRL  L+  A   G +  D+LFNI+ + G+  ++ ++MDSP 
Sbjct  190  EASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDSPP  249

Query  248  VRAFFRRLSKECQFAISPHRFRHTLATEMMKMPEQNLHMAQSVLGHSNMKSTLEYVENDI  307
            +R+FFRRLS EC+ +ISPHRFRHT+ATEMMK P++NL + Q++LGHS++  TLEYVE DI
Sbjct  250  LRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDI  309

Query  308  AVMGRALEAQF  318
              +  ALE  F
Sbjct  310  DSLRLALEETF  320

18) STBHUCCB_46130 in NC_016832


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  296 bits (1107),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 170/311 (55%), Positives = 233/311 (75%), Gaps = 1/311 (0%)

Query  8    QQLIDEYFFAKPLRSASEWSYTKVFKSFVHYMGPLSCPNDVTYHKVLAWRRFLLKEKKLS  67
            ++++++YFF+K+LR+A+EWSY KV++SF +Y+G    P +V    VL WRR +L+ + LS
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  68   GRTWNNKVAHMRAIFNYGIQRGLLHYDENPFNNSVVKPDKKRKKTLTQAQIEYAYQIMEQ  127
            + TWNNKVAHMRAIFN ++ ++L+ + +NPFN  +V+PD KRKKTLTQ++I   Y IME 
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEA  130

Query  128  YENQENTGLGLKYSRCALFPAWFWLTVLDTLYYTGIRQNQLLHIRLNDVDLREGQIRLIT  187
             E +E+ G+  K SR AL PAWFWLTV+DTL YTG+RQNQLLHIRL DV+L +G I L  
Sbjct  131  REREEHVGIMGK-SRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLRP  189

Query  188  EGCKNHKEHYVPVISFLRPRLTCLMEKAQSEGLKGNDRLFNIALFTGKDPAIGDDMDSPQ  247
            E+ KNHKEH +P+   LRPRL  L+  A   G +  D+LFNI+ + G+  ++ ++MDSP 
Sbjct  190  EASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDSPP  249

Query  248  VRAFFRRLSKECQFAISPHRFRHTLATEMMKMPEQNLHMAQSVLGHSNMKSTLEYVENDI  307
            +R+FFRRLS EC+ +ISPHRFRHT+ATEMMK P++NL + Q++LGHS++  TLEYVE DI
Sbjct  250  LRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDI  309

Query  308  AVMGRALEAQF  318
              +  ALE  F
Sbjct  310  DSLRLALEETF  320

19) TY21A_22190 in NC_021176


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  296 bits (1107),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 170/311 (55%), Positives = 233/311 (75%), Gaps = 1/311 (0%)

Query  8    QQLIDEYFFAKPLRSASEWSYTKVFKSFVHYMGPLSCPNDVTYHKVLAWRRFLLKEKKLS  67
            ++++++YFF+K+LR+A+EWSY KV++SF +Y+G    P +V    VL WRR +L+ + LS
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  68   GRTWNNKVAHMRAIFNYGIQRGLLHYDENPFNNSVVKPDKKRKKTLTQAQIEYAYQIMEQ  127
            + TWNNKVAHMRAIFN ++ ++L+ + +NPFN  +V+PD KRKKTLTQ++I   Y IME 
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEA  130

Query  128  YENQENTGLGLKYSRCALFPAWFWLTVLDTLYYTGIRQNQLLHIRLNDVDLREGQIRLIT  187
             E +E+ G+  K SR AL PAWFWLTV+DTL YTG+RQNQLLHIRL DV+L +G I L  
Sbjct  131  REREEHVGIMGK-SRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLRP  189

Query  188  EGCKNHKEHYVPVISFLRPRLTCLMEKAQSEGLKGNDRLFNIALFTGKDPAIGDDMDSPQ  247
            E+ KNHKEH +P+   LRPRL  L+  A   G +  D+LFNI+ + G+  ++ ++MDSP 
Sbjct  190  EASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDSPP  249

Query  248  VRAFFRRLSKECQFAISPHRFRHTLATEMMKMPEQNLHMAQSVLGHSNMKSTLEYVENDI  307
            +R+FFRRLS EC+ +ISPHRFRHT+ATEMMK P++NL + Q++LGHS++  TLEYVE DI
Sbjct  250  LRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDI  309

Query  308  AVMGRALEAQF  318
              +  ALE  F
Sbjct  310  DSLRLALEETF  320

20) t4357 in NC_004631


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  296 bits (1107),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 170/311 (55%), Positives = 233/311 (75%), Gaps = 1/311 (0%)

Query  8    QQLIDEYFFAKPLRSASEWSYTKVFKSFVHYMGPLSCPNDVTYHKVLAWRRFLLKEKKLS  67
            ++++++YFF+K+LR+A+EWSY KV++SF +Y+G    P +V    VL WRR +L+ + LS
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  68   GRTWNNKVAHMRAIFNYGIQRGLLHYDENPFNNSVVKPDKKRKKTLTQAQIEYAYQIMEQ  127
            + TWNNKVAHMRAIFN ++ ++L+ + +NPFN  +V+PD KRKKTLTQ++I   Y IME 
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEA  130

Query  128  YENQENTGLGLKYSRCALFPAWFWLTVLDTLYYTGIRQNQLLHIRLNDVDLREGQIRLIT  187
             E +E+ G+  K SR AL PAWFWLTV+DTL YTG+RQNQLLHIRL DV+L +G I L  
Sbjct  131  REREEHVGIMGK-SRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLRP  189

Query  188  EGCKNHKEHYVPVISFLRPRLTCLMEKAQSEGLKGNDRLFNIALFTGKDPAIGDDMDSPQ  247
            E+ KNHKEH +P+   LRPRL  L+  A   G +  D+LFNI+ + G+  ++ ++MDSP 
Sbjct  190  EASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDSPP  249

Query  248  VRAFFRRLSKECQFAISPHRFRHTLATEMMKMPEQNLHMAQSVLGHSNMKSTLEYVENDI  307
            +R+FFRRLS EC+ +ISPHRFRHT+ATEMMK P++NL + Q++LGHS++  TLEYVE DI
Sbjct  250  LRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDI  309

Query  308  AVMGRALEAQF  318
              +  ALE  F
Sbjct  310  DSLRLALEETF  320

21) Y11_23521 in NC_017564


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  291 bits (1091),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 172/318 (55%), Positives = 235/318 (74%), Gaps = 7/318 (2%)

Query  1    MSHITFELLLDKYFFSKSLRPTTEWSYQKVVNSFEQYTPK--LPHEINDQIVLEWRRYVL  58
            M+   ++ +L+ YFFSKSLRP+TEWSY+KV+NSF +Y     LP E++   VL+WRR VL
Sbjct  5    MNKANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVL  64

Query  59   NDLRLEPRTWNNKVAHLRALFNFGMKKKLLKHEENPFNGSVVRAGIKKKKILTLGQMNSL  118
            N   L + TWNNKVAH+RA+FN ++   L+   +NPFNG +VR+++K+KK LT ++++ +
Sbjct  65   NKQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKI  124

Query  119  YLLMKQYCERERDLPASHCFNTRNHAFYPSWFWLTLLDVLRYTGVRQNQLLHLRLCDINL  178
            YL+M     RER+   +        A+ P+WFWLT++D LRYTG+RQNQLLH+RL D+NL
Sbjct  125  YLIME---AREREEHVG-IMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNL  180

Query  179  DERSIELRIAGSKNHKEHRVPIVSALFPQLELLVNRALDAGAEPQDQLFNVGRFDLRRRD  238
            ++  I+LR  +SKNHKEHR+PI   L P+LE LV  A++ GA+  DQLFN++R+D  R++
Sbjct  181  NDGWINLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRID-GRKE  239

Query  239  KYPLEMDQYPLRAFFRRLSKECRFTVSPHRFRHTIATHMMKSPDRNLQAVKKLLGHVSIQ  298
                +MD  PLR+FFRRLS ECR T+SPHRFRHTIAT+MMKSPDRNL+ V+ LLGH SI 
Sbjct  240  TVTENMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIA  299

Query  299  STLEYIDENVDSLRDILE  316
             TLEY++ ++DSLR  LE
Sbjct  300  VTLEYVEGDIDSLRLALE  317

22) YE105_C3207 in NC_015224


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  289 bits (1081),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 170/318 (54%), Positives = 234/318 (74%), Gaps = 7/318 (2%)

Query  1    MSHITFELLLDKYFFSKSLRPTTEWSYQKVVNSFEQYTPK--LPHEINDQIVLEWRRYVL  58
            M+   ++ +L+ YFFSKSLRP+TEWSY+KV+NSF +Y     LP E++   VL+WRR VL
Sbjct  5    MNKANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVL  64

Query  59   NDLRLEPRTWNNKVAHLRALFNFGMKKKLLKHEENPFNGSVVRAGIKKKKILTLGQMNSL  118
            N   L + TWNNKVAH+RA+FN ++   L+   +NPFNG +VR+++K+KK LT ++++ +
Sbjct  65   NKQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKI  124

Query  119  YLLMKQYCERERDLPASHCFNTRNHAFYPSWFWLTLLDVLRYTGVRQNQLLHLRLCDINL  178
            YL+M     RER+   +        A+ P+WFWLT++D LRYTG+RQNQLLH+RL D+NL
Sbjct  125  YLIME---AREREEHVG-IMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNL  180

Query  179  DERSIELRIAGSKNHKEHHVPIVSALFPQLELLVNRALDAGAEPQDQLFNVGRFDLRRRD  238
            ++  I+LR  +SKNHKEH++PI   L P+LE LV  A++ GA+  DQLFN++R+D  R++
Sbjct  181  NDGWINLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRID-GRKE  239

Query  239  KYPLEMDQYPLRAFFRRLSKECRFTVSPHRFRHTIATHMMKSPDRNLQAVKKLLGHVSIQ  298
                +MD  PLR+FFRRLS ECR T+SPHRFRHTIAT+MMKSPDRNL+ V+ LLGH SI 
Sbjct  240  TVTENMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIA  299

Query  299  SILEYIDENVDSLRDILE  316
              LEY++ ++DSLR  LE
Sbjct  300  VTLEYVEGDIDSLRLALE  317

23) LF82_703 in NC_011993


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  283 bits (1058),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 173/318 (55%), Positives = 244/318 (77%), Gaps = 7/318 (2%)

Query  1    MNVCTFGTLTEHYFYSKSLRPATEWSYQKVVRSFEGFTPHN--PANIDHLTVLKWRHRVL  58
            MN   ++ + ++YF+SKSLRPATEWSY+KV+ SF  +  +N  P+++D+LTVL+WR++VL
Sbjct  5    MNKANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVL  64

Query  59   NDQNCATRTWNNKVAHMRALFNFGIKQGLLPQAENPFNGAVVRPGtkkkktltqtqMDAM  118
            N Q  ++ TWNNKVAHMRA+FN ++ ++L++  +NPFNG +VRP+ K+KKTLTQ+++  +
Sbjct  65   NKQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKI  124

Query  119  YRLMERHLETEGRKGNSSMFNGRRNALRPVWFWLTVMNVFRYTAIRQNQLLHIRLGDINL  178
            Y +ME    +  R  + ++    R+ALRP WFWLTV++ +RYT++RQNQLLHIRLGD+NL
Sbjct  125  YLIME----AREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNL  180

Query  179  EERWIDLNIEGAKNHREHRVPIVSALYPSLELLVLRAGEVGMELDDQLFNVGWFDLVRKK  238
            ++ WI+L  E++KNH+EHR+PI   L P LE LV  A E G +  DQLFN++++D  RK 
Sbjct  181  NDGWINLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRID-GRKE  239

Query  239  KYPEVMNEYPLRAFFKRLSRECKFTISPHRFRHTVATHMMKSPERNLYVVKKLLGHVSIT  298
               E M+  PLR+FF+RLS EC+ TISPHRFRHT+AT+MMKSP+RNL VV+ LLGH SI+
Sbjct  240  TVTENMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIA  299

Query  299  STLEYIDENVDSLRNILE  316
             TLEY++ ++DSLR  LE
Sbjct  300  VTLEYVEGDIDSLRLALE  317

24) NRG857_21025 in NC_017634


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  283 bits (1058),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 173/318 (55%), Positives = 244/318 (77%), Gaps = 7/318 (2%)

Query  1    MNVCTFGTLTEHYFYSKSLRPATEWSYQKVVRSFEGFTPHN--PANIDHLTVLKWRHRVL  58
            MN   ++ + ++YF+SKSLRPATEWSY+KV+ SF  +  +N  P+++D+LTVL+WR++VL
Sbjct  5    MNKANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVL  64

Query  59   NDQNCATRTWNNKVAHMRALFNFGIKQGLLPQAENPFNGAVVRPGtkkkktltqtqMDAM  118
            N Q  ++ TWNNKVAHMRA+FN ++ ++L++  +NPFNG +VRP+ K+KKTLTQ+++  +
Sbjct  65   NKQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKI  124

Query  119  YRLMERHLETEGRKGNSSMFNGRRNALRPVWFWLTVMNVFRYTAIRQNQLLHIRLGDINL  178
            Y +ME    +  R  + ++    R+ALRP WFWLTV++ +RYT++RQNQLLHIRLGD+NL
Sbjct  125  YLIME----AREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNL  180

Query  179  EERWIDLNIEGAKNHREHRVPIVSALYPSLELLVLRAGEVGMELDDQLFNVGWFDLVRKK  238
            ++ WI+L  E++KNH+EHR+PI   L P LE LV  A E G +  DQLFN++++D  RK 
Sbjct  181  NDGWINLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRID-GRKE  239

Query  239  KYPEVMNEYPLRAFFKRLSRECKFTISPHRFRHTVATHMMKSPERNLYVVKKLLGHVSIT  298
               E M+  PLR+FF+RLS EC+ TISPHRFRHT+AT+MMKSP+RNL VV+ LLGH SI+
Sbjct  240  TVTENMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIA  299

Query  299  STLEYIDENVDSLRNILE  316
             TLEY++ ++DSLR  LE
Sbjct  300  VTLEYVEGDIDSLRLALE  317

25) Spro_4048 in NC_009832


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  278 bits (1041),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 155/310 (50%), Positives = 236/310 (77%), Gaps = 4/310 (1%)

Query  14   LLEEYFFTKQLRSATEWSYRKVALTFTRFIGGIITPAMVTQRDVLVWRRHLLKEKSLSVH  73
            +L++YFF+K LR+ATEWSYRKV  +F R+IG+ + P+ V +  VL WRRH+L+ ++LS  
Sbjct  13   ILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLSSI  72

Query  74   TWNNKVAHLRAIFNLGIKKGLVQHTENPFNGTVVRSDTKKKRILTKTQLTRLYLVMQQYE  133
            TWNNKVAH+RAIFN ++  +LV   +NPFNG +VR+D K+K+ LT++++ ++YL+M+   
Sbjct  73   TWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEA-R  131

Query  134  QREKERKPVKGGKCALYPTWFWMTVLDTFRYTGMRNNQMIHIRLRDVNLEQGWIELRLEG  193
            +RE +   +  ++ AL P+WFW+TV+DT+RYTGMR+NQ++HIRL DVNL++GWI+LR E+
Sbjct  132  EREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLRPEA  191

Query  194  SKTHREWKVPLVRQLRERIKLLIMRATERGAGQHDLLFDVKRFTNPRHTHYIYDEKNVLQ  253
            SK H+E ++P+ R LR R+  L+  A E+GA Q D LF++ R+   ++T  + ++ +   
Sbjct  192  SKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKET--VTENMDS-P  248

Query  254  SFRSFYRRLSRDSGFDISSHRFRHTLATELMKSPDRNLKLVKDLLGHRNVSTTMEYIELD  313
            ++RSF+RRLS +    IS+HRFRHT+ATE+MKSPDRNLK+V+ LLGH +++ T+EY+E D
Sbjct  249  PLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGD  308

Query  314  MEVAGKALEQ  323
            ++    ALE+
Sbjct  309  IDSLRLALEE  318

26) CFSAN002050_21945 in NC_021818


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  276 bits (1031),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 164/310 (53%), Positives = 229/310 (74%), Gaps = 7/310 (2%)

Query  11   QELMDEYFFCKSLREDTEWSYKKVVRGFRKHIGEACPPYGITSRDVLEWRRHVLKKQCLS  70
            +E++++YFF KSLR  TEWSY+KV+ +FR+ IG+   P  +    VL+WRRHVL+KQ LS
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  71   AHTWNNKVSHMRALYNFAITSQLTNLSKNPFNGVSVkqdkkrkktltkNQMTKIWLTMQQ  130
            + TWNNKV+HMRA++N A+  +L ++ +NPFNGV V+ D KRKKTLT++++ KI L M+ 
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEA  130

Query  131  FASEPRTE----SKCALRPVWYWLTVLDTLRYTGMRQNQLLHIRLKDVSLDDGWIELRAE  186
               E +      S+ ALRP W+WLTV+DTLRYTGMRQNQLLHIRL DV+L+DGWI+LR+E
Sbjct  131  REREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLRPE  190

Query  187  GSKTYREWRVPVVSHLRPRLEALLQRARDCGAGNNDALFHYERFVSSPAERASLSEKPSL  246
            +SK  +E R+P+   LRPRLE L+  A + GA + D LF+  R+    + + +++E+   
Sbjct  191  ASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRI---DGRKETVTENMDS  247

Query  247  QPLRSFFRRLSKECGFDVSPHRFRHTLATTLMSSPERNLQLVKGLLGHRNVSTTMEYVDI  306
             PLRSFFRRLS EC   +SPHRFRHT+AT +M SP+RNL++V+ LLGH +++ T+EYV+ 
Sbjct  248  PPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEG  307

Query  307  SMDIVSQALE  316
             +D +  ALE
Sbjct  308  DIDSLRLALE  317

27) UMNK88_5071 in NC_017641


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  273 bits (1022),  Expect = 7e-75, Method: Compositional matrix adjust.
 Identities = 153/316 (49%), Positives = 233/316 (74%), Gaps = 7/316 (2%)

Query  11   DNLMDEYFFCKSLRRATEWSYRKVLSGFRKFVGFHRTPDSIVRRDVQEWRRFVLKDQGLT  70
            D+++++YFF KSLR ATEWSYRKV+++FR+++G +  P+ + R  V +WRR VL+ QGL+
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  71   SHTWNNKVRHMRAIYNFGEESGLITVSENPFSGMLVKQEKRRKKTLTKAQITRVVLILQQ  130
            S TWNNKV HMRAI+N +   +L++  +NPF+G++V+ + +RKKTLT+++I ++ LI++ 
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIME-  129

Query  131  FSEAENQHAGLYIKC--AIRPAWFWLTVVNTLRYTGMRLNQLLHLRLKDVCPAEKWIDLR  188
             +   ++H G+  K   A+RPAWFWLTVV+TLRYTGMR NQLLH+RL DV   + WI+LR
Sbjct  130  -AREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLR  188

Query  189  AEGSKTHREWRIPVARQLQPQLQKLLDEAVRRGATPEDYLFHYKRFVVPVSEAKRITGLP  248
            +E+SK H+E RIP+AR L+P+L++L+  A+ +GA   D LF+  R+    +    +T   
Sbjct  189  PEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRI---DGRKETVTENM  245

Query  249  DEQPVKSFFRRLSQECGFQVSPHRFRHTLASILMSTPERNLHLVKNMLGHQNVSTTMGYV  308
            D  P++SFFRRLS EC   +SPHRFRHT+A+ +M +P+RNL +V+ +LGH +++ T+ YV
Sbjct  246  DSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYV  305

Query  309  EMNLEIAAQALEHELE  324
            E +++    ALE+ +E
Sbjct  306  EGDIDSLRLALEETFE  321

28) NT01EI_0370 in NC_012779


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  272 bits (1018),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 157/312 (51%), Positives = 235/312 (76%), Gaps = 7/312 (2%)

Query  8    DELLEEYFFAHRLRPATEWSYSKVVRGFRRYSCDTL-PAQITHRQVLEWRRYLLQDKQQS  66
            DE+L++YFF+  LRPATEWSY KV+ +FRRY  D L P+++ +  VL+WRR +L+ +  S
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  67   AQTWNNKIAHLRALYNYGMEYEILPPGKNPFNKSNVQRDTRKKKTLTRSQLIRVYLVMQQ  126
            + TWNNK+AH+RA++N ++  ++++  +NPFN   V+ D ++KKTLT+S++ ++YL+M  
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIM--  128

Query  127  FEEAERAGH-GIRG-GRNALWPAWYWLTVLDSFRYTGMRLNQLLHIRLGDINLSEGYLDL  184
             E  ER  H GI G +R+AL+PAW+WLTV+D++RYTGMR NQLLHIRLGD+NL++G ++L
Sbjct  129  -EAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINL  187

Query  185  CLEGSKTHREWRVPIVSALKPRLHHLTEKSTELGAGNEDYLFDVNRIHLKRHMAWDAAKV  244
              E+SK H+E R+PI   L+PRL++L   + E GA + D LF+++RI+ +++   +    
Sbjct  188  RPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDS  247

Query  245  YQKIRSFFRRLSKECGFAVSPHRFRHTLATELMKSPERNLQLVKDLLGHRSVSTTMEYVE  304
               +RSFFRRLS EC  ++SPHRFRHT+ATE+MKSP+RNL++V+ LLGH S++ T+EYVE
Sbjct  248  -PPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVE  306

Query  305  LKMDIVGKTLEA  316
              +D +  +LE 
Sbjct  307  GDIDSLRLALEE  318

29) plu1166 in NC_005126


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  254 bits (947),  Expect = 5e-69, Method: Compositional matrix adjust.
 Identities = 153/307 (50%), Positives = 230/307 (75%), Gaps = 1/307 (0%)

Query  1    MDSMTWDNLLDEYFFAKILRPATESSYRKVVNTFQVFAGADNRPAQVTRQQVLAWRRYVL  60
            M+    D++L++YFF+K LRPATE SYRKV+N+F+ + G +  P++V R  VL WRR VL
Sbjct  5    MNKANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVL  64

Query  61   HQRGLKGVTWNSKIAHMRSVFNLAIEEKILPQTENPFIGVEVNENKNkkktltkkqlttl  120
            +++GL ++TWN+K+AHMR++FN A+ + +++  +NPF GV V  + ++KKTLT+ ++  +
Sbjct  65   NKQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKI  124

Query  121  yltMGQFEERERRTGDNHRARCALYPTWYWLTVLDTLRYTGMRQNQLLHIRLGDIDLDER  180
            YL M    ERE + G   ++R AL P+W+WLTV+DTLRYTGMRQNQLLHIRLGD++L++ 
Sbjct  125  YLIMEA-REREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDG  183

Query  181  RIILCSEGSKNHYEHQVPVVKWLYPRLEILLERAQAAGAKPSDPLFCVNYFTAKTDRGSE  240
            +I L +E+SKNH EH++P+ + L PRLE L+  A   GA+  D LF ++ + ++ +  +E
Sbjct  184  WINLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTE  243

Query  241  TDQLQTIKSFFRRLSKECGFDVGPHRFRHTLATELMKAPDRNLQMVRGLLGHRSIATTME  300
              +   ++SFFRRLS EC   ++PHRFRHT+ATE+MK+PDRNL++V+ LLGH SIA T+E
Sbjct  244  NMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLE  303

Query  301  YIDINLD  307
            Y++ ++D
Sbjct  304  YVEGDID  310

30) XNC1_3129 in NC_014228


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  249 bits (929),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 157/312 (51%), Positives = 229/312 (74%), Gaps = 7/312 (2%)

Query  6    EKMGWDALLDEYFFSRMLRPATEWSYRKVVRVFIRYLGETGLPESVTHRDVLCWRRHLLM  65
            +K   D +L++YFFS+ LRPATEWSYRKV+  F RY+G+  LP  V +  VL WRRH+L 
Sbjct  6    NKANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLN  65

Query  66   EKNQSGYTWNNKVAHLRAIFNFGMERKLLSHPKNPFNDAAVkkekkqkktlskAQITGIY  125
             +  S+ TWNNKVAH+RAIFN ++ + L+S  +NPFN+  V+ + K+KKTL++++I  IY
Sbjct  66   KQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIY  125

Query  126  LRMQQYEEEERLQTAPRGGRCALYPTGYWLTVLDTFRLTGMRLNQLLHLRLRDINLDNSY  185
            L M+  E EE++    + +R AL P+ +WLTV+DT+R TGMR NQLLH+RL D+NL+++ 
Sbjct  126  LIMEAREREEHVGIMGK-SRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGW  184

Query  186  IELRVEGSKNHSEWRVPMIPQLKPRLAQLVEQAKACGAKEDDPLFDLTRLRFRHHGRHVS  245
            I+LR E+SKNH E R+P+   L+PRL +LV  A   GA++ D LF+++R+    +GR   
Sbjct  185  INLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRI----DGR--K  238

Query  246  HQYSHDREKQHLRSFFNRLSKECGFAVSPHRFRHTLATELMKAPDRNLQLVRCLLGHRSV  305
            +  +++ +   LRSFF RLS EC  ++SPHRFRHT+ATE+MK+PDRNL++V+ LLGH S+
Sbjct  239  ETVTENMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSI  298

Query  306  ATTMEYIDIDME  317
            A T+EY++ D++
Sbjct  299  AVTLEYVEGDID  310

31) plu1029 in NC_005126


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  249 bits (931),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 151/307 (50%), Positives = 227/307 (74%), Gaps = 1/307 (0%)

Query  1    MDSMTWDNLLDEYFFARILRPDTESSYRKVVNTFKVFAGVSNRPAQVTRQQVLAWRRYVL  60
            M+    D++L++YFF++ LRP TE SYRKV+N+F+ + G +  P++V R  VL WRR VL
Sbjct  5    MNKANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVL  64

Query  61   HQSGLKGVTWNSKIAHMRSVFNLAIEEKILPQTENPFIGVEVNENKNkkktltkkqlttl  120
            ++ GL ++TWN+K+AHMR++FN A+ + +++  +NPF GV V  + ++KKTLT+ ++  +
Sbjct  65   NKQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKI  124

Query  121  yltMGQFEERERRTGDNHRARCALYPTWYWLTVLDTLRYTGMRQNQLLHIRLGDIDLDVR  180
            YL M    ERE + G   ++R AL P+W+WLTV+DTLRYTGMRQNQLLHIRLGD++L+  
Sbjct  125  YLIMEA-REREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDG  183

Query  181  RIILCSEGSKNHYEHQVPVVKWLYPRLEILLERAQAAGAKPSDPLFCVNYFTAKTDRGSE  240
            +I L +E+SKNH EH++P+ + L PRLE L+  A   GA+  D LF ++ + ++ +  +E
Sbjct  184  WINLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTE  243

Query  241  TDQLQTIKSFFRRLSKECGFDVGPHRFRHTLATELMKAPDRNLQMVRGLLGHRSIATTME  300
              +   ++SFFRRLS EC   ++PHRFRHT+ATE+MK+PDRNL++V+ LLGH SIA T+E
Sbjct  244  NMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLE  303

Query  301  YIDINLD  307
            Y++ ++D
Sbjct  304  YVEGDID  310

32) XNC1_3598 in NC_014228


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  249 bits (929),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 157/317 (50%), Positives = 229/317 (73%), Gaps = 7/317 (2%)

Query  1    MSNNEEKMGWDALLDEYFFSRMLRPATEWSYRKVVRVFIRYLGETGLPEGVTHRDVLCWR  60
            M  + +K   D +L++YFFS+ LRPATEWSYRKV+  F RY+G+  LP  V +  VL WR
Sbjct  1    MEIEMNKANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWR  60

Query  61   RHLLMEKNQSGYTWNNKVAHLRAIFNFGMERKLLSHPKNPFNDAAVkkekkqkkilskAQ  120
            RH+L  +  S+ TWNNKVAH+RAIFN ++ + L+S  +NPFN+  V+ + K+KK L++++
Sbjct  61   RHVLNKQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSE  120

Query  121  ITGIYLRMQQYEEEERLQTAPRGGRCALYPTGYWLTVLDTFRLTGMRLNQLLHLRLRDIN  180
            I  IYL M+  E EE++    + +R AL P+ +WLTV+DT+R TGMR NQLLH+RL D+N
Sbjct  121  IKKIYLIMEAREREEHVGIMGK-SRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVN  179

Query  181  LDNSYIELRVEGSKNHSEWRVPMIPQLKPRLAQLVEQAKACGAKEDDPLFDLTRLRFCHH  240
            L+++ I+LR E+SKNH E R+P+   L+PRL +LV  A   GA++ D LF+++R+    +
Sbjct  180  LNDGWINLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRI----D  235

Query  241  GRHVSHQYHHDREKQHLRSFFNRLSKECGFAVSPHRFRHTLATELMKAPDRNLQLVRCLL  300
            GR   +   ++ +   LRSFF RLS EC  ++SPHRFRHT+ATE+MK+PDRNL++V+ LL
Sbjct  236  GR--KETVTENMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLL  293

Query  301  GHRSVATTMEYIDIDME  317
            GH S+A T+EY++ D++
Sbjct  294  GHSSIAVTLEYVEGDID  310

33) XBJ1_1459 in NC_013892


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  249 bits (929),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 145/307 (48%), Positives = 217/307 (71%), Gaps = 7/307 (2%)

Query  11   EALLDEYFFSHILRPDTEWSYRKVVRGFIRFMGEAASPAQVTHRDVLRWRRHLLLEKKQS  70
            + +L++YFFS  LRP TEWSYRKV+ +F R++G+   P++V +  VL WRRH+L  +  S
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  71   SHTWNNKVAHLRAIFNFGMEQKLLPHTENPFNNAVVkkekkkkkILSESQINRINLLMGK  130
            S TWNNKVAH+RAIFN ++ + L++  +NPFN  +V+ + K+KK L++S+I++I L+M  
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEA  130

Query  131  FAEDERTQVAPKGGRCALYPTWYWSTVLATLRFTGMRQNQLLHLRLRDINLEGNSIELGL  190
               +E+  +  K +R AL P+W+W TV+ TLR+TGMRQNQLLH+RL D+NL++  I+L  
Sbjct  131  REREEHVGIMGK-SRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLRP  189

Query  191  AGSKNHCEWEVPIVHPLKPRLAHLIERATAAGAEAGDPIFDLSRLSVPHPSRLSRYKYDI  250
             +SKNH E  +PI + L+PRL +L+  A   GA+  D +F++SR+     +         
Sbjct  190  EASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKET------VTE  243

Query  251  NREKQQLRSFFRRLSRECDFAVSPHRFRHTVASTLMKAPDRNLPLVKRLLGHRNVATTME  310
            N +   LRSFFRRLS EC  ++SPHRFRHT+A+ +MK+PDRNL +V+ LLGH ++A T+E
Sbjct  244  NMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLE  303

Query  311  YIDLDME  317
            Y++ D++
Sbjct  304  YVEGDID  310

34) XNC1_3639 in NC_014228


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  246 bits (920),  Expect = 9e-67, Method: Compositional matrix adjust.
 Identities = 154/314 (50%), Positives = 216/314 (69%), Gaps = 7/314 (2%)

Query  11   EALLEEYFFSHILRPDTEWSYCKVTRGFIRFMGEAASPAQITHRDVLWWRRHLLVEKKQS  70
            + +L++YFFS  LRP TEWSY KV  +F R++G+   P+++ +  VL WRRH+L  +  S
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  71   SHTWNNKVAHLRAIFNFGMERKLLSHTENPFNNAVVkkekkkkkILSQSQITLINLLMGK  130
            S TWNNKVAH+RAIFN ++ + L+S  +NPFN  +V+ + K+KK L+QS+I  I L+M  
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEA  130

Query  131  FAEEERTEVTPRGGRCALYPTWYWSTVLATLRFTGMRQNQLLHLRLRDINLESNYIELGL  190
               EE+  +  + +R AL P+W+W TV+ TLR+TGMRQNQLLH+RL D+NL+   I+L  
Sbjct  131  REREEHVGIMGK-SRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLRP  189

Query  191  EGSKNHSEWEIPIIPPLKPRLAKLVERAIAAGAKANDPIFDLSRLSVPHPSRLSRYKYDI  250
            E+SKNH E  IPI   L+PRL +LV  AI  GA+  D +F++SR+     +         
Sbjct  190  EASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKET------VTE  243

Query  251  NREKQQLRSFFRRLSKECDFAVSPHRFRHTLATTLMKSPDRNLPLVKRLLGHRNVATTME  310
            N +   LRSFFRRLS EC  ++SPHRFRHT+AT +MKSPDRNL +V+ LLGH ++A T+E
Sbjct  244  NMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLE  303

Query  311  YIDLDMEVTGKALE  324
            Y++ D++    ALE
Sbjct  304  YVEGDIDSLRLALE  317

35) XNC1_3506 in NC_014228


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  245 bits (913),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 156/312 (50%), Positives = 227/312 (73%), Gaps = 7/312 (2%)

Query  6    EKMGWDALLDEYFFSRMLRPATEWSYRKVVRVFIRYLGETGSPESVTHRDVLCWRRHLLM  65
            +K   D +L++YFFS+ LRPATEWSYRKV+  F RY+G+   P  V +  VL WRRH+L 
Sbjct  6    NKANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLN  65

Query  66   EKNQSGYTWNNKVAHLRAIFNFGMERKLLSHPKNPFNDAAVkkekkqkktlskAQITGIY  125
             +  S+ TWNNKVAH+RAIFN ++ + L+S  +NPFN+  V+ + K+KKTL++++I  IY
Sbjct  66   KQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIY  125

Query  126  LRMQQYEEEERLQTAPRGGRCALYPTGYWLTVLDTFRLTGMRLNQLLHLRLRDINLDNSY  185
            L M+  E EE++    + +R AL P+ +WLTV+DT+R TGMR NQLLH+RL D+NL+++ 
Sbjct  126  LIMEAREREEHVGIMGK-SRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGW  184

Query  186  IELRVEGSKNHSEWRVPMIPQLKPRLAQLVEQAKACGAKENDPLFDLTRLRFRYHGRHVS  245
            I+LR E+SKNH E R+P+   L+PRL +LV  A   GA++ D LF+++R+    +GR   
Sbjct  185  INLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRI----DGR--K  238

Query  246  HQYHHDREKQHLRSFFNRLSKECGFAVSPHRFRHTLATELMKAPDRNLQLVRCLLGHRSL  305
            +   ++ +   LRSFF RLS EC  ++SPHRFRHT+ATE+MK+PDRNL++V+ LLGH S+
Sbjct  239  ETVTENMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSI  298

Query  306  ATTMEYIDIDME  317
            A T+EY++ D++
Sbjct  299  AVTLEYVEGDID  310

36) XBJ1_1557 in NC_013892


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  244 bits (909),  Expect = 6e-66, Method: Compositional matrix adjust.
 Identities = 155/307 (51%), Positives = 224/307 (73%), Gaps = 7/307 (2%)

Query  11   DALLDEYFFSRMLRPATEWSYRKVVRVFIRYLGETESPESVTHRDVLRWRRHLLTEKNQS  70
            D +L++YFFS+ LRPATEWSYRKV+  F RY+G+   P  V +  VL WRRH+L  +  S
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  71   RYTWNNKVAHLRAIFNFGMERKLLSHPKNPFNDASVkkekkqkktlskAQITGIYLRMQQ  130
              TWNNKVAH+RAIFN ++ + L+S  +NPFN+  V+ + K+KKTL++++I  IYL M+ 
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEA  130

Query  131  YEEEERLQTSPRGGRCALYPTGYWLTVLDTFRLTGMRLNQLLHLRLRDINLDNSYIELRV  190
             E EE++    + +R AL P+ +WLTV+DT+R TGMR NQLLH+RL D+NL+++ I+LR 
Sbjct  131  REREEHVGIMGK-SRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLRP  189

Query  191  EGSKNHSEWRVPMIPQLKPRLVQLVEQAKACGAKENDPLFDLTRLRFRYHGRHVSYQYHH  250
            E+SKNH E R+P+   L+PRL +LV  A   GA++ D LF+++R+    +GR  +    +
Sbjct  190  EASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRI----DGRKETVT--E  243

Query  251  DREKQHLRSFFNRLSKECGFAVSPHRFRHTLATELMKAPDRNLQLVRCLLGHRSLATTME  310
            + +   LRSFF RLS EC  ++SPHRFRHT+ATE+MK+PDRNL++V+ LLGH S+A T+E
Sbjct  244  NMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLE  303

Query  311  YIDIDME  317
            Y++ D++
Sbjct  304  YVEGDID  310

37) SerAS12_0340 in NC_015566


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  241 bits (900),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 150/312 (49%), Positives = 212/312 (68%), Gaps = 3/312 (0%)

Query  10   DTLLEEYFFSKVLRPETERSYRRVVAVFRRFIGYGTLPDAVTNRELILWRRDMLGR-GLT  68
            D +L++YFFSK LRP TE+SYR+V+  FRR+IG   LP+ V    ++ WRR++L + GL+
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  69   TSTWNNKARHLRAIYNQGMKKKWLNVEENPLNETQVPPGNKRKKTLNRDQLVKVNLVLEQ  128
            + TWNNK  H+RAI+N+++    ++  +NP+N   V P+ KRKKTL + ++ K+ L++E 
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEA  130

Query  129  FEEREKLRV-GKCRPCALFPVWYWRTVIDVLRSTGMRQNQLLHIRLMDVDLEANSMLLCK  187
             E  E + + GK R  AL P W+W TV+D LR TGMRQNQLLHIRL DV+L+   + L  
Sbjct  131  REREEHVGIMGKSR-SALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLRP  189

Query  188  EGSKTHREWLVPIVSFIRERMRILVNRAIAQGAEPADYLFDVARFLNPLGEVDSEPAIQP  247
            E+SK H+E  +PI   +R R+  LV  AI +GA+  D LF+++R+      V  +    P
Sbjct  190  EASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDSPP  249

Query  248  VRSFFTRLTKECGFKVSPHRFRHTLATEMMKSPDRNLAMVKGLLGHRSVSTTMEYVELDL  307
            +RSFF RL+ EC   +SPHRFRHT+ATEMMKSPDRNL +V+ LLGH S++ T+EYVE D+
Sbjct  250  LRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDI  309

Query  308  KVTGQALENELS  319
                 ALE+ + 
Sbjct  310  DSLRLALEETFE  321

38) SerAS13_0340 in NC_017573


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  241 bits (900),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 150/312 (49%), Positives = 212/312 (68%), Gaps = 3/312 (0%)

Query  10   DTLLEEYFFSKVLRPETERSYRRVVAVFRRFIGYGTLPDAVTNRELILWRRDMLGR-GLT  68
            D +L++YFFSK LRP TE+SYR+V+  FRR+IG   LP+ V    ++ WRR++L + GL+
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  69   TSTWNNKARHLRAIYNQGMKKKWLNVEENPLNETQVPPGNKRKKTLNRDQLVKVNLVLEQ  128
            + TWNNK  H+RAI+N+++    ++  +NP+N   V P+ KRKKTL + ++ K+ L++E 
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEA  130

Query  129  FEEREKLRV-GKCRPCALFPVWYWRTVIDVLRSTGMRQNQLLHIRLMDVDLEANSMLLCK  187
             E  E + + GK R  AL P W+W TV+D LR TGMRQNQLLHIRL DV+L+   + L  
Sbjct  131  REREEHVGIMGKSR-SALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLRP  189

Query  188  EGSKTHREWLVPIVSFIRERMRILVNRAIAQGAEPADYLFDVARFLNPLGEVDSEPAIQP  247
            E+SK H+E  +PI   +R R+  LV  AI +GA+  D LF+++R+      V  +    P
Sbjct  190  EASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDSPP  249

Query  248  VRSFFTRLTKECGFKVSPHRFRHTLATEMMKSPDRNLAMVKGLLGHRSVSTTMEYVELDL  307
            +RSFF RL+ EC   +SPHRFRHT+ATEMMKSPDRNL +V+ LLGH S++ T+EYVE D+
Sbjct  250  LRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDI  309

Query  308  KVTGQALENELS  319
                 ALE+ + 
Sbjct  310  DSLRLALEETFE  321

39) SerAS9_0340 in NC_015567


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  241 bits (900),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 150/312 (49%), Positives = 212/312 (68%), Gaps = 3/312 (0%)

Query  10   DTLLEEYFFSKVLRPETERSYRRVVAVFRRFIGYGTLPDAVTNRELILWRRDMLGR-GLT  68
            D +L++YFFSK LRP TE+SYR+V+  FRR+IG   LP+ V    ++ WRR++L + GL+
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  69   TSTWNNKARHLRAIYNQGMKKKWLNVEENPLNETQVPPGNKRKKTLNRDQLVKVNLVLEQ  128
            + TWNNK  H+RAI+N+++    ++  +NP+N   V P+ KRKKTL + ++ K+ L++E 
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEA  130

Query  129  FEEREKLRV-GKCRPCALFPVWYWRTVIDVLRSTGMRQNQLLHIRLMDVDLEANSMLLCK  187
             E  E + + GK R  AL P W+W TV+D LR TGMRQNQLLHIRL DV+L+   + L  
Sbjct  131  REREEHVGIMGKSR-SALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLRP  189

Query  188  EGSKTHREWLVPIVSFIRERMRILVNRAIAQGAEPADYLFDVARFLNPLGEVDSEPAIQP  247
            E+SK H+E  +PI   +R R+  LV  AI +GA+  D LF+++R+      V  +    P
Sbjct  190  EASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDSPP  249

Query  248  VRSFFTRLTKECGFKVSPHRFRHTLATEMMKSPDRNLAMVKGLLGHRSVSTTMEYVELDL  307
            +RSFF RL+ EC   +SPHRFRHT+ATEMMKSPDRNL +V+ LLGH S++ T+EYVE D+
Sbjct  250  LRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDI  309

Query  308  KVTGQALENELS  319
                 ALE+ + 
Sbjct  310  DSLRLALEETFE  321

40) YPZ3_0342 in NC_014029


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  241 bits (898),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 149/315 (48%), Positives = 217/315 (69%), Gaps = 5/315 (1%)

Query  8    DWETLLEEYFFSKALRPETEMSYRRVVAVFRKFIGNDMLPDEVTNRELILWRRDMLGR-G  66
            + + +L++YFFSK+LRP TE SYR+V+  FR++IG+++LP+EV    ++ WRR++L + G
Sbjct  9    NYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQG  68

Query  67   LTTSTWNNKVRHLRAIYNQGIKKKWLTLKENPLNETQVPPGSKRKKILSRDQLVRVNLVL  126
            L++ TWNNKV H+RAI+N+++    +++K+NP+N   V P+ KRKK L++ ++ ++ L++
Sbjct  69   LSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIM  128

Query  127  GQFEERENH--WLGQCRPCALYPVWYWRTVFDVLRSTGMRQNQLLHVRLKDVDLKANSIL  184
                ERE+H   +G+ R  AL P W+W TV D LR TGMRQNQLLH+RL DV+L+   I 
Sbjct  129  EA-REREEHVGIMGKSR-SALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWIN  186

Query  185  LCKKGSKTHREWLVPIVNFLSDRMRILVDRAIAQGAEPEDYLFDVKRFLNPFGEVGPEPA  244
            L   +SK H+E  +PI   L  R+  LV  AI +GA+  D LF++ R+      V  +  
Sbjct  187  LRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMD  246

Query  245  IQPVRSFFTRLTKECGFKVSPHRFRHTLATEMMKSPDRNLAMVKGLLGHRSVSTTLEYVE  304
              P+RSFF RL+ EC   +SPHRFRHT+ATEMMKSPDRNL +V+ LLGH S++ TLEYVE
Sbjct  247  SPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVE  306

Query  305  LDLKITGQALEDELS  319
             D+     ALE+ + 
Sbjct  307  GDIDSLRLALEETFE  321

41) M621_21450 in NC_021659


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  240 bits (895),  Expect = 8e-65, Method: Compositional matrix adjust.
 Identities = 149/312 (48%), Positives = 213/312 (69%), Gaps = 3/312 (0%)

Query  22   DTLLEEYFFSKVLRPETERSYRRVVAVFRKFIGYDTLPDEVTNRELILWRRDMLGR-GLT  80
            D +L++YFFSK LRP TE+SYR+V+  FR++IG + LP+EV    ++ WRR++L + GL+
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  81   RSTWNNKARHLRAIYNQGMKKKWLNVEENPLNETQVPPGNKRKKTLNRDQLVKVNLVLEQ  140
              TWNNK  H+RAI+N+++    ++  +NP+N   V P+ KRKKTL + ++ K+ L++E 
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEA  130

Query  141  FEEREKLRV-GKCRPCALFPVWYWRTVIDVLRSTGMRQNQLLHIRLMDVDLEANSMLLCK  199
             E  E + + GK R  AL P W+W TV+D LR TGMRQNQLLHIRL DV+L+   + L  
Sbjct  131  REREEHVGIMGKSR-SALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLRP  189

Query  200  EGSKTHREWLVPIVSFIRERMRILVDRAIAQGAEPAGYLFDVARFLNPLGDVDSEPAIQP  259
            E+SK H+E  +PI   +R R+  LV  AI +GA+  + LF+++R+      V  +    P
Sbjct  190  EASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDSPP  249

Query  260  VRSFFTRLTKECGFKVSPHRFRHTLATEMMKSPDRNLAMVKGLLGHRSVSTTMEYVELDL  319
            +RSFF RL+ EC   +SPHRFRHT+ATEMMKSPDRNL +V+ LLGH S++ T+EYVE D+
Sbjct  250  LRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDI  309

Query  320  KVTGQALENELS  331
                 ALE+ + 
Sbjct  310  DSLRLALEETFE  321

42) Spro_4117 in NC_009832


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  239 bits (891),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 149/312 (48%), Positives = 213/312 (69%), Gaps = 3/312 (0%)

Query  10   DTLLEEYFFSKALRPETERSYRRVVAVFRKFIGYETLPDEVTNRELILWRRDMLGR-GLT  68
            D +L++YFFSK+LRP TE+SYR+V+  FR++IG + LP+EV    ++ WRR++L + GL+
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  69   TSTWNNKARHLRAIYNQGIKKKWLNVVENPLNETQVPPGSKRKKILNRDQLVKVNLALEQ  128
            + TWNNK  H+RAI+N+++    ++  +NP+N   V P+ KRKK L + ++ K+ L +E 
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEA  130

Query  129  FEEREKLRV-GKCRPCALFPVWYWRTVIDVLRSTGMRQNQLLHIRLMDVDLEANSMLLCK  187
             E  E + + GK R  AL P W+W TV+D LR TGMRQNQLLHIRL DV+L+   + L  
Sbjct  131  REREEHVGIMGKSR-SALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLRP  189

Query  188  EGSKTHREWLVPIVSFIRERMRILVDRAIAQGAEPADYLFDVARFLNPLGEVDSEPAIQP  247
            E+SK H+E  +PI   +R R+  LV  AI +GA+  D LF+++R+      V  +    P
Sbjct  190  EASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDSPP  249

Query  248  VRSFFTRLTKECGFKVSPHRFRHTLATEMMKSPDRNLAMVKGLLGHRSVSTTMEYVELDL  307
            +RSFF RL+ EC   +SPHRFRHT+ATEMMKSPDRNL +V+ LLGH S++ T+EYVE D+
Sbjct  250  LRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDI  309

Query  308  KVTGQALENELS  319
                 ALE+ + 
Sbjct  310  DSLRLALEETFE  321

43) Spro_0401 in NC_009832


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  237 bits (883),  Expect = 6e-64, Method: Compositional matrix adjust.
 Identities = 149/312 (48%), Positives = 214/312 (69%), Gaps = 3/312 (0%)

Query  10   DTLLEEYFFSKALRPETEKSYRRVVAVFRKFIGYDRLPDEVTNRDLILWRRDMLGR-GLT  68
            D +L++YFFSK+LRP TE SYR+V+  FR++IG + LP+EV    ++ WRR++L + GL+
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  69   TSTWNNKARHLRAIYNQGIKKKWLNVVENPLNETQVPSGNKRKKTLNRDQLVKVNLVLEQ  128
            + TWNNK  H+RAI+N+++    ++  +NP+N   V ++ KRKKTL + ++ K+ L++E 
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEA  130

Query  129  FEEREKLRV-GKCRPCALFPVWYWRTVIDVLRSTGMRQNQLLHIRLMDVDLEANSMLLCK  187
             E  E + + GK R  AL P W+W TV+D LR TGMRQNQLLHIRL DV+L+   + L  
Sbjct  131  REREEHVGIMGKSR-SALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLRP  189

Query  188  EGSKTHREWLVPIVSFIRERMRILVDRAIAQGAEPADYLFDVARFLNPLGEVDSEPAIQP  247
            E+SK H+E  +PI   +R R+  LV  AI +GA+  D LF+++R+      V  +    P
Sbjct  190  EASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDSPP  249

Query  248  VRSFFTRLTKECGFKVSPHRFRHTLATEMMKSPDRNLAMVKGLLGHRSVSTTMEYVELDL  307
            +RSFF RL+ EC   +SPHRFRHT+ATEMMKSPDRNL +V+ LLGH S++ T+EYVE D+
Sbjct  250  LRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDI  309

Query  308  KITGQALENELS  319
                 ALE+ + 
Sbjct  310  DSLRLALEETFE  321

44) KPHS_44700 in NC_016845


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  235 bits (877),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 142/264 (54%), Positives = 197/264 (75%), Gaps = 4/264 (1%)

Query  2    VLRWKEEVLKVQGLKVRTWNNKVAHMRALFNFAIKKKLFQ-EENPFNGVVACPGVKRKKT  60
            VL W+ +VL+ QGL   TWNNKVAHMRA+FN A+   L    +NPFNGV+  P+VKRKKT
Sbjct  56   VLNWRRHVLNKQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKT  115

Query  61   LSDSQLETVYRVMQQQRGREQSG--DRYRNALAPAWFWTAVLDILRYTAIRQNQFLHIRI  118
            L++S++  +Y +M+ +   E+ G  ++ R+AL PAWFW +V+D LRYT++RQNQ+LHIR+
Sbjct  116  LTQSEIKKIYLIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRL  175

Query  119  SDVDFDSHCIHLRLEGAKNHREHQVPIISALRPSLEELVSQVTKAGAMPHEQLFNIAWFD  178
            +DV+++   I+LR E++KNH+EH++PI   LRP LE LV+     GA   +QLFNI+++D
Sbjct  176  GDVNLNDGWINLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRID  235

Query  179  FRRKANYQDGMTKVPLRSFFRRLSRECGFLVSPHRFRHTIATKLMRTPERNLQTVKTLLG  238
              RK    + M   PLRSFFRRLS EC   +SPHRFRHTIAT +M++P+RNL+ V+TLLG
Sbjct  236  -GRKETVTENMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLG  294

Query  239  HVSLASTLEYVEVNIESLKATLEQ  262
            H S+A TLEYVE +I+SL+ +LE+
Sbjct  295  HSSIAVTLEYVEGDIDSLRLALEE  318

45) N559_0834 in NC_022082


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  234 bits (873),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 141/264 (54%), Positives = 197/264 (75%), Gaps = 4/264 (1%)

Query  1    MLRWKEEVLKVQGLKVRTWNNKVAHMRALFNFAIKKKLFQ-EENPFNGVVACPGVKRKKT  59
            +L W+ +VL+ QGL   TWNNKVAHMRA+FN A+   L    +NPFNGV+  P+VKRKKT
Sbjct  56   VLNWRRHVLNKQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKT  115

Query  60   LSDSQLETVYRVMQQQRGREQSG--DRYRNALAPAWFWTAVLDILRYTAIRQNQFLHIRI  117
            L++S++  +Y +M+ +   E+ G  ++ R+AL PAWFW +V+D LRYT++RQNQ+LHIR+
Sbjct  116  LTQSEIKKIYLIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRL  175

Query  118  SDVDFDSHCIHLRLEGAKNHREHQVPIISALRPSLEELVSQVTKAGAMPHEQLFNIAWFD  177
            +DV+++   I+LR E++KNH+EH++PI   LRP LE LV+     GA   +QLFNI+++D
Sbjct  176  GDVNLNDGWINLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRID  235

Query  178  FRRKANYQDGMTKVPLRSFFRRLSRECGFLVSPHRFRHTIATKLMRTPERNLQTVKTLLG  237
              RK    + M   PLRSFFRRLS EC   +SPHRFRHTIAT +M++P+RNL+ V+TLLG
Sbjct  236  -GRKETVTENMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLG  294

Query  238  HVSLASTLEYVEVNIESLKATLEQ  261
            H S+A TLEYVE +I+SL+ +LE+
Sbjct  295  HSSIAVTLEYVEGDIDSLRLALEE  318

46) ECA0614 in NC_004547


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  234 bits (871),  Expect = 6e-63, Method: Compositional matrix adjust.
 Identities = 157/322 (49%), Positives = 240/322 (75%), Gaps = 7/322 (2%)

Query  9    DEIVDEYFFSHNLREATEISYRKVVSGFSRFMGETVSPAQITHRDVLKWRRNLLKERNLS  68
            DEI+++YFFS +LR ATE SYRKV+++F R++G+ + P+++ +  VL+WRR++L+ + LS
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  69   THTWNNKVAHMRAIFNFSIERNLIDQDKNPFNDAvvqkerkkkktltreqlTAIYLLMQR  128
            + TWNNKVAHMRAIFN ++ ++L+   +NPFN+ +V+ + K+KKTLT+ ++  IYL+M+ 
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEA  130

Query  129  IETEEPHAIWG-LRCALYPAWYWLTVLDALRYTGMRQNQLLHIRLQDINLDEGYIELRLE  187
             E EE  +I G  R AL PAW+WLTV+D+LRYTGMRQNQLLHIRL D+NL++G I+LR E
Sbjct  131  REREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLRPE  190

Query  188  GSKTHREWRVPAVrqlrarlasliaraklaGAEPSDILFDVTRFMKSRRHKDEYQYDEAR  247
            +SK H+E R+P  R LR+RL  L+A A   GA+  D LF+++R + +R++       E  
Sbjct  191  ASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISR-IDGRKET----VTENM  245

Query  248  AQQAIRSFFNRLSRDCGFLVSAHRFRHTLATELMKAPERNLLLVKDLLGHRNVSTTMEYV  307
               ++RSFF RLS +C   +S+HRFRHT+ATE+MK+P+RNL +V+ LLGH +++ T+EYV
Sbjct  246  DSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYV  305

Query  308  ELNMEIVGRTLEKELALHTDIY  329
            E +++ +  +LE  +  + +++
Sbjct  306  EGDIDSLRLALEETFE-RKEVF  326

47) EcE24377A_3356 in NC_009801


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  216 bits (805),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 139/318 (44%), Positives = 220/318 (70%), Gaps = 8/318 (2%)

Query  12   DELLDEYFFSRNLRPDTEWSYRKVVRGFVDFMGEGVFPADVTQRDIQRWRRQVLKTQSLS  71
            DE+L++YFFS++LRP TEWSYRKV+ +F  ++G+ ++P++V +  +  WRR+VL+ Q+LS
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLS  70

Query  72   TYTWNNKVAHLRAIFGFGIKKGLLPQTENPLCEASVakeakkkkTLNKDQMIQVYLVVQK  131
            + TWNNKVAH+RAIF  ++  +L++  +NP+    V  + K+KKTL + ++ ++YL+++ 
Sbjct  71   SITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIME-  129

Query  132  FAEYETQQRVPC-DRRRNALYPARYWLTVLDVLRYTGMRFNQLQHIRLKDVRPGEGVIEL  190
                E +++V   ++ R+AL PA++WLTV+D LRYTGMR NQL HIRL DV   +G I+L
Sbjct  130  --AREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINL  187

Query  191  QLEGSKTHREWCVPIVEPLKaplelllsrarrlgaGPDDFLFDVCRFTDCIEPDDYVYCP  250
            + E+SK H+E  +PI   L++ LE L++ A   GA   D LF++ R+ +  E        
Sbjct  188  RPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKET----VTE  243

Query  251  ARAHQAVKGFFRRLSRECGFLVSAHRFRHTLATILMESPERNMHLVKSMLGHQSIATTME  310
                 ++++FFRRLS EC   +S+HRFRHT+AT +M SP+RN+ +V+++LGH SIA T+E
Sbjct  244  NMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLE  303

Query  311  YVDVSVASAAGTLETALG  328
            YV+  + S   +LE ++ 
Sbjct  304  YVEGDIDSLRLALEETFE  321

48) SeAg_B4797 in NC_011149


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  212 bits (789),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 129/312 (42%), Positives = 207/312 (67%), Gaps = 10/312 (3%)

Query  2    TFEQILEEYFFARLLRPDTQSCYRTAVNQFTHW--RNVLPAEVTSHMVLEWRHYLLNVRC  59
             +++IL++YFF++ LRP T+  YR  +N F +    N+LP+EV    VL+WR+ +LN + 
Sbjct  9    NYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQG  68

Query  60   IKPVSWNHYMRHMRALYNFAIEQGLLEQFINPFQKTSLRESRRKKKTLTREQILASRKVL  119
            + +++WN+ + HMRA++N A+ ++L+    NPF+   +R   ++KKTLT+ +I   +K+ 
Sbjct  69   LSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEI---KKIY  125

Query  120  NQFIEREKMQRG-----YRSPLYPAWFWLTVVETFNYTAIRLNQLIHLRVRDIDLVHDTL  174
                 RE+ ++       RS+L PAWFWLTVV+T+ YT++R NQL+H+R+ D++L ++ +
Sbjct  126  LIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWI  185

Query  175  FIQSEGSKSHDEHIVPIASRLRPYLEHLLEEAKTKGMRADDQLFNINRFSRRTLRQGKPM  234
             +++E+SK+H EH +PIA  LRP LE+L+  A  KG    DQLFNI+R+  R       M
Sbjct  186  NLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENM  245

Query  235  TENQVSYFFAKLSDACHSRFSSHRYRHTVATELMQKPEQNLYVTQKLLGHRDIKVTLSYI  294
                +  FF +LS  C+  +S+HR+RHT+ATE+M+ P++NL V Q LLGH  I VTL Y+
Sbjct  246  DSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYV  305

Query  295  EHNVEMLRSCVE  306
            E +++ LR  +E
Sbjct  306  EGDIDSLRLALE  317

49) SARI_03154 in NC_010067


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  209 bits (779),  Expect = 1e-55, Method: Compositional matrix adjust.
 Identities = 127/312 (41%), Positives = 206/312 (67%), Gaps = 10/312 (3%)

Query  2    TFEQLLEEYFFARLLRPDTQSCYCTAVNQFTHW--RNVLPAEVTPHMVLEWRHYLLNVRC  59
             ++++L++YFF++ LRP T+  Y   +N F +    N+LP+EV    VL+WR+ +LN + 
Sbjct  9    NYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQG  68

Query  60   IKPVSWNHYMRHMRALYNFAIEQGLLEQFINPFQKTSLRESRKKKKTLTREQILASRKVL  119
            + +++WN+ + HMRA++N A+ ++L+    NPF+   +R   K+KKTLT+ +I   +K+ 
Sbjct  69   LSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEI---KKIY  125

Query  120  NQFIEREKIQR-----SYRSPLYPAWFWLTVVETFNYTAIRLNQLIHLRVRDIDLVHDTL  174
                 RE+ ++       RS+L PAWFWLTVV+T+ YT++R NQL+H+R+ D++L ++ +
Sbjct  126  LIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWI  185

Query  175  FIQSEGSKSHDEHIVPIASRLRPYLEQMLEEAKTKGIRADDQLFNINRFSRRTLRQGKPM  234
             +++E+SK+H EH +PIA  LRP LE+++  A  KG    DQLFNI+R+  R       M
Sbjct  186  NLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENM  245

Query  235  TENQVSYFFAKLSDACHSRFSSHRYRHTVATELMQKPEQNLYVTQKLLGHRDIKVTLSYI  294
                +  FF +LS  C+  +S+HR+RHT+ATE+M+ P++NL V Q LLGH  I VTL Y+
Sbjct  246  DSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYV  305

Query  295  EHNVEMLRSCVE  306
            E +++ LR  +E
Sbjct  306  EGDIDSLRLALE  317

50) PMI2549 in NC_010554


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  208 bits (774),  Expect = 3e-55, Method: Compositional matrix adjust.
 Identities = 124/303 (41%), Positives = 213/303 (71%), Gaps = 7/303 (2%)

Query  18   EQMLSNYFYNKVLRPDTEKTYRKMVRLFLRYCGVCENALPLPDEVTHEHVLRWRRNELNI  77
            +++L +YF++K LRP TE +YRK++  F RY G   + L LP+EV +  VL WRR+ LN 
Sbjct  11   DEILQDYFFSKSLRPATEWSYRKVINSFRRYIG---DNL-LPGEVDRLTVLNWRRHVLNK  66

Query  78   QKVRERTWNTKTRHMQSLYNYWIKKGIVSLKENPFSETQIEPGEKQKKVYTQSQLRTIYR  137
            Q +   TWN K  HM++++N  +  ++VS+K+NPF+   + P+ K+KK  TQS+++ IY 
Sbjct  67   QGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYL  126

Query  138  ILEQFQQQENMLPPDQAHFQACAVYPTRFWFAVLETLRLTAIRFNQLINLHIGDLDFEEC  197
            I+E  +++E++   ++++    A+ P++FW++V++TLR T++R NQL+++++GD+++++ 
Sbjct  127  IMEAREREEHVGIMGKSR---SALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDG  183

Query  198  TITLRSESSKNHREYQIAFVQPLRCLLAPLVEEMRCHGADKNDILFDVHRLYHKRLSRSE  257
             I LR+E+SKNH+E +I++ + LR  L  LV      GA++ D LF++ R+  ++ + +E
Sbjct  184  WINLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTE  243

Query  258  TPLSQTIRSFFRRLSKECGFHVSPHRFRHTLATTLMKHPERNMQLTKQMLGHRSLSSTME  317
               S  +RSFFRRLS EC   +SPHRFRHT+AT +MK P+RN+++ + +LGH S++ T+E
Sbjct  244  NMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLE  303

Query  318  YIA  320
            Y+ 
Sbjct  304  YVE  306

51) EC55989_4899 in NC_011748


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  208 bits (772),  Expect = 4e-55, Method: Compositional matrix adjust.
 Identities = 126/312 (41%), Positives = 205/312 (66%), Gaps = 10/312 (3%)

Query  29   TFEQLLEEYFFARLLRPDTQSCYCTAVNQYTHW--RNVLPAEVTPHMVLEWRHYLLNVRC  86
             ++++L++YFF++ LRP T+  Y   +N + +    N+LP+EV    VL+WR+ +LN + 
Sbjct  9    NYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQG  68

Query  87   IKPVSWNHYMRHMRALYNFAIEQGLLEQFINPFQKTSLRESRKKKKTLTREQILASRKVL  146
            + +++WN+ + HMRA++N A+ ++L+    NPF+   +R   K+KKTLT+ +I   +K+ 
Sbjct  69   LSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEI---KKIY  125

Query  147  NQFIEREKMQRG-----YRSPLYPAWFWLTVVETFNYTAIRLNQLIHLRVRDIDLVHDTL  201
                 RE+ ++       RS+L PAWFWLTVV+T+ YT++R NQL+H+R+ D++L ++ +
Sbjct  126  LIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWI  185

Query  202  FIQIEGSKSHDEHIVPIASRLRPYLEHLLEEAKTKGIRADDQLFNINRFSRRTLRQGKPM  261
             ++ E+SK+H EH +PIA  LRP LE+L+  A  KG    DQLFNI+R+  R       M
Sbjct  186  NLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENM  245

Query  262  TENQVSYFFAKLSDACHSRFPSHRYRHTVATELMQKPEQNLYVTQKLLGHRDIKVTLSYI  321
                +  FF +LS  C+  +++HR+RHT+ATE+M+ P++NL V Q LLGH  I VTL Y+
Sbjct  246  DSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYV  305

Query  322  EHNVEMLRSCVE  333
            E +++ LR  +E
Sbjct  306  EGDIDSLRLALE  317

52) O3M_22185 in NC_018650


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  207 bits (771),  Expect = 4e-55, Method: Compositional matrix adjust.
 Identities = 126/312 (41%), Positives = 205/312 (66%), Gaps = 10/312 (3%)

Query  2    TFEQLLEEYFFARLLRPDTQSCYCTAVNQYTHW--RNVLPAEVTPHMVLEWRHYLLNVRC  59
             ++++L++YFF++ LRP T+  Y   +N + +    N+LP+EV    VL+WR+ +LN + 
Sbjct  9    NYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQG  68

Query  60   IKPVSWNHYMRHMRALYNFAIEQGLLEQFINPFQKTSLRESRKKKKTLTREQILASRKVL  119
            + +++WN+ + HMRA++N A+ ++L+    NPF+   +R   K+KKTLT+ +I   +K+ 
Sbjct  69   LSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEI---KKIY  125

Query  120  NQFIEREKMQRG-----YRSPLYPAWFWLTVVETFNYTAIRLNQLIHLRVRDIDLVHDTL  174
                 RE+ ++       RS+L PAWFWLTVV+T+ YT++R NQL+H+R+ D++L ++ +
Sbjct  126  LIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWI  185

Query  175  FIQIEGSKSHDEHIVPIASRLRPYLEHLLEEAKTKGIRADDQLFNINRFSRRTLRQGKPM  234
             ++ E+SK+H EH +PIA  LRP LE+L+  A  KG    DQLFNI+R+  R       M
Sbjct  186  NLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENM  245

Query  235  TENQVSYFFAKLSDACHSRFPSHRYRHTVATELMQKPEQNLYVTQKLLGHRDIKVTLSYI  294
                +  FF +LS  C+  +++HR+RHT+ATE+M+ P++NL V Q LLGH  I VTL Y+
Sbjct  246  DSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYV  305

Query  295  EHNVEMLRSCVE  306
            E +++ LR  +E
Sbjct  306  EGDIDSLRLALE  317

53) O3O_03105 in NC_018661


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  207 bits (771),  Expect = 4e-55, Method: Compositional matrix adjust.
 Identities = 126/312 (41%), Positives = 205/312 (66%), Gaps = 10/312 (3%)

Query  2    TFEQLLEEYFFARLLRPDTQSCYCTAVNQYTHW--RNVLPAEVTPHMVLEWRHYLLNVRC  59
             ++++L++YFF++ LRP T+  Y   +N + +    N+LP+EV    VL+WR+ +LN + 
Sbjct  9    NYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQG  68

Query  60   IKPVSWNHYMRHMRALYNFAIEQGLLEQFINPFQKTSLRESRKKKKTLTREQILASRKVL  119
            + +++WN+ + HMRA++N A+ ++L+    NPF+   +R   K+KKTLT+ +I   +K+ 
Sbjct  69   LSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEI---KKIY  125

Query  120  NQFIEREKMQRG-----YRSPLYPAWFWLTVVETFNYTAIRLNQLIHLRVRDIDLVHDTL  174
                 RE+ ++       RS+L PAWFWLTVV+T+ YT++R NQL+H+R+ D++L ++ +
Sbjct  126  LIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWI  185

Query  175  FIQIEGSKSHDEHIVPIASRLRPYLEHLLEEAKTKGIRADDQLFNINRFSRRTLRQGKPM  234
             ++ E+SK+H EH +PIA  LRP LE+L+  A  KG    DQLFNI+R+  R       M
Sbjct  186  NLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENM  245

Query  235  TENQVSYFFAKLSDACHSRFPSHRYRHTVATELMQKPEQNLYVTQKLLGHRDIKVTLSYI  294
                +  FF +LS  C+  +++HR+RHT+ATE+M+ P++NL V Q LLGH  I VTL Y+
Sbjct  246  DSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYV  305

Query  295  EHNVEMLRSCVE  306
            E +++ LR  +E
Sbjct  306  EGDIDSLRLALE  317

54) O3K_22290 in NC_018658


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  207 bits (771),  Expect = 4e-55, Method: Compositional matrix adjust.
 Identities = 126/312 (41%), Positives = 205/312 (66%), Gaps = 10/312 (3%)

Query  2    TFEQLLEEYFFARLLRPDTQSCYCTAVNQYTHW--RNVLPAEVTPHMVLEWRHYLLNVRC  59
             ++++L++YFF++ LRP T+  Y   +N + +    N+LP+EV    VL+WR+ +LN + 
Sbjct  9    NYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQG  68

Query  60   IKPVSWNHYMRHMRALYNFAIEQGLLEQFINPFQKTSLRESRKKKKTLTREQILASRKVL  119
            + +++WN+ + HMRA++N A+ ++L+    NPF+   +R   K+KKTLT+ +I   +K+ 
Sbjct  69   LSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEI---KKIY  125

Query  120  NQFIEREKMQRG-----YRSPLYPAWFWLTVVETFNYTAIRLNQLIHLRVRDIDLVHDTL  174
                 RE+ ++       RS+L PAWFWLTVV+T+ YT++R NQL+H+R+ D++L ++ +
Sbjct  126  LIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWI  185

Query  175  FIQIEGSKSHDEHIVPIASRLRPYLEHLLEEAKTKGIRADDQLFNINRFSRRTLRQGKPM  234
             ++ E+SK+H EH +PIA  LRP LE+L+  A  KG    DQLFNI+R+  R       M
Sbjct  186  NLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENM  245

Query  235  TENQVSYFFAKLSDACHSRFPSHRYRHTVATELMQKPEQNLYVTQKLLGHRDIKVTLSYI  294
                +  FF +LS  C+  +++HR+RHT+ATE+M+ P++NL V Q LLGH  I VTL Y+
Sbjct  246  DSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYV  305

Query  295  EHNVEMLRSCVE  306
            E +++ LR  +E
Sbjct  306  EGDIDSLRLALE  317

55) ECSF_4158 in NC_013654


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  206 bits (766),  Expect = 1e-54, Method: Compositional matrix adjust.
 Identities = 126/312 (41%), Positives = 205/312 (66%), Gaps = 10/312 (3%)

Query  2    TFEQLLEEYFFARLLRPDTQSCYCTAVNQFTHW--RNVLPAEVTPHMVLEWRHYLLNVRC  59
             ++++L++YFF++ LRP T+  Y   +N F +    N+LP+EV    VL+WR+ +LN + 
Sbjct  9    NYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQG  68

Query  60   IKPVSWNHYMRHMRALYNFAIEQGLLEQFINPFQKTSLRESRKKKKTLTREQILASRKVL  119
            + +++WN+ + HMRA++N A+ ++L+    NPF+   +R   K+KKTLT+ +I   +K+ 
Sbjct  69   LSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEI---KKIY  125

Query  120  NQFIEREKMQRG-----YRSPLYPAWFWLTVVETFNYTAIRLNQLIHLRVRDIDLVHDTL  174
                 RE+ ++       RS+L PAWFWLTVV+T+ YT++R NQL+H+R+ D++L ++ +
Sbjct  126  LIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWI  185

Query  175  FIQIEGSKSHDEHIVSIASRLRPYLEHLLEEAKTKGIRADDQLFNINRFSRRTLRQGKPM  234
             ++ E+SK+H EH ++IA  LRP LE+L+  A  KG    DQLFNI+R+  R       M
Sbjct  186  NLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENM  245

Query  235  TENQVSYFFAKLSDACHSRFPSHRYRHTVATELMQKPEQNLYVTQKLLGHRDIKVTLSYI  294
                +  FF +LS  C+  +++HR+RHT+ATE+M+ P++NL V Q LLGH  I VTL Y+
Sbjct  246  DSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYV  305

Query  295  EHNVEMLRSCVE  306
            E +++ LR  +E
Sbjct  306  EGDIDSLRLALE  317

56) ST548_p5001 in NC_020181


> AJ627388|100|G96|49658942|CAF28569.1|Yersinia_pseudotuberculosis_32777|+|98233..99213|api95|-|putative 
phage integrase
Length=326

 Score =  204 bits (759),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 127/307 (42%), Positives = 203/307 (67%), Gaps = 10/307 (3%)

Query  3    LEEYFFARLLRPDTQSCYCTAVNQFTHW--RNVLPAEVTPHMVLEWRHYLLNVRCIKPVS  60
            L++YFF++ LRP T+  Y   +N F +    N+LP+EV    VL+WR+ +LN + + +++
Sbjct  14   LQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLSSIT  73

Query  61   WNHYMRHMRALYNFAIEQGLLEQFINPFQKTSLRESRKKKKTLTREQILASRKVLNQFIE  120
            WN+ + HMRA++N A+ ++L+    NPF+   +R   K+KKTLT+ +I   +K+      
Sbjct  74   WNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEI---KKIYLIMEA  130

Query  121  REKMQRG-----YRSPLYPAWFWLTVVETFNYTAIRLNQLIHLRVRDIDLVHDTLFIQSE  175
            RE+ ++       RS+L PAWFWLTVV+T+ YT++R NQL+H+R+ D++L ++ + +++E
Sbjct  131  REREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGWINLRPE  190

Query  176  GSKSHDEHVVPIASRLRPYLEQMLGEAKTKGMRADDQLFNINRFSRRTLRQGKPMTENQV  235
            +SK+H EH +PIA  LRP LE++++ A  KG    DQLFNI+R+  R       M    +
Sbjct  191  ASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTENMDSPPL  250

Query  236  SYFFAKLSDACHSRFSSHRYRHTVATELMQKPEQNLYVTQKLLGHRDIKVTLSYIEHNVE  295
              FF +LS  C+  +S+HR+RHT+ATE+M+ P++NL V Q LLGH  I VTL Y+E +++
Sbjct  251  RSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDID  310

Query  296  MLRSCVE  302
             LR  +E
Sbjct  311  SLRLALE  317